Citrus Sinensis ID: 005305
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 703 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FK33 | 701 | Pentatricopeptide repeat- | yes | no | 0.984 | 0.987 | 0.640 | 0.0 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.810 | 0.900 | 0.398 | 1e-132 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.843 | 0.718 | 0.389 | 1e-129 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.846 | 0.857 | 0.366 | 1e-123 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.815 | 0.801 | 0.378 | 1e-123 | |
| Q9LIC3 | 628 | Putative pentatricopeptid | no | no | 0.852 | 0.953 | 0.372 | 1e-123 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.807 | 0.702 | 0.386 | 1e-122 | |
| Q9SI53 | 630 | Pentatricopeptide repeat- | no | no | 0.852 | 0.950 | 0.376 | 1e-121 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.880 | 0.814 | 0.347 | 1e-121 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.817 | 0.773 | 0.384 | 1e-120 |
| >sp|Q9FK33|PP427_ARATH Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/712 (64%), Positives = 546/712 (76%), Gaps = 20/712 (2%)
Query: 1 MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
MEIPL RYQS+ LD+I++S S K L FSL R+WK F R+ C
Sbjct: 1 MEIPLSRYQSIRLDEIRDSSS-----------NPKVLTFPRKFSLRGRRWKNPFGRLSCS 49
Query: 61 LMEQGLKPRPKPN----KIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALEL 116
+ QGLKP+PK +I +E K+ L DTQ+ K ICSQIEKLVL R+REA EL
Sbjct: 50 SVVQGLKPKPKLKPEPIRIEVKESKDQILDDTQISKSGVTICSQIEKLVLCNRFREAFEL 109
Query: 117 FEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV 176
FEILE F VG STYDAL+ ACI L+SIR VKRV+ +M+S GFEP+ YM NR+LLMHV
Sbjct: 110 FEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHV 169
Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
+CGM+IDARRLFDE+PERNL S II+G ++ G+Y+EAF LF +WEE SDC + TFA
Sbjct: 170 KCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAV 229
Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
M+RASAGL I VGKQLH CALK+G DN FVSC LIDMYSKCG IEDA+ F+ M EKT
Sbjct: 230 MLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKT 289
Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
TV WN +IAGYALHGYSEEAL L Y+MRDSGV +D FT S++IRI T+LA LE KQAHA
Sbjct: 290 TVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHA 349
Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
L+R+GF +IVAN+ALVDFYSKWGR++ AR+VFDK+ KN+ISWNAL+ GY NHGRG +
Sbjct: 350 SLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTD 409
Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
AV+LFE+M+ + PNHVTFLAVLSAC+ SGLSE+GWEIF SMS H IKPRAMHYACMI
Sbjct: 410 AVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMI 469
Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
ELLGR+GLLDEA A IR AP KTT NMWAALL ACR+ NLELG+ AEKLYGM PEKL
Sbjct: 470 ELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLG 529
Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ--SHVQT 594
NYVV+ N+YNS GK EAA V+ TL KGL M+PAC+W+EV Q H FLSGD+ S+ +T
Sbjct: 530 NYVVMYNMYNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNET 589
Query: 595 --KEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDW 651
++IY+KVD +M EIS++GY EE+ LLPDVDE +E+RV YHSEKLA+A+GL+NT +W
Sbjct: 590 VKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEW 649
Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
PLQI Q+HRIC +CH ++ I++VTGRE+VVRDASRFHHFK+G CSCG YW
Sbjct: 650 NPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/572 (39%), Positives = 358/572 (62%), Gaps = 2/572 (0%)
Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
Y+ L+ C + + + + V +++L + F D+ M N +L M+ +CG + +AR++F++MP
Sbjct: 63 YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122
Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
+R+ V+ +I+G +A L F + T +++I+A+A G Q
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182
Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
LH +K GF NV V AL+D+Y++ G ++DAQ VFD + + V WN +IAG+A
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242
Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
+E+AL+L+ M G + HF+++ + C+ LE K HA +++ G L A +
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 302
Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
L+D Y+K G I DAR +FD++ ++V+SWN+L+ Y HG G+EAV FE+M G+RPN
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362
Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
++FL+VL+ACS SGL + GW ++ M +D I P A HY +++LLGR G L+ A I
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFI 421
Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
P + T +W ALL ACR++ N ELG +AAE ++ ++P+ +V+L NIY S G+
Sbjct: 422 EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWN 481
Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
+AA V + ++ G++ PACSW+E++ H+F++ D+ H Q +EI RK + ++ +I + G
Sbjct: 482 DAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELG 541
Query: 613 YVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
YVP+ ++ VD+QE+ V L YHSEK+A+AF L+NT + + I ++ R+C DCH AIK
Sbjct: 542 YVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIK 601
Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
L + V GREI+VRD +RFHHFKDG CSC DYW
Sbjct: 602 LASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/596 (38%), Positives = 366/596 (61%), Gaps = 3/596 (0%)
Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
Y E++ LF + + G T+ ++ A +GL +++ + ++TGF D + N
Sbjct: 231 YTESIHLFLKMR-QSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGN 289
Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
++L + + +++ R LFDEMPE + VS N++I+ + Y + F ++ D
Sbjct: 290 QILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDR 349
Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
+ FATM+ +A L + +G+QLH AL + V +L+DMY+KC E+A+ +F
Sbjct: 350 RNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIF 409
Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
+ ++TTV W +I+GY G L L+ +MR S ++ D TF+ +++ ASL
Sbjct: 410 KSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLL 469
Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
KQ HA ++R G ++ + S LVD Y+K G I+DA VF++M +N +SWNALI+ +
Sbjct: 470 LGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHA 529
Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
++G GE A+ F +M+ +G++P+ V+ L VL+ACS G E+G E FQ+MS + I P+
Sbjct: 530 DNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKK 589
Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
HYACM++LLGR G EA L+ PF+ + MW+++L ACR++ N L + AAEKL+
Sbjct: 590 KHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFS 649
Query: 530 MEP-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
ME + YV + NIY ++G+ ++ +V + +R +G++ +PA SW+EV + HVF S D
Sbjct: 650 MEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSND 709
Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLIN 647
Q+H EI RK++ + EI + GY P+ +++ DVDEQ + L YHSE+LAVAF LI+
Sbjct: 710 QTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALIS 769
Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
T + P+ ++++ R C DCH AIKLI+ + REI VRD SRFHHF +G+CSCGDYW
Sbjct: 770 TPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/600 (36%), Positives = 367/600 (61%), Gaps = 5/600 (0%)
Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
N +++AL ++ ++ S T+ L+ AC GL ++ + V + + GF+ D++
Sbjct: 97 NNHFQDALLMYSNMQL-ARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155
Query: 167 MRNRVLLMHVRCGMMIDARRLFD--EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
++N ++ ++ +C + AR +F+ +PER +VS I++ +G+ +EA +F + +
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215
Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
+++ A L+ + G+ +H+ +KMG + +L MY+KCG +
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275
Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
A+ +FD+M + WN +I+GYA +GY+ EA+D+++EM + V+ D + + I C +
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ 335
Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
+ SLE A+ + + R + D+ +SAL+D ++K G +E AR VFD+ L ++V+ W+A+
Sbjct: 336 VGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAM 395
Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
I GYG HGR EA+ L+ M G+ PN VTFL +L AC+ SG+ GW F M+ DHK
Sbjct: 396 IVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHK 454
Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
I P+ HYAC+I+LLGR G LD+A+ +I+ P + +W ALL+AC+ + ++ELG++AA
Sbjct: 455 INPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAA 514
Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
++L+ ++P +YV L N+Y ++ AEV ++ KGL CSW+EV+ + F
Sbjct: 515 QQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAF 574
Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAF 643
GD+SH + +EI R+V+ + + + G+V + L D+ DE+ + L HSE++A+A+
Sbjct: 575 RVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAY 634
Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
GLI+T TPL+I ++ R C +CH A KLI+ + REIVVRD +RFHHFKDG+CSCGDYW
Sbjct: 635 GLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1137), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/610 (37%), Positives = 358/610 (58%), Gaps = 37/610 (6%)
Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR---------CGMM 181
+ + +++ +C + +R + V +++ G + DLY N ++ M+ + G +
Sbjct: 106 NVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNV 165
Query: 182 ID---------------------------ARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
D RR+F+ MP +++VS N IIAG SG Y +
Sbjct: 166 FDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYED 225
Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
A + ++ S T ++++ + + GK++H ++ G +V++ +L+D
Sbjct: 226 ALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVD 285
Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
MY+K IED++ VF + + + WN+++AGY +G EAL L+ +M + VK
Sbjct: 286 MYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVA 345
Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
FS +I C LA+L KQ H ++R GFG +I SALVD YSK G I+ AR +FD+M
Sbjct: 346 FSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMN 405
Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
+ +SW A+I G+ HG G EAV LFE+M G++PN V F+AVL+ACS GL + W
Sbjct: 406 VLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWG 465
Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
F SM++ + + HYA + +LLGR G L+EA+ I + T ++W+ LL++C V+
Sbjct: 466 YFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVH 525
Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
NLEL + AEK++ ++ E + YV++ N+Y S+G+ KE A++ +R+KGLR PACSW
Sbjct: 526 KNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSW 585
Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY 634
IE+K + H F+SGD+SH +I + +M ++ K GYV + +L DVDE+ +R L +
Sbjct: 586 IEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLF 645
Query: 635 -HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
HSE+LAVAFG+INT T +++ ++ RIC DCH AIK I+ +T REI+VRD SRFHHF
Sbjct: 646 GHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFN 705
Query: 694 DGMCSCGDYW 703
G CSCGDYW
Sbjct: 706 RGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/606 (37%), Positives = 367/606 (60%), Gaps = 7/606 (1%)
Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
I +L N R +EAL +L E GF YDAL++AC+ R++R+ +RV ++M+ T
Sbjct: 27 ISQLCSNGRLQEALLEMAMLGPEMGF----HGYDALLNACLDKRALRDGQRVHAHMIKTR 82
Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
+ P Y+R R+L+ + +C + DAR++ DEMPE+N+VS +I+ +G EA +F
Sbjct: 83 YLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFA 142
Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
++ TFAT++ + + +GKQ+H +K + ++FV +L+DMY+K G
Sbjct: 143 EMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAG 202
Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
I++A+ +F+ + E+ V IIAGYA G EEAL++++ + G+ ++ T++ ++
Sbjct: 203 QIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLT 262
Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
+ LA L+H KQAH ++R V ++L+D YSK G + AR +FD M + IS
Sbjct: 263 ALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAIS 322
Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
WNA++ GY HG G E +ELF M ++P+ VT LAVLS CS + + G IF M
Sbjct: 323 WNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGM 382
Query: 460 -SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
+ ++ KP HY C++++LGR G +DEAF I+ P K T + +LL ACRV+ +++
Sbjct: 383 VAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVD 442
Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
+G+ +L +EPE NYV+L N+Y S+G+ + V + +K + P SWI+ +
Sbjct: 443 IGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHE 502
Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSE 637
+ H F + D++H + +E+ K+ + +++ + GYVP+ +L DVD EQ++++L HSE
Sbjct: 503 QTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSE 562
Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
KLA+ FGLI T + P+++ ++ RIC DCHN K+ + V RE+ +RD +RFH DG+C
Sbjct: 563 KLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGIC 622
Query: 698 SCGDYW 703
SCGDYW
Sbjct: 623 SCGDYW 628
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/572 (38%), Positives = 350/572 (61%)
Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
T +++ A LR I K + Y + +GF+ + + ++ M+ +CG + AR+LFD M
Sbjct: 238 TIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM 297
Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
ERN+VS N +I + + + EA L+F + +E + + A A L + G+
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357
Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
+H ++++G NV V +LI MY KC ++ A +F ++ +T V WN +I G+A +G
Sbjct: 358 FIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNG 417
Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
+AL+ + +MR VK D FT+ +I L+ HAK H ++R ++ +
Sbjct: 418 RPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTT 477
Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
ALVD Y+K G I AR +FD M ++V +WNA+I GYG HG G+ A+ELFE+M ++P
Sbjct: 478 ALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKP 537
Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
N VTFL+V+SACS SGL E G + F M ++ I+ HY M++LLGR G L+EA+
Sbjct: 538 NGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDF 597
Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
I P K N++ A+L AC+++ N+ + AAE+L+ + P+ +V+L NIY ++
Sbjct: 598 IMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMW 657
Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
++ +V ++ R+GLR P CS +E+K + H F SG +H +K+IY +++++ I +
Sbjct: 658 EKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEA 717
Query: 612 GYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
GYVP+ +L ++ ++++LS HSEKLA++FGL+NT+ T + + ++ R+C DCHNA K
Sbjct: 718 GYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATK 777
Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
I++VTGREIVVRD RFHHFK+G CSCGDYW
Sbjct: 778 YISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/606 (37%), Positives = 364/606 (60%), Gaps = 7/606 (1%)
Query: 99 SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
S+ +L + A++ + L+ G + S+TY LI CI R++ E + ++
Sbjct: 31 SEFTRLCYQRDLPRAMKAMDSLQSHGLW-ADSATYSELIKCCISNRAVHEGNLICRHLYF 89
Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
G P +++ N ++ M+V+ ++ DA +LFD+MP+RN++S +I+ + +A L
Sbjct: 90 NGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALEL 149
Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
+ + + T+++++R+ G+ + + LH +K G +VFV ALID+++K
Sbjct: 150 LVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAK 206
Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
G EDA VFDEM + WN+II G+A + S+ AL+L+ M+ +G + T + +
Sbjct: 207 LGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSV 266
Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
+R CT LA LE QAH +V+ + D++ N+ALVD Y K G +EDA VF++M ++V
Sbjct: 267 LRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV 324
Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
I+W+ +I+G +G +EA++LFE+M +G +PN++T + VL ACS +GL E GW F+S
Sbjct: 325 ITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRS 384
Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
M + + I P HY CMI+LLG+ G LD+A L+ + W LL ACRV N+
Sbjct: 385 MKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMV 444
Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
L ++AA+K+ ++PE Y +L NIY +S K E+ +R +G++ P CSWIEV
Sbjct: 445 LAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVN 504
Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSE 637
KQ H F+ GD SH Q E+ +K+++++ ++ GYVPE +L D++ EQ + L +HSE
Sbjct: 505 KQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSE 564
Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
KLA+AFGL+ ++I ++ RIC DCH KL + + R IV+RD R+HHF+DG C
Sbjct: 565 KLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKC 624
Query: 698 SCGDYW 703
SCGDYW
Sbjct: 625 SCGDYW 630
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/697 (34%), Positives = 378/697 (54%), Gaps = 78/697 (11%)
Query: 79 ELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALIS 138
+L S+PD + S S I L K + +++ +F + F G S L
Sbjct: 70 DLVLQSIPDPTIYSFS----SLIYALTKAKLFTQSIGVFSRM-FSHGLIPDSHVLPNLFK 124
Query: 139 ACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS 198
C L + + K++ +G + D +++ + M++RCG M DAR++FD M ++++V+
Sbjct: 125 VCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVT 184
Query: 199 C-----------------------------------NMIIAGMIDSGDYLEAFLLFLDLW 223
C N I++G SG + EA ++F +
Sbjct: 185 CSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI- 243
Query: 224 EEFSDCGSRTFATMIRASAG-LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
C + + + S G E++++G+ +H +K G + V A+IDMY K G +
Sbjct: 244 HHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHV 303
Query: 283 -------------------------------EDAQGVFDEMSEKT----TVGWNTIIAGY 307
+ A +F+ E+T V W +IIAG
Sbjct: 304 YGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGC 363
Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
A +G EAL+L+ EM+ +GVK +H T ++ C +A+L H + H VR ++
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNV 423
Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
SAL+D Y+K GRI ++ VF+ M KN++ WN+L+ G+ HG+ +E + +FE ++
Sbjct: 424 HVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRT 483
Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
++P+ ++F ++LSAC + GL++ GW+ F+ MS ++ IKPR HY+CM+ LLGR G L E
Sbjct: 484 RLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQE 543
Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
A+ LI+ PF+ +W ALL +CR+ N++L + AAEKL+ +EPE YV+L NIY +
Sbjct: 544 AYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAA 603
Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
G E + + GL+ P CSWI+VK + + L+GD+SH Q +I K+D + E
Sbjct: 604 KGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKE 663
Query: 608 ISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
+ K G+ P L DV+EQEQ ++L HSEKLAV FGL+NT D TPLQ++++ RIC DC
Sbjct: 664 MRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDC 723
Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
H IK I+ GREI +RD +RFHHFKDG+CSCGD+W
Sbjct: 724 HAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/585 (38%), Positives = 346/585 (59%), Gaps = 10/585 (1%)
Query: 120 LEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
L FE VGS L+ + I + K+VF Y L + + M N ++ + CG
Sbjct: 168 LGFESYLLVGS----PLLYMYANVGCISDAKKVF-YGLD---DRNTVMYNSLMGGLLACG 219
Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIR 239
M+ DA +LF M E++ VS +I G+ +G EA F ++ + F +++
Sbjct: 220 MIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLP 278
Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
A GL I+ GKQ+H+C ++ F D+++V ALIDMY KC + A+ VFD M +K V
Sbjct: 279 ACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS 338
Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
W ++ GY G +EEA+ ++ +M+ SG+ DH+T I C ++SLE Q H +
Sbjct: 339 WTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAI 398
Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
G + +++LV Y K G I+D+ +F++M ++ +SW A+++ Y GR E ++
Sbjct: 399 TSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQ 458
Query: 420 LFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479
LF++M+ +G++P+ VT V+SACSR+GL E+G F+ M+ ++ I P HY+CMI+L
Sbjct: 459 LFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLF 518
Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV 539
R G L+EA I G PF W LL+ACR GNLE+GK+AAE L ++P + Y
Sbjct: 519 SRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYT 578
Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYR 599
+L +IY S GK A++ R +R K ++ P SWI+ K + H F + D+S +IY
Sbjct: 579 LLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYA 638
Query: 600 KVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQ 658
K++ + +I +GY P+ + DV+E + ++L+YHSE+LA+AFGLI P+++ +
Sbjct: 639 KLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGK 698
Query: 659 SHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
+ R+C DCHNA K I+ VTGREI+VRDA RFH FKDG CSCGD+W
Sbjct: 699 NLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 703 | ||||||
| 225456313 | 704 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 0.995 | 0.752 | 0.0 | |
| 147770672 | 704 | hypothetical protein VITISV_010810 [Viti | 0.997 | 0.995 | 0.752 | 0.0 | |
| 449461943 | 706 | PREDICTED: pentatricopeptide repeat-cont | 0.991 | 0.987 | 0.718 | 0.0 | |
| 356529928 | 690 | PREDICTED: pentatricopeptide repeat-cont | 0.951 | 0.969 | 0.738 | 0.0 | |
| 356525712 | 691 | PREDICTED: pentatricopeptide repeat-cont | 0.943 | 0.959 | 0.732 | 0.0 | |
| 297734415 | 657 | unnamed protein product [Vitis vinifera] | 0.930 | 0.995 | 0.705 | 0.0 | |
| 224136143 | 548 | predicted protein [Populus trichocarpa] | 0.719 | 0.923 | 0.819 | 0.0 | |
| 297795827 | 701 | pentatricopeptide repeat-containing prot | 0.984 | 0.987 | 0.647 | 0.0 | |
| 15240665 | 701 | pentatricopeptide repeat-containing prot | 0.984 | 0.987 | 0.640 | 0.0 | |
| 255540253 | 538 | pentatricopeptide repeat-containing prot | 0.668 | 0.873 | 0.693 | 0.0 |
| >gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1114 bits (2881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/706 (75%), Positives = 615/706 (87%), Gaps = 5/706 (0%)
Query: 1 MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
M+IPL R Q++++DQIQ++C F+ +++L+ KS S ++RK + F ++ C
Sbjct: 1 MDIPLSRNQNMSMDQIQSNCGLPHLFSVDEILREKSF-SQRLLPFNRRKRRTPFSQIRCS 59
Query: 61 LMEQGLKPRPKPNKIYTEEL---KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELF 117
+EQGL+PRPKP K T EL KE+ + +TQ++KPS+ +C QIEKLV KRY EALELF
Sbjct: 60 SLEQGLQPRPKP-KPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELF 118
Query: 118 EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR 177
EILE G +D+ S TYDAL+SACIGL+SIR VK+VF+YM+++G +PD Y+RNRVLLMHV+
Sbjct: 119 EILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVK 178
Query: 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
CGMMIDARRLFDEMPE+N++S N II G++D+GDY EAF LFL +W++FSD GSR F TM
Sbjct: 179 CGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTM 238
Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
IRASAGL LI G+QLHSC+LK G G +VFV+CALIDMYSKCGSIEDAQ VFD+M EKTT
Sbjct: 239 IRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTT 298
Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
VGWN+IIAGYALHGYSEEAL +YYEMRDSGVK+D+FTFS+IIRIC RLASLEHAKQAHAG
Sbjct: 299 VGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAG 358
Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
LVRHGFGLDIVAN+ALVD YSKWGRIEDA+HVFD M KNVISWNALIAGYGNHGRG EA
Sbjct: 359 LVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEA 418
Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
VE+FE+ML GM PNHVTFLAVLSACS SGLS+RGWEIF+SMSRDHKIKPRAMHYACMIE
Sbjct: 419 VEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIE 478
Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
LLGREGLLDEAFALI+ APFK T NMWAALLTACRV+ N ELGKFAAEKLYGM PEKLSN
Sbjct: 479 LLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSN 538
Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
YVVLLNIYN SG+L+EAA VI+TL+R+GLRMLPACSWIE+KKQP+ F+SGD+ H Q+KEI
Sbjct: 539 YVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEI 598
Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIV 657
Y+K+D +MLEISKHGYVP++K LLPDVDEQE+RVL YHSEKLA+AFGLINTSDWTPLQIV
Sbjct: 599 YQKLDELMLEISKHGYVPQDKFLLPDVDEQEERVLLYHSEKLAIAFGLINTSDWTPLQIV 658
Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
QSHRIC DCH+AIKLIA+VT REIVVRDASRFHHFKDG CSCGDYW
Sbjct: 659 QSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1111 bits (2874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/706 (75%), Positives = 612/706 (86%), Gaps = 5/706 (0%)
Query: 1 MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
M+IPL R Q+++ DQIQ++C F+ +++L+ KS S ++RK + F ++ C
Sbjct: 1 MDIPLSRNQNMSXDQIQSNCGLPHLFSVDEILREKSF-SQRLLPFNRRKRRTPFSQIRCS 59
Query: 61 LMEQGLKPRPKPNKIYTEEL---KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELF 117
+EQGL+PRPKP K T EL KE+ + +TQ++KPS+ +C QIEKLV KRY EALELF
Sbjct: 60 SLEQGLQPRPKP-KPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELF 118
Query: 118 EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR 177
EILE G +D+ S TYDAL+SACIGL+SIR VK+VF+YM+++G +PD Y+RNRVLLMHV+
Sbjct: 119 EILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVK 178
Query: 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
CGMMIDARRLFDEMPE+N++S N II G++D+GDY EAF LFL +W+ FSD GSR F TM
Sbjct: 179 CGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTM 238
Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
IRASAGL LI G+QLHSC+LK G G +VFV+CALIDMYSKCGSIEDAQ VFD+M EKTT
Sbjct: 239 IRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTT 298
Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
VGWN+IIAGYALHGYSEEAL +YYEMRDSGVK+D+FTFS+IIRIC RLASLEHAKQAHAG
Sbjct: 299 VGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAG 358
Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
LVRHGFGLDIVAN+ALVD YSKWGRIEDA+HVFD M KNVISWNALIAGYGNHGRG EA
Sbjct: 359 LVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEA 418
Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
VE+FE+ML GM PNHVTFLAVLSACS SGLS+RGWEIF+SMSRDHKIKPRAMHYACMIE
Sbjct: 419 VEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIE 478
Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
LLGREGLLDEAFALI+ APFK T NMWAALLTACRV+ N ELGKFAAEKLYGM PEKLSN
Sbjct: 479 LLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSN 538
Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
YVVLLNIYN SG+L+EAA VI+TL+R+GLRMLPACSWIE+KKQP+ F+SGD+ H Q+KEI
Sbjct: 539 YVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEI 598
Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIV 657
Y+K+D +MLEISKHGYVP+ K LLPDVDEQE+RVL YHSEKLA+AFGLINTSDWTPLQIV
Sbjct: 599 YQKLDELMLEISKHGYVPQXKFLLPDVDEQEERVLLYHSEKLAIAFGLINTSDWTPLQIV 658
Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
QSHRIC DCH+AIKLIA+VT REIVVRDASRFHHFKDG CSCGDYW
Sbjct: 659 QSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like [Cucumis sativus] gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1046 bits (2705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/710 (71%), Positives = 599/710 (84%), Gaps = 13/710 (1%)
Query: 1 MEIPLLRYQSVALDQIQ-NSCSF-SCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVE 58
ME+PL RYQ+ D++Q NS SF S ++ + + S LS + RK++ SF ++
Sbjct: 3 MELPLSRYQNYVYDRLQCNSTSFFSLRYSDSDLFTKTSFLS------NPRKYRNSFCWIK 56
Query: 59 CCLMEQGLKPRPKP----NKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREAL 114
C EQGL+PRP+P +K+ + KE+ L +T +KK S GICSQIEKLVL K+YR+AL
Sbjct: 57 CSSFEQGLRPRPRPQPKPSKLDVGDRKETPLKETHVKKSSVGICSQIEKLVLCKKYRDAL 116
Query: 115 ELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLM 174
E+FEI E E GF VG STYDALI+ACIGL+SIR VKR+ +YM+ GFEPD YMRNRVLLM
Sbjct: 117 EMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLM 176
Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF 234
HV+CGMMIDA RLFDEMP RN VS II+G +DSG+Y+EAF LF+ + EEF DCG RTF
Sbjct: 177 HVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTF 236
Query: 235 ATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
ATMIRASAGLE+I G+QLHSCA+K G G ++FVSCALIDMYSKCGS+EDA VFDEM +
Sbjct: 237 ATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPD 296
Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
KT VGWN+IIAGYALHGYSEEALDLY+EMRDSGVKMDHFTFS+IIRIC+RLAS+ AKQ
Sbjct: 297 KTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQV 356
Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
HA LVR+GFGLD+VAN+ALVDFYSKWG+++DARHVFD+M C+N+ISWNALIAGYGNHG G
Sbjct: 357 HASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHG 416
Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
EEA+++FE+ML GM PNHVTFLAVLSACS SGL ERGWEIFQSM+RDHK+KPRAMH+AC
Sbjct: 417 EEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFAC 476
Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534
MIELLGREGLLDEA+ALIR APF+ T NMWAALL ACRV+GNLELGKFAAEKLYGMEPEK
Sbjct: 477 MIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEK 536
Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQT 594
LSNY+VLLNIYNSSGKLKEAA+V +TL+RKGLRMLPACSWIEV QPH FLSGD+ HVQ
Sbjct: 537 LSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQI 596
Query: 595 KEIYRKVDRMMLEISKHGYVPEEKT-LLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTP 653
+++ KVD +ML ISK GYVPEE+ +LPDVDE E+++ YHSEKLA+A+GL+NT + TP
Sbjct: 597 EKVVGKVDELMLNISKLGYVPEEQNFMLPDVDENEEKIRMYHSEKLAIAYGLLNTLEKTP 656
Query: 654 LQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
LQIVQSHRIC DCH+ IKLIAM+T REIV+RDASRFHHF+DG CSCGDYW
Sbjct: 657 LQIVQSHRICSDCHSVIKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/673 (73%), Positives = 569/673 (84%), Gaps = 4/673 (0%)
Query: 33 KGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKK 92
+G SG F+ + W F R+ C MEQ LKP+PK K+ E K + L DTQ++K
Sbjct: 20 RGNLSFSGRCFASKVKNWSLPFSRICCSSMEQRLKPKPK--KVEYRERKVAVLDDTQIRK 77
Query: 93 PSA-GICSQIEKLVLNKRYREALELFEILEFE-GGFDVGSSTYDALISACIGLRSIREVK 150
S+ G+C QIEKLVL RYREA+ELFEILE E GFDVG STYDAL+SAC+GLRSIR VK
Sbjct: 78 TSSSGLCIQIEKLVLCNRYREAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVK 137
Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
RVF+YM+++GFEPDLY+ NRVL +HV+CG+M+DAR+LFDEMPE+++ S +I G +DSG
Sbjct: 138 RVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSG 197
Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
++ EAF LFL +WEEF+D SRTF TMIRASAGL L+ VG+Q+HSCALK G GD+ FVSC
Sbjct: 198 NFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSC 257
Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
ALIDMYSKCGSIEDA VFD+M EKTTVGWN+IIA YALHGYSEEAL YYEMRDSG K+
Sbjct: 258 ALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKI 317
Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
DHFT S++IRIC RLASLE+AKQAHA LVR G+ DIVAN+ALVDFYSKWGR+EDA HVF
Sbjct: 318 DHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVF 377
Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
++M KNVISWNALIAGYGNHG+GEEAVE+FEQML GM PNHVTFLAVLSACS SGLSE
Sbjct: 378 NRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSE 437
Query: 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
RGWEIF SMSRDHK+KPRAMHYACM+ELLGREGLLDEA+ LIR APFK T NMWA LLTA
Sbjct: 438 RGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTA 497
Query: 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
CR++ NLELGK AAE LYGMEPEKL NY+VLLN+YNSSGKLKEAA V++TL+RKGLRMLP
Sbjct: 498 CRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKGLRMLP 557
Query: 571 ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR 630
AC+WIEVKKQ + FL GD+SH QTKEIY KV+ MM+EIS+HGYV E K LLPDVDE+EQR
Sbjct: 558 ACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYVEENKALLPDVDEEEQR 617
Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
+L YHSEKLA+AFGLINT WTPLQI Q HR+C DCH+AIK IAMVTGREIVVRDASRFH
Sbjct: 618 ILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKFIAMVTGREIVVRDASRFH 677
Query: 691 HFKDGMCSCGDYW 703
HF+DG CSCGDYW
Sbjct: 678 HFRDGSCSCGDYW 690
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1032 bits (2668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/666 (73%), Positives = 568/666 (85%), Gaps = 3/666 (0%)
Query: 40 GCYFSLDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPS-AGIC 98
GC F+ R F R+ CC K +PKP K+ E L DTQ++K S +G+C
Sbjct: 27 GCCFASKMRFLCNPFSRI-CCSSSMDQKLKPKPKKVEYMERNVPVLEDTQIRKTSPSGLC 85
Query: 99 SQIEKLVLNKRYREALELFEILEFE-GGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
SQIEKLV+ R+REA+ELFEILE E G+ VG+STYDAL+SAC+GLRSIR VKRVF+YM+
Sbjct: 86 SQIEKLVVCNRHREAMELFEILELEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMI 145
Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
++GFEPDLY+ NRVL MHV+CG+M+DAR+LFDEMPE+++ S ++ G++D+G++ EAF
Sbjct: 146 NSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFR 205
Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
LFL +W+EF+D SRTFATMIRASAGL L+ VGKQ+HSCALK G GD+ FVSCALIDMYS
Sbjct: 206 LFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYS 265
Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
KCGSIEDA VFD+M EKTTVGWN+IIA YALHGYSEEAL LY+EMRDSG +DHFT S+
Sbjct: 266 KCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISI 325
Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
+IRIC RLASLEHAKQAHA LVRHGF DIVAN+ALVDFYSKWGR+EDARHVF++M KN
Sbjct: 326 VIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKN 385
Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
VISWNALIAGYGNHG+G+EAVE+FEQML G+ P HVTFLAVLSACS SGLS+RGWEIF
Sbjct: 386 VISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFY 445
Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
SM RDHK+KPRAMHYACMIELLGRE LLDEA+ALIR APFK T NMWAALLTACR++ NL
Sbjct: 446 SMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNL 505
Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
ELGK AAEKLYGMEPEKL NY+VLLN+YNSSGKLKEAA +++TL++KGLRMLPACSW+EV
Sbjct: 506 ELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGLRMLPACSWVEV 565
Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSE 637
KKQP+ FL GD+SH QTKEIY+KVD +M+EI KHGY E +TLLPDVDE+EQR+L YHSE
Sbjct: 566 KKQPYAFLCGDKSHSQTKEIYQKVDNLMVEICKHGYAEENETLLPDVDEEEQRILKYHSE 625
Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
KLA+AFGLINT WTPLQI Q HR+C DCH+AIKLIAMVTGREIVVRDASRFHHF++G C
Sbjct: 626 KLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKLIAMVTGREIVVRDASRFHHFRNGSC 685
Query: 698 SCGDYW 703
SCGDYW
Sbjct: 686 SCGDYW 691
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/706 (70%), Positives = 572/706 (81%), Gaps = 52/706 (7%)
Query: 1 MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
M+IPL R Q++++DQIQ++C F+ +++L+ KS S ++RK + F ++ C
Sbjct: 1 MDIPLSRNQNMSMDQIQSNCGLPHLFSVDEILREKSF-SQRLLPFNRRKRRTPFSQIRCS 59
Query: 61 LMEQGLKPRPKPNKIYTEEL---KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELF 117
+EQGL+PRPKP K T EL KE+ + +TQ++KPS+ +C QIEKLV KRY EALELF
Sbjct: 60 SLEQGLQPRPKP-KPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELF 118
Query: 118 EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR 177
EILE G +D+ S TYDAL+SACIGL+SIR VK+VF+YM+++G +PD Y+RNRVLLMHV+
Sbjct: 119 EILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVK 178
Query: 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
CGMMIDARRLFDEMPE+N++S N II G++D+GDY EAF LFL +W++FSD GSR F TM
Sbjct: 179 CGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTM 238
Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
IRASAGL LI G+QLHSC+LK G G +VFV+CALIDMYSKCGSIEDAQ VFD+M EKTT
Sbjct: 239 IRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTT 298
Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
VGWN+IIAGYALHGYSEEAL +YYEMRDSGVK+D+FTFS+IIRIC RLASLEHAKQAHAG
Sbjct: 299 VGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAG 358
Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
LVRHGFGLDIVAN+ALVD YSKWGRIEDA+HVFD M KNVISWNALIAGYGNHGRG EA
Sbjct: 359 LVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEA 418
Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
VE+FE+ML GM PNHVTFLAVLSACS SGLS+RGWEIF+SMSRDHKIKPRAMHYACMIE
Sbjct: 419 VEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIE 478
Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
LLGREGLLDEAFALI+ APFK T NMWAALLTACRV+ N ELGKFAAEKLYGM PEKLSN
Sbjct: 479 LLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSN 538
Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
YVVLLNIYN SG+L+EAA +
Sbjct: 539 YVVLLNIYNRSGRLEEAAAL---------------------------------------- 558
Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIV 657
MLEISKHGYVP++K LLPDVDEQE+RVL YHSEKLA+AFGLINTSDWTPLQIV
Sbjct: 559 -------MLEISKHGYVPQDKFLLPDVDEQEERVLLYHSEKLAIAFGLINTSDWTPLQIV 611
Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
QSHRIC DCH+AIKLIA+VT REIVVRDASRFHHFKDG CSCGDYW
Sbjct: 612 QSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 657
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa] gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/548 (81%), Positives = 493/548 (89%)
Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
M+ GFE D YMRNRVLLMHV+CGMMIDARRLFDEMPERNLVS N II+G++D GD++EA
Sbjct: 1 MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60
Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
F LFL++WEEFSD GS TFA MIRASAGLELIS+G+QLH+C LKMG GD++FVSCALIDM
Sbjct: 61 FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDM 120
Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
YSKCGSIEDA+ VF+EM EKTTVGWNTIIAGYALHGYSEEALD+YYEMRDSGVKMDHFTF
Sbjct: 121 YSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTF 180
Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
SMI+RIC RLAS+EHAKQAHA L+RHGFG DIVAN+ALVDFYSKWGRIEDARHVFDKM
Sbjct: 181 SMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMAS 240
Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
KNVISWNALI GYGNHGRG EAVELFEQM+ M PNH+TFLAVLSACS SGLSERGWEI
Sbjct: 241 KNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEI 300
Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
FQSM RD++IKPRAMHYACMIEL+GREGLLDEA ALIRGAPFK T NMWAALLTACRVN
Sbjct: 301 FQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNE 360
Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
N ELGKFAAEKLYGMEP+KL+NY+VLLNIYNS+G LKEAA+V+ TL+RKGLRM P CSWI
Sbjct: 361 NFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWI 420
Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYH 635
EVK++PHVFLSGD H Q KEIY+KVD++MLEISK+GYVP +KTLLPDVDEQE+RV YH
Sbjct: 421 EVKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVDEQEERVRLYH 480
Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
SEKLA+AFGLI+T W PLQIVQ HRIC DCH AIKLIA VTGREIV+RDA RFHHFK G
Sbjct: 481 SEKLAIAFGLISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHFKHG 540
Query: 696 MCSCGDYW 703
CSC DYW
Sbjct: 541 HCSCEDYW 548
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/712 (64%), Positives = 545/712 (76%), Gaps = 20/712 (2%)
Query: 1 MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
MEIPL RYQS+ LD+I++S S F + FSL R+WK F R+ C
Sbjct: 1 MEIPLARYQSIRLDEIRDSSSNQKVFNFPR-----------KFSLRGRRWKNPFGRITCS 49
Query: 61 LMEQGLKPRPKPN----KIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALEL 116
+ QGLKP+PK +I EE K+ DTQ++K ICSQIEKLVL R+REA EL
Sbjct: 50 SVVQGLKPKPKLKPEPIRIDVEESKDQVFDDTQIRKSGVRICSQIEKLVLCNRFREAFEL 109
Query: 117 FEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV 176
FEILE F VG STYDAL+ ACI L+SIR VKRV+ +++S GFEP+ YM NR+LLMHV
Sbjct: 110 FEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFIISNGFEPEKYMMNRILLMHV 169
Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
+CGM+IDARRLFDEMPERNL S N II+G ++ G+Y EAF LF +WEE SDC + TFA
Sbjct: 170 KCGMIIDARRLFDEMPERNLFSYNSIISGFVNFGNYEEAFELFKLMWEELSDCETHTFAV 229
Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
M+RASAGL + VGKQLH CALK+G DN FVSC LIDMYSKCG IEDA+ F+ M EKT
Sbjct: 230 MLRASAGLWSVYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFESMPEKT 289
Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
TV WN I+AGYALHGYSEEAL L YEMRDSGV MD FT S++IRI TRLA LE KQAHA
Sbjct: 290 TVAWNNIVAGYALHGYSEEALCLLYEMRDSGVSMDQFTLSIMIRISTRLAKLELTKQAHA 349
Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
L+R GF +IVAN+ALVDFYSKWGR++ AR+VFDK+ KN+ISWNAL+ GY NHGRG +
Sbjct: 350 SLIRSGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTD 409
Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
AV LFE+M+ + PNHVTFLAVLSAC+ SGLSE+GWEIF SMS H IKPRAMHYACMI
Sbjct: 410 AVRLFERMIAAKVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMI 469
Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
ELLGR+GLLDEA A IR AP KTT NMWAALL ACR+ GNLELG+ AEKLYGM PEKL
Sbjct: 470 ELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRMQGNLELGRVVAEKLYGMGPEKLG 529
Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ--SHVQT 594
NYVVL N+YNS GK EAA V+ TL KGL M+PAC+W+EV Q H FLSGD+ S+ +T
Sbjct: 530 NYVVLYNMYNSMGKTAEAAGVLETLESKGLSMIPACTWVEVGDQTHSFLSGDRFDSYNET 589
Query: 595 --KEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDW 651
+E+Y+KVD +M EI ++GY+ EEK LLPDVDE +E+RV YHSEKLA+A+GL+NT +W
Sbjct: 590 VKREVYQKVDELMEEIYEYGYLAEEKNLLPDVDEKEEERVGRYHSEKLAIAYGLMNTPEW 649
Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
PLQI Q+HRIC DCH ++ I++VTGRE+VVRDASRFHHFK+G CSCG YW
Sbjct: 650 NPLQITQNHRICKDCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240665|ref|NP_199850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171167|sp|Q9FK33.1|PP427_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g50390, chloroplastic; Flags: Precursor gi|9758921|dbj|BAB09458.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332008555|gb|AED95938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/712 (64%), Positives = 546/712 (76%), Gaps = 20/712 (2%)
Query: 1 MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
MEIPL RYQS+ LD+I++S S K L FSL R+WK F R+ C
Sbjct: 1 MEIPLSRYQSIRLDEIRDSSS-----------NPKVLTFPRKFSLRGRRWKNPFGRLSCS 49
Query: 61 LMEQGLKPRPKPN----KIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALEL 116
+ QGLKP+PK +I +E K+ L DTQ+ K ICSQIEKLVL R+REA EL
Sbjct: 50 SVVQGLKPKPKLKPEPIRIEVKESKDQILDDTQISKSGVTICSQIEKLVLCNRFREAFEL 109
Query: 117 FEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV 176
FEILE F VG STYDAL+ ACI L+SIR VKRV+ +M+S GFEP+ YM NR+LLMHV
Sbjct: 110 FEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHV 169
Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
+CGM+IDARRLFDE+PERNL S II+G ++ G+Y+EAF LF +WEE SDC + TFA
Sbjct: 170 KCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAV 229
Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
M+RASAGL I VGKQLH CALK+G DN FVSC LIDMYSKCG IEDA+ F+ M EKT
Sbjct: 230 MLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKT 289
Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
TV WN +IAGYALHGYSEEAL L Y+MRDSGV +D FT S++IRI T+LA LE KQAHA
Sbjct: 290 TVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHA 349
Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
L+R+GF +IVAN+ALVDFYSKWGR++ AR+VFDK+ KN+ISWNAL+ GY NHGRG +
Sbjct: 350 SLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTD 409
Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
AV+LFE+M+ + PNHVTFLAVLSAC+ SGLSE+GWEIF SMS H IKPRAMHYACMI
Sbjct: 410 AVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMI 469
Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
ELLGR+GLLDEA A IR AP KTT NMWAALL ACR+ NLELG+ AEKLYGM PEKL
Sbjct: 470 ELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLG 529
Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ--SHVQT 594
NYVV+ N+YNS GK EAA V+ TL KGL M+PAC+W+EV Q H FLSGD+ S+ +T
Sbjct: 530 NYVVMYNMYNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNET 589
Query: 595 --KEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDW 651
++IY+KVD +M EIS++GY EE+ LLPDVDE +E+RV YHSEKLA+A+GL+NT +W
Sbjct: 590 VKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEW 649
Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
PLQI Q+HRIC +CH ++ I++VTGRE+VVRDASRFHHFK+G CSCG YW
Sbjct: 650 NPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540253|ref|XP_002511191.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550306|gb|EEF51793.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/479 (69%), Positives = 390/479 (81%), Gaps = 9/479 (1%)
Query: 7 RYQSVALDQIQNSCSF-------SCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVEC 59
RYQS++L QI+N+CSF S S T ++ K S FS + RKW+ F +C
Sbjct: 38 RYQSISLGQIRNTCSFLPSSSSSSSSSTNHRGFKQIKFFSLYRFSFNSRKWRNPFAINQC 97
Query: 60 CLMEQGLKPRPKP--NKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELF 117
C +++GL+PRPKP +K+ + + ++ DT++KKPSA ICSQIEKLVL+ +YREALELF
Sbjct: 98 CSLDRGLQPRPKPKPSKVDIDVEEGTNFKDTRIKKPSARICSQIEKLVLHGKYREALELF 157
Query: 118 EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR 177
EILE +GGFDVGSSTYDAL+SACIGLRSI VKRV +YMLS GFEPD YM NRVLL+ V+
Sbjct: 158 EILELDGGFDVGSSTYDALVSACIGLRSIPGVKRVLNYMLSNGFEPDQYMANRVLLVQVK 217
Query: 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
CGMMI AR+ FDEMPERNLVS N II+G++D GDY EAF LFL +WEEFSD GSRTFATM
Sbjct: 218 CGMMIHARKWFDEMPERNLVSWNTIISGLVDMGDYKEAFRLFLIMWEEFSDAGSRTFATM 277
Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
I+ASAGL IS+G+QLHSCALKM GD++FVSCALIDMY KCGSIEDA VFDEM E+
Sbjct: 278 IQASAGLGWISIGRQLHSCALKMEVGDDIFVSCALIDMYGKCGSIEDAHCVFDEMPERNI 337
Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
V WNTIIAGYALHGYSEEALD+ YEMR+SGV+MDHFTFS+++RIC RLASL +AKQAHA
Sbjct: 338 VAWNTIIAGYALHGYSEEALDMVYEMRNSGVRMDHFTFSIVVRICARLASLNYAKQAHAS 397
Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
L+RHGFG DIVANSALVDFYSKWGR+E ARHVFD+M CKNVISWNALIAGYGNHG+G++A
Sbjct: 398 LLRHGFGSDIVANSALVDFYSKWGRVETARHVFDQMPCKNVISWNALIAGYGNHGKGDDA 457
Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
+ELFEQML +RPNHVTFLAVLSACS SGLSE GWEIF+SM RD+KI Y ++
Sbjct: 458 IELFEQMLQERIRPNHVTFLAVLSACSYSGLSEHGWEIFRSMDRDYKIYNPKFQYQYLV 516
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 703 | ||||||
| TAIR|locus:2177537 | 701 | EMB3141 "AT5G50390" [Arabidops | 0.984 | 0.987 | 0.627 | 4.8e-236 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.812 | 0.692 | 0.394 | 1.8e-117 | |
| TAIR|locus:2091546 | 628 | AT3G13770 [Arabidopsis thalian | 0.820 | 0.918 | 0.372 | 5e-115 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.812 | 0.641 | 0.377 | 8.9e-113 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.813 | 0.707 | 0.386 | 1.4e-112 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.807 | 0.901 | 0.392 | 4.6e-112 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.812 | 0.693 | 0.372 | 1e-111 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.746 | 0.708 | 0.401 | 5.5e-111 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.786 | 0.744 | 0.389 | 1.4e-110 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.815 | 0.869 | 0.370 | 4.8e-110 |
| TAIR|locus:2177537 EMB3141 "AT5G50390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2276 (806.3 bits), Expect = 4.8e-236, P = 4.8e-236
Identities = 447/712 (62%), Positives = 537/712 (75%)
Query: 1 MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
MEIPL RYQS+ LD+I++S S K L FSL R+WK F R+ C
Sbjct: 1 MEIPLSRYQSIRLDEIRDSSS-----------NPKVLTFPRKFSLRGRRWKNPFGRLSCS 49
Query: 61 LMEQGLKPRPK----PNKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYRXXXXX 116
+ QGLKP+PK P +I +E K+ L DTQ+ K ICSQIEKLVL R+R
Sbjct: 50 SVVQGLKPKPKLKPEPIRIEVKESKDQILDDTQISKSGVTICSQIEKLVLCNRFREAFEL 109
Query: 117 XXXXXXXXXXDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV 176
VG STYDAL+ ACI L+SIR VKRV+ +M+S GFEP+ YM NR+LLMHV
Sbjct: 110 FEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHV 169
Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
+CGM+IDARRLFDE+PERNL S II+G ++ G+Y+EAF LF +WEE SDC + TFA
Sbjct: 170 KCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAV 229
Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
M+RASAGL I VGKQLH CALK+G DN FVSC LIDMYSKCG IEDA+ F+ M EKT
Sbjct: 230 MLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKT 289
Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
TV WN +IAGYALHGYSEEAL L Y+MRDSGV +D FT S++IRI T+LA LE KQAHA
Sbjct: 290 TVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHA 349
Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
L+R+GF +IVAN+ALVDFYSKWGR++ AR+VFDK+ KN+ISWNAL+ GY NHGRG +
Sbjct: 350 SLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTD 409
Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
AV+LFE+M+ + PNHVTFLAVLSAC+ SGLSE+GWEIF SMS H IKPRAMHYACMI
Sbjct: 410 AVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMI 469
Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
ELLGR+GLLDEA A IR AP KTT NMWAALL ACR+ NLELG+ AEKLYGM PEKL
Sbjct: 470 ELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLG 529
Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ--SHVQT 594
NYVV+ N+YNS GK EAA V+ TL KGL M+PAC+W+EV Q H FLSGD+ S+ +T
Sbjct: 530 NYVVMYNMYNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNET 589
Query: 595 --KEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDW 651
++IY+KVD +M EIS++GY EE+ LLPDVDE +E+RV YHSEKLA+A+GL+NT +W
Sbjct: 590 VKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEW 649
Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
PLQI Q+HRIC +CH ++ I++VTGRE+VVRDASRFHHFK+G CSCG YW
Sbjct: 650 NPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 227/575 (39%), Positives = 360/575 (62%)
Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
T+ ++ A +GL +++ + ++TGF D + N++L + + +++ R LFDEM
Sbjct: 252 TFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEM 311
Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
PE + VS N++I+ + Y + F ++ D + FATM+ +A L + +G+
Sbjct: 312 PELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGR 371
Query: 252 QLHSCALKMGFGDNVF-VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
QLH C + D++ V +L+DMY+KC E+A+ +F + ++TTV W +I+GY
Sbjct: 372 QLH-CQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQK 430
Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
G L L+ +MR S ++ D TF+ +++ ASL KQ HA ++R G ++ +
Sbjct: 431 GLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSG 490
Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
S LVD Y+K G I+DA VF++M +N +SWNALI+ + ++G GE A+ F +M+ +G++
Sbjct: 491 SGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQ 550
Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
P+ V+ L VL+ACS G E+G E FQ+MS + I P+ HYACM++LLGR G EA
Sbjct: 551 PDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEK 610
Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSG 549
L+ PF+ + MW+++L ACR++ N L + AAEKL+ ME + + YV + NIY ++G
Sbjct: 611 LMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAG 670
Query: 550 KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609
+ ++ +V + +R +G++ +PA SW+EV + HVF S DQ+H EI RK++ + EI
Sbjct: 671 EWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIE 730
Query: 610 KHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHN 668
+ GY P+ +++ DVDEQ + L YHSE+LAVAF LI+T + P+ ++++ R C DCH
Sbjct: 731 REGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHA 790
Query: 669 AIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
AIKLI+ + REI VRD SRFHHF +G+CSCGDYW
Sbjct: 791 AIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
|
| TAIR|locus:2091546 AT3G13770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
Identities = 216/580 (37%), Positives = 356/580 (61%)
Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
++G YDAL++AC+ R++R+ +RV ++M+ T + P Y+R R+L+ + +C + DAR+
Sbjct: 49 EMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARK 108
Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
+ DEMPE+N+VS +I+ +G EA +F ++ TFAT++ +
Sbjct: 109 VLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASG 168
Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
+ +GKQ+H +K + ++FV +L+DMY+K G I++A+ +F+ + E+ V IIAG
Sbjct: 169 LGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAG 228
Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
YA G EEAL++++ + G+ ++ T++ ++ + LA L+H KQAH ++R
Sbjct: 229 YAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFY 288
Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML- 425
V ++L+D YSK G + AR +FD M + ISWNA++ GY HG G E +ELF M
Sbjct: 289 AVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRD 348
Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM-SRDHKIKPRAMHYACMIELLGREGL 484
++P+ VT LAVLS CS + + G IF M + ++ KP HY C++++LGR G
Sbjct: 349 EKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGR 408
Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
+DEAF I+ P K T + +LL ACRV+ ++++G+ +L +EPE NYV+L N+
Sbjct: 409 IDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNL 468
Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
Y S+G+ + V + +K + P SWI+ ++ H F + D++H + +E+ K+ +
Sbjct: 469 YASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEI 528
Query: 605 MLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
+++ + GYVP+ +L DVDE Q++++L HSEKLA+ FGLI T + P+++ ++ RIC
Sbjct: 529 SIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRIC 588
Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
DCHN K+ + V RE+ +RD +RFH DG+CSCGDYW
Sbjct: 589 VDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1095 (390.5 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
Identities = 222/588 (37%), Positives = 354/588 (60%)
Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTG-FEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
T +++ AC L +R K + +Y L G + + ++ + ++ M+ C ++ RR+FD
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363
Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD--CGSRTFATMIRASAGLELIS 248
M +R + N +IAG + EA LLF+ + EE + S T A ++ A S
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGM-EESAGLLANSTTMAGVVPACVRSGAFS 422
Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
+ +H +K G + FV L+DMYS+ G I+ A +F +M ++ V WNT+I GY
Sbjct: 423 RKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482
Query: 309 LHGYSEEALDLYYEMRD------SG-----VKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
+ E+AL L ++M++ G +K + T I+ C L++L K+ HA
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 542
Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
+++ D+ SALVD Y+K G ++ +R VFD++ KNVI+WN +I YG HG G+EA
Sbjct: 543 AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEA 602
Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
++L M++ G++PN VTF++V +ACS SG+ + G IF M D+ ++P + HYAC+++
Sbjct: 603 IDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVD 662
Query: 478 LLGREGLLDEAFALIRGAPFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
LLGR G + EA+ L+ P K W++LL A R++ NLE+G+ AA+ L +EP S
Sbjct: 663 LLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVAS 722
Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
+YV+L NIY+S+G +A EV R ++ +G+R P CSWIE + H F++GD SH Q+++
Sbjct: 723 HYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEK 782
Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQ 655
+ ++ + + K GYVP+ +L +V+E E+ +L HSEKLA+AFG++NTS T ++
Sbjct: 783 LSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIR 842
Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
+ ++ R+C DCH A K I+ + REI++RD RFH FK+G CSCGDYW
Sbjct: 843 VAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 221/572 (38%), Positives = 350/572 (61%)
Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
T +++ A LR I K + Y + +GF+ + + ++ M+ +CG + AR+LFD M
Sbjct: 238 TIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM 297
Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
ERN+VS N +I + + + EA L+F + +E + + A A L + G+
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357
Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
+H ++++G NV V +LI MY KC ++ A +F ++ +T V WN +I G+A +G
Sbjct: 358 FIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNG 417
Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
+AL+ + +MR VK D FT+ +I L+ HAK H ++R ++ +
Sbjct: 418 RPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTT 477
Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
ALVD Y+K G I AR +FD M ++V +WNA+I GYG HG G+ A+ELFE+M ++P
Sbjct: 478 ALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKP 537
Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
N VTFL+V+SACS SGL E G + F M ++ I+ HY M++LLGR G L+EA+
Sbjct: 538 NGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDF 597
Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
I P K N++ A+L AC+++ N+ + AAE+L+ + P+ +V+L NIY ++
Sbjct: 598 IMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMW 657
Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
++ +V ++ R+GLR P CS +E+K + H F SG +H +K+IY +++++ I +
Sbjct: 658 EKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEA 717
Query: 612 GYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
GYVP+ +L ++ ++++LS HSEKLA++FGL+NT+ T + + ++ R+C DCHNA K
Sbjct: 718 GYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATK 777
Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
I++VTGREIVVRD RFHHFK+G CSCGDYW
Sbjct: 778 YISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
Identities = 226/576 (39%), Positives = 355/576 (61%)
Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
S+TY LI CI R++ E + ++ G P +++ N ++ M+V+ ++ DA +LFD
Sbjct: 61 SATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFD 120
Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
+MP+RN++S +I+ + +A L + + + T+++++R+ G+ +
Sbjct: 121 QMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV-- 178
Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
+ LH +K G +VFV ALID+++K G EDA VFDEM + WN+II G+A
Sbjct: 179 -RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQ 237
Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
+ S+ AL+L+ M+ +G + T + ++R CT LA LE QAH +V+ + D++
Sbjct: 238 NSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLIL 295
Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
N+ALVD Y K G +EDA VF++M ++VI+W+ +I+G +G +EA++LFE+M +G
Sbjct: 296 NNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGT 355
Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
+PN++T + VL ACS +GL E GW F+SM + + I P HY CMI+LLG+ G LD+A
Sbjct: 356 KPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAV 415
Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
L+ + W LL ACRV N+ L ++AA+K+ ++PE Y +L NIY +S
Sbjct: 416 KLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQ 475
Query: 550 KLKEAAEVIRT-LRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
K ++ E IRT +R +G++ P CSWIEV KQ H F+ GD SH Q E+ +K+++++ +
Sbjct: 476 KW-DSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRL 534
Query: 609 SKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
+ GYVPE +L D++ EQ + L +HSEKLA+AFGL+ ++I ++ RIC DCH
Sbjct: 535 TGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCH 594
Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
KL + + R IV+RD R+HHF+DG CSCGDYW
Sbjct: 595 VFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1074 (383.1 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
Identities = 216/580 (37%), Positives = 354/580 (61%)
Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
S T +L+SAC + SY + G E +L++ N+++ ++ G + D +++FD
Sbjct: 247 SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFD 306
Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD--LWEEFSDCGSRTFATMIRASAGLELI 247
M R+L+S N II + L A LF + L DC T ++ + L I
Sbjct: 307 RMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDC--LTLISLASILSQLGDI 364
Query: 248 SVGKQLHSCALKMG-FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
+ + L+ G F +++ + A++ MY+K G ++ A+ VF+ + + WNTII+G
Sbjct: 365 RACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISG 424
Query: 307 YALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
YA +G++ EA+++Y M + G + + T+ ++ C++ +L + H L+++G L
Sbjct: 425 YAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL 484
Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
D+ ++L D Y K GR+EDA +F ++ N + WN LIA +G HG GE+AV LF++ML
Sbjct: 485 DVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML 544
Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
G++P+H+TF+ +LSACS SGL + G F+ M D+ I P HY CM+++ GR G L
Sbjct: 545 DEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQL 604
Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
+ A I+ + ++W ALL+ACRV+GN++LGK A+E L+ +EPE + +V+L N+Y
Sbjct: 605 ETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMY 664
Query: 546 NSSGKLKEAAEVIRTLRR-KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
S+GK E + IR++ KGLR P S +EV + VF +G+Q+H +E+YR++ +
Sbjct: 665 ASAGKW-EGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTAL 723
Query: 605 MLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
++ GYVP+ + +L DV D++++ +L HSE+LA+AF LI T T ++I ++ R+C
Sbjct: 724 QAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVC 783
Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
DCH+ K I+ +T REI+VRD++RFHHFK+G+CSCGDYW
Sbjct: 784 GDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1079 (384.9 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 212/528 (40%), Positives = 333/528 (63%)
Query: 179 GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238
G + +A++LFDE+P +++VS N +I+G ++G+Y EA LF D+ + T T++
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273
Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
A A I +G+Q+H GFG N+ + ALID+YSKCG +E A G+F+ + K +
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333
Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
WNT+I GY +EAL L+ EM SG + T I+ C L +++ + H +
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393
Query: 359 VRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
+ G+ ++ ++L+D Y+K G IE A VF+ +L K++ SWNA+I G+ HGR +
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453
Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
+ +LF +M G++P+ +TF+ +LSACS SG+ + G IF++M++D+K+ P+ HY CMI
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513
Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
+LLG GL EA +I + +W +LL AC+++GN+ELG+ AE L +EPE
Sbjct: 514 DLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPG 573
Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
+YV+L NIY S+G+ E A+ L KG++ +P CS IE+ H F+ GD+ H + +E
Sbjct: 574 SYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 633
Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQ 655
IY ++ M + + K G+VP+ +L +++E+ ++ L +HSEKLA+AFGLI+T T L
Sbjct: 634 IYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLT 693
Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
IV++ R+C +CH A KLI+ + REI+ RD +RFHHF+DG+CSC DYW
Sbjct: 694 IVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
Identities = 218/559 (38%), Positives = 337/559 (60%)
Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
I + K+VF Y L + + M N ++ + CGM+ DA +LF M E++ VS +I G
Sbjct: 190 ISDAKKVF-YGLD---DRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKG 244
Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
+ +G EA F ++ + F +++ A GL I+ GKQ+H+C ++ F D+
Sbjct: 245 LAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDH 304
Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
++V ALIDMY KC + A+ VFD M +K V W ++ GY G +EEA+ ++ +M+
Sbjct: 305 IYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQR 364
Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
SG+ DH+T I C ++SLE Q H + G + +++LV Y K G I+D
Sbjct: 365 SGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDD 424
Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
+ +F++M ++ +SW A+++ Y GR E ++LF++M+ +G++P+ VT V+SACSR
Sbjct: 425 STRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSR 484
Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
+GL E+G F+ M+ ++ I P HY+CMI+L R G L+EA I G PF W
Sbjct: 485 AGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWT 544
Query: 506 ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
LL+ACR GNLE+GK+AAE L ++P + Y +L +IY S GK A++ R +R K
Sbjct: 545 TLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKN 604
Query: 566 LRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD 625
++ P SWI+ K + H F + D+S +IY K++ + +I +GY P+ + DV+
Sbjct: 605 VKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVE 664
Query: 626 EQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVR 684
E + ++L+YHSE+LA+AFGLI P+++ ++ R+C DCHNA K I+ VTGREI+VR
Sbjct: 665 EAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVR 724
Query: 685 DASRFHHFKDGMCSCGDYW 703
DA RFH FKDG CSCGD+W
Sbjct: 725 DAVRFHRFKDGTCSCGDFW 743
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 216/583 (37%), Positives = 350/583 (60%)
Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
S++ I AC L I K+ G++ D+++ + +++M+ CG + DAR++FDE
Sbjct: 77 SSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDE 136
Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF------ATMIRASAGL 244
+P+RN+VS +I G +G+ L+A LF DL + +D F ++I A + +
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196
Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS--IEDAQGVFDEMSEKTTVGWNT 302
+ + +HS +K GF V V L+D Y+K G + A+ +FD++ +K V +N+
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256
Query: 303 IIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
I++ YA G S EA +++ + ++ V + T S ++ + +L K H ++R
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316
Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
G D++ ++++D Y K GR+E AR FD+M KNV SW A+IAGYG HG +A+ELF
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELF 376
Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
M+ +G+RPN++TF++VL+ACS +GL GW F +M ++P HY CM++LLGR
Sbjct: 377 PAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGR 436
Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
G L +A+ LI+ K +W++LL ACR++ N+EL + + +L+ ++ Y++L
Sbjct: 437 AGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLL 496
Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
+IY +G+ K+ V ++ +GL P S +E+ + HVFL GD+ H Q ++IY +
Sbjct: 497 SHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFL 556
Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
+ ++ + GYV ++ DVDE+E+ + L HSEKLA+AFG++NT + + +V++
Sbjct: 557 AELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNL 616
Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
R+C DCHN IKLI+ + RE VVRDA RFHHFKDG CSCGDYW
Sbjct: 617 RVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FK33 | PP427_ARATH | No assigned EC number | 0.6404 | 0.9843 | 0.9871 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 703 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.0 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-146 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-60 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-59 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-40 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 1158 bits (2997), Expect = 0.0
Identities = 479/708 (67%), Positives = 563/708 (79%), Gaps = 16/708 (2%)
Query: 1 MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
MEIPL RYQS+ LD+I++S S + + FSL R+ K F + C
Sbjct: 1 MEIPLARYQSIRLDEIRDSLSNPRLLHSPRK-----------FSLRGRRTKTPFSSISCS 49
Query: 61 LMEQGLKPRPK----PNKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALEL 116
+EQGLKPRP+ P +I E K++ L DTQ++K +CSQIEKLV R+REALEL
Sbjct: 50 SVEQGLKPRPRLKPEPIRIEVSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALEL 109
Query: 117 FEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV 176
FEILE F + +STYDAL+ ACI L+SIR VK V+ ++ S+GFEPD YM NRVLLMHV
Sbjct: 110 FEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169
Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
+CGM+IDARRLFDEMPERNL S II G++D+G+Y EAF LF ++WE+ SD RTF
Sbjct: 170 KCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV 229
Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
M+RASAGL G+QLH C LK G + FVSCALIDMYSKCG IEDA+ VFD M EKT
Sbjct: 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289
Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
TV WN+++AGYALHGYSEEAL LYYEMRDSGV +D FTFS++IRI +RLA LEHAKQAHA
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
GL+R GF LDIVAN+ALVD YSKWGR+EDAR+VFD+M KN+ISWNALIAGYGNHGRG +
Sbjct: 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTK 409
Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
AVE+FE+M+ G+ PNHVTFLAVLSAC SGLSE+GWEIFQSMS +H+IKPRAMHYACMI
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469
Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
ELLGREGLLDEA+A+IR APFK T NMWAALLTACR++ NLELG+ AAEKLYGM PEKL+
Sbjct: 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529
Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
NYVVLLN+YNSSG+ EAA+V+ TL+RKGL M PAC+WIEVKKQ H F SGD+ H Q++E
Sbjct: 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589
Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLS-YHSEKLAVAFGLINTSDWTPLQ 655
IY+K+D +M EIS++GYV EE LLPDVDE E++V YHSEKLA+AFGLINTS+WTPLQ
Sbjct: 590 IYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQ 649
Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
I QSHRIC DCH IK IA+VT REIVVRDASRFHHFK G CSCGDYW
Sbjct: 650 ITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 446 bits (1149), Expect = e-146
Identities = 220/591 (37%), Positives = 341/591 (57%), Gaps = 5/591 (0%)
Query: 112 EALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
E LELF + E D T ++ISAC L R + + Y++ TGF D+ + N
Sbjct: 271 EGLELFFTMRELS--VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328
Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
++ M++ G +A ++F M ++ VS +I+G +G +A + + ++
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
T A+++ A A L + VG +LH A + G V V+ ALI+MYSKC I+ A VF
Sbjct: 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448
Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
+ EK + W +IIAG L+ EAL + +M + +K + T + C R+ +L
Sbjct: 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMC 507
Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
K+ HA ++R G G D +AL+D Y + GR+ A + F+ K+V+SWN L+ GY
Sbjct: 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVA 566
Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
HG+G AVELF +M+ +G+ P+ VTF+++L ACSRSG+ +G E F SM + I P
Sbjct: 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626
Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
HYAC+++LLGR G L EA+ I P +W ALL ACR++ ++ELG+ AA+ ++ +
Sbjct: 627 HYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686
Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
+P + Y++L N+Y +GK E A V +T+R GL + P CSW+EVK + H FL+ D+S
Sbjct: 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746
Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSD 650
H Q KEI ++ ++ G E + + +++ + + HSE+LA+AFGLINT
Sbjct: 747 HPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVP 806
Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
P+ + ++ +C +CHN +K I+ + REI VRD +FHHFKDG CSCGD
Sbjct: 807 GMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (553), Expect = 4e-60
Identities = 126/426 (29%), Positives = 218/426 (51%), Gaps = 23/426 (5%)
Query: 99 SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
SQ+ L + + +AL+L E ++ E V Y AL C R++ E RV S LS
Sbjct: 56 SQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
+ + + N +L M VR G ++ A +F +MPER+L S N+++ G +G + EA
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA--- 171
Query: 219 FLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
L L+ G R TF ++R G+ ++ G+++H+ ++ GF +V V ALI
Sbjct: 172 -LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
MY KCG + A+ VFD M + + WN +I+GY +G E L+L++ MR+ V D T
Sbjct: 231 MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290
Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
+ +I C L ++ H +V+ GF +D+ ++L+ Y G +A VF +M
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
K+ +SW A+I+GY +G ++A+E + M + + P+ +T +VLSAC+ G + G +
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 455 IFQSMSRDHK--IKPRAMHYAC----MIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
+ H+ + + Y +IE+ + +D+A + P K + W +++
Sbjct: 411 L-------HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS-WTSII 462
Query: 509 TACRVN 514
R+N
Sbjct: 463 AGLRLN 468
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 5e-59
Identities = 112/324 (34%), Positives = 176/324 (54%), Gaps = 1/324 (0%)
Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
T+ ++ C G+ + + V ++++ GFE D+ + N ++ M+V+CG ++ AR +FD M
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248
Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
P R+ +S N +I+G ++G+ LE LF + E D T ++I A L +G+
Sbjct: 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308
Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
++H +K GF +V V +LI MY GS +A+ VF M K V W +I+GY +G
Sbjct: 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368
Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
++AL+ Y M V D T + ++ C L L+ + H R G +V +
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
AL++ YSK I+ A VF + K+VISW ++IAG + R EA+ F QMLL ++P
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKP 487
Query: 432 NHVTFLAVLSACSRSGLSERGWEI 455
N VT +A LSAC+R G G EI
Sbjct: 488 NSVTLIAALSACARIGALMCGKEI 511
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 1e-40
Identities = 113/398 (28%), Positives = 183/398 (45%), Gaps = 42/398 (10%)
Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
+ G +A L + E + + R + G ++ S AL
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
V + A++ M+ + G + A VF +M E+ WN ++ GYA GY +EAL LY+ M
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML 179
Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
+GV+ D +TF ++R C + L ++ HA +VR GF LD+ +AL+ Y K G +
Sbjct: 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239
Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
AR VFD+M ++ ISWNA+I+GY +G E +ELF M + P+ +T +V+SAC
Sbjct: 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299
Query: 445 RSGLSERGWEIFQ-------------------------SMSRDHKIKPR-----AMHYAC 474
G G E+ S K+ R A+ +
Sbjct: 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359
Query: 475 MIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM- 530
MI + GL D+A +AL+ + A++L+AC G+L++G KL+ +
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV----KLHELA 415
Query: 531 EPEKLSNYVV----LLNIYNSSGKLKEAAEVIRTLRRK 564
E + L +YVV L+ +Y+ + +A EV + K
Sbjct: 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 2e-23
Identities = 57/131 (43%), Positives = 69/131 (52%), Gaps = 22/131 (16%)
Query: 570 PACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ 629
P C W E KK LSGD SH +KE + I G VPE K + DVD +E
Sbjct: 1 PGCVWSEGKK----TLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 630 R-------VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
R +L+ H+EK A+A+GL T I R+C DCH + IA TGREI+
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGL-----LTTRIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 683 VRDASRFHHFK 693
VRD SRFHHFK
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 8e-17
Identities = 43/151 (28%), Positives = 77/151 (50%)
Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
S +T N+ + HG E+AL L M++ V +D + + R+C ++E
Sbjct: 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGS 106
Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
+ + + L + +A++ + ++G + A +VF KM +++ SWN L+ GY G
Sbjct: 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG 166
Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
+EA+ L+ +ML G+RP+ TF VL C
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTC 197
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 6e-13
Identities = 55/269 (20%), Positives = 117/269 (43%), Gaps = 14/269 (5%)
Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT----VGWNTIIAGYALHGYSEEALDLY 320
NV ALID ++ G + A G + M K V +N +I+ G + A D+
Sbjct: 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565
Query: 321 YEMRDSG--VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
EM+ + DH T +++ C ++ AK+ + + + + V+ S
Sbjct: 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
Query: 379 KWGRIEDARHVFDKMLCKNV----ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
+ G + A ++D M K V + ++AL+ G+ G ++A E+ + G++ V
Sbjct: 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685
Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL--- 491
++ +++ ACS + ++ E+++ + + K++P +I L L +A +
Sbjct: 686 SYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744
Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELG 520
++ ++ LL A + ++G
Sbjct: 745 MKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 3e-12
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
+V+++N LI GY G+ EEA++LF +M G++PN T+ ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 1e-11
Identities = 55/249 (22%), Positives = 120/249 (48%), Gaps = 19/249 (7%)
Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
TF+M++ +C ++ A + + G D + L+ +K G+++ VF +M
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 394 LCK----NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
+ NV ++ ALI G G+ +A + M ++P+ V F A++SAC +SG
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 450 ERGWEIFQSM-SRDHKIKPRAMHYACMIELLGREGLLD---EAFALIRGAPFKTTKNMWA 505
+R +++ M + H I P + +++ G +D E + +I K T ++
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618
Query: 506 ALLTACRVNGNLELGKFAAEKLY------GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
+ +C G+ + A +Y G++P+++ + L+++ +G L +A E+++
Sbjct: 619 IAVNSCSQKGDWDF----ALSIYDDMKKKGVKPDEVF-FSALVDVAGHAGDLDKAFEILQ 673
Query: 560 TLRRKGLRM 568
R++G+++
Sbjct: 674 DARKQGIKL 682
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 69/310 (22%), Positives = 139/310 (44%), Gaps = 24/310 (7%)
Query: 277 SKCGSIEDAQGVFDEMSEKTTVG-------WNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
S C S +D G + G + T+I+ A G + ++++EM ++GV+
Sbjct: 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE 504
Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
+ TF +I C R + A A+ + D V +AL+ + G ++ A V
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564
Query: 390 FDKMLCK------NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
+M + + I+ AL+ N G+ + A E+++ + ++ + +++C
Sbjct: 565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624
Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN- 502
S+ G + I+ M + +KP + ++ ++++ G G LD+AF +++ A + K
Sbjct: 625 SQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683
Query: 503 --MWAALLTACRVNGN----LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
+++L+ AC N LEL + K + P +S L+ +L +A E
Sbjct: 684 TVSYSSLMGACSNAKNWKKALEL--YEDIKSIKLRP-TVSTMNALITALCEGNQLPKALE 740
Query: 557 VIRTLRRKGL 566
V+ ++R GL
Sbjct: 741 VLSEMKRLGL 750
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
V +NT+I GY G EEAL L+ EM+ G+K + +T+S++I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 7e-08
Identities = 85/382 (22%), Positives = 155/382 (40%), Gaps = 55/382 (14%)
Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
AL + +++ E G Y LIS C + + VF M++ G E +++ ++
Sbjct: 456 ALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514
Query: 173 LMHVRCGMMIDARRLFDEMPERNL----VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
R G + A + M +N+ V N +I+ SG AF + ++ E
Sbjct: 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE--- 571
Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
I + I+VG + +CA G ++ A+ V
Sbjct: 572 ------THPIDP----DHITVGALMKACA--------------------NAGQVDRAKEV 601
Query: 289 FDEMSE---KTTVGWNTIIAGYALHGYS-----EEALDLYYEMRDSGVKMDHFTFSMIIR 340
+ + E K T TI A++ S + AL +Y +M+ GVK D FS ++
Sbjct: 602 YQMIHEYNIKGTPEVYTI----AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM----LCK 396
+ L+ A + + G L V+ S+L+ S + A +++ + L
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
V + NALI + +A+E+ +M G+ PN +T+ +L A R ++ G ++
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777
Query: 457 QSMSRDHKIKPRAMHYACMIEL 478
S +++ IKP + C+ L
Sbjct: 778 -SQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 7e-06
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
+++N LI G GR EEA+ELF++M G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 8e-06
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
+++N+LI+GY G+ EEA+ELF++M G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
K L +V+++N LI G GR +EAVEL ++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGV 328
+N++I+GY G EEAL+L+ EM++ GV
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 44/229 (19%), Positives = 98/229 (42%), Gaps = 33/229 (14%)
Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
G++ + + ++S C++SG + +E+F M + ++ + +I+ R G + +
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAK 525
Query: 488 AFA---LIRGAPFKTTKNMWAALLTACRVNGNLE-----LGKFAAEKLYGMEPEKLSNYV 539
AF ++R K + ++ AL++AC +G ++ L + AE + ++P+ ++
Sbjct: 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET-HPIDPDHIT-VG 583
Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK--EI 597
L+ ++G++ A EV + + ++ P I V S Q +
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV-----------NSCSQKGDWDF 632
Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLI 646
+ M + G P+E VD ++ H+ L AF ++
Sbjct: 633 ALSIYDDMKKK---GVKPDEVFFSALVD------VAGHAGDLDKAFEIL 672
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
+NT+I G G EEAL+L+ EM++ G++ D
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 6e-04
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCK----NVISWNALIAGYGN 410
D+V + L+D Y K G++E+A +F++M + NV +++ LI G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 703 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.69 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.57 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.57 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.49 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.48 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.47 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.47 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.47 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.45 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.38 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.35 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.34 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.33 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.33 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.3 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.3 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.28 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.28 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.24 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.2 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.19 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.19 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.12 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.08 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.03 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.03 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.01 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.0 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.99 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.97 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.94 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.93 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.92 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.88 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.85 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.84 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.83 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.8 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.78 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.75 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.74 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.74 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.69 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.64 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.63 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.62 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.61 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.59 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.54 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.53 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.51 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.49 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.49 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.48 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.45 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.44 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.43 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.41 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.33 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.33 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.3 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.29 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.27 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.25 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.24 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.19 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.19 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.18 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.13 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.11 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.09 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.03 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.03 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.01 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.01 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.0 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.96 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.95 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.94 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.89 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.88 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.88 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.81 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.8 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.79 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.75 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.64 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.59 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.55 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.51 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.51 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.45 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.38 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.36 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.36 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.35 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.34 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.31 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.3 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.29 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.24 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.22 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.17 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.17 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.16 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.11 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.08 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.07 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.06 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.05 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.99 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.99 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.95 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.9 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.89 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.85 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.82 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.8 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.77 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.71 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.71 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.66 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.64 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.64 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.64 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.61 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.61 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.61 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.6 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.59 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.59 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.48 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.4 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.38 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.38 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.38 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.3 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.28 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.26 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.24 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.2 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.18 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.17 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.12 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.1 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.91 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.91 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.87 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.86 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.85 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.83 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.81 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.74 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.69 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.34 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.32 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.24 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.1 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.09 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.0 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.99 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.97 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.82 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.72 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.6 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.53 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.44 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.32 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.25 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 93.98 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.87 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.84 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.84 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.75 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.4 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.3 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.26 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.24 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.15 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.96 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.86 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.82 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.48 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.45 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.11 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.94 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.92 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.77 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.54 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.45 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.43 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.27 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.25 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.08 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.88 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.8 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.27 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.21 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.01 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.83 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.76 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 89.74 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.71 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.52 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.99 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.87 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 88.83 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.81 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.49 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.69 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.62 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.37 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 87.07 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.85 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.82 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.74 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.67 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.66 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.11 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.1 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.67 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.28 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.21 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.96 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.73 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 84.5 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.23 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 84.2 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 83.96 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 83.37 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.29 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.02 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 82.83 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.78 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 82.68 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.33 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 81.84 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 81.8 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.72 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.74 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.14 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 80.13 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-128 Score=1125.80 Aligned_cols=669 Identities=33% Similarity=0.579 Sum_probs=645.6
Q ss_pred cchhHHHhhccccCccccchhhhHHHHhhcccccchhhhhccccccchhhhhhhccccccCCCCcccchhhcccccCccC
Q 005305 11 VALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQM 90 (703)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~ 90 (703)
..+..++++|.....+..|+.+++..+..+. ..+++++|+||++|+|+|++++| +++|++|+.
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~--------------~~~~~~~n~Li~~y~k~g~~~~A---~~lf~~m~~ 250 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGF--------------ELDVDVVNALITMYVKCGDVVSA---RLVFDRMPR 250 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCC--------------CcccchHhHHHHHHhcCCCHHHH---HHHHhcCCC
Confidence 3456667777766666666666655443332 23889999999999999999999 999999998
Q ss_pred CCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHH
Q 005305 91 KKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169 (703)
Q Consensus 91 ~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~ 169 (703)
+ |.++||+||. |++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||
T Consensus 251 ~--d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 251 R--DCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred C--CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 7 9999999999 999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHH
Q 005305 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249 (703)
Q Consensus 170 ~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 249 (703)
+|+++|+++|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCC
Q 005305 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329 (703)
Q Consensus 250 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 329 (703)
|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 699
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHH
Q 005305 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409 (703)
Q Consensus 330 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 409 (703)
||..||+++|.+|++.|+++.+.++|..+.+.|+.+|..++|+||++|+|+|++++|.++|+.+ .+|+++||+||.+|+
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYV 565 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 005305 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (703)
++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+|+|++++|.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999977999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 005305 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRML 569 (703)
Q Consensus 490 ~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~ 569 (703)
+++++|+.+||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|+.|+++|++.|+|++|.++++.|+++|++|.
T Consensus 646 ~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 646 NFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHHcCcccCCCccCCCchHHHHHHHhhhhHHHHHHhcccCCC
Q 005305 570 PACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTS 649 (703)
Q Consensus 570 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~e~la~~~~l~~~~ 649 (703)
||+|||++++.+|.|++||.+||+.++||+.++++..+|++.||+||+..++++.+++|+..+++||||||++|||+++|
T Consensus 726 ~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~~ 805 (857)
T PLN03077 726 PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTV 805 (857)
T ss_pred CCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999998886533399999999999999999999999
Q ss_pred CCCcEEEEecccccCcchHHHHHHhhhcCceEEEecCCccccccccccCCCC
Q 005305 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701 (703)
Q Consensus 650 ~~~~~~~~k~l~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~csc~~ 701 (703)
+|+||||+||||+|+|||+++|+||++++|+|||||.+|||||+||+|||+|
T Consensus 806 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 806 PGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-126 Score=1080.13 Aligned_cols=611 Identities=71% Similarity=1.149 Sum_probs=603.6
Q ss_pred CCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHH
Q 005305 93 PSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171 (703)
Q Consensus 93 p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~L 171 (703)
++.++|+.+|. +.+.|++++|+++|+.|...+++.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 37789999999 99999999999999999987557899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHH
Q 005305 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251 (703)
Q Consensus 172 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 251 (703)
+++|+++|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCC
Q 005305 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331 (703)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 331 (703)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhc
Q 005305 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411 (703)
Q Consensus 332 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 411 (703)
..||++++.+|++.|.++.|.++|+.+.+.|+.||..++|+||++|+|+|++++|.++|++|.++|+++||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 005305 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491 (703)
Q Consensus 412 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 491 (703)
|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++||++|+++|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998789999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCc
Q 005305 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571 (703)
Q Consensus 492 ~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~ 571 (703)
|++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|+++.+|+.|+++|++.|+|++|.++++.|+++|+++.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHHcCcccCCCccCCCchH-HHHHHHhhhhHHHHHHhcccCCCC
Q 005305 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSD 650 (703)
Q Consensus 572 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~-~~~~~~~~~~e~la~~~~l~~~~~ 650 (703)
+||+++++.+|.|++||.+||+.++||+++.++..+|++.||+||+.+++|++++ +|+..+.+||||||++|||+++|+
T Consensus 565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~ 644 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSE 644 (697)
T ss_pred eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCcEEEEecccccCcchHHHHHHhhhcCceEEEecCCccccccccccCCCCCC
Q 005305 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703 (703)
Q Consensus 651 ~~~~~~~k~l~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~csc~~~w 703 (703)
|+||||+||||+|+|||+|+|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 645 ~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 645 WTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-79 Score=716.59 Aligned_cols=614 Identities=24% Similarity=0.348 Sum_probs=541.9
Q ss_pred chhhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 005305 57 VECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDA 135 (703)
Q Consensus 57 ~~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 135 (703)
.+++++|+||++|+++|++..| +++|++|+++ |+++||++|. |++.|++++|+++|++|...| +.||.+||++
T Consensus 119 ~~~~~~n~li~~~~~~g~~~~A---~~~f~~m~~~--d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ 192 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGELVHA---WYVFGKMPER--DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPC 192 (857)
T ss_pred CCchHHHHHHHHHHhCCChHHH---HHHHhcCCCC--CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHH
Confidence 4778999999999999999999 9999999987 9999999999 999999999999999999998 9999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHH
Q 005305 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215 (703)
Q Consensus 136 ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 215 (703)
++++|+..+++..+.++|..+++.|+.||+.++|+||++|+++|++++|+++|++|++||+++||+||.+|++.|++++|
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 005305 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295 (703)
Q Consensus 216 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~ 295 (703)
+++|++|...|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHh
Q 005305 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375 (703)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 375 (703)
|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||+
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHH
Q 005305 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455 (703)
Q Consensus 376 ~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 455 (703)
+|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. ++.||.+||+++|.+|++.|.++.+.++
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 999999999999999999999999999999999999999999999999986 6999999999999999999999999999
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhC--CCCC
Q 005305 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG--MEPE 533 (703)
Q Consensus 456 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~--~~p~ 533 (703)
+..+.+ .|+.++..++++||++|+++|++++|.++|+++ +||..+|++|+.+|.++|+.++|..+++++.+ ..|+
T Consensus 512 ~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 512 HAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 999998 799999999999999999999999999999999 78999999999999999999999999999874 5676
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHH-hCCCccCCceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHHcC
Q 005305 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLR-RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612 (703)
Q Consensus 534 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g 612 (703)
..+|..++.+|++.|++++|.++|+.|. +.|+.+.... +. .++......+..++ +.+++++| +
T Consensus 589 -~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~-y~-------~lv~~l~r~G~~~e----A~~~~~~m---~ 652 (857)
T PLN03077 589 -EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH-YA-------CVVDLLGRAGKLTE----AYNFINKM---P 652 (857)
T ss_pred -cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH-HH-------HHHHHHHhCCCHHH----HHHHHHHC---C
Confidence 6899999999999999999999999998 6777543211 10 00111111222233 34555554 5
Q ss_pred cccCCCccCCCchH-HHHHHHhhhhHHHH-HHhcccCCCCCCcEEEEecccccCcchHHHHHHhhhcCceE--------E
Q 005305 613 YVPEEKTLLPDVDE-QEQRVLSYHSEKLA-VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREI--------V 682 (703)
Q Consensus 613 ~~p~~~~~~~~~~~-~~~~~~~~~~e~la-~~~~l~~~~~~~~~~~~k~l~~~~~~~~~~~~~s~~~~~~i--------~ 682 (703)
+.||...+...+.. ...+.+ .-.|+.+ ..+.+.+...+..+.+..-+...|+-.++.+....|..+.+ |
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~-e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHV-ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 78987765443333 111000 0011222 12334444444444444455678899999999988876632 2
Q ss_pred EecCCccccccccccC
Q 005305 683 VRDASRFHHFKDGMCS 698 (703)
Q Consensus 683 ~~d~~~~h~~~~g~cs 698 (703)
.- .+..|-|.-|--|
T Consensus 732 e~-~~~~~~f~~~d~~ 746 (857)
T PLN03077 732 EV-KGKVHAFLTDDES 746 (857)
T ss_pred EE-CCEEEEEecCCCC
Confidence 21 3567788665443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=594.65 Aligned_cols=502 Identities=18% Similarity=0.240 Sum_probs=461.4
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCC---CCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhH
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMK---KPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTY 133 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~---~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~ 133 (703)
+...+..+++.+.++|++.+| .++|++|+.+ .++...++.++. +.+.|..++|+.+|+.|. .||..+|
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eA---l~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Ty 440 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDC---IDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTF 440 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHH---HHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHH
Confidence 556777888888899999999 9999999987 233445566778 999999999999999885 3899999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCC----CCCcccHHHHHHHHHhC
Q 005305 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP----ERNLVSCNMIIAGMIDS 209 (703)
Q Consensus 134 ~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~ 209 (703)
+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998 48999999999999999
Q ss_pred CChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 005305 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK--MGFGDNVFVSCALIDMYSKCGSIEDAQG 287 (703)
Q Consensus 210 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 287 (703)
|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|..|.+ .|+.||..+|++|+.+|+++|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 6789999999999999999999999999
Q ss_pred HHhhcCC----CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005305 288 VFDEMSE----KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363 (703)
Q Consensus 288 ~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 363 (703)
+|++|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999976 466899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhc----CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKM----LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 439 (703)
.||..+|++||++|+++|++++|.++|++| ..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+++
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999999999999999999 4699999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHH----hcC-------------------ChHHHHHHHHhC-
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG----REG-------------------LLDEAFALIRGA- 495 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~m- 495 (703)
+.+|++.|++++|.++|+.|.+ .|+.||..+|+++++++. +++ ..++|..+|++|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 9999999999999999999998 799999999999998743 232 346799999987
Q ss_pred --CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHh-CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCC
Q 005305 496 --PFKTTKNMWAALLTACRVNGNLELGKFAAEKLY-GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570 (703)
Q Consensus 496 --~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 570 (703)
++.||..+|+.++.++...+..+.+...++.+. .-.+.+..+|.+|++.+.+. .++|..++++|.+.|+.+..
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 568999999999977778888888888887654 22344578999999988432 36899999999999987654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=559.56 Aligned_cols=434 Identities=25% Similarity=0.387 Sum_probs=403.4
Q ss_pred chhHHHhhccccCccccchhhhHHHHhhcccccchhhhhccccccchhhhhhhccccccCCCCcccchhhcccccCccCC
Q 005305 12 ALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMK 91 (703)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~ 91 (703)
.+..++++|.....+..+..++......+ ...+++++|+|+++|+++|++++| +++|++|+.+
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g--------------~~~~~~~~n~Li~~y~k~g~~~~A---~~lf~~m~~~ 187 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSG--------------FEPDQYMMNRVLLMHVKCGMLIDA---RRLFDEMPER 187 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------------CCcchHHHHHHHHHHhcCCCHHHH---HHHHhcCCCC
Confidence 44555555655555554444444332222 234889999999999999999999 9999999976
Q ss_pred CCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHH
Q 005305 92 KPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170 (703)
Q Consensus 92 ~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 170 (703)
|.++||++|. |++.|++++|+++|++|.+.| +.||..||+.++.+|+..|+.+.++++|..+.+.|+.+|..++|+
T Consensus 188 --~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 188 --NLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred --CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 9999999999 999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHH
Q 005305 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250 (703)
Q Consensus 171 Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 250 (703)
||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCC
Q 005305 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330 (703)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 330 (703)
+++|..+.+.|+++|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC-cCChhhHHHHHHHH
Q 005305 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWNALIAGY 408 (703)
Q Consensus 331 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-~~~~~~~~~li~~~ 408 (703)
|..||+.+|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++|+ .||..+|++|+.+|
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999986 6999999999999999999999999999999995 68999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 468 (703)
..+|+.+.|..+++++.+ +.|+ ..+|+.+++.|++.|++++|.++++.|.+ .|+.+.
T Consensus 505 ~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k~ 562 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSMH 562 (697)
T ss_pred HHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCccC
Confidence 999999999999999875 5675 47899999999999999999999999987 677543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-61 Score=550.41 Aligned_cols=508 Identities=18% Similarity=0.224 Sum_probs=458.7
Q ss_pred CCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHH
Q 005305 92 KPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170 (703)
Q Consensus 92 ~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 170 (703)
++|...|..++. +.+.|++++|+++|++|.+.|.+.++..+++.++.+|.+.|.+++|..++..|.+ ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 567888999999 9999999999999999999884567888999999999999999999999998873 99999999
Q ss_pred HHHHHHhCCChHHHHHHHccCCC----CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCC
Q 005305 171 VLLMHVRCGMMIDARRLFDEMPE----RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246 (703)
Q Consensus 171 Li~~y~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 246 (703)
|+.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999975 89999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC------CCCcccHHHHHHHHHHcCCcHHHHHHH
Q 005305 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS------EKTTVGWNTIIAGYALHGYSEEALDLY 320 (703)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~------~~~~~~~~~li~~~~~~g~~~~A~~l~ 320 (703)
+++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999995 478999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC----cC
Q 005305 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML----CK 396 (703)
Q Consensus 321 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~ 396 (703)
++|.+.|++|+..+|+.+|.+|++.|++++|..+|+.|.+.|+.||..+|++|+++|++.|++++|.++|++|. .|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999994 57
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 476 (703)
|..+|++||.+|++.|++++|.++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-LGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987 79999999999999
Q ss_pred HHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHH-----------------------cCChhHHHHHHHHHh--
Q 005305 477 ELLGREGLLDEAFALIRGA---PFKTTKNMWAALLTACRV-----------------------NGNLELGKFAAEKLY-- 528 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~-----------------------~g~~~~a~~~~~~~~-- 528 (703)
.+|++.|++++|.+++++| +..||..+|++|+..|.+ .+..+.|..+++++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999987 568999999999987653 122467888888887
Q ss_pred CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHH
Q 005305 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608 (703)
Q Consensus 529 ~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m 608 (703)
++.|+ ..+|..++..+...+.++.+.++++.|...+..+... .+.. .+.|...+ ...+..++++|
T Consensus 842 Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~-~y~~-------Li~g~~~~------~~~A~~l~~em 906 (1060)
T PLN03218 842 GTLPT-MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS-NLST-------LVDGFGEY------DPRAFSLLEEA 906 (1060)
T ss_pred CCCCC-HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh-hhHH-------HHHhhccC------hHHHHHHHHHH
Confidence 45576 6899999999989999999999998887655432111 1110 11121111 13467899999
Q ss_pred HHcCcccCCCc
Q 005305 609 SKHGYVPEEKT 619 (703)
Q Consensus 609 ~~~g~~p~~~~ 619 (703)
.+.|+.|+.++
T Consensus 907 ~~~Gi~p~~~~ 917 (1060)
T PLN03218 907 ASLGVVPSVSF 917 (1060)
T ss_pred HHcCCCCCccc
Confidence 99999999863
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-28 Score=291.42 Aligned_cols=451 Identities=12% Similarity=0.051 Sum_probs=294.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 183 (703)
+...|++++|++.|+.+.+.. +.+......++..+...|++++|.+++..+.+.. +.+..++..+...|...|++++
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHH
Confidence 444444444444444444332 1122233334444445555555555555554432 3344555556666666666666
Q ss_pred HHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005305 184 ARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM 260 (703)
Q Consensus 184 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (703)
|.+.|+++.+ .+...+..+...+...|++++|.+.|+++...+. .+..++..+...+...|+.++|...+..+.+.
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666655432 2334455555566666666666666666654422 24445555566666666666666666666555
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHH
Q 005305 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337 (703)
Q Consensus 261 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 337 (703)
+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..
T Consensus 563 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 N-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred C-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 4 44455566666666666777777666666543 244567777777777777777777777776542 234455666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCH
Q 005305 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRG 414 (703)
Q Consensus 338 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 414 (703)
+..++...|++++|...+..+.+.. +.+...+..++..+.+.|++++|.++++.+.. .+...|..+...+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 6666677777777777777776643 23456667777777777777777777777632 3455677777777788888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
++|++.|+++... .|+..++..+..++.+.|+.++|.+.++.+.+ ..+.+...+..+...|.+.|+.++|.+.|++
T Consensus 720 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 720 PAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 8888888887774 45556667777788888888888888888776 3455677888888888888888888888887
Q ss_pred CC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 495 AP--FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 495 m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
+. .+++..++..+...+...|+ ++|...++++++..|+++..+..++.+|...|++++|.+.++++.+.+.
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 52 23466788888888888888 7788888888888888888888888889899999999999988887553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-28 Score=290.98 Aligned_cols=489 Identities=13% Similarity=0.052 Sum_probs=417.3
Q ss_pred hhhhhccccccCCCCcccchhhcccccCccCCCCC-cccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHH
Q 005305 60 CLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPS-AGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALI 137 (703)
Q Consensus 60 ~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~-~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll 137 (703)
..+..+...|.+.|+..+| .+.|.......|+ ...+..++. +.+.|++++|+.+++.+.... +++..++..+.
T Consensus 398 ~~~~~l~~~~~~~~~~~~A---~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 472 (899)
T TIGR02917 398 AARTQLGISKLSQGDPSEA---IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLG 472 (899)
T ss_pred HHHHHHHHHHHhCCChHHH---HHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 3444455555566666666 6666655444333 234555666 999999999999999998764 66788999999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhH
Q 005305 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLE 214 (703)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~ 214 (703)
..+...|++++|.+.+..+++.. +.+...+..+...|...|++++|.+.|+++.+ .+..+++.+...+.+.|+.++
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999998864 45566788899999999999999999998854 467789999999999999999
Q ss_pred HHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 005305 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294 (703)
Q Consensus 215 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 294 (703)
|...|.++...+. .+...+..+...+...|++++|..++..+.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 552 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999977643 356678888999999999999999999998764 67788999999999999999999999998754
Q ss_pred ---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHH
Q 005305 295 ---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371 (703)
Q Consensus 295 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 371 (703)
.+...|..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.. +.+..++.
T Consensus 630 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 707 (899)
T TIGR02917 630 LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFE 707 (899)
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHH
Confidence 356678999999999999999999999998763 4457788899999999999999999999998875 44677888
Q ss_pred HHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 005305 372 ALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449 (703)
Q Consensus 372 ~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 449 (703)
.+...|.+.|++++|.+.|+.+. .|+..++..+...+.+.|+.++|.+.++++.+.. ..+...+..+...|...|+.
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 89999999999999999999984 4556778889999999999999999999999863 34667888888999999999
Q ss_pred HHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 450 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
++|.++|+.+.+ ..+++...++.+..++...|+ .+|++.+++. ...| +...+..+...+...|++++|...++++
T Consensus 787 ~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 787 DKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999987 345678889999999999999 8899999874 3334 5567888889999999999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 864 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 864 VNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=221.58 Aligned_cols=105 Identities=58% Similarity=1.069 Sum_probs=96.5
Q ss_pred ceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHHcCcccCCCccCCCchH-HH--------HHHHhhhhHHHHH
Q 005305 571 ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QE--------QRVLSYHSEKLAV 641 (703)
Q Consensus 571 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~-~~--------~~~~~~~~e~la~ 641 (703)
||||+++ |.|++||.+||+. ++..+|...||.|++..+.|++++ ++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899976 8999999999987 566777889999999999998887 55 5688999999999
Q ss_pred HhcccCCCCCCcEEEEecc-cccCcchHHHHHHhhhcCceEEEecCCcccccc
Q 005305 642 AFGLINTSDWTPLQIVQSH-RICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693 (703)
Q Consensus 642 ~~~l~~~~~~~~~~~~k~l-~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~ 693 (703)
+|||+++ ||+||+ |||+|||+++|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-20 Score=225.04 Aligned_cols=492 Identities=14% Similarity=0.100 Sum_probs=278.9
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCCCCCcccH-----------------HHHHH-HHhcCChhHHHHHHHH
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGIC-----------------SQIEK-LVLNKRYREALELFEI 119 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~-----------------~~li~-~~~~g~~~~A~~l~~~ 119 (703)
++.+...+...+.+.|+.++| .+.+++.....|+...+ -.... +.+.|++++|+..|+.
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A---~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGA---QKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHH---HHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 455666677777888899988 88888877765655432 22233 7788999999999998
Q ss_pred HHHcCCCCCChhh-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCc--
Q 005305 120 LEFEGGFDVGSST-YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL-- 196 (703)
Q Consensus 120 m~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~-- 196 (703)
+.... +|+... ...........++.++|.+.++.+++.. +.+...+..+...+...|+.++|++.|+++.....
T Consensus 138 ~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 138 LFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 87654 444321 1111222234588899999999988874 45667778888888889999999998887743111
Q ss_pred ----ccH-----------------HHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 005305 197 ----VSC-----------------NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255 (703)
Q Consensus 197 ----~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 255 (703)
..| ...+..+-......+|...+.++......|+... .....++...|++++|...++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHH
Confidence 011 1001111111112233333333322222222111 122334455677777777777
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCc-----ccHHHH------------HHHHHHcCCcHHHHH
Q 005305 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT-----VGWNTI------------IAGYALHGYSEEALD 318 (703)
Q Consensus 256 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~-----~~~~~l------------i~~~~~~g~~~~A~~ 318 (703)
.+++.. +.+..++..|...|.+.|++++|+..|++..+.+. ..|..+ ...+.+.|++++|+.
T Consensus 294 ~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 294 QAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 776654 44566667777777777777777777766543211 112222 224556677777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh----------------------
Q 005305 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF---------------------- 376 (703)
Q Consensus 319 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~---------------------- 376 (703)
.|++..+.. +.+...+..+...+...|++++|.+.++.+++.... +...+..+...
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 777776652 223445555666666777777777777777664322 23333444444
Q ss_pred --------------------HHhcCCHHHHHHHhhhcCc--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH
Q 005305 377 --------------------YSKWGRIEDARHVFDKMLC--K-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433 (703)
Q Consensus 377 --------------------y~k~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 433 (703)
|...|++++|.+.|++... | +...+..+...|.+.|++++|+..|+++.+. .|+.
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~ 528 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPND 528 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCC
Confidence 3444555555555554421 1 2333444445555555555555555555442 2221
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCch---------HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH
Q 005305 434 -VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA---------MHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503 (703)
Q Consensus 434 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 503 (703)
..+..+...+...++.++|...++.+... ...++. ..+..+.+.+...|+.++|.++++.-| ++...
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~ 605 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRI 605 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchH
Confidence 22222222334445555555555443210 011110 011123444556666666666666432 34445
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+..+...+...|+.++|+..++++++.+|+++..+..++.+|...|++++|.+.++...+.
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 5666777777788888888888888778887777778888888888888888777766543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-19 Score=214.30 Aligned_cols=343 Identities=14% Similarity=0.045 Sum_probs=220.6
Q ss_pred HhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHH
Q 005305 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286 (703)
Q Consensus 207 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 286 (703)
.+.|++++|+..|++...... .+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .++.++|.
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHH
Confidence 344444444444444443311 122233334444444444444444444444432 222333333444332 23344444
Q ss_pred HHHhhcCCCC------------cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHhccCCHHHHHH
Q 005305 287 GVFDEMSEKT------------TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM-DHFTFSMIIRICTRLASLEHAKQ 353 (703)
Q Consensus 287 ~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~ 353 (703)
.+++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+...+...|++++|..
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444333210 111233444556678888888888887765 33 34455666777788888888888
Q ss_pred HHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCC----hh---------hHHHHHHHHHhcCCHHHHHHH
Q 005305 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN----VI---------SWNALIAGYGNHGRGEEAVEL 420 (703)
Q Consensus 354 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~----~~---------~~~~li~~~~~~g~~~~A~~l 420 (703)
.++.+++... .+......+...+.+.|+.++|...++.++... .. .+..+...+...|+.++|+.+
T Consensus 517 ~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 8888776532 244444555556677788888888887764321 11 122345667788889999888
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC
Q 005305 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP-FKT 499 (703)
Q Consensus 421 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 499 (703)
++. ..++...+..+...+.+.|+.++|...|+.+.+. -+.+...+..++..|...|++++|++.++... ..|
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 772 2334456677788899999999999999999872 34467888899999999999999999999754 344
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc------hHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 500 -TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS------NYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 500 -~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
+...+..+..++...|++++|...++++++..|+++. .+..++.++...|++++|.+.+++..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556777888888999999999999999987765443 55667899999999999999998875
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-19 Score=183.52 Aligned_cols=457 Identities=14% Similarity=0.094 Sum_probs=364.1
Q ss_pred cccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 005305 82 ESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160 (703)
Q Consensus 82 ~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g 160 (703)
.+-|+..++. +.. -..+.. ..+.|++.+|.+.-...-+++ +.+......+-..+.+..+++...+--...++..
T Consensus 38 ~qq~~~t~~~--~~~-~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~ 112 (966)
T KOG4626|consen 38 LQQFNKTHEG--SDD-RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN 112 (966)
T ss_pred HHHhccCCcc--chh-HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc
Confidence 5556665554 222 344455 789999999999766555554 3344444444455666666666555444444432
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHH
Q 005305 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237 (703)
Q Consensus 161 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 237 (703)
+.-..+|..+.+.+-..|++++|+..++.+.+ ..+..|-.+..++...|+.+.|...|.+..+- .|+.+...+-
T Consensus 113 -~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 113 -PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred -chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 33456888899999999999999999998876 45678999999999999999999999988764 5655543332
Q ss_pred -HHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---cccHHHHHHHHHHcCCc
Q 005305 238 -IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT---TVGWNTIIAGYALHGYS 313 (703)
Q Consensus 238 -l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~ 313 (703)
....-..|++.+|..-+..+++.. +.-..+|+.|...+-..|++..|+.-|++...-| ...|-.|...|...+.+
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 233344688999999988888764 3446789999999999999999999999987644 34788889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhh
Q 005305 314 EEALDLYYEMRDSGVKMDH-FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392 (703)
Q Consensus 314 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 392 (703)
++|+..|.+.... +|+. ..+..+...|-..|.++.|...+++.+..... -...|+.|..++-..|++.+|...+.+
T Consensus 269 d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 269 DRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 9999999887764 5654 56777777788999999999999999986422 467899999999999999999999998
Q ss_pred cCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc
Q 005305 393 MLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468 (703)
Q Consensus 393 m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 468 (703)
... .-..+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|..-+++..+ +.|+
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~ 420 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPT 420 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCch
Confidence 743 3456888899999999999999999999887 67775 7889999999999999999999998865 7787
Q ss_pred -hHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 469 -AMHYACMIELLGREGLLDEAFALIRG-APFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 469 -~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
...|+.|...|-..|+.++|.+.+.+ +.+.|. ....+.|.+.+...|++.+|+..++..+++.|+.+.+|..++..+
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 57899999999999999999999987 466675 347889999999999999999999999999999999999998887
Q ss_pred HhCCChHHHH
Q 005305 546 NSSGKLKEAA 555 (703)
Q Consensus 546 ~~~g~~~~A~ 555 (703)
--..+|.+-.
T Consensus 501 q~vcdw~D~d 510 (966)
T KOG4626|consen 501 QIVCDWTDYD 510 (966)
T ss_pred HHHhcccchH
Confidence 7777776633
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-17 Score=187.16 Aligned_cols=470 Identities=12% Similarity=0.006 Sum_probs=320.0
Q ss_pred CCCCcccchhhcccccCccCCCCCcc-cHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHH
Q 005305 71 KPNKIYTEELKESSLPDTQMKKPSAG-ICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIRE 148 (703)
Q Consensus 71 k~~~~~~aa~~~~~f~~~~~~~p~~~-~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 148 (703)
..|++.+| ...|.......|+.. .+..+.. |.+.|++++|+..+++..+.. |+...|..++... ++.++
T Consensus 56 ~~Gd~~~A---~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La~i---~~~~k 126 (987)
T PRK09782 56 KNNDEATA---IREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLAAI---PVEVK 126 (987)
T ss_pred hCCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHHHh---ccChh
Confidence 33899988 999998887777654 4555666 999999999999999998864 5555555545333 88889
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHH--------HHhCCChHHHHHHHccCCCCC--ccc-HHHHHHHHHhCCChhHHHH
Q 005305 149 VKRVFSYMLSTGFEPDLYMRNRVLLM--------HVRCGMMIDARRLFDEMPERN--LVS-CNMIIAGMIDSGDYLEAFL 217 (703)
Q Consensus 149 a~~l~~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~m~~~d--~~~-~~~li~~~~~~g~~~~A~~ 217 (703)
|.++++.+.+.. +.+..++..+... |.+.+...++++ .....|+ ... .-.+...|.+.|++++|++
T Consensus 127 A~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 127 SVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999999875 4455666666665 877777777776 3333343 333 3344889999999999999
Q ss_pred HHHHhHHcCCCCChhhHHHHHHHHhc-CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-
Q 005305 218 LFLDLWEEFSDCGSRTFATMIRASAG-LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK- 295 (703)
Q Consensus 218 ~~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~- 295 (703)
++.++.+.+... ..-...+..++.. .++ +.+..++.. .+..++.++..+++.|.+.|+.++|.+++.+++.-
T Consensus 204 lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 999999886443 3335555556666 355 666666442 33468889999999999999999999998887531
Q ss_pred ----CcccH-------------------------------------------HH--------------------------
Q 005305 296 ----TTVGW-------------------------------------------NT-------------------------- 302 (703)
Q Consensus 296 ----~~~~~-------------------------------------------~~-------------------------- 302 (703)
+..+| ..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 00000 00
Q ss_pred ----------H--------------HHHHHHcCCcHHHHHHHHHHHHC-C-CCCCHhhHHHHHHHHhcc-----------
Q 005305 303 ----------I--------------IAGYALHGYSEEALDLYYEMRDS-G-VKMDHFTFSMIIRICTRL----------- 345 (703)
Q Consensus 303 ----------l--------------i~~~~~~g~~~~A~~l~~~m~~~-g-~~pd~~t~~~ll~a~~~~----------- 345 (703)
+ -.-.++.|+.++|..+|+..... + -.++......++..+.+.
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 0 00123345566666666554331 0 111111111222222222
Q ss_pred ----------------------------------------------------CCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 005305 346 ----------------------------------------------------ASLEHAKQAHAGLVRHGFGLDIVANSAL 373 (703)
Q Consensus 346 ----------------------------------------------------~~~~~a~~~~~~~~~~g~~~~~~~~~~L 373 (703)
+..++|...+....... |+......+
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~l 515 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAV 515 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHH
Confidence 33444555444444432 333333333
Q ss_pred HhhHHhcCCHHHHHHHhhhcCc--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHH
Q 005305 374 VDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSE 450 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 450 (703)
...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+. .|+. ..+..+.......|+++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHH
Confidence 4444577888888888876632 34445666677778888888888888888774 3444 33333344555668889
Q ss_pred HHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTT-KNMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 451 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
+|...++...+ +.|+...|..+..++.+.|+.++|++.+++. ...|+ ...+..+..++...|+.++|+..+++++
T Consensus 594 eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99888888875 4567888888888999999999999998874 44554 5577777778889999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 529 ~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998887544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-18 Score=175.37 Aligned_cols=422 Identities=14% Similarity=0.135 Sum_probs=336.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhC
Q 005305 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDS 209 (703)
Q Consensus 133 ~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~ 209 (703)
...|..-..+.|++++|++--..+-... +.+....-.+-..+....+.+....--..... .-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3444555567788988887544433322 22222222233455566666554332221111 2346788899999999
Q ss_pred CChhHHHHHHHHhHHcCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHH-HHHHHHHHHHhCCCHHHHHH
Q 005305 210 GDYLEAFLLFLDLWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF-VSCALIDMYSKCGSIEDAQG 287 (703)
Q Consensus 210 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~ 287 (703)
|+.++|+.+|+.|.+. +| ....|..+..++...|+.+.|.+.+.+.++.. |+.. +.+.+.......|++++|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999875 44 45689999999999999999999999998764 5543 44455666666899999999
Q ss_pred HHhhcCC--C-CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005305 288 VFDEMSE--K-TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH-FTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363 (703)
Q Consensus 288 ~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 363 (703)
.+.+..+ | -.+.|+.|...+-.+|+...|+.-|++.... .|+- ..|..+-..+...+.++.|...+..+.....
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 9887654 3 3568999999999999999999999998764 5553 4677888888888899999988888877532
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHH
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KN-VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAV 439 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 439 (703)
....++..|.-.|-..|.+|.|...+++..+ |+ ...|+.|..++...|+..+|.+.+.+.+. ..|+. ...+.|
T Consensus 284 -n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NL 360 (966)
T KOG4626|consen 284 -NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNL 360 (966)
T ss_pred -cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHH
Confidence 2466778888899999999999999999854 43 56899999999999999999999999987 57776 788999
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCH-HHHHHHHHHHHHcCC
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIRG-APFKTTK-NMWAALLTACRVNGN 516 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~-~~~~~ll~a~~~~g~ 516 (703)
..++...|.+++|..+|....+ +.|. ....+.|...|-..|++++|..-+++ +.++|+. ..++.+...+...|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 9999999999999999998866 4454 56788999999999999999999987 5778875 489999999999999
Q ss_pred hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 005305 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567 (703)
Q Consensus 517 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 567 (703)
++.|.+.+.+++..+|.-..++..|+.+|..+|+..+|..-+++..+-...
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999998765443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-17 Score=185.63 Aligned_cols=445 Identities=11% Similarity=-0.001 Sum_probs=306.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 183 (703)
+...|++++|+..|+...+.. |-+..++..+..++...|+.++|+...+..++.. +.|...+..| ..+ ++.++
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~k 126 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVK 126 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChh
Confidence 455699999999999999875 5567888999999999999999999999999864 3334444444 222 89999
Q ss_pred HHHHHccCCC--CC-cccHHHHHHH--------HHhCCChhHHHHHHHHhHHcCCCCChhhHHHH-HHHHhcCCChHHHH
Q 005305 184 ARRLFDEMPE--RN-LVSCNMIIAG--------MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM-IRASAGLELISVGK 251 (703)
Q Consensus 184 A~~~f~~m~~--~d-~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~~~~~~a~ 251 (703)
|..+++++.. |+ ...+..+... |.+.+...+++ + .......|+..+.... .+.+...++++++.
T Consensus 127 A~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 127 SVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999865 33 3344444443 66664444444 4 4344445556655555 89999999999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHh-CCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCC-
Q 005305 252 QLHSCALKMGFGDNVFVSCALIDMYSK-CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK- 329 (703)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~- 329 (703)
.++..+.+.+ +.+......|..+|.. .++ +.+..++....+.|+..+..+...|.+.|+.++|.++++++...-..
T Consensus 203 ~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 203 TLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 9999999997 4556667778888888 477 99999988765678889999999999999999999999887443111
Q ss_pred CCHhhHHHHH------------------------------H---------------------------------------
Q 005305 330 MDHFTFSMII------------------------------R--------------------------------------- 340 (703)
Q Consensus 330 pd~~t~~~ll------------------------------~--------------------------------------- 340 (703)
|+..++.-.+ .
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 1111111000 0
Q ss_pred ------------------------HHhccCCHHHHHHHHHHHHHc-C-CCCchHHHHHHHhhHHhcCC------------
Q 005305 341 ------------------------ICTRLASLEHAKQAHAGLVRH-G-FGLDIVANSALVDFYSKWGR------------ 382 (703)
Q Consensus 341 ------------------------a~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~Li~~y~k~g~------------ 382 (703)
.....|+.++|.+++...... + -..+....+-|+..|.+.+.
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 011234444555555544431 0 11123344455555555544
Q ss_pred ---------------------------------------------------HHHHHHHhhhcCcCChhhHHHHHHHH--H
Q 005305 383 ---------------------------------------------------IEDARHVFDKMLCKNVISWNALIAGY--G 409 (703)
Q Consensus 383 ---------------------------------------------------~~~A~~~f~~m~~~~~~~~~~li~~~--~ 409 (703)
.++|...|.+.....+..|+.+..++ .
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAY 520 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 22333333332211112233333333 4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 005305 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (703)
..|++++|+..|+++... .|+...+..+..++.+.|+.++|..+++...+. . ++....+..+...+.+.|++++|.
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 677788888888776543 444445556666777788888888888877662 1 223333333334444569999999
Q ss_pred HHHHh-CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 490 ALIRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 490 ~~~~~-m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
..+++ +...|+...|..+...+.+.|+.++|+..++++++++|+++..+..++.++...|++++|.+.+++..+..
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99887 45578888999999999999999999999999999999999999999999999999999999999887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-17 Score=181.58 Aligned_cols=416 Identities=12% Similarity=0.024 Sum_probs=264.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCC
Q 005305 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGD 211 (703)
Q Consensus 135 ~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~ 211 (703)
.....+...|+++.|...+...++. .|+...|..+..+|.+.|++++|+..++...+ .+...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3344455566666666666666543 34555566666666666666666666655443 233456666666666666
Q ss_pred hhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 005305 212 YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291 (703)
Q Consensus 212 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 291 (703)
+++|+.-|......+...+. ....++..... ..+........+.. +.+...+..+.. |........+..-++.
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 66666666544332111111 11111111100 11111122222221 122222222222 2111111111111221
Q ss_pred cCCCCc---ccHHHHHHHH---HHcCCcHHHHHHHHHHHHCC-CCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005305 292 MSEKTT---VGWNTIIAGY---ALHGYSEEALDLYYEMRDSG-VKMD-HFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363 (703)
Q Consensus 292 m~~~~~---~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g-~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 363 (703)
..+-+. ..+..+...+ ...+++++|++.|++..+.+ ..|+ ...+..+...+...|+++.|...++.+++...
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 111111 1111111111 23467889999999888764 2333 34566666677788999999999999887642
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHH
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAV 439 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 439 (703)
.+...+..+...|...|++++|...|+.... .+...|..+...|...|++++|+..|++.++. .|+ ...+..+
T Consensus 363 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~l 439 (615)
T TIGR00990 363 -RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQL 439 (615)
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHH
Confidence 2456778888889999999999999988743 45678888999999999999999999999874 555 4667777
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCH-------H-HHHHHHHH
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTK-------N-MWAALLTA 510 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~-------~-~~~~ll~a 510 (703)
..++.+.|++++|...|+...+ ..+.+...|+.+..++...|++++|.+.|++ +...|+. . .++..+..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 7888999999999999999877 3445578889999999999999999999987 3333321 1 12222233
Q ss_pred HHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 511 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+...|++++|...++++++++|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345699999999999999999999889999999999999999999999988653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=183.54 Aligned_cols=305 Identities=12% Similarity=0.082 Sum_probs=193.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---cchHHHHHHHHHhCCC
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD---LYMRNRVLLMHVRCGM 180 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~---~~~~~~Li~~y~~~g~ 180 (703)
+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 666677777777777777654 34455667777777777777777777777765431111 1345556666666666
Q ss_pred hHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 005305 181 MIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257 (703)
Q Consensus 181 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 257 (703)
+++|+++|+++.+ .+..+++.++..+.+.|++++|++.|+.+.+.+..++..
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------------- 177 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV------------------------- 177 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-------------------------
Confidence 6666666666654 344556666666666666666666666665433221110
Q ss_pred HHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhh
Q 005305 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334 (703)
Q Consensus 258 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 334 (703)
.....+..+...|.+.|++++|.+.|+++.+. +...+..+...|.+.|++++|.++|+++.+.+......+
T Consensus 178 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 178 ------EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred ------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 00123345666667777777777777766432 344566677777788888888888887776532222345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHh--
Q 005305 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGN-- 410 (703)
Q Consensus 335 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~-- 410 (703)
+..+..++...|++++|...++.+.+.. |+..++..++..|.+.|++++|..+|+++. .|+..+++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 6666777777777777777777776653 344455777777788888888888877663 3666777777766654
Q ss_pred -cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 005305 411 -HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449 (703)
Q Consensus 411 -~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 449 (703)
.|+.++++.+|++|.+.+++|++. .+|.+.|..
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 457778888888888777666655 336665543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=178.79 Aligned_cols=220 Identities=15% Similarity=0.165 Sum_probs=105.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCH----hhHHHHHHH
Q 005305 269 SCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH----FTFSMIIRI 341 (703)
Q Consensus 269 ~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a 341 (703)
+..+...|.+.|++++|.++|+++.+ .+..+++.++..+.+.|++++|++.|+++.+.+..++. ..+..+...
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34444445555555555555554433 22334444555555555555555555555443322111 112233334
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CC--hhhHHHHHHHHHhcCCHHHH
Q 005305 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KN--VISWNALIAGYGNHGRGEEA 417 (703)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~--~~~~~~li~~~~~~g~~~~A 417 (703)
+...++++.|...+..+.+.. +.+...+..+...|.+.|++++|.+.|+++.. |+ ...++.++.+|...|+.++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 444555555555555554432 11233444455555555555555555555532 21 22345555555555555555
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh---cCChHHHHHHHHh
Q 005305 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR---EGLLDEAFALIRG 494 (703)
Q Consensus 418 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~ 494 (703)
...++++.+. .|+...+..+...+.+.|++++|..+++.+.+ ..|+...+..+++.+.. .|+.++|..++++
T Consensus 269 ~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~---~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 269 LEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR---RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 5555555543 34444445555555555555555555555544 13555555555544442 3355555555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-15 Score=174.19 Aligned_cols=401 Identities=11% Similarity=0.003 Sum_probs=196.4
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHH
Q 005305 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMI 207 (703)
Q Consensus 131 ~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~ 207 (703)
....-.+....-.|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++..+ .+...+..+...+.
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 333344444455555555555555554321 22333455555555555666666655555322 23344555555566
Q ss_pred hCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 005305 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287 (703)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 287 (703)
..|++++|+..+++..+... .+.. +..+..++...|+.++|...+..+++.. +.+..++..+..++.+.|..+.|.+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 66666666666666654411 1222 5555555556666666666666666654 4455555666777777777777777
Q ss_pred HHhhcCCCCcc--------cHHHHHHHHH-----HcCCc---HHHHHHHHHHHHC-CCCCCHh-hHH----HHHHHHhcc
Q 005305 288 VFDEMSEKTTV--------GWNTIIAGYA-----LHGYS---EEALDLYYEMRDS-GVKMDHF-TFS----MIIRICTRL 345 (703)
Q Consensus 288 ~f~~m~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~pd~~-t~~----~ll~a~~~~ 345 (703)
.++.... ++. ....++..+. ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 7776654 211 1111111111 11223 5677777777643 1222221 111 112334455
Q ss_pred CCHHHHHHHHHHHHHcCCC-CchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCC-------hhhHHHHHHHHHhcCCHHHH
Q 005305 346 ASLEHAKQAHAGLVRHGFG-LDIVANSALVDFYSKWGRIEDARHVFDKMLCKN-------VISWNALIAGYGNHGRGEEA 417 (703)
Q Consensus 346 ~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A 417 (703)
++.++|...++.+.+.+.+ |+ .....+...|...|++++|+..|+++...+ ...+..+..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 6677777777776665422 21 122224556666777777777766653221 12344445566666777777
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc---hHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR---AMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 418 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
+.+++++.+. .|..... +. . ..-.|+ ...+..+..++...|++++|++.+++
T Consensus 330 ~~~l~~~~~~--~P~~~~~-------------------~~-~---~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 330 LTVTAHTINN--SPPFLRL-------------------YG-S---PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred HHHHHHHhhc--CCceEee-------------------cC-C---CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777766653 2211000 00 0 000122 11223344444444555555554444
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 495 A-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 495 m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
+ ...| +...+..+...+...|+.++|+..++++++++|+++..+..++..+.+.|+|++|..+++.+.
T Consensus 385 al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 385 LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 1112 233444444444455555555555555555555555555555555555555555555554444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-16 Score=173.77 Aligned_cols=351 Identities=12% Similarity=0.010 Sum_probs=263.3
Q ss_pred hCCChHHHHHHHccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHH
Q 005305 177 RCGMMIDARRLFDEMPE------RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250 (703)
Q Consensus 177 ~~g~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 250 (703)
+..+++.-.-.|..-++ .+....-.++..+.+.|++++|+.+++........+ ...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 44555555555655554 122233446677788899999999988887764443 33444445566678999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCC
Q 005305 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327 (703)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 327 (703)
...++.+++.. +.+...+..+...|.+.|++++|...|++... .+...|..+...+.+.|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999988875 56677888888999999999999999988764 345678888888999999999999998887653
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHH
Q 005305 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNAL 404 (703)
Q Consensus 328 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~l 404 (703)
..+ ...+.. +..+...|++++|...+..+++....++......+...+.+.|+.++|...|++... .+...+..+
T Consensus 175 P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 222 222222 334677899999999998887765444445555667788899999999999988743 356678888
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHH
Q 005305 405 IAGYGNHGRGEE----AVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479 (703)
Q Consensus 405 i~~~~~~g~~~~----A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 479 (703)
...|...|++++ |+..|++..+. .|+. ..+..+...+...|++++|...++...+. -+.+...+..+...|
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 889999999885 89999998874 5654 67888888999999999999999998762 233456677788899
Q ss_pred HhcCChHHHHHHHHhCC-CCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 480 GREGLLDEAFALIRGAP-FKTTKNMW-AALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~m~-~~p~~~~~-~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
.+.|++++|.+.++++. ..|+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999998753 45665443 3456678899999999999999999998853
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-15 Score=172.72 Aligned_cols=371 Identities=11% Similarity=0.038 Sum_probs=237.1
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCC-ChhhHHHHH
Q 005305 163 PDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC-GSRTFATMI 238 (703)
Q Consensus 163 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 238 (703)
.+.....-.+......|+.++|++++.+... .+...+..+...+...|++++|+.+|++.... .| +......+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3444445566667777888888888877653 23334777778888888888888888887654 33 344555666
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcCCcHH
Q 005305 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHGYSEE 315 (703)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~ 315 (703)
..+...|++++|...++.+++.. +.+.. +..+..+|...|+.++|...++++.+. +...+..+...+...|..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 67777888888888888877763 45555 777777788888888888888777542 34455566667777777787
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCH---HHHHHHhhh
Q 005305 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI---EDARHVFDK 392 (703)
Q Consensus 316 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~---~~A~~~f~~ 392 (703)
|+..+++... .|+.... +.. ..+ ... +...+.......+++ ++|.+.++.
T Consensus 169 Al~~l~~~~~---~p~~~~~---l~~-------~~~----~~~----------~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRD---LEA-------DAA----AEL----------VRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHHhCCC---CHHHHHH---HHH-------HHH----HHH----------HHhhcccccChhHHHHHHHHHHHHHHH
Confidence 8777765442 3331000 000 000 000 000011111112222 555555555
Q ss_pred cCc---CChhh---H----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 393 MLC---KNVIS---W----NALIAGYGNHGRGEEAVELFEQMLLNGMR-PNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 393 m~~---~~~~~---~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
+.. .++.. + ...+..+...|++++|+..|+++.+.+.. |+..- ..+..++...|++++|...|+.+.+
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 531 11111 1 11123445667788888888887775432 43321 2245577778888888888887765
Q ss_pred hcCCCC--chHHHHHHHHHHHhcCChHHHHHHHHhCCC--------------CCCH---HHHHHHHHHHHHcCChhHHHH
Q 005305 462 DHKIKP--RAMHYACMIELLGREGLLDEAFALIRGAPF--------------KTTK---NMWAALLTACRVNGNLELGKF 522 (703)
Q Consensus 462 ~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------~p~~---~~~~~ll~a~~~~g~~~~a~~ 522 (703)
.....+ .......+..++...|++++|.+.++++.. .|+. ..+..+...+...|+.++|+.
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 211111 134455666677788888888888776532 1232 244566778889999999999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 523 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
.++++....|+++..+..++.++...|+.++|.+.+++..+..
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999988754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-15 Score=166.24 Aligned_cols=434 Identities=11% Similarity=-0.043 Sum_probs=296.2
Q ss_pred HHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHh
Q 005305 99 SQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR 177 (703)
Q Consensus 99 ~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~ 177 (703)
...-. +.+.|++++|+..|++.... .|+...|..+..++...|++++|.+.+...++.. +.+...+..+...|..
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34445 88999999999999999874 5788889999999999999999999999999864 4456688889999999
Q ss_pred CCChHHHHHHHccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 005305 178 CGMMIDARRLFDEMPER---NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254 (703)
Q Consensus 178 ~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 254 (703)
.|++++|+.-|...... +......++.-+.. ..+........+.. .++...+..+.. +...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 99999999877654321 11111112211111 12222233222221 111112221111 11111111111111
Q ss_pred HHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHhhcCCC------CcccHHHHHHHHHHcCCcHHHHHHHHH
Q 005305 255 SCALKMGFGDNVFVSCALIDMY------SKCGSIEDAQGVFDEMSEK------TTVGWNTIIAGYALHGYSEEALDLYYE 322 (703)
Q Consensus 255 ~~~~~~g~~~~~~~~~~Li~~y------~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~ 322 (703)
....+ .+......++..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++
T Consensus 281 ~~~~~----~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 281 EDSNE----LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hcccc----cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11110 1111111111111 2347889999999887642 344688888888899999999999999
Q ss_pred HHHCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CCh
Q 005305 323 MRDSGVKMD-HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNV 398 (703)
Q Consensus 323 m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~ 398 (703)
..+. .|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++... .+.
T Consensus 357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 8875 444 4577778888889999999999999998864 33678888999999999999999999998843 356
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc--h------
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR--A------ 469 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~------ 469 (703)
..|..+...+.+.|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+...+. .|+ .
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~ 508 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVL 508 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHH
Confidence 67888888999999999999999998874 454 577888888999999999999999998762 222 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 005305 470 MHYACMIELLGREGLLDEAFALIRG-APFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 547 (703)
..++.....+...|++++|.+++++ +...|+ ...+..+...+...|++++|...++++.++.+..... ..
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~ 580 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQ 580 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HH
Confidence 1223333344557999999999987 445554 4578889999999999999999999999887763321 23
Q ss_pred CCChHHHHHHHHHHH
Q 005305 548 SGKLKEAAEVIRTLR 562 (703)
Q Consensus 548 ~g~~~~A~~~~~~m~ 562 (703)
+..+.+|.++....+
T Consensus 581 a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 581 AISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555544443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-14 Score=160.32 Aligned_cols=429 Identities=10% Similarity=-0.002 Sum_probs=300.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 005305 98 CSQIEKLVLNKRYREALELFEILEFEGGFDVGS--STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH 175 (703)
Q Consensus 98 ~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y 175 (703)
|...|-..++|++..|++.|++..+.. |+. ..+ .++..+...|+.++|...++..+.. -+........+...|
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly 112 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHH
Confidence 555555778888888888888887754 443 233 7777777888888888888887711 111222233335577
Q ss_pred HhCCChHHHHHHHccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHH
Q 005305 176 VRCGMMIDARRLFDEMPER---NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252 (703)
Q Consensus 176 ~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 252 (703)
...|++++|+++|+++.+. |...+..++..|.+.++.++|++.+.++... .|+...+..++..+...++..+|.+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 7888888888888888652 3455667777888888888888888888665 4455555444444444556656888
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-CcccHHH----HHHHHH---------HcCC---cHH
Q 005305 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNT----IIAGYA---------LHGY---SEE 315 (703)
Q Consensus 253 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~----li~~~~---------~~g~---~~~ 315 (703)
.++.+++.. +.+...+..++....+.|-...|.++..+-+.- +...+.- .+.-.+ ..++ .+.
T Consensus 191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 888888875 667778888888888888888888887765531 0111000 000111 1122 234
Q ss_pred HHHHHHHHHHC-CCCCCH-h----hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHH
Q 005305 316 ALDLYYEMRDS-GVKMDH-F----TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389 (703)
Q Consensus 316 A~~l~~~m~~~-g~~pd~-~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 389 (703)
|+.-++.+... +-.|.. . ...-.+-++...++..++...++.+...+.+....+-.++.++|...+++++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 55555555441 222322 1 22345567788899999999999999888766677889999999999999999999
Q ss_pred hhhcCcC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------CcCHHH-HHHHHHHHHcc
Q 005305 390 FDKMLCK---------NVISWNALIAGYGNHGRGEEAVELFEQMLLNGM-------------RPNHVT-FLAVLSACSRS 446 (703)
Q Consensus 390 f~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------~p~~~t-~~~ll~a~~~~ 446 (703)
|..+... +......|.-+|...+++++|..+++++.+.-. .||-.. +..+...+.-.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 9987332 233346788899999999999999999987311 223333 33445667888
Q ss_pred CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChhHHHHHH
Q 005305 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP-FKTT-KNMWAALLTACRVNGNLELGKFAA 524 (703)
Q Consensus 447 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~ 524 (703)
|++.+|.+.++.+.. .-+-|......+.+.+...|++.+|++.++... ..|+ ..+......+....+++++|..+.
T Consensus 430 gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 430 NDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999976 456678888899999999999999999997642 3554 446667777778889999999999
Q ss_pred HHHhCCCCCCcc
Q 005305 525 EKLYGMEPEKLS 536 (703)
Q Consensus 525 ~~~~~~~p~~~~ 536 (703)
+.+.+..|+++.
T Consensus 508 ~~l~~~~Pe~~~ 519 (822)
T PRK14574 508 DDVISRSPEDIP 519 (822)
T ss_pred HHHHhhCCCchh
Confidence 999999999864
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-15 Score=166.14 Aligned_cols=321 Identities=12% Similarity=0.010 Sum_probs=234.6
Q ss_pred HHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhC
Q 005305 100 QIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC 178 (703)
Q Consensus 100 ~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~ 178 (703)
.++. +.+.|++++|+.+++...... +-+...+..+..++...|++++|.+.++.+++.. +.+...+..+...|...
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3445 888999999999999888764 3344555666667777899999999999998864 45566778888888999
Q ss_pred CChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 005305 179 GMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255 (703)
Q Consensus 179 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 255 (703)
|++++|...|++... .+...|..+...+...|++++|...++.+......+.. .+.. +..+...|++++|...+.
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHHHHHHHHH
Confidence 999999999887755 34667888888899999999999999887665333222 2222 234677788888888888
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHH----HHHHHHHHHHCCC
Q 005305 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEE----ALDLYYEMRDSGV 328 (703)
Q Consensus 256 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~ 328 (703)
.+++....++......+...+.+.|++++|...|++... .+...+..+...|.+.|++++ |+..|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 877664334444555566778888888888888887654 245567778888888888875 788888887652
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--cCChhh-HHHHH
Q 005305 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--CKNVIS-WNALI 405 (703)
Q Consensus 329 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~-~~~li 405 (703)
+.+...+..+...+...|++++|...++.+++.... +..+...+...|.+.|++++|...|+.+. .|+... +..+.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 234556777777788888888888888888876432 45566777888888888888888888774 333323 33345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 005305 406 AGYGNHGRGEEAVELFEQMLLN 427 (703)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~ 427 (703)
..+...|+.++|+..|++..+.
T Consensus 360 ~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 6677888888888888887764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-13 Score=154.77 Aligned_cols=425 Identities=12% Similarity=0.048 Sum_probs=310.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHH---HHHHH
Q 005305 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDL--YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI---IAGMI 207 (703)
Q Consensus 133 ~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~l---i~~~~ 207 (703)
|...+. ..+.|+++.|...+.++++.. |+. .++ .++..+...|+.++|+..+++...|+...+..+ ...|.
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 444443 458899999999999999864 443 344 888999999999999999999988755555443 44677
Q ss_pred hCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 005305 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287 (703)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 287 (703)
..|++++|+++|+++.+.... |...+..++..+...++.++|.+.+..+.+.. |+...+-.++..+...++..+|.+
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHH
Confidence 889999999999999886433 35666677888899999999999999988764 555555556666655677767999
Q ss_pred HHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhh------HHHHHHHH-----hccCC---HHH
Q 005305 288 VFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT------FSMIIRIC-----TRLAS---LEH 350 (703)
Q Consensus 288 ~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t------~~~ll~a~-----~~~~~---~~~ 350 (703)
.++++.+. +...+..+..+..+.|-...|+++..+-... +.|...- ....+..- ....+ .+.
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99998753 4556778888899999999998776653211 1111100 11111100 01112 344
Q ss_pred HHHHHHHHHHc-CCCC-c-hHHHHHH---HhhHHhcCCHHHHHHHhhhcCcCC--h--hhHHHHHHHHHhcCCHHHHHHH
Q 005305 351 AKQAHAGLVRH-GFGL-D-IVANSAL---VDFYSKWGRIEDARHVFDKMLCKN--V--ISWNALIAGYGNHGRGEEAVEL 420 (703)
Q Consensus 351 a~~~~~~~~~~-g~~~-~-~~~~~~L---i~~y~k~g~~~~A~~~f~~m~~~~--~--~~~~~li~~~~~~g~~~~A~~l 420 (703)
+..-++.+... +-.| . .....+. +-++.+.|+..++.+.|+.+.... + ..--++..+|...+++++|+.+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 45555555441 2112 2 1223333 445678899999999999997432 2 2456678999999999999999
Q ss_pred HHHHHHcCC-----CcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcC----------CCCc---hHHHHHHHHHHHhc
Q 005305 421 FEQMLLNGM-----RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK----------IKPR---AMHYACMIELLGRE 482 (703)
Q Consensus 421 ~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~ 482 (703)
|+++..... .++......|..++..++++++|..+++.+.+... -.|+ ...+..++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 999976431 22334457888999999999999999999987211 0122 23445577888999
Q ss_pred CChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 483 GLLDEAFALIRGAP-F-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 483 g~~~~A~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
|++.+|++.++++. . +-|...+..+...+...|.+.+|+..++.+..++|++..+...++..+...|+|++|.++.+.
T Consensus 430 gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999862 2 347778899999999999999999999999999999999999999999999999999999988
Q ss_pred HHhCC
Q 005305 561 LRRKG 565 (703)
Q Consensus 561 m~~~~ 565 (703)
..+..
T Consensus 510 l~~~~ 514 (822)
T PRK14574 510 VISRS 514 (822)
T ss_pred HHhhC
Confidence 76543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-13 Score=144.65 Aligned_cols=479 Identities=13% Similarity=0.079 Sum_probs=331.0
Q ss_pred cccchhhcccccCccCCCCCcccHHHHHH--HHhcCChhHHHHHHHHHHHcCC-CCCChhhHHHHHHHHhccCChHHHHH
Q 005305 75 IYTEELKESSLPDTQMKKPSAGICSQIEK--LVLNKRYREALELFEILEFEGG-FDVGSSTYDALISACIGLRSIREVKR 151 (703)
Q Consensus 75 ~~~aa~~~~~f~~~~~~~p~~~~~~~li~--~~~~g~~~~A~~l~~~m~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~ 151 (703)
++.| .+.|.......|+.+..-.--+ ....+++..|+.+|........ .+||..+ .+-..+.+.++.+.|+.
T Consensus 146 ~~~A---~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDA---DAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHH---HHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHH
Confidence 3555 6667666655555443322222 4566889999999998765321 3455432 22344567888889999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhCC---ChHHHHHHHccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHc
Q 005305 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCG---MMIDARRLFDEMP---ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225 (703)
Q Consensus 152 l~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 225 (703)
.|....+.. +.++.++..|--+-.... .+..+..++...- ..|++..+.|.+-|.-.|+++.+..+...+...
T Consensus 221 a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 998888653 122222222222212222 3344444444332 267888999999999999999999999888764
Q ss_pred CCC--CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CcccH
Q 005305 226 FSD--CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK---TTVGW 300 (703)
Q Consensus 226 g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~ 300 (703)
... .-...|-.+.+++-..|++++|.+++-+..+..-...+..+-.|..+|.+.|+++.|...|+.+... +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 311 1234577888999999999999999988887652222445567899999999999999999988643 44556
Q ss_pred HHHHHHHHHcC----CcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH----HcCCCCchHHHHH
Q 005305 301 NTIIAGYALHG----YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV----RHGFGLDIVANSA 372 (703)
Q Consensus 301 ~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~ 372 (703)
..+...|+..+ ..++|..++.+..+.- +.|...|..+...+-. +++......+..+. ..+-.+.+.+.|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 66666676664 4567777777666542 3455566666555543 44444466655544 3455577899999
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCc-------CChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHH-HH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLC-------KNVI-------SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT-FL 437 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~-------~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 437 (703)
+...+...|++++|...|..... +|.. -|| +...+-..++++.|.++|...... .|+.++ |.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 99999999999999999987632 2221 233 445566677899999999999885 677643 44
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh----CCCCCCHHHHHHHHHHHHH
Q 005305 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG----APFKTTKNMWAALLTACRV 513 (703)
Q Consensus 438 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~p~~~~~~~ll~a~~~ 513 (703)
.++..-...+...+|...+..... ....++..++.+.+.+.+...+..|.+-|+. ....+|..+.-+|.+.|.+
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 444333345678899999988876 4556666777778788888888888774443 3335788888788776642
Q ss_pred ------------cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 514 ------------NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 514 ------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
.+..+.|.+.+.+++..+|.|..+-+-++-+++..|+|.+|..+|.+.++...
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 24567899999999999999988888899999999999999999999998765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-13 Score=148.44 Aligned_cols=482 Identities=15% Similarity=0.077 Sum_probs=303.1
Q ss_pred cccCCCCcccchhhcccccCccCC----CCCcccHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh
Q 005305 68 PRPKPNKIYTEELKESSLPDTQMK----KPSAGICSQIEK--LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACI 141 (703)
Q Consensus 68 ~y~k~~~~~~aa~~~~~f~~~~~~----~p~~~~~~~li~--~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~ 141 (703)
.|.| +++..| ..+|...... +||+. ..|+ +.+.|+.+.|+..|.+..+.+ |.+..++..|--.-.
T Consensus 174 ~ynk-kdY~~a---l~yyk~al~inp~~~aD~r---Igig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 174 AYNK-KDYRGA---LKYYKKALRINPACKADVR---IGIGHCFWKLGMSEKALLAFERALQLD--PTCVSALVALGEVDL 244 (1018)
T ss_pred Hhcc-ccHHHH---HHHHHHHHhcCcccCCCcc---chhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHH
Confidence 3566 788888 7777764332 33432 2233 677888888888888888765 223333332222211
Q ss_pred ---ccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCC------cccHHHHHHHHHhCCCh
Q 005305 142 ---GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN------LVSCNMIIAGMIDSGDY 212 (703)
Q Consensus 142 ---~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~ 212 (703)
....+..|.+++...-+.. ..++.+.+.|.+.|.-.|++..+..+...+...+ ..+|--+.++|-..|++
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 2233556666666665544 5567788888888888888888887776665422 23456677888888888
Q ss_pred hHHHHHHHHhHHcCCCCChh--hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC----CHHHHH
Q 005305 213 LEAFLLFLDLWEEFSDCGSR--TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG----SIEDAQ 286 (703)
Q Consensus 213 ~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g----~~~~A~ 286 (703)
++|...|.+..+. .||.+ .+..+...+...|+++.+...|..+.+.. +.+..+.-.|...|+..+ ..+.|.
T Consensus 324 ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 324 EKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred HHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 8888888776543 44443 34456677778888888888888877764 555566666666666654 345555
Q ss_pred HHHhhcCCC---Cccc--------------------------------------HHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 287 GVFDEMSEK---TTVG--------------------------------------WNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 287 ~~f~~m~~~---~~~~--------------------------------------~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
.+.....++ |... .|.+..-+...|++.+|...|.+...
T Consensus 401 ~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 401 NVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 555444332 2222 33444444555566666666655543
Q ss_pred C---CCCCCH-----hhHHH-HHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--
Q 005305 326 S---GVKMDH-----FTFSM-IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-- 394 (703)
Q Consensus 326 ~---g~~pd~-----~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-- 394 (703)
. -..+|. .|..- +....-..++.+.|.+.|..+++..+. -+..|-.|.-+-...+...+|...+....
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 2 112222 11111 122223344566666666666654211 11122222222222345566666666653
Q ss_pred -cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHcc------------CCHHHHHHHHHHhH
Q 005305 395 -CKNVISWNALIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACSRS------------GLSERGWEIFQSMS 460 (703)
Q Consensus 395 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~------------g~~~~a~~~~~~m~ 460 (703)
..|+..|+-+..-|.....+..|.+-|....+. ...+|..+..+|.+.|... +..++|.++|..+.
T Consensus 560 d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 560 DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 345666776666777777777777756555442 1236777777777765432 45678888888887
Q ss_pred hhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCC--CCCcc
Q 005305 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF--KTTKNMWAALLTACRVNGNLELGKFAAEKLYGME--PEKLS 536 (703)
Q Consensus 461 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~~~~ 536 (703)
+ .-+.+...-|-+.-.++..|++.+|.++|.+... ..+..+|..+...|...|++..|.+.++..++.. .+++.
T Consensus 640 ~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 640 R--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred h--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 6 4456677777888889999999999999987642 2245689999999999999999999999887433 44677
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 537 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
....|+.++.++|+|.+|.+.....+...
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 88999999999999999999988776544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-12 Score=127.39 Aligned_cols=319 Identities=20% Similarity=0.241 Sum_probs=233.5
Q ss_pred cccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHH--hccCChHHH-HHHHHHHHHhCCCCCcchHHHH
Q 005305 95 AGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC--IGLRSIREV-KRVFSYMLSTGFEPDLYMRNRV 171 (703)
Q Consensus 95 ~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~--~~~~~~~~a-~~l~~~~~~~g~~~~~~~~~~L 171 (703)
+++=|.++.....|...++.-+|+.|...| ++.+...-..|+..- -...++.-+ .+-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 445677777888999999999999999998 777776666655432 233333322 33444555555 3333443
Q ss_pred HHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHH
Q 005305 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251 (703)
Q Consensus 172 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 251 (703)
|.|.+.+ -+|+ ...+...++.+||.|+++--..+.|.++|++-.....+.+..+|+.++.+.+ +..++
T Consensus 191 -----K~G~vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGK 258 (625)
T ss_pred -----ccccHHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccH
Confidence 4566655 4454 4446778999999999999999999999999998888999999999998754 44558
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHh----hcC----CCCcccHHHHHHHHHHcCCcHH-HHHHHHH
Q 005305 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD----EMS----EKTTVGWNTIIAGYALHGYSEE-ALDLYYE 322 (703)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~ 322 (703)
++..+|+...+.||..++|+++...++.|+++.|.+.+- +|+ +|...+|..+|..+.+.+++.+ |..+..+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 999999999999999999999999999999988766544 443 4788899999999999888755 4445555
Q ss_pred HHHC----CCCC----CHhhHHHHHHHHhccCCHHHHHHHHHHHHHcC----CCCc---hHHHHHHHhhHHhcCCHHHHH
Q 005305 323 MRDS----GVKM----DHFTFSMIIRICTRLASLEHAKQAHAGLVRHG----FGLD---IVANSALVDFYSKWGRIEDAR 387 (703)
Q Consensus 323 m~~~----g~~p----d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~Li~~y~k~g~~~~A~ 387 (703)
.+.. .++| |..-|.+.+..|.+..+.+.|.+++....... +.++ ..-|..+.++.+....++.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 2222 45568889999999999999999988765421 2222 234556777778888888888
Q ss_pred HHhhhcCc----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005305 388 HVFDKMLC----KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430 (703)
Q Consensus 388 ~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 430 (703)
..|+.|.. |+..+-..++.+..-.|.++-.-+++..|+..|-.
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 88888853 45555666677777777777777778777776543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-10 Score=118.74 Aligned_cols=462 Identities=13% Similarity=0.050 Sum_probs=275.6
Q ss_pred CcccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 005305 94 SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173 (703)
Q Consensus 94 ~~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 173 (703)
++..|-+.+. ..+.+.|..++.+..+. ++.+.. |.-++++..-++.|+.++....+. ++.+..+|.+-..
T Consensus 379 sv~LWKaAVe---lE~~~darilL~rAvec--cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~ 448 (913)
T KOG0495|consen 379 SVRLWKAAVE---LEEPEDARILLERAVEC--CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAK 448 (913)
T ss_pred hHHHHHHHHh---ccChHHHHHHHHHHHHh--ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHH
Confidence 3445655443 23444566666666553 222222 333444555566666666666543 4555666655555
Q ss_pred HHHhCCChHHHHHHHccCCC--------CCc-------------------------------------ccHHHHHHHHHh
Q 005305 174 MHVRCGMMIDARRLFDEMPE--------RNL-------------------------------------VSCNMIIAGMID 208 (703)
Q Consensus 174 ~y~~~g~~~~A~~~f~~m~~--------~d~-------------------------------------~~~~~li~~~~~ 208 (703)
.=-..|+.+...++.++-.. -|. .+|+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 55556666665555543210 111 234444444444
Q ss_pred CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 005305 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 288 (703)
.+.++-|..+|...++- ..-+...|......--..|..+.-..++..++..- +.....|-....-+...|++..|+.+
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 44455555555444332 11122333333333334455555555555555442 33444555555555566666666666
Q ss_pred HhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 005305 289 FDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365 (703)
Q Consensus 289 f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 365 (703)
+.+.-+. +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..---++..++|.+++++.++. ++.
T Consensus 607 l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~ 683 (913)
T KOG0495|consen 607 LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPD 683 (913)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCc
Confidence 6655431 3345666666666666777777777666553 344444444444444456667777777666665 333
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC--K-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 442 (703)
-...|-.+...|-..++++.|++.|..-.+ | .+..|-.+...=-+.|+.-.|..+|++.+..+.+ |...|...+..
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ 762 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRM 762 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHH
Confidence 445666666667777777777776665432 3 3345666666556666777777777776655322 44666667777
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~ 522 (703)
-.+.|..++|..+..+..+ ..+.+...|..-|-+..+.++-..+.+.+++.. -|+.+..++...+....+++.|+.
T Consensus 763 ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~ 838 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKARE 838 (913)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666665 345555666666666666666666666665553 355556666777778888999999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEE
Q 005305 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577 (703)
Q Consensus 523 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 577 (703)
-|.++...+|++..+|.-+...+.+.|.-++-.+++++..... +.-|..|..+
T Consensus 839 Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 839 WFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 9999999999999999999999999999999999998876543 3446677644
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-11 Score=120.61 Aligned_cols=439 Identities=14% Similarity=0.109 Sum_probs=282.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHH-HHHHHHhccCChHHHHHHHHHHHHhCCCCCc----chHHHHHHHHHhC
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYD-ALISACIGLRSIREVKRVFSYMLSTGFEPDL----YMRNRVLLMHVRC 178 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~-~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~----~~~~~Li~~y~~~ 178 (703)
|..+....+|+..|+-+.+.. .-||.-.+. .+-..+.+.+.+..|.+.+...+..-...+- .+.+.+--.+.+.
T Consensus 211 y~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred hhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 666667778888887777665 556554332 2234455666777777777666543211111 1233333445677
Q ss_pred CChHHHHHHHccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCC------------ChhhHHHHH-----H
Q 005305 179 GMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC------------GSRTFATMI-----R 239 (703)
Q Consensus 179 g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~~t~~~ll-----~ 239 (703)
|++++|+..|+...+ ||..+--.|+-++.--|+.++..+.|..|..-...| +....+..+ +
T Consensus 290 gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk 369 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLK 369 (840)
T ss_pred ccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHH
Confidence 888888888876644 665543334444555677777777777776432222 222222221 1
Q ss_pred HHhcCCChHHHHHHHHHHHH---hCCCCcHH-------------HH--------HHHHHHHHhCCCHHHHHHHHhhcCCC
Q 005305 240 ASAGLELISVGKQLHSCALK---MGFGDNVF-------------VS--------CALIDMYSKCGSIEDAQGVFDEMSEK 295 (703)
Q Consensus 240 a~~~~~~~~~a~~~~~~~~~---~g~~~~~~-------------~~--------~~Li~~y~~~g~~~~A~~~f~~m~~~ 295 (703)
-.-+.+ -..|++..-...+ --+.|+-. .+ -.-..-|.+.|+++.|.+++.-...+
T Consensus 370 ~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k 448 (840)
T KOG2003|consen 370 NMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK 448 (840)
T ss_pred HHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc
Confidence 111111 1112221111111 11112110 00 01123477899999999988887776
Q ss_pred CcccHHHH-----HHHHHHcC-CcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHH
Q 005305 296 TTVGWNTI-----IAGYALHG-YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369 (703)
Q Consensus 296 ~~~~~~~l-----i~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 369 (703)
|..+-++. +--|.+-| ++.+|.+.-....... +-|....+.--+.....|+++.|...+.+++...-.-....
T Consensus 449 dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~eal 527 (840)
T KOG2003|consen 449 DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEAL 527 (840)
T ss_pred cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHH
Confidence 65443222 22233333 4556655544443221 22222222222223457899999999999988643322223
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhc---CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHc
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKM---LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSR 445 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 445 (703)
| .+.-.|-+.|++++|+..|-++ ...++...-.+.+.|-...+..+|++++.+... +-| |...+..|...|-+
T Consensus 528 f-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 528 F-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQ 604 (840)
T ss_pred H-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhc
Confidence 3 3445678899999999999876 345666777788889999999999999987765 455 55788888899999
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCChhHHHHH
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTKNMWAALLTAC-RVNGNLELGKFA 523 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~-~~~g~~~~a~~~ 523 (703)
.|+-.+|.+.+-.--+ -++-+.++...|..-|....-+++|...|++. -++|+..-|..++..| ++.|++..|...
T Consensus 605 egdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred ccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999998766543 46678889889999999999999999999985 4589999999999888 688999999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 524 AEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 524 ~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
++.+...-|.|....-.|+.+....|.
T Consensus 683 yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 683 YKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999888874
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-11 Score=119.16 Aligned_cols=245 Identities=18% Similarity=0.163 Sum_probs=165.8
Q ss_pred cccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 005305 82 ESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160 (703)
Q Consensus 82 ~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g 160 (703)
.-+|+..|. ...++..||+ +++--..+.|.++|++..... .+.+..+||.+|.+-+ +..++++..+|+...
T Consensus 197 dL~~E~~PK---T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 197 DLLFETLPK---TDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASS----YSVGKKLVAEMISQK 268 (625)
T ss_pred HHHHhhcCC---CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHH----hhccHHHHHHHHHhh
Confidence 434444443 5678999999 999999999999999998776 6889999999997754 445588999999999
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHH----ccCC----CCCcccHHHHHHHHHhCCChhH-HHHHHHHhHH----cCC
Q 005305 161 FEPDLYMRNRVLLMHVRCGMMIDARRLF----DEMP----ERNLVSCNMIIAGMIDSGDYLE-AFLLFLDLWE----EFS 227 (703)
Q Consensus 161 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f----~~m~----~~d~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~ 227 (703)
+.||.+|+|+++...++.|+++.|++.+ .+|. +|...+|..+|.-+.+.+++.+ |..+..+... +-.
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 9999999999999999999988876544 4444 3888888888888888887744 3344444432 223
Q ss_pred CC----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC----CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCccc
Q 005305 228 DC----GSRTFATMIRASAGLELISVGKQLHSCALKMG----FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299 (703)
Q Consensus 228 ~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~ 299 (703)
+| |..-|.+.+..|.+..+.+.|.+++....... ++++. . ..+-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~-----------------------~-----~~fY 400 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ-----------------------H-----RNFY 400 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH-----------------------H-----HHHH
Confidence 33 34567778888888888888888876554321 11110 0 0112
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 005305 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362 (703)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 362 (703)
|..+....++....+.-+..|..|.-.-.-|+..+...++.|....+.++-...++..++..|
T Consensus 401 yr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 401 YRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 333444445555555555666666555555666666666666666666666666665555544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-11 Score=127.53 Aligned_cols=329 Identities=15% Similarity=0.179 Sum_probs=188.6
Q ss_pred CChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 005305 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289 (703)
Q Consensus 210 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 289 (703)
|+.++|.+++.+..+.... +...|-+|...+-..|+.+++...+-.+.... +.|...|..+.+...+.|.++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 5555555555555544222 34455555555555555555554443333222 444455555555555555555555555
Q ss_pred hhcCCCCcccHHHH---HHHHHHcCCcHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 005305 290 DEMSEKTTVGWNTI---IAGYALHGYSEEALDLYYEMRDSGVKMDHF-TFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365 (703)
Q Consensus 290 ~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 365 (703)
.+..+.++.-|-.. +..|.+.|+...|++-|.++.+... |... -+-.
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d---------------------------- 281 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIED---------------------------- 281 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHH----------------------------
Confidence 55544333323222 2344555555555555555554321 1111 1111
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------------
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC--K---NVISWNALIAGYGNHGRGEEAVELFEQMLLN------------- 427 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------------- 427 (703)
..-..+..|...++-+.|.+.++.... . +....|.++..|....+++.|......+...
T Consensus 282 ---~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 282 ---LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 111122333333434444444443322 1 2223444555555555555555554444431
Q ss_pred --------------CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcC--CCCchHHHHHHHHHHHhcCChHHHHHH
Q 005305 428 --------------GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK--IKPRAMHYACMIELLGREGLLDEAFAL 491 (703)
Q Consensus 428 --------------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~ 491 (703)
++.++...+ .+.-+..+....+....+...... .. ..-+...|.-+.++|...|++.+|+++
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 122222221 112223344444444444443443 34 334567888999999999999999999
Q ss_pred HHhCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 005305 492 IRGAPFK---TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568 (703)
Q Consensus 492 ~~~m~~~---p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 568 (703)
|..+... .+..+|--+...+...|.+++|.+.+++++...|++..+-..|+.+|.+.|+.++|.+.+..|..-+-..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 9886432 2567999999999999999999999999999999999999999999999999999999999987555445
Q ss_pred CCceeE
Q 005305 569 LPACSW 574 (703)
Q Consensus 569 ~~~~s~ 574 (703)
.+++.|
T Consensus 517 ~e~~a~ 522 (895)
T KOG2076|consen 517 AEACAW 522 (895)
T ss_pred hhhccc
Confidence 567777
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-10 Score=116.47 Aligned_cols=415 Identities=14% Similarity=0.044 Sum_probs=241.2
Q ss_pred HHH-HHhcCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-cchHHHHHHHHHh
Q 005305 101 IEK-LVLNKRYREALELFEILEFEGGFDVG-SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD-LYMRNRVLLMHVR 177 (703)
Q Consensus 101 li~-~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~-~~~~~~Li~~y~~ 177 (703)
.-. +.++|++++|++.|.+.... .|| ..-|...-.+|...|++++..+--...++. .|+ +-.+..-..++-.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 344 78889999999999999884 477 666777777788889998888777777654 343 3345555567777
Q ss_pred CCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHh--------HH-c--CCCCChhhHHHHHHHHhcCCC
Q 005305 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL--------WE-E--FSDCGSRTFATMIRASAGLEL 246 (703)
Q Consensus 178 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~-~--g~~p~~~t~~~ll~a~~~~~~ 246 (703)
.|++++|+. -+|-.++..+|....-..-+.+++... .+ . .+-|......+.+..+-..-.
T Consensus 196 lg~~~eal~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 788777753 122333333333332222222222221 11 1 122333322222222111000
Q ss_pred hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC-CCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC-GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
. .+...+-..|...-..+=..|... ..+..|...+.+-.. ...... ..+..++-+ +.|.
T Consensus 267 ~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~------~~~~~~--~~n~~d~~l---e~~A- 326 (606)
T KOG0547|consen 267 P--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECL------GSESSL--SVNEIDAEL---EYMA- 326 (606)
T ss_pred c--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhh------hhhhhc--cccccchhH---HHHH-
Confidence 0 000000011222222222222111 112222222221100 000000 000000000 0000
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHH
Q 005305 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWN 402 (703)
Q Consensus 326 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~ 402 (703)
.+....-.-+.-.|+.-.+.+-++.+++....++ ..|--+..+|....+.++..+.|+... ..|..+|-
T Consensus 327 -------~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYy 398 (606)
T KOG0547|consen 327 -------EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYY 398 (606)
T ss_pred -------HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhH
Confidence 0000000011224566666666777766543322 224455566777777777777777663 23445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh
Q 005305 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481 (703)
Q Consensus 403 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 481 (703)
.=...+.-.+++++|..=|++.+. +.|+. ..|..+-.+..+.+.++++...|+..++ .++..++.|+.....+..
T Consensus 399 HRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 399 HRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTD 474 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhh
Confidence 555555666778889998988877 56654 6777777777888899999999999987 577778899999999999
Q ss_pred cCChHHHHHHHHh-CCCCCC---------HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCh
Q 005305 482 EGLLDEAFALIRG-APFKTT---------KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551 (703)
Q Consensus 482 ~g~~~~A~~~~~~-m~~~p~---------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 551 (703)
.+++++|.+.|+. +..+|+ +.+-.+++..- -.+++.+|..+.+++++++|..-.+|..|+.+-.+.|+.
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence 9999999999986 444444 22333333333 338999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005305 552 KEAAEVIRTLR 562 (703)
Q Consensus 552 ~~A~~~~~~m~ 562 (703)
++|.++|++..
T Consensus 554 ~eAielFEksa 564 (606)
T KOG0547|consen 554 DEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-11 Score=117.46 Aligned_cols=199 Identities=19% Similarity=0.271 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHhhcCCCCcccHHHHHH---HHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 005305 279 CGSIEDAQGVFDEMSEKTTVGWNTIIA---GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355 (703)
Q Consensus 279 ~g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 355 (703)
.|++++|.+.+.+....|...-.+|.. .+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|.+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 455666666665555544433222221 234455556666555544321 1223334444444555555555555555
Q ss_pred HHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhc---CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 005305 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM---LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432 (703)
Q Consensus 356 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 432 (703)
.++... ++.|+.+.+.|.+.|-+.|+-..|.+.+-+- -.-|+.+..-|..-|....-.++|+..|++.-- ++|+
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 444332 3334555555555555555555554443221 112333323333444444444455555544432 4455
Q ss_pred HHHHHHHHHHH-HccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcC
Q 005305 433 HVTFLAVLSAC-SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483 (703)
Q Consensus 433 ~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 483 (703)
..-|-.++..| .+.|++++|..+++..-+ .++.+......|+...+..|
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc
Confidence 54444444333 234455555555444433 33444444444444443333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-13 Score=140.04 Aligned_cols=255 Identities=17% Similarity=0.116 Sum_probs=109.4
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH-HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCC
Q 005305 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR-ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382 (703)
Q Consensus 304 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 382 (703)
...+.+.|++++|++++++-.....+|+...|-.++. .+-..++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4455566777777776654433322344444433333 344566677777777777665433 45566667766 67788
Q ss_pred HHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 005305 383 IEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459 (703)
Q Consensus 383 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 459 (703)
+++|.+++...- .++...|..++..+.+.|+++++..+++++.... ..++...|..+...+.+.|+.++|.+.++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888877662 3566778888888899999999999999877533 2345667777888889999999999999999
Q ss_pred HhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF--KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 460 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
.+. .+.+......++..+...|+.+++.++++.... +.|+..|..+..++...|+.++|...++++....|+|+..
T Consensus 173 l~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 173 LEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 872 233577788899999999999987777765421 3455678899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 538 YVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 538 ~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
...+++++...|+.++|.+++++.-
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999987754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-09 Score=108.17 Aligned_cols=479 Identities=13% Similarity=0.099 Sum_probs=287.4
Q ss_pred CCcccchhhcccccCccCC-CCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHH
Q 005305 73 NKIYTEELKESSLPDTQMK-KPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK 150 (703)
Q Consensus 73 ~~~~~aa~~~~~f~~~~~~-~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 150 (703)
+++..| +.+|+..... ..|...|---+. -.++.....|..+++.....= .+.|.. |-.-+..--..|++..|+
T Consensus 87 ~e~~RA---RSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdql-WyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 87 KEIQRA---RSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQL-WYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHH---HHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHH-HHHHHHHHHHhcccHHHH
Confidence 445555 6666554332 124445555555 556666666666666665432 122222 222222233456666677
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHc-CC
Q 005305 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP--ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE-FS 227 (703)
Q Consensus 151 ~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~ 227 (703)
++|+.-.+ ..|+...|++.|++=.+...++.|+.+++... .|++.+|--..+-=.++|+..-|..+|....+. |-
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 77766554 36666677777777666667777777666543 366666666666666666666666666665432 10
Q ss_pred -CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--HHHHHHHHHHHHhCCCHHHHHHH--------HhhcCCC-
Q 005305 228 -DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN--VFVSCALIDMYSKCGSIEDAQGV--------FDEMSEK- 295 (703)
Q Consensus 228 -~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~--------f~~m~~~- 295 (703)
.-+...|.++..-=.....++.|.-++..++..- +.+ ..++..+...=-+-|+....... ++.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 0112223333333334455666666666666542 222 33444444443344443332222 1222222
Q ss_pred --CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHh-------hHHHHHHHH---hccCCHHHHHHHHHHHHHcCC
Q 005305 296 --TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF-------TFSMIIRIC---TRLASLEHAKQAHAGLVRHGF 363 (703)
Q Consensus 296 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~ll~a~---~~~~~~~~a~~~~~~~~~~g~ 363 (703)
|-.+|--.+..-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+.+.++++++..++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 3345666666666678888889999888764 555321 222222222 3467888889999888883 3
Q ss_pred CCchHHHHHHHhhHH----hcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHH
Q 005305 364 GLDIVANSALVDFYS----KWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTF 436 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~----k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~ 436 (703)
+-..+++.-+=-||+ ++.++..|++++...+ .|-...+...|..=.+.+.++....++++.++- .| |..+|
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W 474 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAW 474 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHH
Confidence 445566666555555 5788889998888764 466677887888888888999999999998884 44 44788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH---
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTKNMWAALLTACR--- 512 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~--- 512 (703)
......-...|+.+.|+.+|.-++..-.+......|.+.|+-=...|.++.|..+++++ ...+...+|-++..--.
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccc
Confidence 87777777889999999999888774444444567778888778889999999998875 33455667776655433
Q ss_pred --HcC-----------ChhHHHHHHHHHh----CCCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 513 --VNG-----------NLELGKFAAEKLY----GMEPEK--LSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 513 --~~g-----------~~~~a~~~~~~~~----~~~p~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+.+ +...|+.+|+++. +..|.. ........++-...|...+...+-..|++
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 233 4566777777765 233321 12233344445566777777777666653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-09 Score=108.50 Aligned_cols=392 Identities=13% Similarity=0.066 Sum_probs=250.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHH
Q 005305 142 GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLL 218 (703)
Q Consensus 142 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~ 218 (703)
...+.+.|+-++...++.- +.+.. |.-+|++...++.|.++++...+ .+...|-+-...=-.+|+.+....+
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 4445556777777666541 22333 33344555666777777665543 4566676555555567777766666
Q ss_pred HHH----hHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--HHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 005305 219 FLD----LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN--VFVSCALIDMYSKCGSIEDAQGVFDEM 292 (703)
Q Consensus 219 ~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m 292 (703)
..+ +...|+..|...|..=..+|-..|..-.+..+...++..|++.. ..+|+.-...+.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 543 34567777777777777777777777777777777777665432 456777777777777788777777765
Q ss_pred CC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHH
Q 005305 293 SE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369 (703)
Q Consensus 293 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 369 (703)
.+ .+...|...+..--..|..++-..+|++.... ++-....+.......-..|+...|+.++..+.+.... +..+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHH
Confidence 54 24456766666666677777777777777765 2223333333344445567777777777777775433 5667
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHcc
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRS 446 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 446 (703)
+-+-+..-....+++.|+.+|.+.. .++...|.--+..---.+..++|++++++.++. -|+- ..|..+...+-+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence 7777777777777777777777663 455556655555555567777777777776663 5555 4555555666677
Q ss_pred CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005305 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF--KTTKNMWAALLTACRVNGNLELGKFAA 524 (703)
Q Consensus 447 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~ 524 (703)
++++.|+..|..=.+ ..+-.+..|-.|...=.+.|.+-.|..++++... +.|...|...+..-.++|+.+.|...+
T Consensus 699 ~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 777777776655443 3344455666666666777777777777776432 335667777777777777777777777
Q ss_pred HHHhCCCCCCcchHHHHHHH
Q 005305 525 EKLYGMEPEKLSNYVVLLNI 544 (703)
Q Consensus 525 ~~~~~~~p~~~~~~~~l~~~ 544 (703)
.++++--|++...|.--+.+
T Consensus 777 akALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred HHHHHhCCccchhHHHHHHh
Confidence 77666556554444333333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-10 Score=123.84 Aligned_cols=284 Identities=14% Similarity=0.038 Sum_probs=140.8
Q ss_pred CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHH--HHHHHHHHHHhCCCHHHHH
Q 005305 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF--VSCALIDMYSKCGSIEDAQ 286 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~ 286 (703)
.|++++|.+.+....+..-.| ...|.....+....|+++.+.+.+..+.+.. |+.. ........+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555433321111 1222222333455666666666666665532 3332 2223356677777888877
Q ss_pred HHHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005305 287 GVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363 (703)
Q Consensus 287 ~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 363 (703)
+.++++.+. ++.....+...|.+.|++++|.+++..+.+.+..++. .+..+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 777776542 4455667777778888888888888888776544222 1110000
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 440 (703)
.++..++....+..+.+...++++.++. .++.....+...+...|+.++|.+++++..+. .||... .++
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l 301 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLL 301 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHH
Confidence 0111111111112223333333333321 24444455555555555555555555555542 223211 112
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhH
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTKNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~ 519 (703)
.+....++.+++.+..+...+ ..+-|+..+.++..++.+.|++++|.+.|+.. ...|+...+..|...+...|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 222233555555555555544 22333444555555555555566555555542 334555555555555556666666
Q ss_pred HHHHHHHHhC
Q 005305 520 GKFAAEKLYG 529 (703)
Q Consensus 520 a~~~~~~~~~ 529 (703)
|...+++.+.
T Consensus 380 A~~~~~~~l~ 389 (398)
T PRK10747 380 AAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHh
Confidence 6555555544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-09 Score=115.69 Aligned_cols=321 Identities=11% Similarity=0.055 Sum_probs=199.1
Q ss_pred cccCCCCcccchhhcccccCccCCCC-CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC
Q 005305 68 PRPKPNKIYTEELKESSLPDTQMKKP-SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRS 145 (703)
Q Consensus 68 ~y~k~~~~~~aa~~~~~f~~~~~~~p-~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~ 145 (703)
.+++ |++.+| .+++.++....| +...|.++-. |-+.|+.++++..+-.+-... +-|..-|..+-.-..+.|+
T Consensus 149 lfar-g~~eeA---~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 149 LFAR-GDLEEA---EEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHh-CCHHHH---HHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhccc
Confidence 4667 999999 999998877644 4567999999 999999999998876665543 5567888888888889999
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCc-ccH-------HHHHHHHHhCCChhHHHH
Q 005305 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL-VSC-------NMIIAGMIDSGDYLEAFL 217 (703)
Q Consensus 146 ~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~-~~~-------~~li~~~~~~g~~~~A~~ 217 (703)
+++|.-.+..+++.. +++....---+.+|-+.|+...|..-|.++.+.+. +.| -.++..|...++-+.|++
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999876 55555555567889999999999888877755222 111 123444555566677777
Q ss_pred HHHHhHHcC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH---------------------------hCCCCcHHH-
Q 005305 218 LFLDLWEEF-SDCGSRTFATMIRASAGLELISVGKQLHSCALK---------------------------MGFGDNVFV- 268 (703)
Q Consensus 218 ~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~---------------------------~g~~~~~~~- 268 (703)
.++.....+ -..+..+++.++..+.+...++.+......... .++.++..+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 766665421 122333444555555555555555544433333 012223333
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC----CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 005305 269 SCALIDMYSKCGSIEDAQGVFDEMSE----KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344 (703)
Q Consensus 269 ~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 344 (703)
...+--.-.+.+...+++.-|-.... .++..|.-+..+|.+.|++.+|+.+|..+...-.--+.+.|-.+...+-.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 22222222233444444433322221 13334556666677777777777777666654333345556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcC
Q 005305 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396 (703)
Q Consensus 345 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~ 396 (703)
.+..++|.+.+..++.... .+..+--+|...|-+.|+.++|.+++..+..|
T Consensus 462 l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 6777777777776666432 24445555666666777777777777665433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-10 Score=120.87 Aligned_cols=289 Identities=15% Similarity=0.059 Sum_probs=150.3
Q ss_pred hCCChhHHHHHHHHhHHcCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHH
Q 005305 208 DSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286 (703)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 286 (703)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+++..+.+..-.+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456677777666655443 23322 233334455566777777777766655431222234444566667777777777
Q ss_pred HHHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005305 287 GVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363 (703)
Q Consensus 287 ~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 363 (703)
..++.+.+. +...+..+...|.+.|++++|.+++..+.+.++.+.......-..+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--------------------- 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------
Confidence 777776542 44456667777777777777777777777765432221111111111
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHH---H
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF---L 437 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~ 437 (703)
..+++.-......+...+.++..+. .+...+..+...+...|+.++|++++++..+. .||.... .
T Consensus 233 -------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 233 -------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred -------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0001000111112233333333332 25555666666666666666666666666653 3333210 1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh---CCCCCCHHHHHHHHHHHHHc
Q 005305 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG---APFKTTKNMWAALLTACRVN 514 (703)
Q Consensus 438 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~ll~a~~~~ 514 (703)
.........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. ....||...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111112233555666666665554222222213445666666666666666666662 23456666666666666666
Q ss_pred CChhHHHHHHHHHh
Q 005305 515 GNLELGKFAAEKLY 528 (703)
Q Consensus 515 g~~~~a~~~~~~~~ 528 (703)
|+.++|..++++.+
T Consensus 384 g~~~~A~~~~~~~l 397 (409)
T TIGR00540 384 GDKAEAAAMRQDSL 397 (409)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-10 Score=119.35 Aligned_cols=284 Identities=11% Similarity=0.043 Sum_probs=164.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHH--HHHHHHHhCCChHH
Q 005305 106 LNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN--RVLLMHVRCGMMID 183 (703)
Q Consensus 106 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~--~Li~~y~~~g~~~~ 183 (703)
..|++++|.+.+....+.. -.| ...|.....+..+.|+++.+.+.+..+.+. .|+..... .....+...|+.+.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~-~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA-EQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc-cch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3577777776666554432 011 222333334445667777777777777654 34443222 33456667777777
Q ss_pred HHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005305 184 ARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM 260 (703)
Q Consensus 184 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (703)
|...++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------------------- 228 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------------------- 228 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------------------
Confidence 7777766654 24445666667777777777777777777665443211 111000
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHH
Q 005305 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337 (703)
Q Consensus 261 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 337 (703)
..++..++....+..+.+...++++.++. .++.....+...+...|+.++|.+++++..+. .||... .
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~ 299 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--V 299 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--H
Confidence 01122222222233344555555555543 24555666666777777777777777666653 344311 1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHH
Q 005305 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGE 415 (703)
Q Consensus 338 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~ 415 (703)
++.+....++.+.+.+..+...+.. +.|.....++..++.+.|++++|.+.|+... .|+...+-.+...+.+.|+.+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 2233334466677777666666653 2356667777777777888888888887773 466667777777788888888
Q ss_pred HHHHHHHHHHH
Q 005305 416 EAVELFEQMLL 426 (703)
Q Consensus 416 ~A~~l~~~m~~ 426 (703)
+|.+++++-..
T Consensus 379 ~A~~~~~~~l~ 389 (398)
T PRK10747 379 EAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHh
Confidence 88887776643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-09 Score=115.83 Aligned_cols=277 Identities=12% Similarity=0.023 Sum_probs=161.5
Q ss_pred CCCHHHHHHHHhhcCCC--C-cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHhccCCHHHHHH
Q 005305 279 CGSIEDAQGVFDEMSEK--T-TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF--TFSMIIRICTRLASLEHAKQ 353 (703)
Q Consensus 279 ~g~~~~A~~~f~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a~~ 353 (703)
.|+++.|.+.+.+..+. + ...+-.....+.+.|+++.|.+.|.+..+. .|+.. .-..........|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444331 1 111222233344445555555555554432 12221 11122333444555555555
Q ss_pred HHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcC---ChhhHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK---NVISWN----ALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 354 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.++.+.+..+ .+..+...+..+|...|++++|.+.+..+.+. +...+. ....++...+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555555432 24445555555566666666555555555322 111111 111122233333334445555554
Q ss_pred cCC---CcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHH-HHHHHHHHH--hcCChHHHHHHHHhC-CCCC
Q 005305 427 NGM---RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH-YACMIELLG--REGLLDEAFALIRGA-PFKT 499 (703)
Q Consensus 427 ~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~--~~g~~~~A~~~~~~m-~~~p 499 (703)
... +.+...+..+...+...|+.++|.+.++...+. .|+... ...++..+. ..++.+++.+.+++. ...|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 321 126678888889999999999999999999873 233321 001333333 457888888888763 3345
Q ss_pred CH---HHHHHHHHHHHHcCChhHHHHHHH--HHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 500 TK---NMWAALLTACRVNGNLELGKFAAE--KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 500 ~~---~~~~~ll~a~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
+. ....++...|.+.|++++|+..++ ..++..|++ ..+..++.++.+.|+.++|.+++++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 566788999999999999999999 577888984 567899999999999999999998854
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-12 Score=127.64 Aligned_cols=252 Identities=17% Similarity=0.126 Sum_probs=104.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDA-LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 182 (703)
+.+.|++++|+++++...... .+|+...|-. +...+...++.+.|.+.++.+.+.+ +.++..+..++.. ...++++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccccc
Confidence 888999999999996544332 2455545444 4445556788999999999998876 3356677777777 6889999
Q ss_pred HHHHHHccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 005305 183 DARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF-SDCGSRTFATMIRASAGLELISVGKQLHSCALK 259 (703)
Q Consensus 183 ~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 259 (703)
+|.++++..-+ ++...+..++..+.+.++++++.++++...... ..++...|..+...+.+.|+.++|...++.+++
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99988876633 566778888888999999999999999876533 345666777788888889999999999999988
Q ss_pred hCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC---CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHH
Q 005305 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS---EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336 (703)
Q Consensus 260 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 336 (703)
.. |.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|++++|+..|++..... +.|..+..
T Consensus 175 ~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~ 252 (280)
T PF13429_consen 175 LD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL 252 (280)
T ss_dssp H--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence 76 5568888889999999999988777776553 3567788889999999999999999999887752 34666777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 005305 337 MIIRICTRLASLEHAKQAHAGLVR 360 (703)
Q Consensus 337 ~ll~a~~~~~~~~~a~~~~~~~~~ 360 (703)
.+..++...|+.+.|.++..++.+
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHT-----------------
T ss_pred cccccccccccccccccccccccc
Confidence 777778888888888777766543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-10 Score=122.00 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=92.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 475 (703)
.+.+|-++...|..+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.... .++.+|+++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAw 492 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAW 492 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHH
Confidence 445666666666666666666666666655 345 335555554555555566666666655433 444555543
Q ss_pred ---HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 476 ---IELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 476 ---i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
.-.|.+.++++.|+-.|++. .+.| +.+....+...+.+.|+.++|.+.+++++-++|.|+-.-+..+.++...++
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 33455666666666666553 3344 334444555555666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHH
Q 005305 551 LKEAAEVIRTLR 562 (703)
Q Consensus 551 ~~~A~~~~~~m~ 562 (703)
+++|...+++++
T Consensus 573 ~~eal~~LEeLk 584 (638)
T KOG1126|consen 573 YVEALQELEELK 584 (638)
T ss_pred hHHHHHHHHHHH
Confidence 666666666665
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-08 Score=100.09 Aligned_cols=382 Identities=15% Similarity=0.120 Sum_probs=198.3
Q ss_pred hCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 005305 177 RCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253 (703)
Q Consensus 177 ~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 253 (703)
..+++..|+.+|+.... +++..|--.+..=.++.....|..++++....-+..|.. |-.-+-.=-..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHH
Confidence 34455556666665543 445555555666666666666666666655432222221 11222222345666666666
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC--CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCC
Q 005305 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS--EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331 (703)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 331 (703)
|..-.+ ..|+...|++.|+.=.+-..++.|..++++.. .|++.+|---..--.++|+..-|..+|....+. -.|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 665554 35666667777766666666667776666643 456666665555555666666666666655442 112
Q ss_pred Hh----hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-chHHHHHHHhhHHhcCCHH---HHHHH-----hhhcCcC--
Q 005305 332 HF----TFSMIIRICTRLASLEHAKQAHAGLVRHGFGL-DIVANSALVDFYSKWGRIE---DARHV-----FDKMLCK-- 396 (703)
Q Consensus 332 ~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~---~A~~~-----f~~m~~~-- 396 (703)
.. .|++...--.+....+.|..++..++..-... ....|..+...--+-|+.. ++.-- ++.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 22 22222222234455666666666666642221 1334444443333344432 22211 1222222
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--H-----HHHHHHHHH---HccCCHHHHHHHHHHhHhhcCC
Q 005305 397 -NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH--V-----TFLAVLSAC---SRSGLSERGWEIFQSMSRDHKI 465 (703)
Q Consensus 397 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~-----t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~ 465 (703)
|-.+|--.+..-...|+.+...++|++.+.. ++|-. . .|.-+=-+| ....+++.++++|+...+ -+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lI 396 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LI 396 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hc
Confidence 3345555555555566666666666666643 44422 1 111111111 234566666666666554 34
Q ss_pred CCchHHHHHHHHHHH----hcCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHH
Q 005305 466 KPRAMHYACMIELLG----REGLLDEAFALIRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540 (703)
Q Consensus 466 ~p~~~~~~~li~~~~----~~g~~~~A~~~~~~-m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 540 (703)
+....++.-+--+|+ |+-++..|.+++.. ++.-|-..++...+..-.+.++++.-+.++++.++..|.+..+|.-
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 444444444433333 55566666666543 4455555666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 541 LLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 541 l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
.+.+-...|++|.|..+|.-......
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 66666666666666666665554443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-09 Score=114.93 Aligned_cols=455 Identities=14% Similarity=0.093 Sum_probs=246.6
Q ss_pred CCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHH
Q 005305 92 KPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170 (703)
Q Consensus 92 ~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 170 (703)
.||-++|..+|. |+..|+.+.|- +|.-|.-.. .+.+...|+.++.+....++.+.++ .|...+|+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 356677777777 77777776666 666666555 5566666666666666666655554 455667777
Q ss_pred HHHHHHhCCChHH---HHHHHccCCC---C----Ccc---------------cHHHHHHHHHhCCChhHHHHHHHHhHHc
Q 005305 171 VLLMHVRCGMMID---ARRLFDEMPE---R----NLV---------------SCNMIIAGMIDSGDYLEAFLLFLDLWEE 225 (703)
Q Consensus 171 Li~~y~~~g~~~~---A~~~f~~m~~---~----d~~---------------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 225 (703)
|...|...|++.. .++.+..+.. + ... .-...+.-....|-++.+++++..+...
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 7777777766543 2221111100 0 000 0111223333344455555554444221
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC----cccHH
Q 005305 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT----TVGWN 301 (703)
Q Consensus 226 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~----~~~~~ 301 (703)
... .++..+++-+..... ..+++.......--.++..++.++++.-.-.|+++.|..++.+|.++. ..-|-
T Consensus 169 a~~---~p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 169 AWN---APFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred ccc---chHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 100 011113444443322 233333333222115888889999998888999999999999998753 22233
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHH-----------HHHHHH----------
Q 005305 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA-----------HAGLVR---------- 360 (703)
Q Consensus 302 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~-----------~~~~~~---------- 360 (703)
.++-+ .+...-+..+++-|++.|+.|++.|+..-+..+...|....+... ...+.+
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 44444 777788888888899999999999998888887775553332211 111110
Q ss_pred ---------------cCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-------CChhhHHHHHHHHHhcCCHH---
Q 005305 361 ---------------HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-------KNVISWNALIAGYGNHGRGE--- 415 (703)
Q Consensus 361 ---------------~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~~~~~~~~li~~~~~~g~~~--- 415 (703)
.|+.....+|.-.+. ....|.-++.+++-..+.. .++..+..++.-|.+.-+..
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 011111112211111 1113444444444444322 23334444443332211100
Q ss_pred ------HHHHH---------HHHHHHcCCCcCH----------------------------HHHHHHHHHHHccCCHHHH
Q 005305 416 ------EAVEL---------FEQMLLNGMRPNH----------------------------VTFLAVLSACSRSGLSERG 452 (703)
Q Consensus 416 ------~A~~l---------~~~m~~~g~~p~~----------------------------~t~~~ll~a~~~~g~~~~a 452 (703)
.++.. ..+... ...||. ..-+.++..|.+.-+..++
T Consensus 400 ~i~~~~qgls~~l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~ 478 (1088)
T KOG4318|consen 400 RIYYAGQGLSLNLNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKI 478 (1088)
T ss_pred HHHHHHHHHHhhhchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000000 012222 1122333344444444444
Q ss_pred HHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF-----KTTKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 453 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
+..-+.... .-+ ...|..||+.+.+...+++|..+.++..- .-|..-+..+.+...+++....+..+.++.
T Consensus 479 l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ 554 (1088)
T KOG4318|consen 479 LCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYED 554 (1088)
T ss_pred HHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhh
Confidence 433332222 122 25788999999999999999999887642 224445677788888888888887777666
Q ss_pred hC---CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeE
Q 005305 528 YG---MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574 (703)
Q Consensus 528 ~~---~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 574 (703)
.+ ..|.-.....-+.+.-+.+|+.+.-.++.+-+...|+.. .|--|
T Consensus 555 ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 555 KSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred hHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 53 334334556677788889999999999999999888865 34444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-08 Score=99.58 Aligned_cols=326 Identities=13% Similarity=0.016 Sum_probs=225.2
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccH-HHHHHHH
Q 005305 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW-NTIIAGY 307 (703)
Q Consensus 229 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~-~~li~~~ 307 (703)
-|.+-+-......-+.|..+.|...+...+..- |-.-..|..| ..-..+.+.+..+....+..+...- --+..+|
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL---~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLEL---SELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHH---HHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 344433333344455666777777666655431 3333333333 3334455555555544443321111 1233456
Q ss_pred HHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CchHHHHHHHhhHHhcCCHH-
Q 005305 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG--LDIVANSALVDFYSKWGRIE- 384 (703)
Q Consensus 308 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~k~g~~~- 384 (703)
....+.++++.-.......|++-+...-+-...+.-...++++|..+|+++.+..+- .|..+|+.++-.-..+..+.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 666677888888888877776555544444444456678899999999999887421 25666766653322222222
Q ss_pred HHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhc
Q 005305 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDH 463 (703)
Q Consensus 385 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 463 (703)
-|..++ .+.+--+.|.-.+.+-|+-.++.++|...|++.++ +.|.. ..|+.+..-|....+...|.+-++.+++
T Consensus 318 LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 318 LAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred HHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 222222 22233345555667778888999999999999987 46665 6677777889999999999999999987
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 464 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
--+.|-..|-.|..+|.-.+.+.-|+-.|++. ..+| |...|.+|...|.+.++.++|+..+++++.....+..+|..|
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 34557788999999999999999999999885 4455 778999999999999999999999999998777677899999
Q ss_pred HHHHHhCCChHHHHHHHHHHHh
Q 005305 542 LNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 542 ~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+++|-+.++.++|...+++-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999988664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-10 Score=118.25 Aligned_cols=275 Identities=15% Similarity=0.057 Sum_probs=211.3
Q ss_pred CHHHHHHHHhhcCC--CCcc-cHHHHHHHHHHcCCcHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 005305 281 SIEDAQGVFDEMSE--KTTV-GWNTIIAGYALHGYSEEALDLYYEMRDSG--VKMDHFTFSMIIRICTRLASLEHAKQAH 355 (703)
Q Consensus 281 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 355 (703)
+..+|...|..++. .|+. ....+..+|...+++++|.++|+..++.. ..-+..+|+++|-.+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46788888888664 2433 33456778999999999999999987742 11255678877755432 1122222
Q ss_pred H-HHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 005305 356 A-GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK---NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431 (703)
Q Consensus 356 ~-~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 431 (703)
. .+++. -+..+.+|.++.+.|.-+++.+.|.+.|++..+- ...+|+.+..-+.....+|.|+..|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 22332 2346789999999999999999999999998654 456788888888888999999999998875 556
Q ss_pred CH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005305 432 NH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAAL 507 (703)
Q Consensus 432 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 507 (703)
.. ..|..+...|.+.++++.|.-.|+.+.+ +.| +.....++...+-+.|+.++|++++++. ...| |+..---.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 55 6777888999999999999999998865 555 4556677778889999999999999984 2333 44444445
Q ss_pred HHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 508 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...+...+++++|.+.++++.++-|++...|..++.+|.+.|+.+.|..-|.-|.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5566778999999999999999999999999999999999999999999887776543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-09 Score=102.81 Aligned_cols=270 Identities=13% Similarity=0.120 Sum_probs=185.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCc------chHHHH
Q 005305 98 CSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL------YMRNRV 171 (703)
Q Consensus 98 ~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~------~~~~~L 171 (703)
|-.=+.+.-++++++|+++|-+|.+.. +-+..+-.+|-+.+.+.|..+.|..+|+.+.++ ||. ...-.|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL 113 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQL 113 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Confidence 444444666778999999999998864 445566777888899999999999999999874 443 233456
Q ss_pred HHHHHhCCChHHHHHHHccCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChh----hHHHHHHHHhcC
Q 005305 172 LLMHVRCGMMIDARRLFDEMPERNLV---SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGL 244 (703)
Q Consensus 172 i~~y~~~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~ 244 (703)
..=|...|-+|.|+.+|..+.+.+.. ....|+..|-+..+|++|++.-+++.+.+..+..+ -|.-+.......
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 67788899999999999988774333 45568899999999999999999998877665543 344555555666
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcc----cHHHHHHHHHHcCCcHHHHHHH
Q 005305 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV----GWNTIIAGYALHGYSEEALDLY 320 (703)
Q Consensus 245 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~----~~~~li~~~~~~g~~~~A~~l~ 320 (703)
.+.+.|...+..+.+.. +..+.+.-.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|++++.+..+
T Consensus 194 ~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77888888887777765 445556666777788888888888888887766543 4566677888888888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhH
Q 005305 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377 (703)
Q Consensus 321 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 377 (703)
.++.+....++.. ..+-..-....-.+.|.....+-++. .|+...+..||+.-
T Consensus 273 ~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 273 RRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 7777653333322 22222222223333444433333332 35555555555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-07 Score=94.33 Aligned_cols=359 Identities=13% Similarity=0.066 Sum_probs=221.5
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHH--HHH
Q 005305 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA--TMI 238 (703)
Q Consensus 161 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll 238 (703)
...|.+..-..--.+-+.|..+.|+..|-+....-+..|.+-+....-..+.+.+..+. .|...|..-+. -+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHH
Confidence 34555444433445556788888888887776654555555443322222222222111 12221222111 233
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC------cccHHHHHHHHHHcCC
Q 005305 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT------TVGWNTIIAGYALHGY 312 (703)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~ 312 (703)
.++-.....+++.+-.......|++.+...-+-...++-...++++|+.+|+++...| ..+|+.++ |+++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 4555556777777777777777887777777766667777788888888888887643 34555544 333332
Q ss_pred cHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhh
Q 005305 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392 (703)
Q Consensus 313 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 392 (703)
. .+..+.+-...--+--+.|...+.+-|+-.++-+.|...|+.+++.+.. ...+|+-+.+-|....+...|.+.++.
T Consensus 313 s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 S--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred H--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2 2222222111111223446666777777777788888888888876532 456777777888888888888888877
Q ss_pred cC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc
Q 005305 393 ML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468 (703)
Q Consensus 393 m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 468 (703)
.. .+|-..|-.+..+|.-.+.+.=|+-.|++..+ .+|+ ...|.+|...|.+.++.++|..-|.+... .| ..+
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-~~-dte 465 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-LG-DTE 465 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-cc-ccc
Confidence 64 35667788888888888888888888888776 4664 47778888888888888888888887776 22 234
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-------P-FKTTKN-MWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
...+..|.++|.+.++.++|...|++- + ..|... .-.-|..-+.+.+++++|.........-+|.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 567778888888888888887776542 1 122221 1112334456777777777766666554443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-08 Score=97.72 Aligned_cols=268 Identities=15% Similarity=0.127 Sum_probs=160.4
Q ss_pred CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-C--CCcHHHHHHHHHHHHhCCCHHHH
Q 005305 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-F--GDNVFVSCALIDMYSKCGSIEDA 285 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~--~~~~~~~~~Li~~y~~~g~~~~A 285 (703)
+.++++|.++|-+|.+... -+..+-.+|.+.+.+.|..+.|.++|..+.++. + ..-......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4678899999999887421 133345567788888999999999998888753 1 11234556778889999999999
Q ss_pred HHHHhhcCCCCcc---cHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhh----HHHHHHHHhccCCHHHHHHHHHHH
Q 005305 286 QGVFDEMSEKTTV---GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT----FSMIIRICTRLASLEHAKQAHAGL 358 (703)
Q Consensus 286 ~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~~~~~~ 358 (703)
+.+|..+.+.+.. ..-.|+..|.+..+|++|++.-+++...+-.+..+- |.-+........+++.|...+..+
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999998774433 456688899999999999999998887765444332 122222222233444444444444
Q ss_pred HHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 005305 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438 (703)
Q Consensus 359 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 438 (703)
.+.+. +.+..--.+...+...|+++.|.+.++...+.+..--..+...
T Consensus 207 lqa~~--------------------------------~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 207 LQADK--------------------------------KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred HhhCc--------------------------------cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 33221 1122222233455566666666666666665432222345555
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHH
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI-RGAPFKTTKNMWAALLTACR 512 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~a~~ 512 (703)
|..+|.+.|+.+++..++..+.+. .+....-..+.+.-....-.+.|...+ +.+..+|+...+..|+..-.
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 666666666666666666666541 233333333444433333344444433 34555666666666666543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=87.05 Aligned_cols=50 Identities=32% Similarity=0.680 Sum_probs=47.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 005305 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445 (703)
Q Consensus 396 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 445 (703)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-09 Score=105.05 Aligned_cols=197 Identities=17% Similarity=0.111 Sum_probs=163.4
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 442 (703)
....+..+...|.+.|++++|...|++... .+...|..+...|...|++++|.+.|++..+.. ..+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456777888999999999999999998743 346678888899999999999999999998753 2245677778888
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELG 520 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 520 (703)
+...|++++|.+.++...+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863222334566777888999999999999999874 3334 456788888999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
...+++.....|+++..+..++.++...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888888888999999999999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.8e-08 Score=102.40 Aligned_cols=409 Identities=14% Similarity=0.071 Sum_probs=262.5
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHH-
Q 005305 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA- 235 (703)
Q Consensus 160 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~- 235 (703)
.+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..|.-.|....|+.+.+.-......|+..+-.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888999999999999999999999998754 345679999999999999999999998876554446544433
Q ss_pred HHHHHHh-cCCChHHHHHHHHHHHHh--CC--CCcHHHHHHHHHHHHhC-----------CCHHHHHHHHhhcCCCCccc
Q 005305 236 TMIRASA-GLELISVGKQLHSCALKM--GF--GDNVFVSCALIDMYSKC-----------GSIEDAQGVFDEMSEKTTVG 299 (703)
Q Consensus 236 ~ll~a~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~~y~~~-----------g~~~~A~~~f~~m~~~~~~~ 299 (703)
..-+.|. +.+..++|..+-..++.. +. ...+..+-.+.-+|... ....++.+.+++..+.|...
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3334454 457777777777776662 21 11233444444444432 12345666666664432222
Q ss_pred HH---HHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 005305 300 WN---TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376 (703)
Q Consensus 300 ~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 376 (703)
++ -+.--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++..|..+.+.....- ..|-.....-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 22 2233467788999999999999887667777788877777888899999998888776531 1111111111122
Q ss_pred HHhcCCHHHHHHHhhhcC-------------------------------cCChh-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 005305 377 YSKWGRIEDARHVFDKML-------------------------------CKNVI-SWNALIAGYGNHGRGEEAVELFEQM 424 (703)
Q Consensus 377 y~k~g~~~~A~~~f~~m~-------------------------------~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m 424 (703)
-..-++.++|......+. ..+.. ++..+ .+... -+...+..-.. |
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccccc-c
Confidence 222344444433322220 01111 22222 11111 11111100000 1
Q ss_pred HHcCCC--cCH------HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-C
Q 005305 425 LLNGMR--PNH------VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-A 495 (703)
Q Consensus 425 ~~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m 495 (703)
...-+. |+. ..|......+.+.+..+++...+.+..+ ..+-....|.-....+...|.++||.+.|.. .
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 111122 232 2234455677888888999877776654 2334456677777888899999999998876 4
Q ss_pred CCCCC-HHHHHHHHHHHHHcCChhHHHH--HHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCce
Q 005305 496 PFKTT-KNMWAALLTACRVNGNLELGKF--AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPAC 572 (703)
Q Consensus 496 ~~~p~-~~~~~~ll~a~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~ 572 (703)
...|+ +.+..++...+.+.|+...|.. ....+++++|.++.+|..|+.++.+.|+.++|.+-|+...+-.- ..|-.
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~ 790 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVL 790 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCcc
Confidence 55675 5588899999999999888888 99999999999999999999999999999999999998775443 23433
Q ss_pred eEE
Q 005305 573 SWI 575 (703)
Q Consensus 573 s~~ 575 (703)
.|.
T Consensus 791 pFs 793 (799)
T KOG4162|consen 791 PFS 793 (799)
T ss_pred ccc
Confidence 443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-08 Score=99.23 Aligned_cols=281 Identities=15% Similarity=0.095 Sum_probs=176.0
Q ss_pred CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 005305 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 288 (703)
.|++.+|+++..+-.+.+-.| ...|..-..+.-..|+.+.+-+++.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888766554443 3446666677778899999999999888874467777888888889999999999888
Q ss_pred HhhcC---CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHh-------hHHHHHHHHhccCCHHHHHHHHHHH
Q 005305 289 FDEMS---EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF-------TFSMIIRICTRLASLEHAKQAHAGL 358 (703)
Q Consensus 289 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~ll~a~~~~~~~~~a~~~~~~~ 358 (703)
.++.. .+++.........|.+.|++.+.+.++..|.+.|+--|+. ++..++.-+...+..+.-++.++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 77654 4577788899999999999999999999999988765543 3444444443333333333333333
Q ss_pred HHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 005305 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438 (703)
Q Consensus 359 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 438 (703)
.+. .. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+- .
T Consensus 256 pr~-lr-------------------------------~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~ 299 (400)
T COG3071 256 PRK-LR-------------------------------NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----C 299 (400)
T ss_pred cHH-hh-------------------------------cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----H
Confidence 221 12 23333344445555555555555555555555555441 1
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCh
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTKNMWAALLTACRVNGNL 517 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~ll~a~~~~g~~ 517 (703)
.+-.+.+.++.+.-.+..+...+.++..| ..+.+|...|.+.+.+.+|.+.|+. +...|+...|.-+..++.+.|+.
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh
Confidence 22234455555555555554444333333 4455566666666666666666654 34456666666666666666666
Q ss_pred hHHHHHHHHHh
Q 005305 518 ELGKFAAEKLY 528 (703)
Q Consensus 518 ~~a~~~~~~~~ 528 (703)
++|.+..++.+
T Consensus 378 ~~A~~~r~e~L 388 (400)
T COG3071 378 EEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHH
Confidence 66666555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-11 Score=86.12 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=48.2
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc
Q 005305 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243 (703)
Q Consensus 194 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 243 (703)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-07 Score=97.16 Aligned_cols=432 Identities=16% Similarity=0.123 Sum_probs=266.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHH--HHHHHH--hCC
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR--VLLMHV--RCG 179 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~--Li~~y~--~~g 179 (703)
+.++|++++|...-..+...+ +.|...+..-+-+..+.+.+++|..+... .+. ..+++. +=.+|+ +.+
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHcc
Confidence 788899999999999998764 55667777777788899999998854443 221 112222 345665 679
Q ss_pred ChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 005305 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCAL 258 (703)
Q Consensus 180 ~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 258 (703)
..++|++.++.....|..+-..-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-+.. .+. .+.
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~~q 165 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----LLQ 165 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----HHH
Confidence 99999999996665555566666677889999999999999997765432 222222232222111 110 111
Q ss_pred HhCCCC--cHHHHHHHHHHHHhCCCHHHHHHHHhhc--------CCCCcc----------cHHHHHHHHHHcCCcHHHHH
Q 005305 259 KMGFGD--NVFVSCALIDMYSKCGSIEDAQGVFDEM--------SEKTTV----------GWNTIIAGYALHGYSEEALD 318 (703)
Q Consensus 259 ~~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~m--------~~~~~~----------~~~~li~~~~~~g~~~~A~~ 318 (703)
.....| +-..+......+...|++.+|+++++.. .+.|.- .--.|...+...|+.++|.+
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 111112 2233333556677889999999999876 221111 12234556778999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHH---HHHhccCCHHH--HH------------HHHHHHHHcCCCCchHHHHHHHhhHHhcC
Q 005305 319 LYYEMRDSGVKMDHFTFSMII---RICTRLASLEH--AK------------QAHAGLVRHGFGLDIVANSALVDFYSKWG 381 (703)
Q Consensus 319 l~~~m~~~g~~pd~~t~~~ll---~a~~~~~~~~~--a~------------~~~~~~~~~g~~~~~~~~~~Li~~y~k~g 381 (703)
++....... .+|........ .+...-.++.. .. .....+.+. -......-++++.+|. +
T Consensus 246 iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~t--n 321 (652)
T KOG2376|consen 246 IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALFT--N 321 (652)
T ss_pred HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHh--h
Confidence 999998875 44553322222 22222111111 11 111111110 1112334456666665 4
Q ss_pred CHHHHHHHhhhcCcCC-hhhHHHHHHH-HH-hcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHHHHH
Q 005305 382 RIEDARHVFDKMLCKN-VISWNALIAG-YG-NHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEIF 456 (703)
Q Consensus 382 ~~~~A~~~f~~m~~~~-~~~~~~li~~-~~-~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 456 (703)
..+.+.++....+... ...+.+++.. +. +...+.+|.+++...-+. .|.. +.....+......|+++.|.+++
T Consensus 322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5677777777775432 3334444433 32 223467788887776654 4444 34444455567889999999999
Q ss_pred H--------HhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCChhH
Q 005305 457 Q--------SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA--------PFKTT-KNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 457 ~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~a~~~~g~~~~ 519 (703)
. .+.+ .+..| .+..+++.+|.+.++-+-|..++.+. ..++. ..+|.-+..--.++|+.++
T Consensus 400 ~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 8 4443 33444 45567888999988777777666542 22222 2234444444467899999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 520 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
|...++++.+..|++....+.++.+|++. +.+.|..+-+.+
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999999999999999876 456666655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-06 Score=89.98 Aligned_cols=472 Identities=14% Similarity=0.116 Sum_probs=255.5
Q ss_pred hhhhhccccccCCCCcccchhhcccccCccCCCC---CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 005305 60 CLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKP---SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDA 135 (703)
Q Consensus 60 ~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p---~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 135 (703)
.+|-.-+....+.|.+..- ++.|+.....-| ....|...+. ..+.+-++-++.+|++-.+-. |.. -..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~t---R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---P~~--~ee 174 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRT---RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---PEA--REE 174 (835)
T ss_pred HHHHHHHHHHHhcchHHHH---HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC---HHH--HHH
Confidence 4566666666777888888 888886543311 2346999999 888899999999999987743 433 566
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhC------CCCCcchHHHHHHHHHhCCChH---HHHHHHccCCC--CC--cccHHHH
Q 005305 136 LISACIGLRSIREVKRVFSYMLSTG------FEPDLYMRNRVLLMHVRCGMMI---DARRLFDEMPE--RN--LVSCNMI 202 (703)
Q Consensus 136 ll~~~~~~~~~~~a~~l~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~~---~A~~~f~~m~~--~d--~~~~~~l 202 (703)
-+..+...+++++|.+.++.++... .+.+...|+-+.+..++.-+.- ....+++.+.. +| ...|++|
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 6777888999999999998887431 1334445555555555432221 22334444433 22 2356667
Q ss_pred HHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc---------------------------------------
Q 005305 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG--------------------------------------- 243 (703)
Q Consensus 203 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--------------------------------------- 243 (703)
.+-|.+.|.+++|.++|++....-.. ..-|..+..+|+.
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 77777777777776666655433111 1111111111111
Q ss_pred ---------------------------CCChHHHHHHHHHHHHhC-----CCCcHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 005305 244 ---------------------------LELISVGKQLHSCALKMG-----FGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291 (703)
Q Consensus 244 ---------------------------~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 291 (703)
.|+..+-...+.++++.- ...-...|..+...|-..|+++.|+.+|++
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 122333333444444321 011124566777777778888888888877
Q ss_pred cCCCCc-------ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCC----------CC-------CHhhHHHHHHHHhccCC
Q 005305 292 MSEKTT-------VGWNTIIAGYALHGYSEEALDLYYEMRDSGV----------KM-------DHFTFSMIIRICTRLAS 347 (703)
Q Consensus 292 m~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----------~p-------d~~t~~~ll~a~~~~~~ 347 (703)
..+-+- .+|-.-...=.+..+++.|+++.++....-- .| +...|+..++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 654221 2344444445566677777776665532110 01 11123333333444566
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC----cCChh-hHHHHHHHHHhc---CCHHHHHH
Q 005305 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML----CKNVI-SWNALIAGYGNH---GRGEEAVE 419 (703)
Q Consensus 348 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~~~~-~~~~li~~~~~~---g~~~~A~~ 419 (703)
++..+.+++.++...+... .+.-...-.+-...-++++.+++++-+ -|++. .||..+.-+.+. ...+.|..
T Consensus 493 festk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 7777777777777554422 222222222334455677777777652 34443 677766655442 24677888
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHH--HccCCHHHHHHHHHHhHhhcCCCCc--hHHHHHHHHHHHhc-------CChHHH
Q 005305 420 LFEQMLLNGMRPNHVTFLAVLSAC--SRSGLSERGWEIFQSMSRDHKIKPR--AMHYACMIELLGRE-------GLLDEA 488 (703)
Q Consensus 420 l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~-------g~~~~A 488 (703)
+|++.++ |..|...-+.-|+-|- -.-|....|..+++++.. ++++. ...|+..|.--+.. +-+++|
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 8888777 6666654443343332 234677777777777654 44443 23455444321111 223333
Q ss_pred HHHHHhCCCCCCHHHH---HHHHHHHHHcCChhHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhCCCh
Q 005305 489 FALIRGAPFKTTKNMW---AALLTACRVNGNLELGKFAAEKLYGME-PE-KLSNYVVLLNIYNSSGKL 551 (703)
Q Consensus 489 ~~~~~~m~~~p~~~~~---~~ll~a~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~y~~~g~~ 551 (703)
++. + ||..+- --....-.+.|..+.|+.++...-++- |. ++..|.+.=+.-.+.|+-
T Consensus 649 Ie~---L---p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 649 IES---L---PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHh---C---ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 322 1 332221 122223345667777777666555443 32 334455665566666663
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.3e-10 Score=118.68 Aligned_cols=265 Identities=16% Similarity=0.170 Sum_probs=193.6
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCC
Q 005305 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397 (703)
Q Consensus 318 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~ 397 (703)
..+-.|...|+.||.+||.++|.-|+..|+.+.|- +|..|.-...+.+..++++++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45678889999999999999999999999999999 9999988888888999999999999999988876 677
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
..+|+.|..+|.++|+... |+...+ -+..+...++..|....-..++..+.-..+.-||... .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8899999999999999754 333222 2223445566666666666666554333455566544 455
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005305 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG-NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 556 (703)
...-.|.++.++++...+|...........+.-+.... .+++-....+...+ .|+ +.+|..+...-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhhHHH
Confidence 56677888899999988875211111111344444333 33444444444445 565 7899999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHHcCcccCCCccCC
Q 005305 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLP 622 (703)
Q Consensus 557 ~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ 622 (703)
++..|+++|+...+..-|-.+ .|.... .-++.+++-|++.|+.|+..|...
T Consensus 226 ll~emke~gfpir~HyFwpLl--------~g~~~~-------q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLL--------LGINAA-------QVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred HHHHHHHcCCCcccccchhhh--------hcCccc-------hHHHHHHHHHHHhcCCCCcchhHH
Confidence 999999999988888777533 231111 225678889999999999987653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-07 Score=96.57 Aligned_cols=258 Identities=15% Similarity=0.070 Sum_probs=200.7
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh
Q 005305 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379 (703)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 379 (703)
...-..-+...+++.+.++++....+. .++....+..-|..+...|+...-..+=..+++. .+....+|-++.-.|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 333445566789999999999998875 3556666666666777777766665555556654 45567889999999999
Q ss_pred cCCHHHHHHHhhhcCcCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 005305 380 WGRIEDARHVFDKMLCKN---VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 456 (703)
.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. +.-...-+.-+..-|.+.++.+.|.++|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999875433 358999999999999999999999887663 1112233444555688899999999999
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP--------FKT-TKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 457 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
..... -.+.|+..++-+.-+.-..+.+.+|...|+... .++ -..+|+.|..+|++.+.+++|+..+++.
T Consensus 404 ~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 404 KQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 98864 233455566666666667788999988887531 122 3457889999999999999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
+.+.|.++.+|.+++-+|...|+++.|.+.|.+..
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999998875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.7e-08 Score=94.54 Aligned_cols=291 Identities=13% Similarity=0.037 Sum_probs=181.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005305 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186 (703)
Q Consensus 107 ~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 186 (703)
.|++..|.++..+-.+.+ .-....|..-..+.-+.|+.+.+-+...++.+..-.++..+.-+........|+.+.|+.
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 577777777777666555 222334455555556667777777777777665334445555566666666777777666
Q ss_pred HHccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 005305 187 LFDEM---PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263 (703)
Q Consensus 187 ~f~~m---~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 263 (703)
-.++. ..++...-.....+|.+.|++.+...+...|.+.|.--|+.. .+
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~----------- 226 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------AR----------- 226 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HH-----------
Confidence 55543 335566666667777777777777777777766665433220 00
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 005305 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340 (703)
Q Consensus 264 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 340 (703)
-...+++.+++-....+..+.-...+++.+. .++..-.+++.-+.+.|+.++|.++..+-.+.+..|+- ..+-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHH
Confidence 0112344444444433444444445555543 24555556666777777777777777777776655552 2223
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHH
Q 005305 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAV 418 (703)
Q Consensus 341 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~ 418 (703)
.+.+.++.+.-.+..+.-.+.. +.++..+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+..+|.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4455666666666555555532 2345788888888999999999999888763 578888988889999999999998
Q ss_pred HHHHHHHHcCCCcC
Q 005305 419 ELFEQMLLNGMRPN 432 (703)
Q Consensus 419 ~l~~~m~~~g~~p~ 432 (703)
+.+++....-.+|+
T Consensus 382 ~~r~e~L~~~~~~~ 395 (400)
T COG3071 382 QVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHhcCCC
Confidence 88888765433343
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.7e-08 Score=101.62 Aligned_cols=230 Identities=20% Similarity=0.187 Sum_probs=164.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHc-----CC-CCch-HHHHHHHhhHHhcCCHHHHHHHhhhcCc----------
Q 005305 333 FTFSMIIRICTRLASLEHAKQAHAGLVRH-----GF-GLDI-VANSALVDFYSKWGRIEDARHVFDKMLC---------- 395 (703)
Q Consensus 333 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~m~~---------- 395 (703)
.|...+...|...|+++.|..+++..++. |. .|.+ ...+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777788888888888887777653 21 1222 2234467788888888888888887721
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC-cCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcC--C
Q 005305 396 K-NVISWNALIAGYGNHGRGEEAVELFEQMLL-----NGMR-PNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHK--I 465 (703)
Q Consensus 396 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 465 (703)
| -..+++.|...|...|++++|...+++..+ .|.. |.. .-++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 234677777788888988888877776553 1222 233 3456666778899999999999887765333 2
Q ss_pred CCc----hHHHHHHHHHHHhcCChHHHHHHHHhCC-------C--CCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhC--
Q 005305 466 KPR----AMHYACMIELLGREGLLDEAFALIRGAP-------F--KTT-KNMWAALLTACRVNGNLELGKFAAEKLYG-- 529 (703)
Q Consensus 466 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~--~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-- 529 (703)
.++ ..+++.|...|-..|++++|++++++.- . .+. ...++.|..+|.+.++.++|.+.+.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 4678999999999999999999998641 1 222 34677888899999999988888777653
Q ss_pred --CC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 530 --ME---PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 530 --~~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.. |+-..+|..|+-+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23 4445678899999999999999999998875
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-06 Score=82.94 Aligned_cols=443 Identities=14% Similarity=0.082 Sum_probs=237.5
Q ss_pred HH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCC
Q 005305 102 EK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM 180 (703)
Q Consensus 102 i~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 180 (703)
+. +..+.++..|+.+++--...+ -.....+-.-+..++...|++++|...+..+.... .++..++..|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 45 677778888888877665443 12222233334445567788888888888777644 4555566556655556677
Q ss_pred hHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005305 181 MIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM 260 (703)
Q Consensus 181 ~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (703)
+.+|..+-...+. +...-..|...-.+-++-++-+.+-..+... ...-.++.+..-....+++|..++..++..
T Consensus 107 Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888777665542 2222222333334445544444443333221 111122222222233466677777666654
Q ss_pred CCCCcHHHHHH-HHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHH
Q 005305 261 GFGDNVFVSCA-LIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336 (703)
Q Consensus 261 g~~~~~~~~~~-Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 336 (703)
. |+-...|. +.-.|.|..-++-+.++++--.+ .+++.-|.......+.=...-|.+-.+++...+-. .+.+
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~--~~~f- 255 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ--EYPF- 255 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--cchh-
Confidence 2 33222222 23345666666666555543322 23344444444333322222233333333332211 1111
Q ss_pred HHHHHHh----ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcC
Q 005305 337 MIIRICT----RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412 (703)
Q Consensus 337 ~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 412 (703)
.-..|. --.+-+.|.+++--+.+. . +..--.|+-.|.+.+++++|..+..++....+.-|-.-...++..|
T Consensus 256 -~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 256 -IEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALG 330 (557)
T ss_pred -HHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhh
Confidence 111111 112334555555544442 1 2233456777889999999999888875544443322222333344
Q ss_pred C-------HHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCC
Q 005305 413 R-------GEEAVELFEQMLLNGMRPNHV-TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484 (703)
Q Consensus 413 ~-------~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 484 (703)
+ ..-|.+.|+-.-+.+..-|.+ ---++.+++.-...+++...++..+.. +-...|...+ .+..+++..|+
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgn 408 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGN 408 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcC
Confidence 3 344555555444444332321 122333444445567888888888876 5444455444 46788888999
Q ss_pred hHHHHHHHHhCCC--CCCHHHHHHHHHHH-HHcCChhHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 485 LDEAFALIRGAPF--KTTKNMWAALLTAC-RVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 485 ~~~A~~~~~~m~~--~p~~~~~~~ll~a~-~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
+.+|+++|-++.. -.|..+|.+++.-| .+.+..+.|+.++-+.- .|.+ ......+++-+.+++.+--|.+.|+.
T Consensus 409 y~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred hHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999877532 13677887777765 56677777776554321 2322 23344667778888888888888888
Q ss_pred HHhCCC
Q 005305 561 LRRKGL 566 (703)
Q Consensus 561 m~~~~~ 566 (703)
+...+.
T Consensus 487 lE~lDP 492 (557)
T KOG3785|consen 487 LEILDP 492 (557)
T ss_pred HHccCC
Confidence 775543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-08 Score=107.75 Aligned_cols=260 Identities=11% Similarity=-0.020 Sum_probs=182.3
Q ss_pred CcccHHHHHHHHHH-----cCCcHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHh---------ccCCHHHHHHHHHHHHH
Q 005305 296 TTVGWNTIIAGYAL-----HGYSEEALDLYYEMRDSGVKMDH-FTFSMIIRICT---------RLASLEHAKQAHAGLVR 360 (703)
Q Consensus 296 ~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~---------~~~~~~~a~~~~~~~~~ 360 (703)
+...|...+.+-.. .+..++|+.+|++..+. .|+. ..+..+..++. ..++.++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34445555554321 13357899999988875 4543 34444433332 23447899999999988
Q ss_pred cCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH-HH
Q 005305 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--K-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV-TF 436 (703)
Q Consensus 361 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 436 (703)
... .+...+..+..++...|++++|...|++... | +...|..+...|...|++++|+..+++..+. .|+.. .+
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 753 3677888888999999999999999998743 3 4567888889999999999999999999884 55542 33
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHH
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGLLDEAFALIRGA-PFKTTKN-MWAALLTACRV 513 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~ 513 (703)
..++..+...|++++|...++++.+. .+| ++..+..+...|...|+.++|.+.+.++ +..|+.. .++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34445566789999999999988762 234 4555777888899999999999999885 3345543 44555556666
Q ss_pred cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
.| +.+...++++++..-..+..+..+..+|+-.|+-+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 4777777777643322222333477788888988888877 7777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-08 Score=96.33 Aligned_cols=231 Identities=16% Similarity=0.127 Sum_probs=178.5
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhc
Q 005305 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380 (703)
Q Consensus 301 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 380 (703)
+.|..+|.+.|.+.+|.+.|+.-.+. .|-+.||..+-.+|.+..+++.|..++.+-++. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788899999999999998887776 566678888888899999999998888887775 444665566677777788
Q ss_pred CCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 005305 381 GRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457 (703)
Q Consensus 381 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 457 (703)
++.++|.++++...+ .|+.+.-++..+|--.++++-|+..++++.+.|+. +...|..+.-+|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888888888887743 35566666677888888888899999988888876 66777777778888888877777776
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 458 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
+... . .-+.++|-+ +|-.|.......||+..|.+.++-.+.-+|++..+
T Consensus 383 RAls-t------------------at~~~~aaD------------vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALS-T------------------ATQPGQAAD------------VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHh-h------------------ccCcchhhh------------hhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 6654 1 112222322 34444444556788999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 538 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
++.|+-+-.+.|++++|..+++.......
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 99999999999999999999998876543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.7e-08 Score=98.70 Aligned_cols=211 Identities=17% Similarity=0.107 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHHHcC-CCC--chHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHH
Q 005305 346 ASLEHAKQAHAGLVRHG-FGL--DIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVE 419 (703)
Q Consensus 346 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 419 (703)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++... .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666532 222 245677788889999999999999988743 456789999999999999999999
Q ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 005305 420 LFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP-- 496 (703)
Q Consensus 420 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 496 (703)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++..
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999987 46654 6777888888899999999999999876 34543322222233456788999999996532
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHh-------CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLY-------GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 497 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
..|+ .|.. .......|+...+. .++.+. ++.|+.+.+|..|+.+|.+.|++++|...+++..+.+
T Consensus 195 ~~~~--~~~~-~~~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKE--QWGW-NIVEFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCcc--ccHH-HHHHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2233 2321 22233455554432 333333 3445566789999999999999999999999988654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.01 E-value=8e-08 Score=94.04 Aligned_cols=191 Identities=13% Similarity=-0.004 Sum_probs=118.8
Q ss_pred cccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 005305 95 AGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173 (703)
Q Consensus 95 ~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 173 (703)
...|..+.. +...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+....+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 445666667 899999999999999988764 4456777788888888999999999999888764 344556667777
Q ss_pred HHHhCCChHHHHHHHccCCC-----CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChH
Q 005305 174 MHVRCGMMIDARRLFDEMPE-----RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248 (703)
Q Consensus 174 ~y~~~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 248 (703)
.|...|++++|.+.|++... .+...|..+...+...|++++|...|.+....... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 77777888888877776643 12234555556666666666666666665543211 2334444444445555555
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHh
Q 005305 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290 (703)
Q Consensus 249 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 290 (703)
+|...+..+.+. .+.+...+..+...+...|+.++|..+++
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555544443 12233333344444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-05 Score=82.39 Aligned_cols=426 Identities=14% Similarity=0.139 Sum_probs=268.0
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhC
Q 005305 131 STYDALISACIGLRSIREVKRVFSYMLST-GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209 (703)
Q Consensus 131 ~t~~~ll~~~~~~~~~~~a~~l~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 209 (703)
..|..-+.....++++..-+..|+..+.. .+.....+|...+......|-.+-+.++++....-++..-+..|..++..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 45666677777888888888888887764 23334567777788888888888888888888777777778888888889
Q ss_pred CChhHHHHHHHHhHHcC------CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCc--HHHHHHHHHHHHhC
Q 005305 210 GDYLEAFLLFLDLWEEF------SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF--GDN--VFVSCALIDMYSKC 279 (703)
Q Consensus 210 g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~Li~~y~~~ 279 (703)
+++++|-+.+...+... .+.+...|.-+....++..+.-...++ +.+++.|+ -+| ...|++|.+-|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 99998888887775421 233444566555555555443333322 22333332 223 46899999999999
Q ss_pred CCHHHHHHHHhhcCCC--CcccHHHHHHHHHHcC----------------C------cHHHHHHHHHHHHCCC-------
Q 005305 280 GSIEDAQGVFDEMSEK--TTVGWNTIIAGYALHG----------------Y------SEEALDLYYEMRDSGV------- 328 (703)
Q Consensus 280 g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g----------------~------~~~A~~l~~~m~~~g~------- 328 (703)
|.+++|..+|++.... .+.-++.+..+|++-. + .+-.+.-|+.+...+.
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999886543 3333444444444321 1 1122233333332210
Q ss_pred ----CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC------chHHHHHHHhhHHhcCCHHHHHHHhhhcCcCCh
Q 005305 329 ----KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL------DIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398 (703)
Q Consensus 329 ----~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~ 398 (703)
+-+..++..-.. ...|+..+-...+.++++. +.| -...|..+.+.|-..|+++.|+.+|++..+-+-
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 111122222211 1234566666777777763 222 235788899999999999999999999855332
Q ss_pred -------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------CCcC-H------HHHHHHHHHHHccCCHHHHHH
Q 005305 399 -------ISWNALIAGYGNHGRGEEAVELFEQMLLNG----------MRPN-H------VTFLAVLSACSRSGLSERGWE 454 (703)
Q Consensus 399 -------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------~~p~-~------~t~~~ll~a~~~~g~~~~a~~ 454 (703)
..|-.-...=.++.+++.|+++.+...... -.|- . ..|...+.---..|-++..+.
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 244444455567888999999888765321 1111 1 123333444445577788888
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCC--CCCHH-HHHHHHHHHH-H--cCChhHHHHHHHHH
Q 005305 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APF--KTTKN-MWAALLTACR-V--NGNLELGKFAAEKL 527 (703)
Q Consensus 455 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~--~p~~~-~~~~ll~a~~-~--~g~~~~a~~~~~~~ 527 (703)
+++++..-.-..|.... ...-.+....-++++.+.+++ ++. -|++. .|++.|.-+. + ....+.|+.+|+++
T Consensus 499 vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 88888774333444322 223345567788999999987 332 45554 8888887663 2 24789999999999
Q ss_pred hCCCCCCc--chHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 528 YGMEPEKL--SNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 528 ~~~~p~~~--~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
++.-|..- ..|...+..--+-|.-..|.+++++..
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99877421 224344444455688888888888754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.1e-08 Score=107.09 Aligned_cols=210 Identities=15% Similarity=0.038 Sum_probs=129.1
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh---------ccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCC
Q 005305 110 YREALELFEILEFEGGFDVGSSTYDALISACI---------GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM 180 (703)
Q Consensus 110 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~---------~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 180 (703)
.++|+.+|++..+.. +-+...|..+..++. ..+++++|...++.+++.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 567888888877654 223344444433332 2234677777777777664 4455666677777777788
Q ss_pred hHHHHHHHccCCC--C-CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 005305 181 MIDARRLFDEMPE--R-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257 (703)
Q Consensus 181 ~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 257 (703)
+++|...|++..+ | +...|..+...+...|++++|+..|++..+....+ ...+..++..+...|++++|...+..+
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8888888877554 3 34466677777777888888888888776653321 112223333445567777777777776
Q ss_pred HHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---cccHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT---TVGWNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 258 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
.+...+.++..+..+...|...|+.++|...+.++...+ ...++.+...|.+.| ++|...++.+.+
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 655423345556667777777777777777777765432 233455555556555 366666666544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.2e-06 Score=81.91 Aligned_cols=269 Identities=13% Similarity=0.019 Sum_probs=157.5
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHH---HHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHH
Q 005305 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI---IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337 (703)
Q Consensus 261 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 337 (703)
-++.|+....++.+.|...|+.++|...|++...-|+.+..+| ..-+.+.|+.+..-.+...+.... +-....|-.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 3566777777888888888888888888877654444333222 122345667666666665554421 111112222
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--c-CChhhHHHHHHHHHhcCCH
Q 005305 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--C-KNVISWNALIAGYGNHGRG 414 (703)
Q Consensus 338 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~ 414 (703)
-+...-...+++.|..+-+..++.... +...+-.-...+...|+.++|.-.|+... . -+..+|.-|+..|...|.+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 222223445566666666665554321 23333333345556677777777777653 2 3667777777777777777
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHH-HHHHc-cCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHHH
Q 005305 415 EEAVELFEQMLLNGMRPNHVTFLAVL-SACSR-SGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFAL 491 (703)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 491 (703)
.+|+.+-++.... +.-+..+++.+. ..|.- ..--++|..+++...+ +.|+ ....+.+..++.+.|..+++..+
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 7777766655442 222334444331 22222 2234667777666543 4454 33445566667777777777777
Q ss_pred HHh-CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 492 IRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 492 ~~~-m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
+++ +...||....+.|....+..+.+++|...+..++.++|++-
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 776 44466777777777777777777777777777777777753
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-06 Score=88.02 Aligned_cols=272 Identities=14% Similarity=0.059 Sum_probs=134.5
Q ss_pred HHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHH
Q 005305 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285 (703)
Q Consensus 206 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 285 (703)
+...+++.+.+++++...+.. ++....+..-|..+...|+..+-.-+-..+++. .|....+|-++.-.|.-.|+.++|
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHH
Confidence 334455555555555544331 122222333333444444444333333333332 234444555555555555555555
Q ss_pred HHHHhhcCCCC---cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 005305 286 QGVFDEMSEKT---TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362 (703)
Q Consensus 286 ~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 362 (703)
++.|.....-| ...|-.....|+-.|..++|+..+...-+. ++-....+--+---|.+.++++.|.+.|.++....
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 55554433221 224555555555555555555544443321 00001111111222334444444444444444331
Q ss_pred CCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCc-CHHHH
Q 005305 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN----G-MRP-NHVTF 436 (703)
Q Consensus 363 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p-~~~t~ 436 (703)
+.|+.+.+-+.-++.. .+.+.+|..+|+..+.. + -.| -..++
T Consensus 411 -P~Dplv~~Elgvvay~-------------------------------~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~ 458 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYT-------------------------------YEEYPEALKYFQKALEVIKSVLNEKIFWEPTL 458 (611)
T ss_pred -CCcchhhhhhhheeeh-------------------------------HhhhHHHHHHHHHHHHHhhhccccccchhHHH
Confidence 2234444444433333 44455555555544420 0 011 33456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHHc
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTKNMWAALLTACRVN 514 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~ll~a~~~~ 514 (703)
+.|..+|.+.+.+++|...|+.... -.+.+..++.++.-.|...|+++.|.+.|.+ +..+||..+-..++.-+...
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 7777777777888888877777765 3455677777777777788888888888776 45677777666666655443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-06 Score=89.63 Aligned_cols=296 Identities=16% Similarity=0.146 Sum_probs=158.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCC----
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG---- 179 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g---- 179 (703)
+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.+ +.|..-|..|..+..-..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 56778888888888775443 33344555566677778888888888888888875 334444455555442221
Q ss_pred -ChHHHHHHHccCCCCC--cccHHHHHHHHHhCCChh-HHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 005305 180 -MMIDARRLFDEMPERN--LVSCNMIIAGMIDSGDYL-EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255 (703)
Q Consensus 180 -~~~~A~~~f~~m~~~d--~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 255 (703)
..+....+++++.... ..+.-.+.-.+.....+. .+...+..+..+|+++ +|+.+-..+......+-..++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 3444455555543311 111111111111111121 2233344444555432 23333322322221111111111
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh-cCCCCcccH--HHHHHHHHHcCCcHHHHHHHHHHHHCCCCCC-
Q 005305 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE-MSEKTTVGW--NTIIAGYALHGYSEEALDLYYEMRDSGVKMD- 331 (703)
Q Consensus 256 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-m~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd- 331 (703)
..... ...++.+.... .. -..|....| .-+...|-..|++++|++..++..+. .|+
T Consensus 168 ~~~~~---------------l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 168 EYVNS---------------LESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred HHHHh---------------hcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 11110 00000000000 00 011222234 44556677788888888888877775 454
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCCh----------hhH
Q 005305 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV----------ISW 401 (703)
Q Consensus 332 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~----------~~~ 401 (703)
...|..-...+-+.|++.+|...++.+...... |.++-+-.+..+.++|++++|.+++.....++. ..|
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 445666667777888888888888888776533 677777778888888888888888777654431 123
Q ss_pred H--HHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 402 N--ALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 402 ~--~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
- ....+|.+.|++..|++-|....+
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 235677888888888776655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-07 Score=97.47 Aligned_cols=161 Identities=19% Similarity=0.238 Sum_probs=83.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHh-----CC-CCcH-HHHHHHHHHHHhCCCHHHHHHHHhhcCC-------CC--
Q 005305 233 TFATMIRASAGLELISVGKQLHSCALKM-----GF-GDNV-FVSCALIDMYSKCGSIEDAQGVFDEMSE-------KT-- 296 (703)
Q Consensus 233 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------~~-- 296 (703)
|+..+...|...|+++.|.+++...++. |. .+.+ ...+.+..+|...+++++|..+|+++.. ++
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 5555666777777777777777766554 10 1222 2233455666667777776666665532 11
Q ss_pred --cccHHHHHHHHHHcCCcHHHHHHHHHHHH-----CCCC-CCHh-hHHHHHHHHhccCCHHHHHHHHHHHHHc---CCC
Q 005305 297 --TVGWNTIIAGYALHGYSEEALDLYYEMRD-----SGVK-MDHF-TFSMIIRICTRLASLEHAKQAHAGLVRH---GFG 364 (703)
Q Consensus 297 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~---g~~ 364 (703)
..+++.|...|.+.|++++|...+++..+ .|.. |... -++.+...|...+.++++..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 22455555666777777666665555432 1111 1111 2344444555566666666665554431 011
Q ss_pred Cc----hHHHHHHHhhHHhcCCHHHHHHHhhhc
Q 005305 365 LD----IVANSALVDFYSKWGRIEDARHVFDKM 393 (703)
Q Consensus 365 ~~----~~~~~~Li~~y~k~g~~~~A~~~f~~m 393 (703)
++ ..+++.|...|.+.|++++|+++|++.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 11 234455555555555555555555544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-06 Score=88.23 Aligned_cols=80 Identities=10% Similarity=-0.146 Sum_probs=59.8
Q ss_pred cccccCCCCcccchhhcccccCccCCCCC-cccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhc
Q 005305 66 LKPRPKPNKIYTEELKESSLPDTQMKKPS-AGICSQIEK-LVLNKRYREALELFEILEFEGGFDVG-SSTYDALISACIG 142 (703)
Q Consensus 66 i~~y~k~~~~~~aa~~~~~f~~~~~~~p~-~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~ 142 (703)
=+-|.+.+.+++| .+.+....+..|| .+-|...-+ |...|++++..+.=....+. .|+ .-.+..-.+++-.
T Consensus 122 GN~~f~~kkY~eA---IkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 122 GNKFFRNKKYDEA---IKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhcccHHHH---HHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHHHHHHHHHHHHHh
Confidence 3456666999999 9999998888888 666777777 99999999999887777764 454 3345555566667
Q ss_pred cCChHHHHH
Q 005305 143 LRSIREVKR 151 (703)
Q Consensus 143 ~~~~~~a~~ 151 (703)
.|++.++..
T Consensus 196 lg~~~eal~ 204 (606)
T KOG0547|consen 196 LGKFDEALF 204 (606)
T ss_pred hccHHHHHH
Confidence 777776653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-06 Score=81.74 Aligned_cols=405 Identities=13% Similarity=0.065 Sum_probs=250.7
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChh
Q 005305 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYL 213 (703)
Q Consensus 137 l~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~ 213 (703)
+.-+....++..|..+++.-...+-+....+---+...|.+.|++++|..++..+.+ ++...|-.|.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 344556678888888888776544333333444455777889999999999886654 56667777777777788888
Q ss_pred HHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 005305 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293 (703)
Q Consensus 214 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 293 (703)
+|..+-....+ ++-.-..++...-+.++-.+-.++|..+...- .-.-+|.++.-..-.+.+|++++.++.
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877554321 33344455566667788888888887765432 233445555444556899999999987
Q ss_pred CC--CcccHHH-HHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCCCchH
Q 005305 294 EK--TTVGWNT-IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR--LASLEHAKQAHAGLVRHGFGLDIV 368 (703)
Q Consensus 294 ~~--~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~ 368 (703)
.. +-...|. |.-+|.+..-++-+.+++.--.+. -||+ |+..=+.+|.. .=+-..+.+-...+.+.+-..-+
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~- 254 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP- 254 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-
Confidence 53 3444454 334677888888888888777664 4443 34444444432 22222233333333333211111
Q ss_pred HHHHHHhhHHhc-----CCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005305 369 ANSALVDFYSKW-----GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443 (703)
Q Consensus 369 ~~~~Li~~y~k~-----g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 443 (703)
.+.-.++. ..-+.|.+++-.+.+.=+..--.++--|.++++..+|..+.+++.- ..|-......+..+-
T Consensus 255 ----f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 ----FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAA 328 (557)
T ss_pred ----hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHH
Confidence 11112221 2235677766555433333444466678899999999999877642 355555554444332
Q ss_pred H-----ccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC
Q 005305 444 S-----RSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIRGAPF--KTTKNMWAALLTACRVNG 515 (703)
Q Consensus 444 ~-----~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a~~~~g 515 (703)
. ....+.-|.+.|+..-. .+..-| ...-.++...+.-.-++++.+-.++.+.. ..|...--.+..|....|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGE-SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhc
Confidence 1 12245667777775543 333322 23344566666666788888888776542 223333345788999999
Q ss_pred ChhHHHHHHHHHhCCCCCCcchH-HHHHHHHHhCCChHHHHHHHHHHH
Q 005305 516 NLELGKFAAEKLYGMEPEKLSNY-VVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~~~~~-~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
++.+|++++-++.+.+-.|-..| ..|+.+|.+.|+.+-|++++-++.
T Consensus 408 ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 99999999999887774444555 467899999999999998875543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-06 Score=88.23 Aligned_cols=231 Identities=13% Similarity=-0.002 Sum_probs=144.2
Q ss_pred CCcHHHHHHHHHHHHCC-CCCC--HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHH
Q 005305 311 GYSEEALDLYYEMRDSG-VKMD--HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387 (703)
Q Consensus 311 g~~~~A~~l~~~m~~~g-~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 387 (703)
+..+.++.-+.++.... ..|+ ...|...-..+...|+.+.|...+..+++... .+..+++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 34555566665555431 1222 12344445556667777777777777776542 35677888888888888888888
Q ss_pred HHhhhcCc--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcC
Q 005305 388 HVFDKMLC--K-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464 (703)
Q Consensus 388 ~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 464 (703)
..|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88887743 3 4567777888888889999999999888874 55543222222234456778899888876544 2
Q ss_pred CCCchHHHHHHHHHHHhcCChHHH--HHHHHh-CCC----CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCC-CCc
Q 005305 465 IKPRAMHYACMIELLGREGLLDEA--FALIRG-APF----KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEP-EKL 535 (703)
Q Consensus 465 ~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~-m~~----~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p-~~~ 535 (703)
..|+... ..++.. ..|++.++ .+.+.+ ... .| ....|..+...+...|+.++|...++++++.+| +.+
T Consensus 195 ~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 2333222 233333 34444333 333322 111 11 235788899999999999999999999999987 545
Q ss_pred chHHHHHHHHHhCC
Q 005305 536 SNYVVLLNIYNSSG 549 (703)
Q Consensus 536 ~~~~~l~~~y~~~g 549 (703)
.+-..++......+
T Consensus 272 e~~~~~~e~~~~~~ 285 (296)
T PRK11189 272 EHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555544433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-05 Score=80.12 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 005305 472 YACMIELLGREGLLDEAFALIRGA-PFKTTKN-MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549 (703)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 549 (703)
+-.++..|-+.|+++.|+..++.. .-.|+.+ .|.+-...+...|+++.|...++++.+++-.|...-.--+.-..++.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcc
Confidence 345667777888888888888764 3345543 34444466777888888888888888888665444335556667888
Q ss_pred ChHHHHHHHHHHHhCCC
Q 005305 550 KLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 550 ~~~~A~~~~~~m~~~~~ 566 (703)
+.++|.++.....+.|.
T Consensus 454 ~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccHHHHHHHHHhhhccc
Confidence 88888888888776664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.1e-06 Score=89.23 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=118.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 476 (703)
....|+.+..+-.+.|...+|++-|-+. -|...|.-++.++.+.|.+++-.+++....+ ..-+|..++ .||
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id~--eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYIDS--ELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccchH--HHH
Confidence 3457999999999999999998877542 2667899999999999999999999887766 566677665 899
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005305 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 556 (703)
-+|++.+++.|-++++. -||..-...+.+-|...|.++.|+-++.. .+.|.-|+..+...|.++.|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888874 47888888899999999999999888763 5678888888888898888876
Q ss_pred HHHHH
Q 005305 557 VIRTL 561 (703)
Q Consensus 557 ~~~~m 561 (703)
--++.
T Consensus 1242 ~aRKA 1246 (1666)
T KOG0985|consen 1242 AARKA 1246 (1666)
T ss_pred Hhhhc
Confidence 55443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.3e-05 Score=81.29 Aligned_cols=428 Identities=13% Similarity=0.083 Sum_probs=252.5
Q ss_pred cccccCccCCCCCcccHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005305 82 ESSLPDTQMKKPSAGICSQIEK--LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159 (703)
Q Consensus 82 ~~~f~~~~~~~p~~~~~~~li~--~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~ 159 (703)
.++.+.+..+.|...---+|.+ +...|+.++|.+..+...+.+ .-+.+.|..+--.+....++++|.+.+..+.+.
T Consensus 27 LK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 27 LKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred HHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 3333333334444444445555 667788888888777766644 345566776666666777788888888888776
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcC-CCCChhhHH
Q 005305 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF-SDCGSRTFA 235 (703)
Q Consensus 160 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~ 235 (703)
+ +.|..++.-|.-.-+..|+++.....-.+..+ ..-..|..+..++--.|+...|..+.++..+.. -.|+...+.
T Consensus 105 ~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 105 E-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred C-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 5 44555665555555555666555444333332 345678888888888899999999988887654 245555444
Q ss_pred HHH------HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC--CcccHHHHHH-H
Q 005305 236 TMI------RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK--TTVGWNTIIA-G 306 (703)
Q Consensus 236 ~ll------~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~-~ 306 (703)
-.. ......|.++.+.+.+...... +......--.-.+.+.+.+++++|..++..+..+ |...|+-... +
T Consensus 184 ~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 184 HSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHH
Confidence 322 2345567777776655443322 2222334445567788889999999999988764 4444544433 3
Q ss_pred HHHcCCcHHHH-HHHHHHHHC---CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCC
Q 005305 307 YALHGYSEEAL-DLYYEMRDS---GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382 (703)
Q Consensus 307 ~~~~g~~~~A~-~l~~~m~~~---g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 382 (703)
+.+--+.-+++ .+|....+. ...|-.... +......-.+....++...++.|+++ ++..+...|-.-..
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----svl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k 335 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEKYPRHECPRRLPL----SVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEK 335 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCcccccchhccH----HHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhH
Confidence 32333334444 555555432 111111111 11111222344455566666677653 34444444433221
Q ss_pred HHHHH----HHhhhc--------------CcCChhhHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHH
Q 005305 383 IEDAR----HVFDKM--------------LCKNVISWNA--LIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLS 441 (703)
Q Consensus 383 ~~~A~----~~f~~m--------------~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 441 (703)
.+--+ .+...+ ..|....|+. ++..|-..|+++.|+...+..+.. .|+. .-|..=..
T Consensus 336 ~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaR 413 (700)
T KOG1156|consen 336 VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKAR 413 (700)
T ss_pred hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHH
Confidence 11111 111111 1345556665 567788899999999999998874 7776 34444457
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CH--------HHHHHH--HHH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT-TK--------NMWAAL--LTA 510 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~--------~~~~~l--l~a 510 (703)
.+.+.|++++|..++++..+ --.||...-.-.+.-..|+.+.++|.++.....-.. +. -+|-.+ ..+
T Consensus 414 I~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~a 491 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEA 491 (700)
T ss_pred HHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHH
Confidence 78999999999999998866 234555544466677779999999998865532111 11 244333 245
Q ss_pred HHHcCChhHHHHHH
Q 005305 511 CRVNGNLELGKFAA 524 (703)
Q Consensus 511 ~~~~g~~~~a~~~~ 524 (703)
|.+.|++.+|..-+
T Consensus 492 y~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 492 YLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777776543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.5e-07 Score=82.83 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=136.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 479 (703)
...+.-+|.+.|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+ --+.+-.+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 444667889999999999999998884 6665 7888888889999999999999998876 2334567788888889
Q ss_pred HhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHH
Q 005305 480 GREGLLDEAFALIRGAPFKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 555 (703)
|..|++++|...|++.-..|+ ..+|..+.....+.|+.+.|+..+++.++.+|+.+.+...+.+...+.|++-+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999998644443 3478887777789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 005305 556 EVIRTLRRKGL 566 (703)
Q Consensus 556 ~~~~~m~~~~~ 566 (703)
..++....++.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99998876654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-05 Score=74.76 Aligned_cols=384 Identities=13% Similarity=0.022 Sum_probs=236.6
Q ss_pred chHHHHHHHHHhCCChHHHHHHHccCCCCCccc-HHHHHHHHHhCC-ChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc
Q 005305 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS-CNMIIAGMIDSG-DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243 (703)
Q Consensus 166 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~-~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 243 (703)
..--..+..|-..++-+.|.....+.+..-... -|.|+.-+-+.| +-.++.--+.+....-+ ..+ ..|.+..+
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~aL-~~i~~ll~ 172 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MAL-QVIEALLE 172 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hHH-HHHHHHHH
Confidence 344557788888899999999998888643333 344444333333 22233322333322210 000 01111111
Q ss_pred CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC--CCHHHHHHHHhhcC-----CCCcccHHHHHHHHHHcCCcHHH
Q 005305 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC--GSIEDAQGVFDEMS-----EKTTVGWNTIIAGYALHGYSEEA 316 (703)
Q Consensus 244 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A 316 (703)
.+ +..+++.-..|-+...++........+.+|+.+ ++...|...|--.. ..|+.....+...+...|+.++|
T Consensus 173 l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a 251 (564)
T KOG1174|consen 173 LG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQA 251 (564)
T ss_pred Hh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHH
Confidence 00 000111111122223344444444445555544 44444444443332 23666788889999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHH-HHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc
Q 005305 317 LDLYYEMRDSGVKMDHFTFSM-IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395 (703)
Q Consensus 317 ~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 395 (703)
...|++.+.. .|+..+--- -.-.+...|+.+....+..++....- -...-|..-........+.+.|..+-++.++
T Consensus 252 ~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~ 328 (564)
T KOG1174|consen 252 EDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCID 328 (564)
T ss_pred HHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 9999987754 444332111 11123566777777777666654320 1111121122223345678888888777755
Q ss_pred CChhhHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHH
Q 005305 396 KNVISWNAL---IAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471 (703)
Q Consensus 396 ~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 471 (703)
-|.....++ ...+.+.|+.++|.-.|+..+. +.|.. ..|..++.+|.-.|...+|...-+...+ -++.+..+
T Consensus 329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~ 404 (564)
T KOG1174|consen 329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARS 404 (564)
T ss_pred cCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhh
Confidence 444333333 4577888999999999999887 56654 8999999999999999999888776665 34445555
Q ss_pred HHHHH-HHHH-hcCChHHHHHHHHh-CCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 005305 472 YACMI-ELLG-REGLLDEAFALIRG-APFKTTKN-MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 472 ~~~li-~~~~-~~g~~~~A~~~~~~-m~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 547 (703)
.+.+. +.+. ...--++|.+++++ +..+|+-. ..+.+...|...|..+.+..++++.+...|+ ...++.|++++..
T Consensus 405 LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A 483 (564)
T KOG1174|consen 405 LTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRA 483 (564)
T ss_pred hhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHH
Confidence 44442 2222 22334789999987 56788754 6677788899999999999999999999998 4789999999999
Q ss_pred CCChHHHHHHHHHHHh
Q 005305 548 SGKLKEAAEVIRTLRR 563 (703)
Q Consensus 548 ~g~~~~A~~~~~~m~~ 563 (703)
.+.+++|.+.+....+
T Consensus 484 ~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 484 QNEPQKAMEYYYKALR 499 (564)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 9999999999987764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-07 Score=87.94 Aligned_cols=216 Identities=14% Similarity=-0.002 Sum_probs=114.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 183 (703)
|.+.|.+.+|.+.|+..... .|-..||..|-++|-+..++..|..++...+.. ++.|+.........+-..++.++
T Consensus 233 ylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHH
Confidence 66666666666666665553 244555666666666666666666666655543 23344333444455555566666
Q ss_pred HHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005305 184 ARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM 260 (703)
Q Consensus 184 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (703)
|.++++...+ -|+.+...+..+|.-.++++-|+..|+++++.|+. +...|..+.-.|.-.++++.+..-|..+...
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 6666655543 23444444555555566666666666666666554 4555555555555555555555555554443
Q ss_pred CCCCc--HHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---cccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 261 GFGDN--VFVSCALIDMYSKCGSIEDAQGVFDEMSEKT---TVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 261 g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
--.|+ ..+|-.|.......|++..|.+.|+-....| ..++|.|.-.-.+.|+.++|..++....
T Consensus 388 at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 22222 2344444444445555555555555443322 2344444444455555555555555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-05 Score=80.02 Aligned_cols=352 Identities=16% Similarity=0.150 Sum_probs=172.7
Q ss_pred HHHHHHHHhCCChHHHHHHHccC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCC
Q 005305 169 NRVLLMHVRCGMMIDARRLFDEM--PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246 (703)
Q Consensus 169 ~~Li~~y~~~g~~~~A~~~f~~m--~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 246 (703)
-+-|..|.+.|...+|.+.-..= ...|......+..++.+..-+++|-++|+.+.. +...+..+-+-..
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgda 689 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccH
Confidence 45678888998888877654321 123444444455555555556666666655532 1112222222222
Q ss_pred hHHHHHHHHHHHHhCCCCcHHH-HHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 247 ISVGKQLHSCALKMGFGDNVFV-SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
+-+|.++-+. .++..++. -.+...-+...|+++.|..-|-+... .--.|.+-.....+.+|+.+++.++.
T Consensus 690 f~kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqd 760 (1636)
T KOG3616|consen 690 FGKAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQD 760 (1636)
T ss_pred HHHHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhh
Confidence 3333332221 12222111 11222333344555555444433211 11123333444555555555555544
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcC--ChhhHHH
Q 005305 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK--NVISWNA 403 (703)
Q Consensus 326 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~--~~~~~~~ 403 (703)
.. .-..-|..+...|+..|+++.|+++|-.. ..++--|+||.+.|++++|.++-.+...| .+.+|-+
T Consensus 761 qk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yia 829 (1636)
T KOG3616|consen 761 QK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIA 829 (1636)
T ss_pred hc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHH
Confidence 32 12223444555555555555555554322 12334455555555555555555444322 2223333
Q ss_pred H--------------------------HHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHHHH
Q 005305 404 L--------------------------IAGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEI 455 (703)
Q Consensus 404 l--------------------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 455 (703)
- |..|-++|..++.+++..+- .|+. .|-..+..-+-..|++..|..-
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 3 33444444444444443332 2332 3445555566667777777766
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC----CCCHHHHHHH------HHHHHHcCChhHHHHH--
Q 005305 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF----KTTKNMWAAL------LTACRVNGNLELGKFA-- 523 (703)
Q Consensus 456 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~l------l~a~~~~g~~~~a~~~-- 523 (703)
|-+.. -|.+-+++|-..+.+++|.++-+.-+- +.-...|.-- .....++|-.+.|...
T Consensus 905 flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~ 974 (1636)
T KOG3616|consen 905 FLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAA 974 (1636)
T ss_pred HHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhh
Confidence 64432 356778899999999999988765331 1112344322 2223455655555432
Q ss_pred ----HHHHh-----CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 524 ----AEKLY-----GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 524 ----~~~~~-----~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
|+-++ .....-+....-++.-+-..|++++|.+-+-+..+.
T Consensus 975 d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 975 DNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred cccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 11111 111222456777888888999999998777665543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00021 Score=76.91 Aligned_cols=428 Identities=15% Similarity=0.060 Sum_probs=266.0
Q ss_pred cHHHHHH--HHhcCChhHHHHHHHHH----HHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHH
Q 005305 97 ICSQIEK--LVLNKRYREALELFEIL----EFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170 (703)
Q Consensus 97 ~~~~li~--~~~~g~~~~A~~l~~~m----~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 170 (703)
..-.+|. ++-..+.+++.-..-.+ .... +.-|...|-.+.-+....|+++.+-+.|++....- -.....|+.
T Consensus 285 ~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~-~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~ 362 (799)
T KOG4162|consen 285 ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK-FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQ 362 (799)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHH
Confidence 3444555 66666777776544333 3333 66788999999999999999999999999987643 334567888
Q ss_pred HHHHHHhCCChHHHHHHHccCCC----CCcccHHHHH-HHHHh-CCChhHHHHHHHHhHHc--C----CCCChhhHHHHH
Q 005305 171 VLLMHVRCGMMIDARRLFDEMPE----RNLVSCNMII-AGMID-SGDYLEAFLLFLDLWEE--F----SDCGSRTFATMI 238 (703)
Q Consensus 171 Li~~y~~~g~~~~A~~~f~~m~~----~d~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~--g----~~p~~~t~~~ll 238 (703)
+-..|..+|.-..|..+.++-.. |+..+--.|+ ..|.+ -+..++++++-.+.... + +.|- .|..+.
T Consensus 363 ~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lG 440 (799)
T KOG4162|consen 363 LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLG 440 (799)
T ss_pred HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHH
Confidence 99999999999999999886543 3323333333 23333 36777887777766551 1 2332 333333
Q ss_pred HHHhc----CCC-------hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC----CCCcccHHHH
Q 005305 239 RASAG----LEL-------ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS----EKTTVGWNTI 303 (703)
Q Consensus 239 ~a~~~----~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~l 303 (703)
-+|.. ... -.++.+.++.+++.+ +.|+.+..-+.--|+..++++.|.+...+.. ..+...|..+
T Consensus 441 i~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLL 519 (799)
T KOG4162|consen 441 IAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLL 519 (799)
T ss_pred HHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 33321 111 234566677777665 3444444445566788899999988877654 3477899999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCCHHHHHHH-------HH----------HHHH----c
Q 005305 304 IAGYALHGYSEEALDLYYEMRDSGVKMD-HFTFSMIIRICTRLASLEHAKQA-------HA----------GLVR----H 361 (703)
Q Consensus 304 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~-------~~----------~~~~----~ 361 (703)
.-.+...+++.+|+.+.+...+. .|+ ..-...-+..-...++.+++... |+ +... .
T Consensus 520 ALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~ 597 (799)
T KOG4162|consen 520 ALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKA 597 (799)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhc
Confidence 99999999999999998876553 111 10000001111112222222111 11 1111 1
Q ss_pred CCC-------CchHHHHHHHhhHH---hcCCHHHHHHHhhhcCcCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005305 362 GFG-------LDIVANSALVDFYS---KWGRIEDARHVFDKMLCKN------VISWNALIAGYGNHGRGEEAVELFEQML 425 (703)
Q Consensus 362 g~~-------~~~~~~~~Li~~y~---k~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~ 425 (703)
|.. ..+.++..+..... +.-..+.....+...+.|+ ...|......+.+.++.++|...+.+..
T Consensus 598 ~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred ccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 110 11222222222111 1111111112222223333 2346666778888999999988887776
Q ss_pred HcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-
Q 005305 426 LNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFA--LIRGA-PFKT- 499 (703)
Q Consensus 426 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p- 499 (703)
. +.|-. ..|......+...|..++|.+.|..... +.|+ +....++..++.+.|+..-|.. +...+ ...|
T Consensus 678 ~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 678 K--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred h--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 5 34433 4444444566778899999999987754 4554 5678899999999998877777 66654 5555
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
+...|-.|.....+.|+.+.|-..|...+++++.+|.
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 5679999999999999999999999999999988764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.6e-05 Score=73.50 Aligned_cols=195 Identities=13% Similarity=0.090 Sum_probs=102.1
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhc---CcCChhhHHHHHHHHHhcCCHHHHH
Q 005305 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM---LCKNVISWNALIAGYGNHGRGEEAV 418 (703)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~ 418 (703)
+...|+...+......+++.. +.|...+..-..+|...|++..|..-+... ...|....--+-..+-.-|+.+.++
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 344556666666666665532 235566666666777777777776555443 3344555555555666677777777
Q ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CC
Q 005305 419 ELFEQMLLNGMRPNHVT-FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-AP 496 (703)
Q Consensus 419 ~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~ 496 (703)
...++-++ +.||... |.. | ..+.+..+.++.|.+ ..+.+++.++++-.+. |.
T Consensus 244 ~~iRECLK--ldpdHK~Cf~~----Y---KklkKv~K~les~e~-----------------~ie~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 244 KEIRECLK--LDPDHKLCFPF----Y---KKLKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLK 297 (504)
T ss_pred HHHHHHHc--cCcchhhHHHH----H---HHHHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHh
Confidence 77766665 4666632 211 0 112222222233322 1122333333333322 22
Q ss_pred CCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 497 FKTTK-----NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 497 ~~p~~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
..|.. ..+..+-..++..|++.+|++...+++.++|+|..++.--+.+|.-...+|+|..-++...+
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 22321 12233334445566666666666666666666666666666666666666666666665553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.5e-05 Score=79.57 Aligned_cols=195 Identities=13% Similarity=0.008 Sum_probs=92.9
Q ss_pred HHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcCH--HHHHHHHHHHH
Q 005305 371 SALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM-RPNH--VTFLAVLSACS 444 (703)
Q Consensus 371 ~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~ 444 (703)
..+...+...|++++|...+++... .+...+..+...|...|++++|+.++++...... .|+. ..+..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3344455556666666666555532 2334445555555566666666666655554211 1121 12333444555
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCchHHH-H--HHHHHHHhcCChHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHc
Q 005305 445 RSGLSERGWEIFQSMSRDHKIKPRAMHY-A--CMIELLGREGLLDEAFAL---IRG---A-PFKTTKNMWAALLTACRVN 514 (703)
Q Consensus 445 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---m-~~~p~~~~~~~ll~a~~~~ 514 (703)
..|+.++|..+++.........+..... + .+..-+...|..+.+.+. ... . +.............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 5666666666665553211111111110 1 112222222322222111 111 0 1000111222344455566
Q ss_pred CChhHHHHHHHHHhCCC---------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 515 GNLELGKFAAEKLYGME---------PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 515 g~~~~a~~~~~~~~~~~---------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
|+.+.|....+.+.... +.......+.+.++...|++++|.+.+.......
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 66777766665554211 1124556677888899999999999998877544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.0002 Score=78.87 Aligned_cols=445 Identities=13% Similarity=0.095 Sum_probs=247.9
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHc----CCCCCChhh
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFE----GGFDVGSST 132 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~----~~~~p~~~t 132 (703)
+..++|+|...|...++-.+- .+.+ |..-=+..++ |+..+++.-|.-.|++-... . +.-....
T Consensus 871 d~a~hnAlaKIyIDSNNnPE~-----fLke------N~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~-vcNeNSl 938 (1666)
T KOG0985|consen 871 DPATHNALAKIYIDSNNNPER-----FLKE------NPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELIN-VCNENSL 938 (1666)
T ss_pred chHHHhhhhheeecCCCChHH-----hccc------CCcchhhHHhhhhcccCCceEEEeecccCCcHHHHH-hcCchhH
Confidence 778899999999886654433 2222 2222233455 77777766555444332100 0 1111122
Q ss_pred HHHHHHHHhccCChH-----------HHHHHHHHHHHhCCC--CCcchHHHHHHHHHhCCChHHHHHHHccCC-CCCccc
Q 005305 133 YDALISACIGLRSIR-----------EVKRVFSYMLSTGFE--PDLYMRNRVLLMHVRCGMMIDARRLFDEMP-ERNLVS 198 (703)
Q Consensus 133 ~~~ll~~~~~~~~~~-----------~a~~l~~~~~~~g~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-~~d~~~ 198 (703)
|....+......+.+ --+++.++.+..+++ .|+.-.+.-+.++...+-..+-.++++++. ++++.+
T Consensus 939 fK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fs 1018 (1666)
T KOG0985|consen 939 FKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS 1018 (1666)
T ss_pred HHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccc
Confidence 333333333222221 235667777766653 345555666777777788888888887764 233332
Q ss_pred -----HHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 005305 199 -----CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273 (703)
Q Consensus 199 -----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 273 (703)
-|.||-.-.+ .+.....+..+++-. +.-..+...+...+-+++|..+|... ..+....+.|+
T Consensus 1019 e~~nLQnLLiLtAik-ad~trVm~YI~rLdn-------yDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLi 1085 (1666)
T KOG0985|consen 1019 ENRNLQNLLILTAIK-ADRTRVMEYINRLDN-------YDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLI 1085 (1666)
T ss_pred cchhhhhhHHHHHhh-cChHHHHHHHHHhcc-------CCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHH
Confidence 3333333222 344555566555522 22223344455566677777777543 44555556666
Q ss_pred HHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 005305 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353 (703)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 353 (703)
+- -+.++.|.++-++..+| ..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.++.-..
T Consensus 1086 e~---i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1086 EN---IGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HH---hhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 53 46788888888877765 57999999999999999998877542 367789999999999999999998
Q ss_pred HHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChh--------------------------hHHHHHHH
Q 005305 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI--------------------------SWNALIAG 407 (703)
Q Consensus 354 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~--------------------------~~~~li~~ 407 (703)
.+..+.+..-+| .+-+.||-+|+|.+++.+-+++.. .||+. -|..|...
T Consensus 1155 yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~T 1229 (1666)
T KOG0985|consen 1155 YLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLAST 1229 (1666)
T ss_pred HHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHH
Confidence 888887765554 456789999999999888776643 23333 34444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHH
Q 005305 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 487 (703)
+...|++..|.+.-++. .+..||.-+-.+|...+.+..|. |.- ..+.-..+-..-++.-|...|.++|
T Consensus 1230 LV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred HHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHH
Confidence 44455554444433321 13345555555555544433221 211 1222233444556666666666666
Q ss_pred HHHHHHh-CCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 488 AFALIRG-APFK-TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 488 A~~~~~~-m~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
-..+++. ++.+ .....|+-|.-.|.+.. .++-.+.++-... ....--++.+.-++..|.|..=++.+-
T Consensus 1298 lIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFws-----RvNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1298 LISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWS-----RVNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666654 3332 23334444444444432 2222222222211 011123455566666666665555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-06 Score=88.85 Aligned_cols=218 Identities=17% Similarity=0.091 Sum_probs=167.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHH
Q 005305 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVE 419 (703)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 419 (703)
.+.|++..|.-.|+..++..+ .+...|--|.......++=..|+..+.+..+ .|....-+|...|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 456778888888888877653 3677888888888888887788887777643 355666677778888888888998
Q ss_pred HHHHHHHcCCC--------cCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 005305 420 LFEQMLLNGMR--------PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491 (703)
Q Consensus 420 l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 491 (703)
.++.-+....+ ++..+-.. ....+...+....++|-.+....+..+|++++.+|.-+|--.|.+++|.+-
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88877653211 01000000 122223344556677777766677678889999999999999999999999
Q ss_pred HHh-CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 492 IRG-APFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 492 ~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
|+. +..+| |...|+-|....+...+.++|..++.+++++.|.-+.+...|+-.|...|.++||.+.+-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 997 56677 5669999999999999999999999999999999999999999999999999999998876553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.4e-05 Score=82.30 Aligned_cols=88 Identities=18% Similarity=0.125 Sum_probs=38.8
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCc--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLC--KN-VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 449 (703)
|...|-..|+.++|.+..++.+. |+ +..|..-...|-+.|++.+|.+.++..+..... |...=+-....+.+.|++
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCH
Confidence 34444445555555555554432 21 223333444445555555555555554442211 223333333444455555
Q ss_pred HHHHHHHHHhHh
Q 005305 450 ERGWEIFQSMSR 461 (703)
Q Consensus 450 ~~a~~~~~~m~~ 461 (703)
++|.+++....+
T Consensus 279 e~A~~~~~~Ftr 290 (517)
T PF12569_consen 279 EEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHhhcC
Confidence 555555444433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-05 Score=72.82 Aligned_cols=190 Identities=16% Similarity=0.066 Sum_probs=95.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHH
Q 005305 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAV 418 (703)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 418 (703)
|...|+...|+.-++.+++... .+..++..+...|.+.|..+.|.+-|+... ..+-...|....-+|.+|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 3444444444444444444321 133444455555555555555555555442 223334455555555566666666
Q ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC--
Q 005305 419 ELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-- 495 (703)
Q Consensus 419 ~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-- 495 (703)
..|++....-.-|.. .||..+.-+..+.|+.+.|..+|++..+ -.+........+.+.....|++-.|..+++..
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 666665543222221 4555555555556666666666665554 11222334445555555666666666555543
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 496 ~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
...++..+....+..-...||.+.+-+.-.++....|.+
T Consensus 202 ~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 202 RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 122444444444555556666666666555555555653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00017 Score=75.81 Aligned_cols=150 Identities=10% Similarity=-0.015 Sum_probs=74.9
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCcHHHHH---HHHHHHHhCCCHHHHHHHHhhcCCCCcc---cHHHHHHHHHHcCCcHH
Q 005305 242 AGLELISVGKQLHSCALKMGFGDNVFVSC---ALIDMYSKCGSIEDAQGVFDEMSEKTTV---GWNTIIAGYALHGYSEE 315 (703)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~Li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~ 315 (703)
...|+++.+..++..+++.. +.|...+. .+.......+..+.+.+.++.....+.. .+..+...+...|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 44566666666666655543 33333333 1111122234444555555442222222 22233345666677777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-Cch--HHHHHHHhhHHhcCCHHHHHHHhhh
Q 005305 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG-LDI--VANSALVDFYSKWGRIEDARHVFDK 392 (703)
Q Consensus 316 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~--~~~~~Li~~y~k~g~~~~A~~~f~~ 392 (703)
|...+++..+.. +.+...+..+...+...|++++|...+....+.... ++. ..+..+...|...|+.++|..+|++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777766642 223344455555556666666666666665553221 111 2233455566666666666666666
Q ss_pred c
Q 005305 393 M 393 (703)
Q Consensus 393 m 393 (703)
.
T Consensus 212 ~ 212 (355)
T cd05804 212 H 212 (355)
T ss_pred H
Confidence 5
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.7e-05 Score=81.37 Aligned_cols=174 Identities=17% Similarity=0.116 Sum_probs=114.5
Q ss_pred HHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 384 EDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 384 ~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
..|...+...+ ..+...||+|.-. ...|.+.-|.-.|-+-... .+.+..+|..+.-.|....+++.|.+.|....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35555555542 3566778776554 5556666666666554443 12245777777777888889999999998775
Q ss_pred hhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHh-----C--CCCCCHHHHHHHHHHHHHcCChhHHHH----------
Q 005305 461 RDHKIKP-RAMHYACMIELLGREGLLDEAFALIRG-----A--PFKTTKNMWAALLTACRVNGNLELGKF---------- 522 (703)
Q Consensus 461 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~-----m--~~~p~~~~~~~ll~a~~~~g~~~~a~~---------- 522 (703)
. +.| +..-|-...-.....|+.-++..+|.- + +.-|+..-|.....-..++|+.++-..
T Consensus 878 S---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 878 S---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred h---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 4 344 344444444444567888888888754 1 123555566655555566776655433
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 523 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
+.++.++-.|++..+|.+.+...-+.+.+.+|.++..+..
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4566678889999999999999999999988888776653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-06 Score=86.10 Aligned_cols=244 Identities=13% Similarity=0.088 Sum_probs=119.0
Q ss_pred hCCCHHHHHHHHhhcCCC----CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 005305 278 KCGSIEDAQGVFDEMSEK----TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353 (703)
Q Consensus 278 ~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 353 (703)
-.|++..+..-.+ .... +.....-+.++|...|+++.++. +..... .|.......+...+....+-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3566666665444 2111 12234445566666776655432 222222 4444444333333333233333322
Q ss_pred HHHHHHHcCCC-CchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 005305 354 AHAGLVRHGFG-LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432 (703)
Q Consensus 354 ~~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 432 (703)
-+...+..... .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 22222211111 22223333334455556666666665543 33333444455555555555555555555432 222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 005305 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF--KTTKNMWAALLTA 510 (703)
Q Consensus 433 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a 510 (703)
.+...+..+ .+..+.-.+.+.+|.-+|+++.. .+++.+.+.+..+
T Consensus 164 -~~l~qLa~a--------------------------------wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 164 -SILTQLAEA--------------------------------WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp -HHHHHHHHH--------------------------------HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred -HHHHHHHHH--------------------------------HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 222222222 12222222356666666666422 3456666677777
Q ss_pred HHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCh-HHHHHHHHHHHh
Q 005305 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL-KEAAEVIRTLRR 563 (703)
Q Consensus 511 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~A~~~~~~m~~ 563 (703)
....|++++|+..++++++.+|+++.+...++-+....|+. +.+.+.+.+++.
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 77777777777777788888888888888888888888887 567777777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-05 Score=79.74 Aligned_cols=245 Identities=13% Similarity=0.021 Sum_probs=144.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHc-CCcHHHH
Q 005305 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH-GYSEEAL 317 (703)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~ 317 (703)
+-..-.|++..+..-.. .....-+.+.....-+.++|...|+.+.+..-...-..|.......+. .|... ++-+.++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la-~y~~~~~~~e~~l 86 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLA-EYLSSPSDKESAL 86 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHH-HHHCTSTTHHCHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHH-HHHhCccchHHHH
Confidence 34455688877775444 222221223445566778888899988766555444445555554443 34433 3445555
Q ss_pred HHHHHHHHCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcC
Q 005305 318 DLYYEMRDSGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396 (703)
Q Consensus 318 ~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~ 396 (703)
.-+++.......+ +..........+...|+++.|.+++... .+.......+..|.+.++++.|.+.++.|.+-
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5554443333332 3332233334456789999988776532 35667777899999999999999999999643
Q ss_pred --ChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchH
Q 005305 397 --NVISWNALIAGYG----NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470 (703)
Q Consensus 397 --~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 470 (703)
|.. -..+..++. -...+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++..... .-+-++.
T Consensus 161 ~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d 236 (290)
T PF04733_consen 161 DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPD 236 (290)
T ss_dssp SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHH
T ss_pred CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHH
Confidence 322 222333322 233588999999997654 567778888888888888888888888877654 2233455
Q ss_pred HHHHHHHHHHhcCCh-HHHHHHHHhC
Q 005305 471 HYACMIELLGREGLL-DEAFALIRGA 495 (703)
Q Consensus 471 ~~~~li~~~~~~g~~-~~A~~~~~~m 495 (703)
+...++-.....|+. +.+.+++.++
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 555566666666666 4455566655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.6e-05 Score=77.61 Aligned_cols=217 Identities=13% Similarity=0.098 Sum_probs=139.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChh----------hHHHH
Q 005305 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI----------SWNAL 404 (703)
Q Consensus 335 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~----------~~~~l 404 (703)
...+.++.-+..+++.+.+-+...+... .++.-++.....|...|....+...-+...+..-. +...+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445556666667777777777777654 46666677777788877777776665554332211 12223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchH-HHHHHHHHHHhcC
Q 005305 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM-HYACMIELLGREG 483 (703)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g 483 (703)
..+|.+.++++.|+..|.+.......||..+ +....+++....+... -+.|... -...-..-+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 3466667788888888888776555554321 2222333333333221 2333321 1112245566788
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 484 LLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 484 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
++.+|.+.+.++ ...| |...|.....+|.+.|++..|..-.+..++++|+.+..|.-=+-++....+|++|.+.+++.
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888774 2344 56677887788888888888888888888888888888887777788888888888888877
Q ss_pred HhCC
Q 005305 562 RRKG 565 (703)
Q Consensus 562 ~~~~ 565 (703)
.+.+
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 6544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.8e-05 Score=78.71 Aligned_cols=195 Identities=16% Similarity=0.247 Sum_probs=131.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHH
Q 005305 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418 (703)
Q Consensus 339 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 418 (703)
+.+......+..|..+++.+...... ..-|.-+.+-|+..|+++.|+++|.+. ..++--|..|.+.|++++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence 34445566777788887777664322 234566778888888888888888764 23455677888888888888
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 005305 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498 (703)
Q Consensus 419 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 498 (703)
++-.+.. |.......|.+-..-.-..|.+.+|.+++-.+. .|+. .|.+|-+.|..++.+++.++-.-.
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 8766543 333334555555555667788888877764332 2543 467888888888888888765311
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 499 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
--..|-..+..-+-..|+...|+.-+-++ .-|-.-+++|..++.|++|.++-+.
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 11234555566667778888887766543 4477788999999999999887654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00016 Score=86.39 Aligned_cols=324 Identities=11% Similarity=-0.002 Sum_probs=200.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC----CC---c---c--cHHHHHHHHHH
Q 005305 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE----KT---T---V--GWNTIIAGYAL 309 (703)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~---~---~--~~~~li~~~~~ 309 (703)
...|+++........+.......++.........+...|++++|...+..... .+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34466665555554431111112223334445556678999998888875421 11 1 1 11122334567
Q ss_pred cCCcHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CchHHHHHHHhhHHhc
Q 005305 310 HGYSEEALDLYYEMRDSGVKMDH----FTFSMIIRICTRLASLEHAKQAHAGLVRH----GFG-LDIVANSALVDFYSKW 380 (703)
Q Consensus 310 ~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~Li~~y~k~ 380 (703)
.|++++|...+++..+.-...+. .....+...+...|+++.|...+...... |.. ....+...+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999987763111222 22344445567789999999998887652 211 1223456667788889
Q ss_pred CCHHHHHHHhhhcCc-------CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCcC--HHHHHHHHHHHHc
Q 005305 381 GRIEDARHVFDKMLC-------KN----VISWNALIAGYGNHGRGEEAVELFEQMLLN--GMRPN--HVTFLAVLSACSR 445 (703)
Q Consensus 381 g~~~~A~~~f~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~ 445 (703)
|+++.|...+++... ++ ...+..+...+...|++++|...+++.... ...|. ..++..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998877521 11 123444555667789999999999887652 11222 2344445567778
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHc
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHY-----ACMIELLGREGLLDEAFALIRGAPFK--TTK----NMWAALLTACRVN 514 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~a~~~~ 514 (703)
.|+.++|.+.++..............+ ......+...|+.+.|.+.+...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988875421111111111 11224445689999999998764321 111 1234566677888
Q ss_pred CChhHHHHHHHHHhCCC------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 515 GNLELGKFAAEKLYGME------PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 515 g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
|+.++|...++++.... +....++..++.+|.+.|+.++|.+.+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999988876432 2223467788999999999999999999987644
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0026 Score=66.78 Aligned_cols=409 Identities=12% Similarity=0.048 Sum_probs=240.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHH--HHHHHH--hCCC
Q 005305 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNM--IIAGMI--DSGD 211 (703)
Q Consensus 136 ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~--li~~~~--~~g~ 211 (703)
=++-+...+++++|.+....++..+ +.|...+..=+-+....+.+++|+++.+.-.... +++. +=.+|+ +.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHccc
Confidence 3445667889999999999999876 5566666666777788899999997776544311 2222 234444 6789
Q ss_pred hhHHHHHHHHhHHcCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhCCCHHHHHHHH
Q 005305 212 YLEAFLLFLDLWEEFSDCGS-RTFATMIRASAGLELISVGKQLHSCALKMGFG-DNVFVSCALIDMYSKCGSIEDAQGVF 289 (703)
Q Consensus 212 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f 289 (703)
.++|+..+. |..++. .+...=...|-+.++++++..++..+.+.+.+ .|......++.+-.. -.+. +.
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~ 164 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LL 164 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HH
Confidence 999999987 334333 35555567788999999999999999998742 233333333332211 1121 34
Q ss_pred hhcCCCCcccHHHH---HHHHHHcCCcHHHHHHHHHHHHCC-------CCCCH------hh-HHHHHHHHhccCCHHHHH
Q 005305 290 DEMSEKTTVGWNTI---IAGYALHGYSEEALDLYYEMRDSG-------VKMDH------FT-FSMIIRICTRLASLEHAK 352 (703)
Q Consensus 290 ~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g-------~~pd~------~t-~~~ll~a~~~~~~~~~a~ 352 (703)
+..+.....+|..+ ...+...|++.+|++++....+.+ -.-+. .+ -.-+.-++-..|+-+++.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45544333344443 335678999999999999873211 11111 11 112333456789999999
Q ss_pred HHHHHHHHcCCCCch---HHHHHHHhhHHhcCCHH-HHHHHhhhcCcCCh--------------hhHHH-HHHHHHhcCC
Q 005305 353 QAHAGLVRHGFGLDI---VANSALVDFYSKWGRIE-DARHVFDKMLCKNV--------------ISWNA-LIAGYGNHGR 413 (703)
Q Consensus 353 ~~~~~~~~~g~~~~~---~~~~~Li~~y~k~g~~~-~A~~~f~~m~~~~~--------------~~~~~-li~~~~~~g~ 413 (703)
+++..+++......+ ...|.|+.+-.-..-.+ .+...|+....... +..|. ++..|. +.
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk 322 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK 322 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence 999999997654221 23344443322221111 23333333322221 12222 222222 22
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc--CCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHH
Q 005305 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS--GLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFA 490 (703)
Q Consensus 414 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 490 (703)
.+.+.++-.... +..|. ..+..++..+.+. ....++..++....+ +.+-. ..+.-.++......|+++.|.+
T Consensus 323 ~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 323 MDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 233333332221 22333 4455555554432 245667777766654 22222 4455567778889999999999
Q ss_pred HHH--------hCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhC----CCCCC---cchHHHHHHHHHhCCChHHH
Q 005305 491 LIR--------GAP-FKTTKNMWAALLTACRVNGNLELGKFAAEKLYG----MEPEK---LSNYVVLLNIYNSSGKLKEA 554 (703)
Q Consensus 491 ~~~--------~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~p~~---~~~~~~l~~~y~~~g~~~~A 554 (703)
++. .++ +.-.+.+..++...+.+.++.+-|..++.++++ ..+.. ...+-.++..-.+.|+-++|
T Consensus 398 il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 988 332 222344556677777777777777777766652 22221 23344555556678999999
Q ss_pred HHHHHHHHhC
Q 005305 555 AEVIRTLRRK 564 (703)
Q Consensus 555 ~~~~~~m~~~ 564 (703)
..+++++.+.
T Consensus 478 ~s~leel~k~ 487 (652)
T KOG2376|consen 478 SSLLEELVKF 487 (652)
T ss_pred HHHHHHHHHh
Confidence 9999999863
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-07 Score=59.92 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=26.1
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHccCC
Q 005305 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192 (703)
Q Consensus 160 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 192 (703)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00075 Score=80.65 Aligned_cols=327 Identities=11% Similarity=-0.014 Sum_probs=203.9
Q ss_pred HHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC------CCc--HHHHHHHHHHHH
Q 005305 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF------GDN--VFVSCALIDMYS 277 (703)
Q Consensus 206 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~Li~~y~ 277 (703)
....|++..+...+..+.......+..........+...|+++++...+..+.+.-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 345677777767666653221111222223334445677899999988887755311 111 122233445667
Q ss_pred hCCCHHHHHHHHhhcCC----CCc----ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCC---CCC--HhhHHHHHHHHhc
Q 005305 278 KCGSIEDAQGVFDEMSE----KTT----VGWNTIIAGYALHGYSEEALDLYYEMRDSGV---KMD--HFTFSMIIRICTR 344 (703)
Q Consensus 278 ~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~a~~~ 344 (703)
..|++++|...+++... .+. ..++.+...+...|++++|...+.+.....- .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 89999999998887543 221 2345566677889999999999988764211 111 2234455566788
Q ss_pred cCCHHHHHHHHHHHHHc----CCC--C-chHHHHHHHhhHHhcCCHHHHHHHhhhcCc------C--ChhhHHHHHHHHH
Q 005305 345 LASLEHAKQAHAGLVRH----GFG--L-DIVANSALVDFYSKWGRIEDARHVFDKMLC------K--NVISWNALIAGYG 409 (703)
Q Consensus 345 ~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~------~--~~~~~~~li~~~~ 409 (703)
.|+++.|...+...... +.. + ....+..+...+...|++++|...+++... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998887652 221 1 223455566777788999999988887621 1 1234444566788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCc-CHHHH-----HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc---hHHHHHHHHHHH
Q 005305 410 NHGRGEEAVELFEQMLLNGMRP-NHVTF-----LAVLSACSRSGLSERGWEIFQSMSRDHKIKPR---AMHYACMIELLG 480 (703)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~-----~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~ 480 (703)
..|+.++|...+.+.....-.. ....+ ...+..+...|+.+.+.+.+...... ..... ...+..+..++.
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHH
Confidence 8999999999998886521111 11111 11123445578999999987765431 11111 111345667788
Q ss_pred hcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 481 REGLLDEAFALIRGA-------PFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 481 ~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
..|+.++|...+++. +..++ ..+...+..++...|+.++|...+.+++++...
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 999999998888764 11222 235566677888999999999999999876644
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-05 Score=89.48 Aligned_cols=198 Identities=16% Similarity=0.181 Sum_probs=167.0
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCcC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCK--------NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 437 (703)
+...|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|++..+. .--...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4567777788888899999999999887321 2347999999888889888999999999873 22236788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCC---CHHHHHHHHHHHHH
Q 005305 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKT---TKNMWAALLTACRV 513 (703)
Q Consensus 438 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p---~~~~~~~ll~a~~~ 513 (703)
.|+..|.+.+..++|-++++.|.+.++ .....|..+++.+.+..+-++|..++.+ |..-| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999666 6677899999999999999999999887 33333 34455666677789
Q ss_pred cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 005305 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 567 (703)
+|+.++|+.+|+.++.-.|.-...|..++++-.+.|..+.++.+|++....++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998999999999999999999999999999987764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0014 Score=70.93 Aligned_cols=139 Identities=10% Similarity=-0.006 Sum_probs=81.9
Q ss_pred cccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCC--------CCChhhHHHH
Q 005305 66 LKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGF--------DVGSSTYDAL 136 (703)
Q Consensus 66 i~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~--------~p~~~t~~~l 136 (703)
.+.|.--|+++.| .+-..-+. .-+.|..|.+ +++.++.+-|.-.+..|....+. .|+ .+=..+
T Consensus 735 FSfyvtiG~MD~A---fksI~~Ik----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakv 806 (1416)
T KOG3617|consen 735 FSFYVTIGSMDAA---FKSIQFIK----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKV 806 (1416)
T ss_pred eeEEEEeccHHHH---HHHHHHHh----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHH
Confidence 3467777888888 54444443 3456999988 88888887777666665431111 122 222223
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCC-CcccHHHHHHHHHhCCChhHH
Q 005305 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAGMIDSGDYLEA 215 (703)
Q Consensus 137 l~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~A 215 (703)
.-.....|.+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.-..- =-.||.....-+-..++.+.|
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHH
Confidence 33345678888888888887753 33446677778888888776543221 112344444444445666666
Q ss_pred HHHHHH
Q 005305 216 FLLFLD 221 (703)
Q Consensus 216 ~~~~~~ 221 (703)
++.|+.
T Consensus 878 leyyEK 883 (1416)
T KOG3617|consen 878 LEYYEK 883 (1416)
T ss_pred HHHHHh
Confidence 666653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.1e-05 Score=72.34 Aligned_cols=298 Identities=13% Similarity=0.065 Sum_probs=157.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC----CCcccHHHHHHHHHHcCCcHHHHHH
Q 005305 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE----KTTVGWNTIIAGYALHGYSEEALDL 319 (703)
Q Consensus 244 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l 319 (703)
.+++..++.+.++... +.+..+.+...-...+.|+++.|.+-|+...+ .....||..+.. .+.|+++.|++.
T Consensus 125 e~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~ 200 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKH 200 (459)
T ss_pred cccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHH
Confidence 3455555555444332 12334444555556678888888888887654 245567765554 457888899998
Q ss_pred HHHHHHCCCCCCHhh----HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc
Q 005305 320 YYEMRDSGVKMDHFT----FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395 (703)
Q Consensus 320 ~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 395 (703)
..+..+.|++--+.. -.-.+++ ...|+ -..+|... -+..+|.-...+.+.|+.+.|.+.+-.|+.
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCch-hcccc---hHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 888888876532210 0000000 00011 11111111 122344445567789999999999999975
Q ss_pred C-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCC-Cch
Q 005305 396 K-----NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK-PRA 469 (703)
Q Consensus 396 ~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~ 469 (703)
+ |++|...+.-.- ..+++.+..+-+.-+.+...- -..||..++-.|++..-++.|-.++.+-.. .... .+.
T Consensus 270 RaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~ 346 (459)
T KOG4340|consen 270 RAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTP 346 (459)
T ss_pred cccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhH
Confidence 4 667665543222 234455555555555554222 347999999999999988888887643221 0000 122
Q ss_pred HHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCChhHHHH----HHHHHhCCCCCCcchHHHHHH
Q 005305 470 MHYACMIELLG-REGLLDEAFALIRGAPFKTTKNMWAALLTA-CRVNGNLELGKF----AAEKLYGMEPEKLSNYVVLLN 543 (703)
Q Consensus 470 ~~~~~li~~~~-~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a-~~~~g~~~~a~~----~~~~~~~~~p~~~~~~~~l~~ 543 (703)
..|+ |++++. -.-..++|++-++.+...-....-..-+.. -.++.+-+++.+ .+++.+++- ......-++
T Consensus 347 Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~Ak 422 (459)
T KOG4340|consen 347 YLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAK 422 (459)
T ss_pred HHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 2232 344444 345677776665543210000000000110 012222222222 233333221 123456677
Q ss_pred HHHhCCChHHHHHHHHHHHh
Q 005305 544 IYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 544 ~y~~~g~~~~A~~~~~~m~~ 563 (703)
+|.+..++..++++|..-.+
T Consensus 423 iyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 423 IYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred hhccccccHHHHHHHHHHHh
Confidence 78888899999999877654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00013 Score=80.52 Aligned_cols=378 Identities=13% Similarity=0.028 Sum_probs=222.7
Q ss_pred chHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCC-CCChhhHHHHHHHH
Q 005305 166 YMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRAS 241 (703)
Q Consensus 166 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~ 241 (703)
..|..|-..|...-+...|.+.|+..-+ -|..+|-...+.|++..++++|+.+.-.--+... ..-...|....-.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4678888888888888999999987765 4677899999999999999999988332221110 00111233333445
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHH---HHHHHHcCCcHHHHH
Q 005305 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI---IAGYALHGYSEEALD 318 (703)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~ 318 (703)
...++...+..-++...+.. +.|...|..|..+|..+|++..|.++|++...-++.+|-.- ...-+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 66677777777777777765 67889999999999999999999999988776555443322 223456899999998
Q ss_pred HHHHHHHC------CCCCCHhhHHHHHHHHhccCCH-------HHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHH
Q 005305 319 LYYEMRDS------GVKMDHFTFSMIIRICTRLASL-------EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385 (703)
Q Consensus 319 l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 385 (703)
.+...... +..--..++..+...+...|-. +.+.+.+..++......+...|-.+ .+
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sd 721 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SD 721 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hH
Confidence 88776542 1111112222222222222222 2233333333332222233333222 22
Q ss_pred HHHHhhhcCcCChh--hHHHHHHH-HHhcCCH---H---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHc----cC----C
Q 005305 386 ARHVFDKMLCKNVI--SWNALIAG-YGNHGRG---E---EAVELFEQMLLNGMRPNHVTFLAVLSACSR----SG----L 448 (703)
Q Consensus 386 A~~~f~~m~~~~~~--~~~~li~~-~~~~g~~---~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g----~ 448 (703)
|..+|-... ||.+ .+..++.. +-..+.. + -+.+.+-.-+. ...+..+|..+...+.+ .| +
T Consensus 722 ac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 722 ACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred HHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchh
Confidence 333343332 3321 11111111 1111111 1 01111111111 11123344444333322 22 2
Q ss_pred HHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005305 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEK 526 (703)
Q Consensus 449 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 526 (703)
...|...+...++ --..+...|+.| ..++..|++.-|..-|-+. .. +....+|..+...|....+++-|..++.+
T Consensus 799 ~~~Ai~c~KkaV~--L~ann~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVS--LCANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHHH--HhhccHHHHHHH-HHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHh
Confidence 2355566655554 122344455544 4446667887777666542 22 34667899999899999999999999999
Q ss_pred HhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 527 ~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
...++|.|...|.-...+-...|+.-++..+|..
T Consensus 876 ~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 876 VQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9999999999998888888888988888888876
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.6e-07 Score=57.99 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=23.4
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005305 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496 (703)
Q Consensus 464 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 496 (703)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.5e-05 Score=74.96 Aligned_cols=179 Identities=15% Similarity=0.085 Sum_probs=119.5
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CC-h---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH----H
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC--KN-V---ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV----T 435 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 435 (703)
....+..+...|.+.|++++|...|+++.. |+ . ..|..+...|...|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 455667777778888888888888887743 22 1 35666777888888888888888888774 33321 3
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHhHhhcCCCCch-HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005305 436 FLAVLSACSRS--------GLSERGWEIFQSMSRDHKIKPRA-MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506 (703)
Q Consensus 436 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 506 (703)
+..+..++.+. |+.++|.+.|+.+.+. .|+. ..+..+... +....... .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~~-----------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRLA-----------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHHH-----------HHHHH
Confidence 44444455443 6677788888877663 2332 122111111 11111100 01124
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPEK---LSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+...+...|+++.|...+++++...|++ +..+..++.+|.+.|++++|.+.++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566788999999999999999887764 468899999999999999999999888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0021 Score=69.62 Aligned_cols=404 Identities=15% Similarity=0.168 Sum_probs=236.5
Q ss_pred CcccHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh-C-------C-
Q 005305 94 SAGICSQIEK---LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST-G-------F- 161 (703)
Q Consensus 94 ~~~~~~~li~---~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~-g-------~- 161 (703)
|.++-.+|+. |+..|+.+.|++-.+.++ +...|..+.+.|.+.++++-|+-.+..|... | .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 6677778876 788899998888766554 3467888999999888888887777666432 1 1
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHH
Q 005305 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS 241 (703)
Q Consensus 162 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 241 (703)
.++ ..-....-.....|.+++|+.++.+-.. |..|=..|-..|.+++|+++-+.=-+ +. -..||-.-..-+
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYL 868 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHH
Confidence 121 2222333344567888999998887765 33455667778899999888654211 11 123555555555
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHH
Q 005305 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321 (703)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 321 (703)
-..+|.+.|.+.|+.. | .+-..+...|. .+...-....+++.++....| ...-.-..|+.+.|+.+|.
T Consensus 869 ear~Di~~AleyyEK~---~-~hafev~rmL~------e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKA---G-VHAFEVFRMLK------EYPKQIEQYVRRKRDESLYSW--WGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred HhhccHHHHHHHHHhc---C-ChHHHHHHHHH------hChHHHHHHHHhccchHHHHH--HHHHHhcccchHHHHHHHH
Confidence 5667777777776543 2 11112222111 223344444555555533332 3333345788999999887
Q ss_pred HHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhH
Q 005305 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401 (703)
Q Consensus 322 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~ 401 (703)
..+. |-++....+-.|+.++|.++-++- .|....--|..+|-..|++.+|..+|.+.. ++
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----af 996 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AF 996 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HH
Confidence 7653 345566667778888887765532 256667778899999999999998887652 22
Q ss_pred HHHHHHHHhcC---------------CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHH---------HH
Q 005305 402 NALIAGYGNHG---------------RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI---------FQ 457 (703)
Q Consensus 402 ~~li~~~~~~g---------------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~ 457 (703)
..-|..|-.++ +.-.|-+.|++. |.. +...+..|-++|.+.+|+++ ++
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 22222222222 222333344332 111 11223345666766666543 23
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhC---CCCCC
Q 005305 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG---MEPEK 534 (703)
Q Consensus 458 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~---~~p~~ 534 (703)
-+.++..-..|+...+-..+.+....++++|..++-... -|.-.+..|.. .++.--++..+.+.- -+|+.
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQLCKN-RNVRVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHhc-CCCchhHHHHHhcCcCcCCCccH
Confidence 334444445567777777777777778888877764321 23333344433 334444444444431 11221
Q ss_pred ---cchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 535 ---LSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 535 ---~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
......+++.+.++|.+..|.+=|.+
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 23566788888888888877765543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0011 Score=63.65 Aligned_cols=274 Identities=14% Similarity=0.103 Sum_probs=135.9
Q ss_pred cCCCCcccchhhcccccCccCCCCCc-ccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHH-HHHHhccCCh
Q 005305 70 PKPNKIYTEELKESSLPDTQMKKPSA-GICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDAL-ISACIGLRSI 146 (703)
Q Consensus 70 ~k~~~~~~aa~~~~~f~~~~~~~p~~-~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l-l~~~~~~~~~ 146 (703)
.+..++.++ .+++....++.|.. ...+.+-- |-+..++..|-+.|+++... .|...-|..- ..++-+.+.+
T Consensus 21 I~d~ry~Da---I~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 21 IRDARYADA---IQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHhhHHHH---HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhccc
Confidence 344566666 66665555554422 22333333 66666666666666666553 2333333211 2233345556
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHH--HH--HhCCChHHHHHHHccCCC-CCcccHHHHHHHHHhCCChhHHHHHHHH
Q 005305 147 REVKRVFSYMLSTGFEPDLYMRNRVLL--MH--VRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLFLD 221 (703)
Q Consensus 147 ~~a~~l~~~~~~~g~~~~~~~~~~Li~--~y--~~~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~ 221 (703)
..|..+...|... ++ ..+..+. .- -..+++..++.+.++.+. .+..+-+...-...+.|++++|++-|..
T Consensus 95 ADALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 95 ADALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 6666666555421 11 1121111 11 134666666777776663 4444444444445567777777777777
Q ss_pred hHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------------cHH--------HHHHHH-------
Q 005305 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD-------------NVF--------VSCALI------- 273 (703)
Q Consensus 222 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-------------~~~--------~~~~Li------- 273 (703)
..+-+---....|+..+..+ +.++++.|.+...+++.+|+.. |+. .-.+++
T Consensus 170 AlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 66543333344565555443 4567777777777777765422 110 111222
Q ss_pred HHHHhCCCHHHHHHHHhhcCCC-----CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH
Q 005305 274 DMYSKCGSIEDAQGVFDEMSEK-----TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348 (703)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 348 (703)
..+.+.|+.+.|.+.+..|+.+ |++|...+.-.- ..+++.+..+-+.-+...+. ....||..++-.|++..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 2234456666666666666543 444443332211 13334444443444443322 2344566666666665555
Q ss_pred HHHHHHHHH
Q 005305 349 EHAKQAHAG 357 (703)
Q Consensus 349 ~~a~~~~~~ 357 (703)
+.|..++.+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00023 Score=72.42 Aligned_cols=164 Identities=11% Similarity=0.051 Sum_probs=93.9
Q ss_pred CHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 005305 382 RIEDARHVFDKMLC---KNVISWNALIAGYGNHGRG--EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456 (703)
Q Consensus 382 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 456 (703)
+++++...++++.. ++..+|+.-...+.+.|+. ++++.+++++.+...+ |..+|.....++.+.|+++++.+.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34555555555432 2333455443333344432 4556666666653211 3455666666666666666666666
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhc---CC----hHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHc----CChhHHHHH
Q 005305 457 QSMSRDHKIKPRAMHYACMIELLGRE---GL----LDEAFALIRG-APFKT-TKNMWAALLTACRVN----GNLELGKFA 523 (703)
Q Consensus 457 ~~m~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~----g~~~~a~~~ 523 (703)
+.+++. -..+...|+.....+.+. |. .+++.++..+ +...| |...|+-+...+... +...++...
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 666552 123334444444333332 22 2345555533 44445 456888877777763 344668888
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhC
Q 005305 524 AEKLYGMEPEKLSNYVVLLNIYNSS 548 (703)
Q Consensus 524 ~~~~~~~~p~~~~~~~~l~~~y~~~ 548 (703)
+.+++..+|+++.+...|+++|+..
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888888999888999999999864
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00017 Score=82.12 Aligned_cols=217 Identities=18% Similarity=0.178 Sum_probs=170.6
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-C---CCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-C-cccHHHHH
Q 005305 231 SRTFATMIRASAGLELISVGKQLHSCALKMG-F---GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-T-TVGWNTII 304 (703)
Q Consensus 231 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~---~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~-~~~~~~li 304 (703)
+..|..-+......++++.|+++.+++++.= + +.-..+|.+++++-..-|.-+...++|++..+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4567777888888899999999988887641 2 123467888888888888888899999988753 3 34688899
Q ss_pred HHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CchHHHHHHHhhHHhcCCH
Q 005305 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG-LDIVANSALVDFYSKWGRI 383 (703)
Q Consensus 305 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~ 383 (703)
..|.+.+..++|.++|+.|.+. ..-....|...+..+.+...-+.|..++.++++.-.. -.+.+..-.+++-.++|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999875 3345667888888888988889999999999885322 2466777788888999999
Q ss_pred HHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCC
Q 005305 384 EDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGL 448 (703)
Q Consensus 384 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~ 448 (703)
+.++.+|+.... +-...|+..|..=.++|+.+.+..+|++....++.|-. ..|..-|.-=-..|+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 999999998853 34678999999999999999999999999998888765 444444443334444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.002 Score=66.98 Aligned_cols=234 Identities=13% Similarity=0.058 Sum_probs=150.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHhccCCHHHHHHHHHHHHHcCCCC--c----hHHHHH
Q 005305 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF-SMIIRICTRLASLEHAKQAHAGLVRHGFGL--D----IVANSA 372 (703)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~~~ 372 (703)
...+.++.-+..+++.|++-+....+.. ...|| +..-.++...+........-...++.|... + ......
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3345555666677777777777766653 33344 334445666666665555555554443221 0 011222
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCc--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLS 449 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 449 (703)
+..+|.+.++.+.|...|.+... ++.. ...+....++++.......- +.|.. .-...=...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 44578888999999999988632 2211 12233445666666555544 34443 1122225667889999
Q ss_pred HHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTK-NMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 450 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
..|...+.++++ .-+-|...|..-.-.|.+.|.+.+|++-.+. +...|+. ..|.-=..++....+++.|...+.+.
T Consensus 375 ~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 3366788899999999999999999887665 3334543 35555555666677899999999999
Q ss_pred hCCCCCCcchHHHHHHHHHh
Q 005305 528 YGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~ 547 (703)
++.+|++...-..+.+++..
T Consensus 453 le~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HhcCchhHHHHHHHHHHHHH
Confidence 99999987666655555554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.6e-05 Score=71.07 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=94.3
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--hhHH
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC-RVNGN--LELG 520 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~-~~~g~--~~~a 520 (703)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++. ...| +...+..+..+. ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566777777776665 34567788888888899999999999888874 3445 566777777764 66676 5899
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...++++++.+|+++.++..|+..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-05 Score=69.04 Aligned_cols=121 Identities=13% Similarity=-0.028 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005305 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF 497 (703)
Q Consensus 419 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 497 (703)
.+|++..+ +.|+. +.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 34443 33445566667777777777776654 22335566666666777777777777777653 22
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 498 KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 498 ~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
.| +...|..+..++...|+.++|...+++++++.|+++..|....++.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 33 4556666666777777777777777777777777766666555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0097 Score=62.01 Aligned_cols=74 Identities=11% Similarity=0.050 Sum_probs=44.6
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCCCCCc-ccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSA-GICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDA 135 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~-~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 135 (703)
|+..|+.||.-+.. ..+++. +..++++...-|.. ..|..-|. .....+++...++|.+....- .+...|..
T Consensus 19 di~sw~~lire~qt-~~~~~~---R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~l 91 (656)
T KOG1914|consen 19 DIDSWSQLIREAQT-QPIDKV---RETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWKL 91 (656)
T ss_pred cHHHHHHHHHHHcc-CCHHHH---HHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHHH
Confidence 66677777776555 366666 66666665554443 34666676 666777777777777666532 33444444
Q ss_pred HHH
Q 005305 136 LIS 138 (703)
Q Consensus 136 ll~ 138 (703)
-|.
T Consensus 92 Yl~ 94 (656)
T KOG1914|consen 92 YLS 94 (656)
T ss_pred HHH
Confidence 443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.9e-05 Score=77.00 Aligned_cols=216 Identities=16% Similarity=0.128 Sum_probs=157.1
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcCCcHHHH
Q 005305 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHGYSEEAL 317 (703)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~ 317 (703)
+.+.|++.+|.-.|+..++.. |.+...|--|...-...++-..|+..+.+..+- |....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 346678888888888888876 667888888888888888888888888877653 4455666667788888888999
Q ss_pred HHHHHHHHCCCC--------CCHhhHHHHHHHHhccCCHHHHHHHHHHHH-HcCCCCchHHHHHHHhhHHhcCCHHHHHH
Q 005305 318 DLYYEMRDSGVK--------MDHFTFSMIIRICTRLASLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSKWGRIEDARH 388 (703)
Q Consensus 318 ~l~~~m~~~g~~--------pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 388 (703)
..|+.-.....+ ++..+-.. ........+....++|-.+. ..+..+|+.+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 988877553210 00000000 11112222334444454444 45545788899999999999999999999
Q ss_pred HhhhcC--c-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 389 VFDKML--C-KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 389 ~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
.|+... + .|...||-|...++...+.++|+..|++.++ ++|+. .....|.-+|...|.+++|...|-.+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999874 3 4678999999999999999999999999998 68887 3444566689999999999988866543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-05 Score=68.95 Aligned_cols=107 Identities=10% Similarity=-0.052 Sum_probs=90.6
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCC
Q 005305 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGME 531 (703)
Q Consensus 454 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 531 (703)
.+++...+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 3454 3556788889999999999999884 3444 67799999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 532 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
|+++..+..++.+|...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987644
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.9e-05 Score=66.51 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
+.+..-.+...+...|++++|.++|+-+ ...| +..-|-.|...|...|++++|...+.++..++|+|+.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445556667778899999999999874 3345 5668889999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHH
Q 005305 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610 (703)
Q Consensus 546 ~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 610 (703)
...|+.+.|.+-|+...... + .+|+..++.+++...+..+.+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhhc
Confidence 99999999999999876421 1 457777777777777766543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.3e-06 Score=54.24 Aligned_cols=34 Identities=47% Similarity=0.857 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 432 (703)
++||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.5e-05 Score=79.83 Aligned_cols=216 Identities=13% Similarity=0.154 Sum_probs=170.6
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 005305 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341 (703)
Q Consensus 262 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 341 (703)
++|-......+...+.++|-...|..+|+++ ..|...|..|...|+..+|..+..+-.+ -+||+.-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4566667778889999999999999999985 4688899999999999999999888777 37899999888888
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHH
Q 005305 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAV 418 (703)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 418 (703)
.....-+++|.++.++.... .-..+.......++++++.+.|+.-.. --..+|-....+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 77777778888777765432 112222223346889999999986543 24568888888888999999999
Q ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 419 ELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 419 ~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+ +. ..+...|-..+-.....|.+++|.+.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99998876 58877 7899999999999999999999999988 55 334445656666778899999999998875
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.2e-05 Score=79.21 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=140.2
Q ss_pred CCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005305 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441 (703)
Q Consensus 362 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 441 (703)
+++|-...-..+...+.++|-...|..+|++. ..|--.|..|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555666677888999999999999999875 5677788899999999999998888776 3788888888888
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCChhH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKT-TKNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~ 519 (703)
......-+++|+++++..... .-..+.....+.++++++.+.++. +.+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777888888888766441 111112222346777777777765 44444 34477777777777778888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 520 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
|..+|.....++|++...|+.+..+|.+.|+-.+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8888888888888888888888888888888888888877777655
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.021 Score=63.23 Aligned_cols=213 Identities=14% Similarity=0.072 Sum_probs=118.6
Q ss_pred CCcccchhhcccccCccCCCCCcccHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHH
Q 005305 73 NKIYTEELKESSLPDTQMKKPSAGICSQIEK--LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK 150 (703)
Q Consensus 73 ~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~--~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 150 (703)
+++..| ....++...+.||....-++-+ +.+.|+.++|..+++.....+ ..|..|...+-..|...+..+++.
T Consensus 23 ~qfkka---l~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 23 SQFKKA---LAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHH---HHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHH
Confidence 344445 4444555555567666555555 788888888888888776654 347788888888888888888888
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhCCChHH----HHHHHccCCCCCcccHHHHHHHHHhCCC-hh---------HHH
Q 005305 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID----ARRLFDEMPERNLVSCNMIIAGMIDSGD-YL---------EAF 216 (703)
Q Consensus 151 ~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~----A~~~f~~m~~~d~~~~~~li~~~~~~g~-~~---------~A~ 216 (703)
.+++...+. .|+......+..+|+|.+.+.+ |.+++...+++--.-|+ +++.+.+.-. ++ -|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHH
Confidence 888888765 4556677777788888776654 66777766654444444 4444443311 11 233
Q ss_pred HHHHHhHHcCCCC-ChhhHHHHHHHHhcCCChHHHHHHHH-HHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 005305 217 LLFLDLWEEFSDC-GSRTFATMIRASAGLELISVGKQLHS-CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293 (703)
Q Consensus 217 ~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~-~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 293 (703)
+.++.+.+.+-+. +..-...-+..+...|.+++|..++. .....-...+...-+.-++.+.+++++.+-.++-.++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3344443332111 11111111222333455555555552 22222223334444455555555665555544444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00022 Score=67.52 Aligned_cols=135 Identities=17% Similarity=0.125 Sum_probs=105.5
Q ss_pred CCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 005305 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA--PFKTTKNMWAA 506 (703)
Q Consensus 429 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 506 (703)
..|+......+-.++...|+-+....+...... ..+.+......++....+.|++.+|...|.+. +.++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355443335555677777887777777666543 33445556666888888999999999999885 33668889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+..+|-+.|+.+.|+..+.+++++.|+++..++.|+-.|.-.|+.+.|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988776443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.4e-06 Score=53.08 Aligned_cols=35 Identities=43% Similarity=0.666 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCH
Q 005305 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332 (703)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 332 (703)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00035 Score=68.65 Aligned_cols=181 Identities=17% Similarity=0.048 Sum_probs=123.6
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CC-hh---hHH
Q 005305 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLC--KN-VI---SWN 402 (703)
Q Consensus 331 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~-~~---~~~ 402 (703)
....+-.....+...|+++.|...++.+++..... ....+..+...|.+.|++++|...|+++.+ |+ .. .|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 44566677778889999999999999998864321 124667888999999999999999999843 22 22 455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHH
Q 005305 403 ALIAGYGNH--------GRGEEAVELFEQMLLNGMRPNHV-TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473 (703)
Q Consensus 403 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 473 (703)
.+...+.+. |+.++|.+.|+++... .|+.. ....+... .. ...... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---------~~~~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---------LRNRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---------HHHHHH---------HHHH
Confidence 555556554 7789999999999875 55542 22111111 00 000010 1122
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCC
Q 005305 474 CMIELLGREGLLDEAFALIRGA----PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532 (703)
Q Consensus 474 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 532 (703)
.+.+.|.+.|++++|...+++. +..| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5667788899999998888764 2223 345788888999999999999988887766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00044 Score=77.61 Aligned_cols=140 Identities=11% Similarity=0.026 Sum_probs=111.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 475 (703)
++..+-.|.....+.|.+++|+.+++...+ +.||. .....+..++.+.+.+++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 467777788888899999999999999888 57877 5677777888999999999999988876 334456677788
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHH
Q 005305 476 IELLGREGLLDEAFALIRGAP-FKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540 (703)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 540 (703)
..++.+.|++++|.++|++.. ..|+ ..+|.++..++...|+.++|..+++++++...+....|+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 888889999999999998853 3444 6688888899999999999999999998766554444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00055 Score=64.79 Aligned_cols=154 Identities=8% Similarity=0.076 Sum_probs=109.4
Q ss_pred HhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHH
Q 005305 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 453 (703)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+.. ..|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777776654443332221 01223566778888888777642 235577888888899999999999
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHH-HHhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 454 EIFQSMSRDHKIKPRAMHYACMIEL-LGREGL--LDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 454 ~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
..|+...+ -.+.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998876 233467777777776 467777 58999999874 4445 56688888888999999999999999999
Q ss_pred CCCCCCcchH
Q 005305 529 GMEPEKLSNY 538 (703)
Q Consensus 529 ~~~p~~~~~~ 538 (703)
++.|.+..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9888765443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.029 Score=58.63 Aligned_cols=439 Identities=13% Similarity=0.110 Sum_probs=241.5
Q ss_pred CcccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 005305 94 SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173 (703)
Q Consensus 94 ~~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 173 (703)
|+.+|+.||...+....+++.+.++++... ++-....|..-+..-.+.++++..+.+|++.+..-+ +...|..-++
T Consensus 19 di~sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHH
Confidence 888999999955666999999999999875 355667788888888899999999999999887643 3445554444
Q ss_pred HHHh-CCChHHHH----HHHcc------CCCCCcccHHHHHHH---------HHhCCChhHHHHHHHHhHHcCCCCChhh
Q 005305 174 MHVR-CGMMIDAR----RLFDE------MPERNLVSCNMIIAG---------MIDSGDYLEAFLLFLDLWEEFSDCGSRT 233 (703)
Q Consensus 174 ~y~~-~g~~~~A~----~~f~~------m~~~d~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p~~~t 233 (703)
---+ .|....++ +.|+- |.-..-..|+..|.- |..+.+.+...++|.++....+.
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~----- 169 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH----- 169 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-----
Confidence 2222 23333221 22221 222333446666543 23344455556666666543211
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC------CCc----------
Q 005305 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE------KTT---------- 297 (703)
Q Consensus 234 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~------~~~---------- 297 (703)
++ ++++..........|..+...++. -+...+..|+++++++.. ++.
T Consensus 170 ------------nl---EkLW~DY~~fE~~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~ 232 (656)
T KOG1914|consen 170 ------------NL---EKLWKDYEAFEQEINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKD 232 (656)
T ss_pred ------------cH---HHHHHHHHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChH
Confidence 11 111111111000111111111111 011223334444433321 011
Q ss_pred -----ccHHHHHHHHHHcCCc--------HHHHHHHHH-HHHCCCCCCHhhH-HHHH----HHHhccCC-------HHHH
Q 005305 298 -----VGWNTIIAGYALHGYS--------EEALDLYYE-MRDSGVKMDHFTF-SMII----RICTRLAS-------LEHA 351 (703)
Q Consensus 298 -----~~~~~li~~~~~~g~~--------~~A~~l~~~-m~~~g~~pd~~t~-~~ll----~a~~~~~~-------~~~a 351 (703)
..|-.+|.-=..++-- ....-.+++ |.-.+..|+..-. +.-+ +.+...|+ -+++
T Consensus 233 e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~ 312 (656)
T KOG1914|consen 233 EIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEA 312 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHH
Confidence 1133333321111100 011111111 1112333332211 1111 11222222 3455
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHhhHHhcC---CHHHHHHHhhhcC---cC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005305 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWG---RIEDARHVFDKML---CK-NVISWNALIAGYGNHGRGEEAVELFEQM 424 (703)
Q Consensus 352 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~---~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 424 (703)
..+++..+..-...+..+|.++.+.--..- ..+.....+++.. .. -..+|-..|..-.+..-...|..+|.+.
T Consensus 313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 556665555333334444444443211111 1333333444332 11 2235667777777777789999999999
Q ss_pred HHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC---CCC
Q 005305 425 LLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF---KTT 500 (703)
Q Consensus 425 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~ 500 (703)
.+.+..+ ......+++.- .-+++.+-|.++|+.=.+.+| -++..-.+.++-+.+.++-..|..+|++... .||
T Consensus 393 R~~~r~~hhVfVa~A~mEy-~cskD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEY-YCSKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred hhccCCcchhhHHHHHHHH-HhcCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 9998888 44555556554 456788999999998776444 4455567888999999999999999998532 333
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC----cchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 501 --KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK----LSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 501 --~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
..+|..+|.--..-|+......+-++....-|.+ ...-..+++.|.-.+.+..-..-++.|
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 4699999999999999999999888776544421 234557788888888777666555555
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.005 Score=60.35 Aligned_cols=337 Identities=9% Similarity=0.000 Sum_probs=191.7
Q ss_pred HHHHhCCChHHHHHHHccCCCCCcccHHHHH---HHHHhCCChhHHHHHHHHhHHcCCCCChhhHH-HHHHHHhcCCChH
Q 005305 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMII---AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA-TMIRASAGLELIS 248 (703)
Q Consensus 173 ~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~ 248 (703)
+.+.-.|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=+...++. +||-..-. .-...+.+.|.++
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHH
Confidence 3344456777777777766666666666554 3455566666666555555442 44422110 1112233445555
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCC
Q 005305 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328 (703)
Q Consensus 249 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 328 (703)
.|..=|+.+++.. |+.. ....++.+.-..++-.. ....+..+..+|+...|+.....+.+- .
T Consensus 124 ~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llEi-~ 185 (504)
T KOG0624|consen 124 QAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLEI-Q 185 (504)
T ss_pred HHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHhc-C
Confidence 5555555555443 1100 01111111111111111 112344556688888898888888875 2
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CChhhHHHHHH
Q 005305 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIA 406 (703)
Q Consensus 329 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~~~~~~~li~ 406 (703)
+.|...+..-..+|...|.+..|..-+..+.+..-+ ++...--+-..+.+.|+.+.++...++..+ ||...
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~------ 258 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL------ 258 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh------
Confidence 456667777777888888888888777777665433 455566677778888999999888888754 43322
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc-----hHHHHHHHHHHHh
Q 005305 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR-----AMHYACMIELLGR 481 (703)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~ 481 (703)
+|..-+...+..+.++.|.+. ...+++.++.+-.+...+ ..|. ...+..+-..|..
T Consensus 259 Cf~~YKklkKv~K~les~e~~----------------ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQA----------------IEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccc
Confidence 122222233334444444331 233444444444444443 1233 1122333445566
Q ss_pred cCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005305 482 EGLLDEAFALIRG-APFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 482 ~g~~~~A~~~~~~-m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 559 (703)
.|++.+|++...+ +.+.|| +.++.--..||.....++.|+.-++++.+.+|+|..+- .| .+.|.++.+
T Consensus 320 d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r---------eG-le~Akrlkk 389 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR---------EG-LERAKRLKK 389 (504)
T ss_pred cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH---------HH-HHHHHHHHH
Confidence 7889999888876 455665 56777777888888899999999999999999875432 22 355555555
Q ss_pred HHHhCC
Q 005305 560 TLRRKG 565 (703)
Q Consensus 560 ~m~~~~ 565 (703)
+..++.
T Consensus 390 qs~kRD 395 (504)
T KOG0624|consen 390 QSGKRD 395 (504)
T ss_pred Hhccch
Confidence 544443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0017 Score=66.10 Aligned_cols=193 Identities=9% Similarity=-0.036 Sum_probs=127.4
Q ss_pred cHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 005305 97 ICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR-SIREVKRVFSYMLSTGFEPDLYMRNRVLLM 174 (703)
Q Consensus 97 ~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~ 174 (703)
+++.+-+ +...++.++|+.++..+.+.. +-+..+|+.--.++...+ +++++...++.+++.. +.+..+|+..-..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3555666 777889999999999998864 334445655555555666 5789999999988765 4555677766555
Q ss_pred HHhCCCh--HHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcC---CC
Q 005305 175 HVRCGMM--IDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL---EL 246 (703)
Q Consensus 175 y~~~g~~--~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---~~ 246 (703)
+.+.|.. +++...++.+.+ +|..+|+...-.+...|+++++++.+.++.+.++. |...|+.....+.+. +.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 6666653 566777766654 56778888888888889999999999999887655 444555444444333 22
Q ss_pred h----HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CCHHHHHHHHhhcCC
Q 005305 247 I----SVGKQLHSCALKMGFGDNVFVSCALIDMYSKC----GSIEDAQGVFDEMSE 294 (703)
Q Consensus 247 ~----~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~----g~~~~A~~~f~~m~~ 294 (703)
. +........+++.. +.|...|+-+...|... ++..+|.+++.+...
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 2 34445554555554 55667777777777662 334556666665543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0003 Score=73.06 Aligned_cols=124 Identities=14% Similarity=0.111 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 511 (703)
.-..+++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+..-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34456677777888999999999998762 254 4456788888888888999988774 3334 555666666678
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
...++++.|..+++++..+.|++..+|..|+.+|.+.|++++|.-.++.++
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999999886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=51.05 Aligned_cols=34 Identities=32% Similarity=0.657 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 005305 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431 (703)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 431 (703)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0015 Score=61.98 Aligned_cols=126 Identities=19% Similarity=0.101 Sum_probs=81.0
Q ss_pred CchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHH
Q 005305 365 LDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVL 440 (703)
Q Consensus 365 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 440 (703)
.|..+.+.++....+.|++..|...|++.. .+|...||.+..+|.+.|+.++|..-|.+..+ +.|+. ..++.+.
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlg 175 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLG 175 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHH
Confidence 355566666666677777777777777663 34566777777777777777777777777666 34443 5566666
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
-.+.-.|+.+.|..++..... .-.-+...-..+.-..+..|++++|.++...
T Consensus 176 ms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 666667777777777766654 2222455555666666677777777766654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00019 Score=63.51 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...+++.++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 345566677777888888888888764 2234 56677788888888899999999999998899998899999999999
Q ss_pred hCCChHHHHHHHHHHHhCC
Q 005305 547 SSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 547 ~~g~~~~A~~~~~~m~~~~ 565 (703)
..|++++|.+.++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 9999999999998877543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0014 Score=67.58 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=68.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH-HHHHHccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCCh
Q 005305 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV-LSACSRSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLL 485 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 485 (703)
+-..|++++|+..++.++.. .||...|..+ ...+...++.++|.+.++.+.. ..|+ ....-.+.++|.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCCh
Confidence 33455555666666555543 4444333332 2445555556666655555544 2233 33344455555555666
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 486 DEAFALIRGAP--FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 486 ~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+|...+++.. .+-|+..|..|..+|...|+..++..+ ....|...|+|++|.......++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHH
Confidence 65555555421 122445555555555555554443332 23344555666666666655554
Q ss_pred C
Q 005305 564 K 564 (703)
Q Consensus 564 ~ 564 (703)
+
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 3
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.2e-05 Score=50.44 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCC
Q 005305 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229 (703)
Q Consensus 196 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 229 (703)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999998887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00066 Score=70.54 Aligned_cols=128 Identities=16% Similarity=0.108 Sum_probs=103.0
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHcc
Q 005305 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRS 446 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~ 446 (703)
....+|+..+...++++.|..+|+++.+.++..+-.|+..+...++-.+|++++++.+.. .| |...+..-...|.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 444556667777899999999999998777777777888888888999999999999874 44 445555555668889
Q ss_pred CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 005305 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499 (703)
Q Consensus 447 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 499 (703)
++.+.|..+.+++.+ -.+.+..+|..|+..|.+.|++++|+..++.+|..|
T Consensus 248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999976 334456799999999999999999999999998644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0034 Score=70.61 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=109.3
Q ss_pred CCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--cC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHH
Q 005305 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKML--CK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLA 438 (703)
Q Consensus 363 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ 438 (703)
+..+...+-.|.......|..++|+.+++... .| ++..+..+...+.+.+++++|+..+++.... .|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45568888899999999999999999999985 34 4557888899999999999999999999984 7776 45556
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
+..++.+.|.+++|..+|+++.. ..+-+...+..+..++-..|+.++|...|++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66778899999999999999987 33344778889999999999999999999875
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0059 Score=69.50 Aligned_cols=235 Identities=15% Similarity=0.086 Sum_probs=145.4
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHh
Q 005305 129 GSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208 (703)
Q Consensus 129 ~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 208 (703)
+...+..|+..+...+++++|.++.+..++.. +.....|-.+...|...++.+++..+ .++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 34566777777777777777777777655542 22223333333355566665555444 22333333
Q ss_pred CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 005305 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 288 (703)
..++.-...+...|... .-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.++
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 33332222333333332 2244567778888888999999999999999887 77889999999999999 99999988
Q ss_pred HhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCch
Q 005305 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH-GFGLDI 367 (703)
Q Consensus 289 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~ 367 (703)
+.+... .|...+++.++.+++.++... .|+.+.+ -.++.+.+... |...-+
T Consensus 172 ~~KAV~-----------~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~ 223 (906)
T PRK14720 172 LKKAIY-----------RFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLV 223 (906)
T ss_pred HHHHHH-----------HHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhH
Confidence 876433 377778899999999988875 3333322 11122222221 233334
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHH
Q 005305 368 VANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYG 409 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 409 (703)
.++-.|-..|-+..+++++..+|..+.+ .|.....-++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4555666677777788888888877743 34445555565554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0035 Score=64.70 Aligned_cols=119 Identities=13% Similarity=0.083 Sum_probs=100.3
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTT-KNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~ 519 (703)
.....|..++|+..++.+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 45567888999999999877 45566777777888999999999999999874 45676 5677888889999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 520 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
|...+.....-+|+|+..|..|+..|...|+..+|.....++.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988887765
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.013 Score=66.94 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=63.6
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHh
Q 005305 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410 (703)
Q Consensus 331 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 410 (703)
+...+..+..+|.+.|..+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++.+.. ..|..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~ 181 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIK 181 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHh
Confidence 33466667777778888888888888888776 44778888888888888 8888887766542 33666
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCH
Q 005305 411 HGRGEEAVELFEQMLLNGMRPNH 433 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~ 433 (703)
.+++.++.++|.++... .|+.
T Consensus 182 ~kq~~~~~e~W~k~~~~--~~~d 202 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY--NSDD 202 (906)
T ss_pred hhcchHHHHHHHHHHhc--Cccc
Confidence 67788888888888773 4443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.9e-05 Score=47.60 Aligned_cols=31 Identities=42% Similarity=0.800 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 429 (703)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888899988999899999988888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.3e-05 Score=47.08 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHhHHcCC
Q 005305 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227 (703)
Q Consensus 197 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 227 (703)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0017 Score=57.29 Aligned_cols=113 Identities=11% Similarity=0.019 Sum_probs=79.7
Q ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005305 420 LFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF 497 (703)
Q Consensus 420 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 497 (703)
+|++... ..|+. .....+...+...|++++|.+.|+.+.. .-+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445544 34443 4455566667778888888888887766 22446677777888888888888888887764 33
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 498 KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 498 ~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
.| +...|..+...+...|+.+.|...+++.++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 33 4567777777888888888888888888888888654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.021 Score=54.43 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=95.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHH----h
Q 005305 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG----R 481 (703)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~ 481 (703)
..|...|++++|++..+... ..+....+ .....+....+-|.+.++.|.. + .+..+.+.|..++. -
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhcc
Confidence 35666677777777665511 11111111 2233455566777777777754 1 23344454444443 3
Q ss_pred cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHH-HHH
Q 005305 482 EGLLDEAFALIRGAP--FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA-EVI 558 (703)
Q Consensus 482 ~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~-~~~ 558 (703)
.+.+.+|.-+|++|. ..|+..+.+....++...|++++|+.+++.++..+|+++.+...++-.--..|+-.++. +.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 456778888888874 36777788888888888899999999999999888888888888877777778776543 444
Q ss_pred HHHH
Q 005305 559 RTLR 562 (703)
Q Consensus 559 ~~m~ 562 (703)
.+++
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 5544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00093 Score=54.06 Aligned_cols=92 Identities=23% Similarity=0.211 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 005305 472 YACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549 (703)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 549 (703)
+..+...+...|++++|.+.+++. ...| +...|..+...+...|+++.|...+++.....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777888888888888764 3333 34567777788888899999999999999888888888889999999999
Q ss_pred ChHHHHHHHHHHHh
Q 005305 550 KLKEAAEVIRTLRR 563 (703)
Q Consensus 550 ~~~~A~~~~~~m~~ 563 (703)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.023 Score=53.78 Aligned_cols=166 Identities=16% Similarity=0.108 Sum_probs=115.7
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI---AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 445 (703)
++.-++-+...+|+.+.|..+++.+..+=+.|+..+. .-+-..|++++|+++++.+++.. +.|.+++..=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3444455556678888888888776433233322221 12445788999999999999864 2345777666666666
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChhHH
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVN---GNLELG 520 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~---g~~~~a 520 (703)
.|.--+|.+-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -..| ++..+..+...+... .+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6777788887777776 57789999999999999999999999888885 2355 444556666555433 367788
Q ss_pred HHHHHHHhCCCCCCcch
Q 005305 521 KFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~ 537 (703)
+..+.+.+++.|.+...
T Consensus 211 rkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHhChHhHHH
Confidence 89999999999965433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0054 Score=54.94 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=28.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
|...+...|++++|...++.. .-.+-.+..+..++++|.+.|++++|...++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333444455555555544332 11222344566777777777777777777654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.01 Score=56.00 Aligned_cols=182 Identities=15% Similarity=0.189 Sum_probs=131.1
Q ss_pred cCCHHHHHHHhhhcCc--------CChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH-HHHHccCCH
Q 005305 380 WGRIEDARHVFDKMLC--------KNVI-SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL-SACSRSGLS 449 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~~--------~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~ 449 (703)
..+.++..+++.++.. ++.. .+..++-+....|+.+.|...++++... + |+..-...+= .-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3577888888887731 2222 3444555667788899999999998875 3 5543222211 123456889
Q ss_pred HHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA--PFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 450 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
++|.++++...++ -+.|..+|.-=+-+.-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|...++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999874 3556667776666676777777887766553 23458889999999999999999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHhCC---ChHHHHHHHHHHHhCC
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSG---KLKEAAEVIRTLRRKG 565 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g---~~~~A~~~~~~m~~~~ 565 (703)
+-..|.++-.+..+++++.-.| +.+-|.+.+.+..+.+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999888888998876665 5566777777776543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00064 Score=51.27 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=51.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+...+...|++++|...++++++..|+++..+..++.++.+.|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44567889999999999999999999999999999999999999999999999887543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0004 Score=53.12 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC-ChHHHHHHHHHHHh
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG-KLKEAAEVIRTLRR 563 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~A~~~~~~m~~ 563 (703)
++.+|..+...+...|++++|+..++++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999 79999999988765
|
... |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.052 Score=51.82 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 448 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
.+.+|.-+|++|.. ..+|+..+.+.+.......|++++|..++++
T Consensus 188 k~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 188 KIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred hhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 34444445554433 2344444444444444444555555544444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.012 Score=52.68 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCch--HHHHHHHHHHHhcCChH
Q 005305 411 HGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA--MHYACMIELLGREGLLD 486 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~ 486 (703)
.++...+...++.+......-.. .....+...+...|++++|...|+.+... ...|.. .....|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 55555565566666554211101 12222334455566666666666666552 211111 12223455555666666
Q ss_pred HHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 487 EAFALIRGAPFK-TTKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 487 ~A~~~~~~m~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
+|+..++..+.. .....+......+...|+.++|+..++++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666554322 12334455555666666666666666554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0027 Score=54.45 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC---cchHHHHHH
Q 005305 472 YACMIELLGREGLLDEAFALIRGAP-FKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK---LSNYVVLLN 543 (703)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 543 (703)
+..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444555555566666655555431 1222 2234445555566666666666666666555553 334566666
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 005305 544 IYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 544 ~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+|.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00028 Score=56.47 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=43.2
Q ss_pred CChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 005305 483 GLLDEAFALIRGAP-FKT---TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558 (703)
Q Consensus 483 g~~~~A~~~~~~m~-~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 558 (703)
|++++|+.+++++. ..| +...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44555555554431 111 233444455555566666666666555 4555555555666678888888888888877
Q ss_pred HH
Q 005305 559 RT 560 (703)
Q Consensus 559 ~~ 560 (703)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.23 Score=50.13 Aligned_cols=240 Identities=17% Similarity=0.140 Sum_probs=149.8
Q ss_pred cCCcHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHH
Q 005305 310 HGYSEEALDLYYEMRDSGVKMDH--FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387 (703)
Q Consensus 310 ~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 387 (703)
.|++++|.+-|+.|... |.. .-+..+.-..-+.|+.+.+.++-+..-..-.. -...+.+.+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 46666666666666542 111 11222222334566666666666555443211 2356667777788888888888
Q ss_pred HHhhhc-----CcCChh--hHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHccCCHHHHHHHH
Q 005305 388 HVFDKM-----LCKNVI--SWNALIAGYGN---HGRGEEAVELFEQMLLNGMRPNHV-TFLAVLSACSRSGLSERGWEIF 456 (703)
Q Consensus 388 ~~f~~m-----~~~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 456 (703)
++.+.- .++|+. .--.|+.+-+. .-+...|...-.+..+ +.||-+ .-.....++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 887754 344443 22233332221 2345556655555444 577763 3334457789999999999999
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhcCChHHH--HH--HHHhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCC
Q 005305 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEA--FA--LIRGAPFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGME 531 (703)
Q Consensus 457 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~~--~~~~m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 531 (703)
+.+-+ ..|.+..+...+ +.|.|+.... .+ -+..| +|| ..+..++..+-...|++..|+...+.+..+.
T Consensus 287 E~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 99966 456666544333 3455643322 11 12233 454 4566677788889999999999999999999
Q ss_pred CCCcchHHHHHHHHHhC-CChHHHHHHHHHHHh
Q 005305 532 PEKLSNYVVLLNIYNSS-GKLKEAAEVIRTLRR 563 (703)
Q Consensus 532 p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~ 563 (703)
|. .+.|..|.++-... |+-.++...+-+..+
T Consensus 360 pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 360 PR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred ch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 98 57899999997655 999998888877654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.011 Score=64.43 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
++..+.++.......|++++|...+++++.++|+ ...|..++.+|...|+.++|.+.+++....+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4455666655555667777777777777777774 56777777777777777777777777665443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.29 Score=49.86 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~ 513 (703)
.+.+..+.-|...|....|.++- +++.+ |+...|...+.+|+..|+|++-.++... +..++-|...+.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~----k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLK----KEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH----HHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 45566677778888888776664 44555 8999999999999999999998887654 2355778899999999
Q ss_pred cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
.|+..+|.....+ ..+.--+.+|.+.|.|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999888776 12356789999999999998875443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0066 Score=51.99 Aligned_cols=99 Identities=11% Similarity=0.003 Sum_probs=50.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHH
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGLLDEAFALIRGAP-FKTT----KNMWAALLTACR 512 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~a~~ 512 (703)
+...+...|++++|...|..+.+...-.| ....+..+...+.+.|++++|.+.+++.. ..|+ ..++..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33444445555555555555543211101 12233445555555566666655555431 1222 334555555666
Q ss_pred HcCChhHHHHHHHHHhCCCCCCcch
Q 005305 513 VNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 513 ~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
..|+.+.|...++++++..|+++..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCChhH
Confidence 6667777777777777666765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.01 Score=59.68 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA-CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357778888888888888889998887542 2233344443333 33356777799999998884 5567778889999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 478 LLGREGLLDEAFALIRGA-PFKTTK----NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+....+.+++.+.-|++. ....+++-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 999999999999999873 323333 4899999999999999999999988888777742 333344433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0047 Score=57.19 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHH
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGA-PFKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 544 (703)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555566666667777777766653 11121 34677777888888888888888888888888888888888888
Q ss_pred HHhCCC
Q 005305 545 YNSSGK 550 (703)
Q Consensus 545 y~~~g~ 550 (703)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0043 Score=57.22 Aligned_cols=94 Identities=14% Similarity=-0.025 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGA-PFKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 542 (703)
....|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|+.++|...+++++.+.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3555666777777888888888888764 22222 347888888999999999999999999999999888888888
Q ss_pred HHHH-------hCCChHHHHHHHHHH
Q 005305 543 NIYN-------SSGKLKEAAEVIRTL 561 (703)
Q Consensus 543 ~~y~-------~~g~~~~A~~~~~~m 561 (703)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888776666554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.013 Score=54.22 Aligned_cols=131 Identities=13% Similarity=0.124 Sum_probs=88.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN--HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 474 (703)
....+..+...|...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+....+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344667777778888889999998888876543332 256777777888888888888888887762 2234555666
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
+...|...|+...+..-++.. ...+++|...++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 667777777666554332221 112577888899999989885 5566666665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.12 Score=55.20 Aligned_cols=182 Identities=19% Similarity=0.220 Sum_probs=100.1
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhh
Q 005305 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334 (703)
Q Consensus 255 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 334 (703)
+.+.+.|-.|+... +.+.++-.|++.+|.++|.+ +|....|+++|.+|+--.
T Consensus 624 ~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD------- 675 (1081)
T KOG1538|consen 624 EERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD------- 675 (1081)
T ss_pred HHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH-------
Confidence 44555665565543 33445556788888877754 555566666666554210
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCH
Q 005305 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414 (703)
Q Consensus 335 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 414 (703)
...-+...|..++-+.+.+.-... ..++.--.+...|+...|+.++|..+ ...+|..
T Consensus 676 ---~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~ 732 (1081)
T KOG1538|consen 676 ---YAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWV 732 (1081)
T ss_pred ---HHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHH
Confidence 112223334433333333222110 01111112344566667877777654 3455655
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
+-+.++-+++-. .+..++..+..-+-+...+..|-++|..|-. ...++++....|++.+|..+-++
T Consensus 733 d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 733 DMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhh
Confidence 666665555432 2334454444445556667778888877743 23577888888999999988888
Q ss_pred CCC-CCCH
Q 005305 495 APF-KTTK 501 (703)
Q Consensus 495 m~~-~p~~ 501 (703)
.|. .||+
T Consensus 799 hPe~~~dV 806 (1081)
T KOG1538|consen 799 HPEFKDDV 806 (1081)
T ss_pred Cccccccc
Confidence 764 4443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0036 Score=65.34 Aligned_cols=105 Identities=15% Similarity=0.013 Sum_probs=83.7
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNL 517 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~ 517 (703)
.......|++++|...|+.+.+ .-+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4556778999999999999987 23445677888888999999999999998874 3445 566788888899999999
Q ss_pred hHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 518 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
++|...++++++++|+++.....+..+..
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999998877666554433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0059 Score=59.25 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=72.0
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCH-HHHHHHHHHHHHcCChhHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTK-NMWAALLTACRVNGNLELG 520 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~-~~~~~ll~a~~~~g~~~~a 520 (703)
..+.+++++|...|...++ -.+-|+..|..=..+|.+.|.++.|.+-.+. +.+.|.. .+|..|..++...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4567788888888888876 2233455555567778888888888877665 4555653 4888899999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHH
Q 005305 521 KFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l 541 (703)
.+.|++.++++|++......|
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHH
Confidence 999999999999986444444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0019 Score=62.56 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=77.2
Q ss_pred HHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHH
Q 005305 477 ELLGREGLLDEAFALIRG-APFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 554 (703)
+-+.+.+++++|+..|.+ +.+.| |.+-|..-..+|.+.|.++.|.+..+..+.++|....+|..|..+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345678999999999987 45555 6677788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 005305 555 AEVIRTLRR 563 (703)
Q Consensus 555 ~~~~~~m~~ 563 (703)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.036 Score=51.06 Aligned_cols=110 Identities=10% Similarity=0.045 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHH
Q 005305 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN--HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475 (703)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 475 (703)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...++...+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34566666777777888888888888776432222 246667777778888888888888777652 22223445555
Q ss_pred HHHHH-------hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 476 IELLG-------REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 476 i~~~~-------~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
...|. +.|++++|... .++|...+++.++.+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 55555 34444443332 345666777788888764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0095 Score=47.89 Aligned_cols=90 Identities=20% Similarity=0.149 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 479 (703)
|..+...+...|++++|+..|++..+. .|+ ...+..+...+...+++++|.+.++...+. .+.+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence 444555666666666666666666553 232 244444555555556666666666555441 122223444444555
Q ss_pred HhcCChHHHHHHHHh
Q 005305 480 GREGLLDEAFALIRG 494 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~ 494 (703)
...|+.++|...+.+
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 555555555544443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0023 Score=49.44 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=51.7
Q ss_pred HHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 508 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...+.+.++++.|..++++++.++|+++..|...+.+|.+.|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567888999999999999999999999999999999999999999999999887654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00086 Score=51.08 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=45.4
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
...|++++|...+++++..+|++...+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999877643
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.016 Score=60.43 Aligned_cols=103 Identities=14% Similarity=0.002 Sum_probs=81.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcC
Q 005305 405 IAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483 (703)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 483 (703)
...+...|++++|+.+|++.++. .|+ ...|..+..++.+.|++++|...++.+.+. -+.+...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 45567789999999999999985 454 577778888999999999999999999872 2345778888999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 005305 484 LLDEAFALIRGA-PFKTTKNMWAALLTAC 511 (703)
Q Consensus 484 ~~~~A~~~~~~m-~~~p~~~~~~~ll~a~ 511 (703)
++++|...|++. ...|+......++.-|
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999874 4566655554444444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.68 Score=47.21 Aligned_cols=105 Identities=12% Similarity=0.156 Sum_probs=72.8
Q ss_pred HhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHH
Q 005305 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 453 (703)
|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... +-.++-|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44455667888888887777778888888888888888888766654332 113366777778888888888887
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 454 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
.+...+ | +..-+.+|.++|++.+|.+.--+.
T Consensus 258 ~yI~k~-------~----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 258 KYIPKI-------P----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHhC-------C----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 776552 1 134567788888888887665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0009 Score=42.68 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=30.6
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005305 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556 (703)
Q Consensus 524 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 556 (703)
++++++++|+++.+|..|+.+|...|++++|.+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.036 Score=49.42 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=74.6
Q ss_pred HHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHH
Q 005305 478 LLGREGLLDEAFALIRGAPF--KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 555 (703)
-+-..|++++|..+|.-+-. .-|..-|..|...|...++++.|...+.....++++|+..+...+.+|...|+.++|.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 34578999999999986422 2356678888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 005305 556 EVIRTLRR 563 (703)
Q Consensus 556 ~~~~~m~~ 563 (703)
+.|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99988764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.036 Score=56.10 Aligned_cols=266 Identities=12% Similarity=0.009 Sum_probs=156.6
Q ss_pred HHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCCH
Q 005305 273 IDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH-FTFSMIIRICTRLASL 348 (703)
Q Consensus 273 i~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~ 348 (703)
.+.+-+..++.+|+..+....+ .++.-|..-...+..-|++++|+--.+.-.+. +|.. .+..-.-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 3455566667777766655433 24445666666666677777766555444332 2221 2333333334444444
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC-----cCChhhHHHH-HHHHHhcCCHHHHHHHHH
Q 005305 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-----CKNVISWNAL-IAGYGNHGRGEEAVELFE 422 (703)
Q Consensus 349 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~~~~~~~~l-i~~~~~~g~~~~A~~l~~ 422 (703)
..|.+.++ +...+ ....|...++.+. +|.-.+|..+ ...+...|++++|...--
T Consensus 134 i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44444333 00000 1112222222221 1222344444 235667788888877766
Q ss_pred HHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHH-------------HHHHHHHHHhcCChHHH
Q 005305 423 QMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH-------------YACMIELLGREGLLDEA 488 (703)
Q Consensus 423 ~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A 488 (703)
..++. .++. .....--.++.-.++.+.+...|++..+ +.|+... +.-=.+...+.|++.+|
T Consensus 194 ~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 194 DILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 65553 2222 1111111234455677888888877654 3344221 11223446688999999
Q ss_pred HHHHHh-CCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 489 FALIRG-APFKT-----TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 489 ~~~~~~-m~~~p-----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.+.+.+ +.+.| +...|........+.|+.++|....+++++++|.-+..|..-++++...++|++|.+-+++..
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999976 44444 455666666677889999999999999999999988899999999999999999999998876
Q ss_pred hCC
Q 005305 563 RKG 565 (703)
Q Consensus 563 ~~~ 565 (703)
+..
T Consensus 349 q~~ 351 (486)
T KOG0550|consen 349 QLE 351 (486)
T ss_pred hhc
Confidence 543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.021 Score=59.86 Aligned_cols=80 Identities=9% Similarity=-0.065 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC
Q 005305 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279 (703)
Q Consensus 200 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 279 (703)
.++|+.|.+.|..+++++++..=..-|+-||.+||+.++..+.+.|++..|.++...|...+...+..++.--+..+.+.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 35555555555555555555555555566666666666666666666666655555555554444444433333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.021 Score=46.99 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHccC--------CHHHHHHHHHHhHhhcCCCCchHH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGM-RPNHVTFLAVLSACSRSG--------LSERGWEIFQSMSRDHKIKPRAMH 471 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 471 (703)
-...|..+...|++...-.+|+.+++.|+ -|...+|+.+|.+..+.. .+-+.+.+++.|.. .+++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHH
Confidence 34456666677999999999999999999 899999999998876643 24467788888887 689999999
Q ss_pred HHHHHHHHHh
Q 005305 472 YACMIELLGR 481 (703)
Q Consensus 472 ~~~li~~~~~ 481 (703)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0038 Score=49.83 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=46.8
Q ss_pred cCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 005305 411 HGRGEEAVELFEQMLLNGMR-PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (703)
+|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++.. + .+. .+......+...|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~-~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-K-LDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-T-HHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-C-CCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 56777777777777765321 23444445667777777777777777662 2 111 12233334466667777777777
Q ss_pred HHHHh
Q 005305 490 ALIRG 494 (703)
Q Consensus 490 ~~~~~ 494 (703)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.037 Score=54.14 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=84.8
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc---CChhHHHHHHHHHhCCCCCCcchHH
Q 005305 465 IKPRAMHYACMIELLGREGLLDEAFALIRGA-PFK-TTKNMWAALLTACRVN---GNLELGKFAAEKLYGMEPEKLSNYV 539 (703)
Q Consensus 465 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 539 (703)
-+-|.+.|--|...|.+.|+.+.|..-|.+. ... +++..+..+..++... ....++..++++++..+|+|+.+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3567889999999999999999999998874 333 4566677777666433 3567889999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 540 VLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 540 ~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
.|+-.+...|++.+|...++.|.+...
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999997654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.19 Score=50.68 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=62.7
Q ss_pred HHHHhhHHhc-CCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CcCH-H
Q 005305 371 SALVDFYSKW-GRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLNGM-----RPNH-V 434 (703)
Q Consensus 371 ~~Li~~y~k~-g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~-~ 434 (703)
..+..+|-+. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-. +++. .
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3344455555 666666666665521 11 12344556667777777777777777665322 1222 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhh-cCCCCc--hHHHHHHHHHHHh--cCChHHHHHHHHhCC
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRD-HKIKPR--AMHYACMIELLGR--EGLLDEAFALIRGAP 496 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 496 (703)
.|...+-.+...|+...|.+.|+..... .++..+ ......|++++-. ...+++|..-|+++.
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2233333455567777777777766431 122222 2334445555542 245556666666653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.24 Score=44.72 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=98.5
Q ss_pred CCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-----CCCHH
Q 005305 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-----KTTKN 502 (703)
Q Consensus 429 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~~~ 502 (703)
..|+...-..+..+....|+..+|...|++... .-+.-|....-.+..+....++..+|...++.+ .. .||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 467776677788888888999999888888876 345556667777777777888888888888774 22 3443
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
-..+...+...|..+.|+..++.++..-|+ +..-.....++.++|+.++|..-+....
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 345567788899999999999999988887 6666777888999999988876555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.19 Score=49.18 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=35.5
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCccc------HHHHHHHHHHcCCcHHHHHHHHHHHHC
Q 005305 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVG------WNTIIAGYALHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 272 Li~~y~~~g~~~~A~~~f~~m~~~~~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~ 326 (703)
....+.+.|++++|.+.|+.+....+.+ .-.+..+|.+.+++++|...|++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444556778888888887776532221 123455667788888888888877765
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0052 Score=46.19 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=43.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 475 MIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677788888888888774 3345 445777777888888888888888888888888763
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.048 Score=50.78 Aligned_cols=105 Identities=27% Similarity=0.333 Sum_probs=72.3
Q ss_pred CCCHhhHHHHHHHHhc-----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHH
Q 005305 329 KMDHFTFSMIIRICTR-----LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403 (703)
Q Consensus 329 ~pd~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~ 403 (703)
..|..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- .+| .+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------p~n--~fQ~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------PRN--FFQA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------ccc--HHHH
Confidence 4466666666666643 45666677777888888999999999999987665 2221 111 1111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCC
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 448 (703)
+..-| ..+.+-|++++++|...|+.||..|+..++..+.+.+.
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11112 23456799999999999999999999999999887764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.61 E-value=1.1 Score=46.39 Aligned_cols=423 Identities=14% Similarity=0.056 Sum_probs=216.7
Q ss_pred hhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH---HHhcCChhHHHHHHHHHHHc--CCCCC-----
Q 005305 59 CCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK---LVLNKRYREALELFEILEFE--GGFDV----- 128 (703)
Q Consensus 59 ~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~---~~~~g~~~~A~~l~~~m~~~--~~~~p----- 128 (703)
-...+.++++|.. .+++.- .....+..+..|... |-.+.. .-+.+.+.+|++.|...... +.-+|
T Consensus 46 Evl~grilnAffl-~nld~M---e~~l~~l~~~~~~s~-~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n 120 (549)
T PF07079_consen 46 EVLGGRILNAFFL-NNLDLM---EKQLMELRQQFGKSA-YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN 120 (549)
T ss_pred HHHhhHHHHHHHH-hhHHHH---HHHHHHHHHhcCCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh
Confidence 4566778888887 666666 455555555444333 444443 56788899999988877654 31111
Q ss_pred ------ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC----CCcchHHHHHHHHHhCCChHHHHHHHccCCCCCccc
Q 005305 129 ------GSSTYDALISACIGLRSIREVKRVFSYMLSTGFE----PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS 198 (703)
Q Consensus 129 ------~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~----~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~ 198 (703)
|-.-=+..+.++...|++.+|+.++..++..=++ -+..+||.++-++++.=-++. -+.+...=..-
T Consensus 121 i~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pd 196 (549)
T PF07079_consen 121 IQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPD 196 (549)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChH
Confidence 1111234456677889999999999888775443 678889988888876422221 11222211223
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcC--CChHHHHHHHHHHHHhCCCCc-HHHHHHHHHH
Q 005305 199 CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL--ELISVGKQLHSCALKMGFGDN-VFVSCALIDM 275 (703)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~ 275 (703)
|--||-.|.+.=..-++ -.-..+.|....+..++....-. ..+..-.+++..-.+.-+.|+ ..+...|+.-
T Consensus 197 yYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~ 270 (549)
T PF07079_consen 197 YYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQ 270 (549)
T ss_pred HHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence 55566665543211111 00011233333344444333222 122223333333333334444 2344455555
Q ss_pred HHhCCCHHHHHHHHhhcC--------CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHH-------HHHH
Q 005305 276 YSKCGSIEDAQGVFDEMS--------EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS-------MIIR 340 (703)
Q Consensus 276 y~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-------~ll~ 340 (703)
+.+ +.+++..+-+.+. ++=+.++..++...++.++..+|.+.+.-+... .|+...-. .+-+
T Consensus 271 f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~ 346 (549)
T PF07079_consen 271 FMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQD 346 (549)
T ss_pred Hhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHH
Confidence 544 3444444433332 223446778888888888888888877766543 33332110 0111
Q ss_pred HHh-cc---CCHHHHHHHHHHHHHcCCCCchHHHHHHH---hhHHhcCC-HHHHHHHhhhcC---cCChhhHHHHH----
Q 005305 341 ICT-RL---ASLEHAKQAHAGLVRHGFGLDIVANSALV---DFYSKWGR-IEDARHVFDKML---CKNVISWNALI---- 405 (703)
Q Consensus 341 a~~-~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~Li---~~y~k~g~-~~~A~~~f~~m~---~~~~~~~~~li---- 405 (703)
..+ .- .++..-..++..+...+++.. ....-|+ .-+-+.|. -++|.++++.+. .-|...-|.+.
T Consensus 347 Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvK 425 (549)
T PF07079_consen 347 IVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVK 425 (549)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 111 11 112222333444443333221 1111122 22334444 677777777663 34444444332
Q ss_pred HHHHhc---CCHHHHHHHHHHHHHcCCCcCHH----HHHHHHHH--HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHH
Q 005305 406 AGYGNH---GRGEEAVELFEQMLLNGMRPNHV----TFLAVLSA--CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476 (703)
Q Consensus 406 ~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 476 (703)
..|.+. .....-+.+-+-..+.|+.|-.+ .-+.+..| ....|++.++.-+-.-+. .+.|++.+|..+.
T Consensus 426 q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlG 502 (549)
T PF07079_consen 426 QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLG 502 (549)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHH
Confidence 123221 11233333334444567766332 22333333 345677777665544443 4778888888777
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005305 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAA 506 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 506 (703)
-.+....+++||.+.+..+| |+..+|++
T Consensus 503 l~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 503 LCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 77778888888888888876 45555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.03 Score=56.32 Aligned_cols=126 Identities=14% Similarity=0.139 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhH
Q 005305 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI-CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377 (703)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 377 (703)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555665556666666666666665332 1122222222222 22234555566666666654 344566666666666
Q ss_pred HhcCCHHHHHHHhhhcCcC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 378 SKWGRIEDARHVFDKMLCK------NVISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 378 ~k~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777777777666321 223566666666666666666666666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.018 Score=53.57 Aligned_cols=98 Identities=13% Similarity=0.259 Sum_probs=74.7
Q ss_pred HHHhhhc--CcCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc-------------
Q 005305 387 RHVFDKM--LCKNVISWNALIAGYGN-----HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS------------- 446 (703)
Q Consensus 387 ~~~f~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 446 (703)
...|+.. ..+|-.+|..+|..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 45677777777777764 366666777788888888888888888888876442
Q ss_pred ---CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCCh
Q 005305 447 ---GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485 (703)
Q Consensus 447 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 485 (703)
.+.+-|..++++|.. +|+.||.+++..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 234568999999988 89999999999999999877654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.051 Score=59.39 Aligned_cols=141 Identities=14% Similarity=0.083 Sum_probs=102.5
Q ss_pred CcCChhhHHHHHHHHHhc--C---CHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHh
Q 005305 394 LCKNVISWNALIAGYGNH--G---RGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRS--------GLSERGWEIFQSM 459 (703)
Q Consensus 394 ~~~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m 459 (703)
...|...|...+.+.... + ...+|..+|++.++ ..||. ..+..+..++... .++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 456888999999886542 2 37789999999998 57876 4555444433221 1223344444433
Q ss_pred HhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 460 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
........+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 221123445577887777777789999999999984 56788889999999999999999999999999999999774
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.03 Score=58.74 Aligned_cols=119 Identities=9% Similarity=0.025 Sum_probs=69.4
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC----CCcccH
Q 005305 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMG--FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE----KTTVGW 300 (703)
Q Consensus 227 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~ 300 (703)
...+...+..+++.+....+++.++.++-...... ...-..+..++|..|.+.|..+.+..++..=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 33455566666666666666666666655554431 112223344666666666666666666654332 466666
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 005305 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345 (703)
Q Consensus 301 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 345 (703)
|.+|..+.+.|++..|.++..+|...+...++.|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666665556666666555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.045 Score=45.12 Aligned_cols=79 Identities=8% Similarity=0.041 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHhccC--------CHHHHHHHHHHHHHcCCCCchHHHH
Q 005305 301 NTIIAGYALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLA--------SLEHAKQAHAGLVRHGFGLDIVANS 371 (703)
Q Consensus 301 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 371 (703)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.++..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666777999999999999999999 999999999998876543 2445677888888888999999999
Q ss_pred HHHhhHHh
Q 005305 372 ALVDFYSK 379 (703)
Q Consensus 372 ~Li~~y~k 379 (703)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877665
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.076 Score=47.16 Aligned_cols=85 Identities=13% Similarity=0.057 Sum_probs=37.6
Q ss_pred HHHHhCCChhHHHHHHHHhHHcCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCH
Q 005305 204 AGMIDSGDYLEAFLLFLDLWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282 (703)
Q Consensus 204 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 282 (703)
.-+.+.|++++|..+|+-+..- .| +..-|-.|...|-..|++++|...+..+.... +.|+..+-.+...|.+.|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 3344445555555555444332 12 12223333333334444444444444444443 33444444445555555555
Q ss_pred HHHHHHHhh
Q 005305 283 EDAQGVFDE 291 (703)
Q Consensus 283 ~~A~~~f~~ 291 (703)
+.|++.|+.
T Consensus 120 ~~A~~aF~~ 128 (157)
T PRK15363 120 CYAIKALKA 128 (157)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.088 Score=44.93 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=66.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHH
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLG 480 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 480 (703)
+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+|+....++.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677889999999999999998876553 5677778889999999999999998877432111 2222233445677
Q ss_pred hcCChHHHHHHHHh
Q 005305 481 REGLLDEAFALIRG 494 (703)
Q Consensus 481 ~~g~~~~A~~~~~~ 494 (703)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999887644
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=2 Score=46.78 Aligned_cols=199 Identities=13% Similarity=0.134 Sum_probs=106.5
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHHh-CCC--------CCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcc
Q 005305 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLST-GFE--------PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197 (703)
Q Consensus 127 ~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~-g~~--------~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~ 197 (703)
.|....|..+.......-+++.|++.|-..... |+. .+.....+=+.+| .|++++|++++-+|..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 467777777776666555666666665443221 110 0011111112222 4788888888888877775
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 005305 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273 (703)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 273 (703)
-|..+.+.|++-...++++. .|-..| ...|..+...++....+++|.+++..--. ...++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 35566677777666665532 111111 23566666666666666666666543211 11244
Q ss_pred HHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 005305 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353 (703)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 353 (703)
++|.+..++++-+.+-..+++ |....-.|...+...|.-++|.+.|-+- + .| ...+..|..++++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554 3334555666677777777776665332 1 11 123455666666655554
Q ss_pred H
Q 005305 354 A 354 (703)
Q Consensus 354 ~ 354 (703)
+
T Consensus 900 l 900 (1189)
T KOG2041|consen 900 L 900 (1189)
T ss_pred H
Confidence 4
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.4 Score=44.79 Aligned_cols=285 Identities=14% Similarity=0.091 Sum_probs=168.5
Q ss_pred cHHHHHHHHHh--CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHh--cCCChHHHHHHHHHHHHhCCCCcHHH--HHH
Q 005305 198 SCNMIIAGMID--SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA--GLELISVGKQLHSCALKMGFGDNVFV--SCA 271 (703)
Q Consensus 198 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 271 (703)
.|.+|-.|+.- .|+-..|.++-.+-.+. +..|...+..++.+-. -.|+++.+++-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 34445445443 35555555554443211 3446666666665543 347788888888777642 22221 112
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCC-CCCCHh--hHHHHHHHHhc-
Q 005305 272 LIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSG-VKMDHF--TFSMIIRICTR- 344 (703)
Q Consensus 272 Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~--t~~~ll~a~~~- 344 (703)
|.----+.|..+.|...-++.-.. -.-.|.+.+...++.|+++.|+++++.-++.. +.+|.. .-..++.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 222223567777777766655432 23467888888999999999999988765532 344433 22333333221
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCchHH-HHHHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHHH
Q 005305 345 --LASLEHAKQAHAGLVRHGFGLDIVA-NSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVE 419 (703)
Q Consensus 345 --~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~ 419 (703)
..+...++..-.+..|. .||..- .-.-...|.+.|++.++-.+++.+= +|.+..|.. -.+++.|+ .++.
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHH
Confidence 23455666655555553 343221 2223467888999999999998883 344443332 22344444 4444
Q ss_pred HHHHHHH-cCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh-cCChHHHHHHHHhC
Q 005305 420 LFEQMLL-NGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR-EGLLDEAFALIRGA 495 (703)
Q Consensus 420 l~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m 495 (703)
-+++... ..++||. .....+..+-...|++..|+.--+... ...|....|..|.+.-.- .|+-.++...+.+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 4444432 2367766 667777788888888888877666554 367888888888887654 48888888888764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.017 Score=60.04 Aligned_cols=63 Identities=17% Similarity=0.054 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch---HHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN---YVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 501 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
...|..+..++...|++++|...++++++++|++..+ |..++.+|...|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666665432 56666666666666666666655554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.081 Score=45.16 Aligned_cols=90 Identities=17% Similarity=-0.004 Sum_probs=48.3
Q ss_pred HHHHHhCCChhHHHHHHHHhHHcCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHH
Q 005305 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCG--SRTFATMIRASAGLELISVGKQLHSCALKMGFGD---NVFVSCALIDMYS 277 (703)
Q Consensus 203 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~ 277 (703)
..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++...... +. +..+...+...+.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 3455566777777777777766665543 2244455556666666666666666655432 11 2222222333444
Q ss_pred hCCCHHHHHHHHhhcC
Q 005305 278 KCGSIEDAQGVFDEMS 293 (703)
Q Consensus 278 ~~g~~~~A~~~f~~m~ 293 (703)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555554433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.63 Score=42.17 Aligned_cols=126 Identities=10% Similarity=0.030 Sum_probs=77.0
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-----CChhhHHH
Q 005305 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-----KNVISWNA 403 (703)
Q Consensus 329 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~~~~~~~ 403 (703)
.|+...-..+..+....|+..+|...|++...--+.-|..+.-.+.++....++...|...++.+.+ +.+..--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555666777777777777777777777655566777777777777777777777777776632 12233344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 456 (703)
+...|...|.+.+|..-|+..... -|+...-.....-+.+.|..+++..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 556677777777777777777764 444322222222334555555444333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.24 E-value=2.9 Score=47.13 Aligned_cols=488 Identities=15% Similarity=0.096 Sum_probs=254.0
Q ss_pred cCCCCcccchhhcccccCccCCCC-CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChH
Q 005305 70 PKPNKIYTEELKESSLPDTQMKKP-SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147 (703)
Q Consensus 70 ~k~~~~~~aa~~~~~f~~~~~~~p-~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~ 147 (703)
.|.|+.++| ..+++.....++ |..+..++-. |...++.++|..+|+...... |+......+..++.+.+++.
T Consensus 54 ~r~gk~~ea---~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 54 FRLGKGDEA---LKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHhcCchhH---HHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHH
Confidence 345888888 888876654433 6667788888 999999999999999998754 77888888899999988877
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHhCC----------ChHHHHHHHccCCCCC--cccHH---HHHHHHHhCCCh
Q 005305 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG----------MMIDARRLFDEMPERN--LVSCN---MIIAGMIDSGDY 212 (703)
Q Consensus 148 ~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g----------~~~~A~~~f~~m~~~d--~~~~~---~li~~~~~~g~~ 212 (703)
+-.+.--++-+ .++.+.+.+-+++..+...- -+.-|.+.++.+.+.+ ..+-. .-...+...|.+
T Consensus 128 ~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~ 206 (932)
T KOG2053|consen 128 KQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY 206 (932)
T ss_pred HHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence 66555555554 34666777766776665431 1334666777666544 11111 112233457889
Q ss_pred hHHHHHH-HHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHH---------------
Q 005305 213 LEAFLLF-LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY--------------- 276 (703)
Q Consensus 213 ~~A~~~~-~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y--------------- 276 (703)
++|++++ ....+.-...+...-+--+..+...+++.+..++-.+++..|- .| |...++.+
T Consensus 207 ~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~-Dd---y~~~~~sv~klLe~~~~~~a~~~ 282 (932)
T KOG2053|consen 207 QEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN-DD---YKIYTDSVFKLLELLNKEPAEAA 282 (932)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC-cc---hHHHHHHHHHHHHhcccccchhh
Confidence 9999998 4444433333444555566777788889998898888888872 22 22222222
Q ss_pred -HhCCCHHHHHHHHhhcCC-CCcccHHHHHHHHH---HcCCcHHHHHHHHHHHHCCCCC----C---------HhhHHHH
Q 005305 277 -SKCGSIEDAQGVFDEMSE-KTTVGWNTIIAGYA---LHGYSEEALDLYYEMRDSGVKM----D---------HFTFSMI 338 (703)
Q Consensus 277 -~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p----d---------~~t~~~l 338 (703)
...+.++...+..++... +..-.|-+-+..+. .-|+.++++..|-+ .-|-+| | ......+
T Consensus 283 ~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kpcc~~Dl~~yl~~l~~~q~~~l 360 (932)
T KOG2053|consen 283 HSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKPCCAIDLNHYLGHLNIDQLKSL 360 (932)
T ss_pred hhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCcHhHhhHHHhhccCCHHHHHHH
Confidence 222333333333333222 12223444444433 45778887655533 222222 1 1111223
Q ss_pred HHHHhccC-CHHH---HHHHHHHHHH----cC----CCCch-H-HHHHHHhhHHhcCCHHHHHHHh-hhcCcCC---hhh
Q 005305 339 IRICTRLA-SLEH---AKQAHAGLVR----HG----FGLDI-V-ANSALVDFYSKWGRIEDARHVF-DKMLCKN---VIS 400 (703)
Q Consensus 339 l~a~~~~~-~~~~---a~~~~~~~~~----~g----~~~~~-~-~~~~Li~~y~k~g~~~~A~~~f-~~m~~~~---~~~ 400 (703)
+..+.... +... +.+.|-.+++ .| ++.|. . .+..++-.|.+. ++-...++ .++..-+ .-+
T Consensus 361 ~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g--ls~~K~ll~TE~~~g~~~llLa 438 (932)
T KOG2053|consen 361 MSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG--LSLSKDLLPTEYSFGDELLLLA 438 (932)
T ss_pred HHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc--ccccccccccccccHHHHHHHH
Confidence 33322111 1111 1111111111 01 11110 0 011111112111 00000000 0000001 124
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 401 WNALIAGYGNHGRGE---EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 401 ~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
-|.|+..+-+.++.. +|+-+++.-... -.-|..+-..++..|+-.|-+..|.+.|..+.- ..|..|...|- +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HHhhhccchHH-HHH
Confidence 567778888877744 455555554443 122445666677888888888888888888754 35655544432 234
Q ss_pred HHHhcCChHHHHHHHHhCC-C-CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC----CcchHHHHHHHHHhCCC
Q 005305 478 LLGREGLLDEAFALIRGAP-F-KTTK-NMWAALLTACRVNGNLELGKFAAEKLYGMEPE----KLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m~-~-~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~ 550 (703)
-+.-.|++..+...++... + ..+. .+-.....|| ++|.+..-.+...---.+.-. -..+-...++.....++
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4555677777766665421 1 0010 1111222333 455555443322111111111 11223456777888899
Q ss_pred hHHHHHHHHHHHhCCCccCCceeEEEEC
Q 005305 551 LKEAAEVIRTLRRKGLRMLPACSWIEVK 578 (703)
Q Consensus 551 ~~~A~~~~~~m~~~~~~~~~~~s~~~~~ 578 (703)
.++-.+.+..|.-.. .+....|.++.
T Consensus 595 ~~q~~~~~~~~~l~~--~e~~I~w~~L~ 620 (932)
T KOG2053|consen 595 GTQLLKLLESMKLPP--SEDRIQWVSLS 620 (932)
T ss_pred HHHHHHHHhccccCc--chhhccccccc
Confidence 998888888876111 12234676554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.37 Score=49.63 Aligned_cols=160 Identities=17% Similarity=0.101 Sum_probs=98.0
Q ss_pred HHHhhHHhcCCHHHHHHHhhhcCcC---Chh----hHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005305 372 ALVDFYSKWGRIEDARHVFDKMLCK---NVI----SWNALIAGYGN---HGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441 (703)
Q Consensus 372 ~Li~~y~k~g~~~~A~~~f~~m~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 441 (703)
.|+-.|....+++...++.+.+... ++. .--...-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777888888888777432 111 11123334555 6888888888888666656677777766665
Q ss_pred HHHc---------cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHH----HHHHH---Hh-C---C---CC
Q 005305 442 ACSR---------SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE----AFALI---RG-A---P---FK 498 (703)
Q Consensus 442 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~---~~-m---~---~~ 498 (703)
.|-. ...+++|...|.+. +.+.|+..+--.++.++...|...+ ..++- .. . + ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4421 22466777777655 4455665443334444444553222 22222 11 1 1 12
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 499 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
.|--.+.+++.++.-.|+.+.|.+++++++.+.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344456799999999999999999999999998764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.34 Score=46.24 Aligned_cols=169 Identities=12% Similarity=0.058 Sum_probs=110.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC--CC--------cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHH
Q 005305 269 SCALIDMYSKCGSIEDAQGVFDEMSE--KT--------TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338 (703)
Q Consensus 269 ~~~Li~~y~~~g~~~~A~~~f~~m~~--~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 338 (703)
+++|...|.-..-+++-...|+.=.. .. ....+.++..+...|.+.-.+.++++.++...+.++...+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45566655554445544444443222 11 223455666666778888888888888887666677777778
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcC-----CCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHh
Q 005305 339 IRICTRLASLEHAKQAHAGLVRHG-----FGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGN 410 (703)
Q Consensus 339 l~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 410 (703)
.+.-.+.|+.+.+...++.+.+.. ......+.......|.-.++...|...|++++. .|++.-|.=.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888888899999998888776643 333334444444556667888888888888764 345555554444555
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005305 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAV 439 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 439 (703)
.|+..+|++..+.|++. .|...+-+++
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 68888999999998874 5555444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.4 Score=45.84 Aligned_cols=163 Identities=9% Similarity=-0.027 Sum_probs=95.4
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcC--cCChh--------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKML--CKNVI--------SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 439 (703)
+++|+..|.-..-+++-...|+.-. +..+. .-+.++..+.-.|.+.-.+.++++.++...+-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 5666666665555555555554332 22222 3355666666677888888999999887656677778888
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHH-----HHHHHhcCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHH
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM-----IELLGREGLLDEAFALIRGAPF-KT-TKNMWAALLTACR 512 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~a~~ 512 (703)
.+.-.+.|+.+.|..+|+...+..+ ..+....+.+ ...|.-+.++.+|...+.+++. .| |+...+.-.-...
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888899999999999997766322 1222222222 2334445566666666655543 11 2222232222223
Q ss_pred HcCChhHHHHHHHHHhCCCCC
Q 005305 513 VNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 513 ~~g~~~~a~~~~~~~~~~~p~ 533 (703)
-.|+...|....+.+.+..|.
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCc
Confidence 445556666666666666665
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0085 Score=45.63 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHhCCCC
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRG-APFKT-TKNMWAALLTACRVNG-NLELGKFAAEKLYGMEP 532 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p 532 (703)
+..|..+...+.+.|++++|+..|++ +...| +...|..+..++...| ++++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45666777777777777777777766 33344 3457777777777887 68888888888877776
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=2.6 Score=45.96 Aligned_cols=231 Identities=16% Similarity=0.057 Sum_probs=122.4
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHccCCC-CCccc------------HHHHHHHHHhCCChhHHHHHHHHhHHcCCC
Q 005305 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVS------------CNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228 (703)
Q Consensus 162 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~d~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 228 (703)
.|.+..|..|.......-.++.|+..|-+... +.+.. -.+=|.+ --|++++|.++|-+|-++.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 57778888887777777778888887766543 22211 0111222 23778888888777754321
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CC-c---HHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHH
Q 005305 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGF-GD-N---VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303 (703)
Q Consensus 229 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~-~---~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 303 (703)
.+...-+.||+-...+++ +.|- .. | ...++.+.+.++....+++|.+.|..-... ...
T Consensus 766 --------Aielr~klgDwfrV~qL~----r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~ 828 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLI----RNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQ 828 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHH----HccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhH
Confidence 233344455554444433 2221 11 1 234555666666555666666655543211 123
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCH
Q 005305 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383 (703)
Q Consensus 304 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 383 (703)
+.++.+..++++-..+-+ .++-|...+-.+..++.+.|.-++|.+.|-. .+.+ .+.++.+...+++
T Consensus 829 ~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHH
Confidence 334444333333332222 2344555666677778888887777665532 2221 2345556667778
Q ss_pred HHHHHHhhhcCcCChhhHHH--------------HHHHHHhcCCHHHHHHHHHHHHH
Q 005305 384 EDARHVFDKMLCKNVISWNA--------------LIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 384 ~~A~~~f~~m~~~~~~~~~~--------------li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.+|.++-+...-|.+.+.-+ -|.-+.+.|+.-+|-+++.+|-+
T Consensus 895 ~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 895 GEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 78877776665454433211 13345556666666666666654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.13 Score=51.86 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHc---CCCcCH--HHHHHHHHHHHcc-CCHHHHHHHHHHhHhhcCCCCc----hHHHHHHHHHHHhc
Q 005305 413 RGEEAVELFEQMLLN---GMRPNH--VTFLAVLSACSRS-GLSERGWEIFQSMSRDHKIKPR----AMHYACMIELLGRE 482 (703)
Q Consensus 413 ~~~~A~~l~~~m~~~---g~~p~~--~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~ 482 (703)
++++|+..+++..+. .-.|+. ..+..+...|... |++++|.+.|+...+-+..... ...+..+...+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 555555555544331 112222 3444555567777 8888888888877653322222 34556677888899
Q ss_pred CChHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 483 GLLDEAFALIRGAP---F-----KTTKN-MWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 483 g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
|++++|.++|++.. . +.+.. .+...+-.+...||...|...+++..+.+|.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999987642 1 11111 2222333455678888888888888888875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.52 Score=50.59 Aligned_cols=232 Identities=17% Similarity=0.151 Sum_probs=116.5
Q ss_pred cHHHHHH-HHhcCChhHHHHH---------HHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHH--HHHHHHHhCCCCC
Q 005305 97 ICSQIEK-LVLNKRYREALEL---------FEILEFEGGFDVGSSTYDALISACIGLRSIREVKR--VFSYMLSTGFEPD 164 (703)
Q Consensus 97 ~~~~li~-~~~~g~~~~A~~l---------~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~--l~~~~~~~g~~~~ 164 (703)
.+.+-+- |...|.+++|..+ ++.+... ..+.--++..-++|.+.++..--+- -++.+.++|-.|+
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 3444555 7777877777653 1111111 1233345555566666666543332 2345566675566
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcC
Q 005305 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244 (703)
Q Consensus 165 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 244 (703)
... +.+.++-.|.+.+|.++|. ++|.-..|+++|.+|+-- -..+-+...
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMF----------D~aQE~~~~ 683 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMF----------DYAQEFLGS 683 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHH----------HHHHHHhhc
Confidence 543 4455666788999988885 456666777777766421 112233334
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 245 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
|+-++-+.+.+.-... ..++.--.+-..++...|+.++|..+.- .+|-.+-+.++-+++-
T Consensus 684 g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~------------------d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICG------------------DHGWVDMLIDIARKLD 743 (1081)
T ss_pred CChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhh------------------cccHHHHHHHHHhhcc
Confidence 4444433332211110 0111111123344455566666554432 2222233333333322
Q ss_pred HCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc
Q 005305 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395 (703)
Q Consensus 325 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 395 (703)
. .+..++..+..-+-+...+..|.++|..+-. ..+++++....+++++|..+-++.++
T Consensus 744 ~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 744 K----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred h----hhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 1 1233344444444455556666666665532 23567777777888888877777764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.91 E-value=2.6 Score=43.70 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=67.2
Q ss_pred cccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 005305 82 ESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160 (703)
Q Consensus 82 ~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g 160 (703)
.++-+++.+.+.|..+|-.+|. +..++..++..+++++|... ++-=...|..-+++-...++++..+.+|.+.++..
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 4444555554447889999999 99999999999999999764 34445667777777777789999999999998765
Q ss_pred CCCCcchHHHHHHHHHh
Q 005305 161 FEPDLYMRNRVLLMHVR 177 (703)
Q Consensus 161 ~~~~~~~~~~Li~~y~~ 177 (703)
+. ...|..-++---+
T Consensus 107 l~--ldLW~lYl~YIRr 121 (660)
T COG5107 107 LN--LDLWMLYLEYIRR 121 (660)
T ss_pred cc--HhHHHHHHHHHHh
Confidence 44 5556555544333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.032 Score=42.22 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
.|++++|.++|+.+... .+-+...+..++..|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444431 1223344444445555555555555555443
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.87 E-value=3.8 Score=45.31 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=85.3
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 005305 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509 (703)
Q Consensus 430 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 509 (703)
.-...|.+-.+.-+...|+..+|.++-... .+ ||...|..-+.+++..+++++-+++-+++. .+.-|.-...
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----ki-pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KI-PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhc----CC-cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 344455666677778888888888775544 33 788888888899999999999888877764 2455666788
Q ss_pred HHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 510 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
+|.+.|+.++|...+-+.-+ +.-.+.+|.+.|++.+|.++--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999998887665432 22577889999999998886533
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.86 E-value=3.8 Score=45.26 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=68.1
Q ss_pred HhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHH
Q 005305 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 453 (703)
+.-+...|+..+|.++-.+..-||-..|-.=+.+++..+++++-+++-+.+.. +.-|.-...+|.+.|+.++|.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHh
Confidence 33445567777788777777777777777777777777777766655554431 344555667788888888887
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 005305 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492 (703)
Q Consensus 454 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 492 (703)
.++.+.. |.. -.+.+|.++|++.+|.++-
T Consensus 765 KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 765 KYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence 7765442 111 4567777788877777654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.012 Score=40.13 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHH
Q 005305 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543 (703)
Q Consensus 502 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 543 (703)
.+|..+..++...|++++|+..++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788889999999999999999999999999888877654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=2 Score=42.06 Aligned_cols=194 Identities=10% Similarity=-0.005 Sum_probs=101.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhH---HHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 005305 99 SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTY---DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH 175 (703)
Q Consensus 99 ~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~---~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y 175 (703)
..-..+.+.|++++|++.|+.+.... +-+.... -.+..++.+.+++++|...++..++.-......-+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 33333788999999999999998864 2222222 345577788999999999999998864221112222222222
Q ss_pred HhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 005305 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255 (703)
Q Consensus 176 ~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 255 (703)
+.. ......|......+..- -......+|+..|+++++. -|++ .-..+|.+...
T Consensus 115 ~~~---~~~~~~~~~~~~~~~~~--------rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~ 168 (243)
T PRK10866 115 TNM---ALDDSALQGFFGVDRSD--------RDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLV 168 (243)
T ss_pred hhh---hcchhhhhhccCCCccc--------cCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHH
Confidence 210 01111122111111000 0001123455555555443 2222 11223333222
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC--C----cccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK--T----TVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 256 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
.+...= ..---.+...|.+.|.+..|..-|+.+.+. + ......++.+|...|..++|......+.
T Consensus 169 ~l~~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 169 FLKDRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 221110 001124566788888888888888777642 2 2345567788888888888877765543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.062 Score=53.12 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC---cchHHHHH
Q 005305 471 HYACMIELLGREGLLDEAFALIRGA-PFKTTK----NMWAALLTACRVNGNLELGKFAAEKLYGMEPEK---LSNYVVLL 542 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 542 (703)
.|...+..+.+.|++++|...|+.. ...|+. ..+--+..++...|+++.|...|++++...|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666553 112221 244445566667777777777777777666654 34455556
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 005305 543 NIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 543 ~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 677777777777777777664
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.15 Score=45.60 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
....++..+...|+++.+...+++++..+|-+-..|..++.+|...|+..+|.++++++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677788899999999999999999999999999999999999999999999998875
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.69 E-value=3 Score=42.82 Aligned_cols=83 Identities=14% Similarity=0.026 Sum_probs=41.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 183 (703)
+.+..++.+|+..+....... +.+..-|..=...+...++++++.--.+.-++.. +.........-..+...++..+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 556667888888888887764 3333334444444455555555544333333221 1111122233344444455555
Q ss_pred HHHHHc
Q 005305 184 ARRLFD 189 (703)
Q Consensus 184 A~~~f~ 189 (703)
|.+.|+
T Consensus 136 A~~~~~ 141 (486)
T KOG0550|consen 136 AEEKLK 141 (486)
T ss_pred HHHHhh
Confidence 555554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.34 E-value=4.2 Score=42.30 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=57.0
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 489 FALIRGAPFKT----TKNMWAALLTA--CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 489 ~~~~~~m~~~p----~~~~~~~ll~a--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
..++++.+..| +...-+.|..| ...+|++.++.....-+.++.| ++.+|..++-.+....+++||.+++..++
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 44455555544 23344555555 3688999999998888999999 59999999999999999999999998765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.32 E-value=5.2 Score=43.22 Aligned_cols=410 Identities=11% Similarity=0.044 Sum_probs=222.1
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSS-TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~L 171 (703)
+...|+++|. --+....+.+...+..+... .|..+ -|.....-=.+.|..+.+.++|+..+. |++.++..|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 5567888888 55555556777777777754 24433 233333344567888888899988876 466777777776
Q ss_pred HHHHH-hCCChHHHHHHHccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHh--
Q 005305 172 LLMHV-RCGMMIDARRLFDEMPE------RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA-- 242 (703)
Q Consensus 172 i~~y~-~~g~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-- 242 (703)
+.... ..|+.+.-+..|+.... ....-|...|.--..++++.....+|++.++-. ...|+....-+.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHH
Confidence 66554 34677777777766543 345568888887777888888888888887631 111222111111
Q ss_pred -c------CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC-CHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcH
Q 005305 243 -G------LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG-SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314 (703)
Q Consensus 243 -~------~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 314 (703)
+ ....++..++-...... ..-...+ ..+.-....+....+ .+..+
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~--------------s~~l~ 248 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDP--------------SKSLT 248 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCc--------------cchhh
Confidence 0 01111111111111000 0000000 001111111111111 01111
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHc-------CCCCchHHHHHHHhhHHhcCCHHHHH
Q 005305 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH-------GFGLDIVANSALVDFYSKWGRIEDAR 387 (703)
Q Consensus 315 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~Li~~y~k~g~~~~A~ 387 (703)
++.....+... .--..+-........+..++.-++. -..++..+|+..++.-.+.|+.+...
T Consensus 249 ~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~ 317 (577)
T KOG1258|consen 249 EEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVF 317 (577)
T ss_pred HHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHH
Confidence 11111111000 0000111111122222223333321 11234567888888888889999998
Q ss_pred HHhhhcCcC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcC
Q 005305 388 HVFDKMLCK---NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464 (703)
Q Consensus 388 ~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 464 (703)
-+|++..-| =...|--.+.-.-..|+.+-|-.++....+--++-...+-..-..-+-..|+.+.|..+++.+..++
T Consensus 318 ~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~- 396 (577)
T KOG1258|consen 318 ILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY- 396 (577)
T ss_pred HHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-
Confidence 888887543 2234544444444448877777777665553222222222222223556789999999999998743
Q ss_pred CCCch-HHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 465 IKPRA-MHYACMIELLGREGLLDEAF---ALIRGA-PFKTTKNMWAALLT-----ACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 465 ~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~-----a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
|+. ..-.--+.+.-|.|..+.+. +++... +.+-+......+.. -+...++.+.|..++.++.+..|++
T Consensus 397 --pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 397 --PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred --CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 543 33334456677889998888 555443 22223333332222 2345688999999999999999999
Q ss_pred cchHHHHHHHHHhCCChH
Q 005305 535 LSNYVVLLNIYNSSGKLK 552 (703)
Q Consensus 535 ~~~~~~l~~~y~~~g~~~ 552 (703)
...|..+++.....+...
T Consensus 475 k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 475 KVLYLELIRFELIQPSGR 492 (577)
T ss_pred HHHHHHHHHHHHhCCcch
Confidence 999999999987776433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.7 Score=37.10 Aligned_cols=140 Identities=18% Similarity=0.156 Sum_probs=82.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3456777777777777653 23344454544333334444445555555432222 235555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 005305 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567 (703)
Q Consensus 489 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 567 (703)
..-+-.+. .+..-....+++....|.-++-..+...+.+-+..+|....-++++|.+.|...++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55554443 234445667788889999999999999988655455889999999999999999999999999999974
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.15 Score=51.57 Aligned_cols=256 Identities=14% Similarity=0.059 Sum_probs=136.8
Q ss_pred HHHhCCChhHHHHHHHHhHHcCCC---CChhhHHHHHHHHhcCCChHHHHHHHHHHHH--h--CC-CCcHHHHHHHHHHH
Q 005305 205 GMIDSGDYLEAFLLFLDLWEEFSD---CGSRTFATMIRASAGLELISVGKQLHSCALK--M--GF-GDNVFVSCALIDMY 276 (703)
Q Consensus 205 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~Li~~y 276 (703)
-+++.|+....+.+|+...+-|.. .-+..|..+.+++.-.+++++|.++|..=+. . |- .........|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 356777777777777777776643 1123455666677777788888877653221 1 10 00111222333444
Q ss_pred HhCCCHHHHHHHHhhcC-------CC--CcccHHHHHHHHHHcCC--------------------cHHHHHHHHHH----
Q 005305 277 SKCGSIEDAQGVFDEMS-------EK--TTVGWNTIIAGYALHGY--------------------SEEALDLYYEM---- 323 (703)
Q Consensus 277 ~~~g~~~~A~~~f~~m~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m---- 323 (703)
--.|.+++|.-...+-. .+ ....+-.+...|...|+ ++.|.+.|.+=
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44556665544322111 11 11233344555554442 12233333321
Q ss_pred HHCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHH----cCCC-CchHHHHHHHhhHHhcCCHHHHHHHhhhc----
Q 005305 324 RDSGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVR----HGFG-LDIVANSALVDFYSKWGRIEDARHVFDKM---- 393 (703)
Q Consensus 324 ~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m---- 393 (703)
...|-.. --..|..+-+.|--+|+++.+...|+.-+. .|-. .....+..|.++|.-.|+++.|.+.|...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1111100 112344444445556788888887776443 2211 12345667778888888888888877654
Q ss_pred ---CcCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 394 ---LCKN--VISWNALIAGYGNHGRGEEAVELFEQMLL----NG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 394 ---~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
..+. ..+.-+|...|.-..++++|+..+.+-+. .+ ..-....+-+|..++...|..++|..+.+.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2233 23556677777777778888877765332 11 11123566677788888888888777665443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.058 Score=41.47 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=46.8
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchH
Q 005305 477 ELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
..|.+.+++++|.+.++++ ...| +...|......+...|+++.|...+++.++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4677888888888888774 3344 455677777788888888888888888888888865543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.27 Score=42.37 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=30.0
Q ss_pred CCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 429 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
..|+..++.+++.+++..|++..|.++.+...+.++++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666666666666666666666666666665555555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=3.1 Score=43.74 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=35.4
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcC--cCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKML--CKNV----ISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
+...++.+..+|.+.|++++|...|++.. .|+. .+|..+..+|...|+.++|++.+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666666666666666666542 2332 2356666666666666666666666655
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.45 Score=46.77 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=47.2
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHH---hcCCChHHHHHHHHHHHHhCCCCcHHHHHH
Q 005305 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS---AGLELISVGKQLHSCALKMGFGDNVFVSCA 271 (703)
Q Consensus 195 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 271 (703)
|...|-.|...|.+.|+...|+.-|....+.- .+|...+..+..++ +......++..+++++++.. +.|+....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 55666666666666666666666666654421 11222222222222 22223444555555555543 334444444
Q ss_pred HHHHHHhCCCHHHHHHHHhhcC
Q 005305 272 LIDMYSKCGSIEDAQGVFDEMS 293 (703)
Q Consensus 272 Li~~y~~~g~~~~A~~~f~~m~ 293 (703)
|...+...|++.+|...|+.|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 4444555555555555555444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.4 Score=47.44 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=24.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNH----VTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
.+.|++++|+..|+.+++. .|+. ..+..+..++...|++++|...|+.+.+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555553 2322 2333444445555555555555555544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.33 Score=41.87 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHh--------------HhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC----
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSM--------------SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA---- 495 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m--------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 495 (703)
.++..++.++++.|+++....+.+.. .......|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 44444555555555555444444332 122345677888888888888888888888877643
Q ss_pred CCCCCHHHHHHHHHHHHHcC
Q 005305 496 PFKTTKNMWAALLTACRVNG 515 (703)
Q Consensus 496 ~~~p~~~~~~~ll~a~~~~g 515 (703)
+++-+...|..|+.=+...-
T Consensus 83 ~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 34445677887777554443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.3 Score=42.19 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=27.9
Q ss_pred HHHhCCCHHHHHHHHhhcCCC--C----cccHHHHHHHHHHcCCcHHHHHHHHHHHHC
Q 005305 275 MYSKCGSIEDAQGVFDEMSEK--T----TVGWNTIIAGYALHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 275 ~y~~~g~~~~A~~~f~~m~~~--~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 326 (703)
.+...|++++|.+.|+.+... + ..+.-.++.++.+.|++++|...|++..+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556666666666665431 1 113344555666666677776666666554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.29 Score=49.95 Aligned_cols=63 Identities=8% Similarity=0.013 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 502 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
.++..|...+.+.+.+..|.+...+.++++|+|+-+..--+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 456677778889999999999999999999999999999999999999999999999999853
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.28 Score=47.30 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=80.9
Q ss_pred HHHHHhhhcC--cCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccC----------
Q 005305 385 DARHVFDKML--CKNVISWNALIAGYGNH-----GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG---------- 447 (703)
Q Consensus 385 ~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 447 (703)
.-+..|.... ++|-.+|-+++..|..+ +..+=....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455676665 68888999999888754 456666777889999999999999999998775543
Q ss_pred ------CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChH
Q 005305 448 ------LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486 (703)
Q Consensus 448 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 486 (703)
.-+=+..+++.|.. +|+.||.++-..|+++++|.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 22347889999987 899999999999999999988654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=4.5 Score=38.22 Aligned_cols=196 Identities=21% Similarity=0.145 Sum_probs=123.0
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcC-----cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKML-----CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 441 (703)
..........+...+.+..+...+.... ......+..+...+...+.+.++...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455556666666677776666666543 22334455555566666667777777777766433321 11222222
Q ss_pred -HHHccCCHHHHHHHHHHhHhhcCC--CCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcC
Q 005305 442 -ACSRSGLSERGWEIFQSMSRDHKI--KPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTT--KNMWAALLTACRVNG 515 (703)
Q Consensus 442 -a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~a~~~~g 515 (703)
++...|+++.+...+..... ..- ......+......+...++.++|...+.+. ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56777788888887777743 111 122333444444466677888888777763 22333 556777777788888
Q ss_pred ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+.+.+...+.......|.....+..+...+...|.++++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888875556667777777777788888887776643
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.055 Score=42.26 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhCC----C---CCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 504 WAALLTACRVNGNLELGKFAAEKLYGM----E---PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~~~~----~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
++.+...+...|++++|+..+++++++ . |.-..++..++.+|...|++++|.+.+++..
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444445555444444444321 1 1124568889999999999999999888764
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.25 E-value=2.9 Score=41.15 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=83.9
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCChh
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA---LLTACRVNGNLE 518 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~a~~~~g~~~ 518 (703)
.....|+..++...|+..... .+-+...--.|+..|...|+.++|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345677888888888877662 223345556778888889999999999988876443333333 223333333333
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 519 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
+... ++.-+..+|+|...-..|+..|...|+.++|.+.+=.+.+++.
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3322 3344567899999999999999999999999998887776543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.43 Score=48.46 Aligned_cols=252 Identities=12% Similarity=0.014 Sum_probs=125.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHH--h--CCC-CCcchHHHHHHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGS----STYDALISACIGLRSIREVKRVFSYMLS--T--GFE-PDLYMRNRVLLM 174 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~l~~~~~~--~--g~~-~~~~~~~~Li~~ 174 (703)
+++.|+.+..+.+|+...+-| ..|. .+|..|-.+|.-.+++++|.+.|..=+. . |-. ........|-+.
T Consensus 27 Lck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 899999999999999999987 3343 4566677778888899999988764321 1 100 011111222233
Q ss_pred HHhCCChHHHHHHHcc-C------CCC--CcccHHHHHHHHHhCCC--------------------hhHHHHHHHHhHH-
Q 005305 175 HVRCGMMIDARRLFDE-M------PER--NLVSCNMIIAGMIDSGD--------------------YLEAFLLFLDLWE- 224 (703)
Q Consensus 175 y~~~g~~~~A~~~f~~-m------~~~--d~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 224 (703)
+--.|.+++|...-.. + -.+ ....+-.+...|...|+ ++.|.++|.+-++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3334566665432211 1 000 11122234444543332 2233444433211
Q ss_pred ---cCCC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHH----hCC-CCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC--
Q 005305 225 ---EFSD-CGSRTFATMIRASAGLELISVGKQLHSCALK----MGF-GDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-- 293 (703)
Q Consensus 225 ---~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-- 293 (703)
.|-. .-...|..+.+.+--.|+++.+...|..-+. .|- ......+..|.+.+.-.|+++.|.+.|....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 0112344445555556777877777664332 221 1123455666777777777777777665421
Q ss_pred -----CCC--cccHHHHHHHHHHcCCcHHHHHHHHHHHH----CC-CCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 005305 294 -----EKT--TVGWNTIIAGYALHGYSEEALDLYYEMRD----SG-VKMDHFTFSMIIRICTRLASLEHAKQAHAG 357 (703)
Q Consensus 294 -----~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 357 (703)
++. ..+.-+|...|.-..++++|+.++.+-.. .+ ..-....+-++-.++...|.-++|..+...
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 222 22344455555555556666655544221 00 111223444455555555555555444333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.87 E-value=2.2 Score=37.67 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=21.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh
Q 005305 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379 (703)
Q Consensus 337 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 379 (703)
.++..+...+.......+++.+++.+. .+....|.++.+|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 444445444555555555555555442 344455555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.84 E-value=6.1 Score=37.47 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=34.0
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005305 303 IIAGYALHGYSEEALDLYYEMRDSGVK--MDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361 (703)
Q Consensus 303 li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 361 (703)
....+.+.|++++|.+.|+++...-.. --....-.+..++-+.++++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344566778888888888888764211 11123334555666667777777777666664
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.14 Score=39.87 Aligned_cols=61 Identities=28% Similarity=0.351 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CcC-HHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLN----GM-RPN-HVTFLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
+++.+...|...|++++|+..|++..+. |- .|+ ..++..+...+...|++++|.++++...
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555444421 11 122 2455555566666666666666665544
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.75 E-value=9.1 Score=44.78 Aligned_cols=51 Identities=10% Similarity=-0.072 Sum_probs=23.4
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCChhHHHHHHHHH
Q 005305 477 ELLGREGLLDEAFALIRGAPFKTTKNMW--AALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
.+|-.+|+|.+|+.+-.++....|...- ..|.+-+...++.-+|-.+..+.
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 3444555555555555554433333221 34444555555544444444433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.7 Score=39.21 Aligned_cols=89 Identities=19% Similarity=0.170 Sum_probs=70.4
Q ss_pred HHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC----cchHHHHHHHHHhCCCh
Q 005305 478 LLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK----LSNYVVLLNIYNSSGKL 551 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~ 551 (703)
+++..|+++.|++.|.+. .. +.....|+.-..+++-.|+.++|..-+.+++++..+. ...|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 467788899998888763 22 2356788888899999999999999999888766432 23578888899999999
Q ss_pred HHHHHHHHHHHhCCC
Q 005305 552 KEAAEVIRTLRRKGL 566 (703)
Q Consensus 552 ~~A~~~~~~m~~~~~ 566 (703)
+.|..-|...-+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999988877764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.30 E-value=2.4 Score=45.36 Aligned_cols=158 Identities=10% Similarity=0.031 Sum_probs=102.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 183 (703)
..-+++++++.+..+.-.-.+.++ ..-.+.++..+-+.|..+.|.++-.. + ..-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHH
Confidence 567888998877765221111022 44578888888889988888876543 2 234577789999999
Q ss_pred HHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 005305 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263 (703)
Q Consensus 184 A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 263 (703)
|.++-++.. +...|..|.+...++|+++-|.+.|.+... |..++-.+...|+.+.-.++.......| .
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~ 404 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D 404 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C
Confidence 999998776 666999999999999999999999987642 5566666777788877777777776665 1
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 005305 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEM 292 (703)
Q Consensus 264 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 292 (703)
+|.-..++.-.|++++..+++.+.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 233333444456666666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.26 E-value=17 Score=40.71 Aligned_cols=75 Identities=8% Similarity=-0.019 Sum_probs=43.4
Q ss_pred chHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc
Q 005305 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243 (703)
Q Consensus 166 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 243 (703)
.++...|+.+.-.|++++|-...-.|...+..-|.--+.-+...++......+ +.......+...|-.+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 45666777777777777777777777766777777666666666654433222 2111122334445555555544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.92 Score=40.42 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhH----hhcCCCCchHH
Q 005305 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMS----RDHKIKPRAMH 471 (703)
Q Consensus 402 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 471 (703)
..++..+...|++++|+.+.+.+... .| |...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33444555556666666666665553 23 34555556666666666666665555442 23466665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.15 E-value=15 Score=39.91 Aligned_cols=159 Identities=13% Similarity=0.075 Sum_probs=96.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHcC-CCCCh-----hhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCcHHHH
Q 005305 200 NMIIAGMIDSGDYLEAFLLFLDLWEEF-SDCGS-----RTFATMIRASAG----LELISVGKQLHSCALKMGFGDNVFVS 269 (703)
Q Consensus 200 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 269 (703)
..++....-.|+-+.+++++.+-.+.+ +.-.- -+|..++..+.. ..+.+.+.+++..+.+.= |......
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lfl 270 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALFL 270 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 334555556677777777777654422 22111 123333333332 456778888888887752 3333333
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCC-------CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 005305 270 CALIDMYSKCGSIEDAQGVFDEMSEK-------TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342 (703)
Q Consensus 270 ~~Li~~y~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 342 (703)
---...+...|++++|.+.|++.... ....+--+.-.+.-..++++|.+.|..+.+.. .....+|.-+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 34456677789999999999875431 11223334445677889999999999998763 44555666666555
Q ss_pred -hccCCH-------HHHHHHHHHHHH
Q 005305 343 -TRLASL-------EHAKQAHAGLVR 360 (703)
Q Consensus 343 -~~~~~~-------~~a~~~~~~~~~ 360 (703)
...++. ++|..++..+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 345555 677777776644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=6.3 Score=41.61 Aligned_cols=157 Identities=13% Similarity=0.165 Sum_probs=86.3
Q ss_pred hhH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-cCCCcCHH-HHHHHHHHHHc---------cCCHHHHHHHHHHhH
Q 005305 399 ISW--NALIAGYGNH-----GRGEEAVELFEQMLL-NGMRPNHV-TFLAVLSACSR---------SGLSERGWEIFQSMS 460 (703)
Q Consensus 399 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 460 (703)
..| ..++.|.... ...+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554441 134678888888872 23566653 33332222111 123445555555555
Q ss_pred hhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch-
Q 005305 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN- 537 (703)
Q Consensus 461 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~- 537 (703)
+ --+-|+.....+..+++-.|+++.|...|++. ...||. .+|......+...|+.++|.+..++.++++|....+
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 12234555555556666667777777777764 335553 355555556667777777777777777777764332
Q ss_pred -HHHHHHHHHhCCChHHHHHHH
Q 005305 538 -YVVLLNIYNSSGKLKEAAEVI 558 (703)
Q Consensus 538 -~~~l~~~y~~~g~~~~A~~~~ 558 (703)
.-..+++|+.. .+++|.+++
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHH
Confidence 22334445443 355566555
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.86 E-value=4.5 Score=37.85 Aligned_cols=160 Identities=18% Similarity=0.119 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
..||-+.--+...|+++.|.+.|+...+. .|.. .++..-.-++.-.|+++-|.+=|...-+.-.-.|=...|-.++
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 45666666666777777777777776663 3322 2222222233445666666554444322111122222222222
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC-------cchHHHHHHHHHhCCC
Q 005305 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-------LSNYVVLLNIYNSSGK 550 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g~ 550 (703)
.+.-++.+|..-+.+--.+-|..-|+..+-.+.-..-.++ .+++++..-..++ .++|.-|+.-|...|.
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2333555554433221112344555554444432221111 1222222211121 4689999999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 005305 551 LKEAAEVIRTLRRKG 565 (703)
Q Consensus 551 ~~~A~~~~~~m~~~~ 565 (703)
.++|..+|+-....+
T Consensus 253 ~~~A~~LfKLaiann 267 (297)
T COG4785 253 LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999876443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.82 E-value=3.1 Score=41.46 Aligned_cols=148 Identities=15% Similarity=0.055 Sum_probs=69.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHH----HhcCChH
Q 005305 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL----GREGLLD 486 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~----~~~g~~~ 486 (703)
+|...+|-..++++.+. .+.|...+.-.=.+|...|+.+.-+..++++.. ...|+...|..+=.+| ..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 44555555555555543 223444455455556666665555555555543 2344444444333333 2556666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC----CcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 487 EAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE----KLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 487 ~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
+|++.-++. .+.| |.-.-.++.......|+.++|.+.+.+--..-.. -...|-..+-.|...+.++.|.++++.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666665542 3322 2222233333444555555555554433211111 012233444445555666666666654
Q ss_pred H
Q 005305 561 L 561 (703)
Q Consensus 561 m 561 (703)
=
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.48 E-value=22 Score=40.25 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=39.0
Q ss_pred HHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCchHHHHHHHhhHHh---cC
Q 005305 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG-FGLDIVANSALVDFYSK---WG 381 (703)
Q Consensus 306 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~k---~g 381 (703)
.+.-.|+++.|++.+.+ ..+...|.+.+...+.-+.-..-.+... ..+.... -.+...-+..||..|.+ ..
T Consensus 267 ~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 44558999999988876 3344667777777766554333222211 2222211 01111445667777775 45
Q ss_pred CHHHHHHHhhhcC
Q 005305 382 RIEDARHVFDKML 394 (703)
Q Consensus 382 ~~~~A~~~f~~m~ 394 (703)
+..+|.+.|--+.
T Consensus 342 d~~~Al~Y~~li~ 354 (613)
T PF04097_consen 342 DPREALQYLYLIC 354 (613)
T ss_dssp -HHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHH
Confidence 6777777766553
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.45 E-value=23 Score=40.11 Aligned_cols=174 Identities=11% Similarity=0.091 Sum_probs=100.2
Q ss_pred HHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHH----hccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 005305 99 SQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC----IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173 (703)
Q Consensus 99 ~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~----~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 173 (703)
..-+. +.+...+.-|+.+-+. .+ .|..+...+...| .+.|++++|..-+-+.+.. ++| ..+|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 44566 7788888888877543 32 3444444555444 3678888887665554421 122 22344
Q ss_pred HHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHH
Q 005305 174 MHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250 (703)
Q Consensus 174 ~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 250 (703)
-|....++.+-...++.+.+ .+...-+.|+.+|.+.++.++-.++.+.-. .|.. .+-+-..+..|.+.+-+++|
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 45444455555555555543 234445668888888888877666654432 2221 12244566666666767766
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 005305 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295 (703)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~ 295 (703)
..+-.. .+ ....+...++ -..+++++|.+.+..++-+
T Consensus 483 ~~LA~k---~~--~he~vl~ill---e~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 483 ELLATK---FK--KHEWVLDILL---EDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHH---hc--cCHHHHHHHH---HHhcCHHHHHHHHhcCCHH
Confidence 654332 22 2334444443 3468899999999998754
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.11 E-value=7.8 Score=34.05 Aligned_cols=43 Identities=5% Similarity=0.097 Sum_probs=21.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhC
Q 005305 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC 178 (703)
Q Consensus 135 ~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~ 178 (703)
.++..+...+........++.+++.+ ..+....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444445555555555555444 23444555555555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.05 E-value=2.6 Score=45.17 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=79.4
Q ss_pred HHHhcCCHHHHHHHHHH-HHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCCh
Q 005305 407 GYGNHGRGEEAVELFEQ-MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485 (703)
Q Consensus 407 ~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 485 (703)
....+|++++++++.+. -.-..++ ..-...++.-+.+.|..+.|+++-..- + .-.++..++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~-----~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP--------D-----HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H--------H-----HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh--------H-----HHhHHHHhcCCH
Confidence 34456777776666541 1111111 233556666667777777777663222 1 123556678888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 486 ~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+.|.++.++.. +...|..|.......|+++.|+.++++. .-+..|+-+|...|+.+.-.++.+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888776654 6778888888888888888888888764 346777788888888777777766666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.94 E-value=13 Score=38.49 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCC---Cccc----HHHHHHHHHH---cCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 005305 271 ALIDMYSKCGSIEDAQGVFDEMSEK---TTVG----WNTIIAGYAL---HGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340 (703)
Q Consensus 271 ~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~----~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 340 (703)
.|+-.|-...+++...++.+.+... +... --...-++-+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444588888888888888888753 2111 1122234445 7888999999988666666778888776665
Q ss_pred HH
Q 005305 341 IC 342 (703)
Q Consensus 341 a~ 342 (703)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.92 E-value=5.6 Score=42.13 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=89.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 005305 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 490 (703)
..+...-+++-++..+ +.||-.+-..+| +--.+..+.++.++|++..+. + ...+..- ......|. ..+
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc---hhh
Confidence 3445555555556555 466664443333 333455678888888877651 1 1111000 00001111 111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC--CcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 005305 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE--KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568 (703)
Q Consensus 491 ~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 568 (703)
.+.+-...|-..+-..|...+++.|+.++|.+.++++++..|. +......|++.|...+++.++..++.+-.+....+
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 1211111222334456777788999999999999999987765 45577899999999999999999998876544444
Q ss_pred CCceeE
Q 005305 569 LPACSW 574 (703)
Q Consensus 569 ~~~~s~ 574 (703)
....+|
T Consensus 329 SAti~Y 334 (539)
T PF04184_consen 329 SATICY 334 (539)
T ss_pred hHHHHH
Confidence 433333
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.77 E-value=13 Score=35.70 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-------CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhC----CCCCCcchH
Q 005305 471 HYACMIELLGREGLLDEAFALIRGAPF-------KTTK-NMWAALLTACRVNGNLELGKFAAEKLYG----MEPEKLSNY 538 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m~~-------~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~p~~~~~~ 538 (703)
.|..+...|.|..+++||-..|.+-.. -|+. ..+.+.+-.+....++..|+..++.-.+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 344445556666666666555544221 1222 1234444455555677777777776543 235566667
Q ss_pred HHHHHHHHhCCChHHHHHHH
Q 005305 539 VVLLNIYNSSGKLKEAAEVI 558 (703)
Q Consensus 539 ~~l~~~y~~~g~~~~A~~~~ 558 (703)
..|+..| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 7777776 567777777665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=1.7 Score=45.72 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHhHhhcCCCCch-HHHHHHHHHHH---------hcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC
Q 005305 448 LSERGWEIFQSMSRDHKIKPRA-MHYACMIELLG---------REGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNG 515 (703)
Q Consensus 448 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~---------~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g 515 (703)
..+.|..+|.+......+.|+- ..|..+...+. ......+|.++.++. .. .-|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4577888898887444566663 33333332221 122344566666553 33 346777777777778888
Q ss_pred ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+.+.|...++++..++|+.+.+|...+....-+|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999885543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.54 E-value=2.3 Score=43.60 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGA-PFK-TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 547 (703)
..+..+.-.|.+.+.+.+|++..+.. ... +|+-..--=..||...|+++.|+..++++++++|+|-.+-.-|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35566777788999999999888763 333 4555555567788999999999999999999999998888888888777
Q ss_pred CCChHHH-HHHHHHHHhC
Q 005305 548 SGKLKEA-AEVIRTLRRK 564 (703)
Q Consensus 548 ~g~~~~A-~~~~~~m~~~ 564 (703)
..+..+. .+++..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7766655 7788888643
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.45 E-value=7.6 Score=39.24 Aligned_cols=45 Identities=7% Similarity=0.135 Sum_probs=21.7
Q ss_pred HHcCCcHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHhccCCHHHHH
Q 005305 308 ALHGYSEEALDLYYEMRDS--GVKMDHFTFSMIIRICTRLASLEHAK 352 (703)
Q Consensus 308 ~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~~~~~~a~ 352 (703)
.+..+.++|+..+.+-... +..---.+|..+..+.+..|.++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 3456666777666655432 01111234445555555555554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.43 E-value=13 Score=35.03 Aligned_cols=195 Identities=20% Similarity=0.151 Sum_probs=114.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CCh-hhHHHHHH-HHH
Q 005305 335 FSMIIRICTRLASLEHAKQAHAGLVRH-GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNV-ISWNALIA-GYG 409 (703)
Q Consensus 335 ~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~~-~~~~~li~-~~~ 409 (703)
+......+...+.+..+...+...... ........+..+...+...+....+...+..... ++. ..+..... .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333333444444444444444443331 1222334444455555555556666666665533 111 22222233 677
Q ss_pred hcCCHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCC
Q 005305 410 NHGRGEEAVELFEQMLLNGMRP----NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGL 484 (703)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 484 (703)
..|++++|...|.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...|.
T Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 142 ELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHccc
Confidence 78888888888888754 333 223344444446677788888888888766 2233 35667777788888888
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 485 LDEAFALIRGA-PFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 485 ~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
+++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888764 33444 345555555555667788888888888888876
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.27 E-value=2.2 Score=42.42 Aligned_cols=115 Identities=9% Similarity=-0.009 Sum_probs=92.1
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHH----HHHHHHHHHcCChh
Q 005305 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMW----AALLTACRVNGNLE 518 (703)
Q Consensus 445 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~----~~ll~a~~~~g~~~ 518 (703)
..|...+|...++.+.+ ..+.|...+.--=+++...|+.+.-...|+++ |. .||...| ..+.-+....|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45778888888898887 45677777777778899999999988888885 44 5665433 23333446789999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 519 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
+|+..+++.++++|.|.-+...+..++--.|+..|+.++..+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999888889999999999999999987654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.25 E-value=4.3 Score=35.55 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=39.7
Q ss_pred HHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 479 LGREGLLDEAFALIRGA----PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 479 ~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
..+.|++++|.+.|+.+ |..| ....-..|+.++...+++++|...+++.+++.|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34567777777777664 2222 2234456777888888888888888888888887653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.23 E-value=2.3 Score=41.40 Aligned_cols=95 Identities=22% Similarity=0.174 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCch-HHHHHHH
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRP--NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA-MHYACMI 476 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li 476 (703)
.|+.-+.. .+.|++.+|...|...++....- ....+-.|..++...|++++|..+|..+.++++-.|.. +.+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35555443 34566888888888877642110 11234456777777888888888887777766555543 5666666
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 005305 477 ELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m 495 (703)
....+.|+.++|...+++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 6677777777777766654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.08 E-value=13 Score=40.48 Aligned_cols=161 Identities=17% Similarity=0.100 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcCH-----HHHHHHHHHHHc----cCCHHHHHHHHHHhHhhcCCCCchH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLN-GMRPNH-----VTFLAVLSACSR----SGLSERGWEIFQSMSRDHKIKPRAM 470 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~ 470 (703)
...+++...-.|+-+.+++++.+-.+. ++.-.. .+|..++..+.. ....+.+.++++.+.+.+ |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 334555566667777777777665542 122111 123333333332 456788999999887733 5554
Q ss_pred HHHHH-HHHHHhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHH-HHH
Q 005305 471 HYACM-IELLGREGLLDEAFALIRGAPF------KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV-VLL 542 (703)
Q Consensus 471 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~ 542 (703)
.|... ...+...|++++|.+.|++.-. +-....+--+...+....++++|...+.++.+...-+...|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 44333 3556678999999999986421 112233344556677889999999999999986655444444 455
Q ss_pred HHHHhCCCh-------HHHHHHHHHHHhC
Q 005305 543 NIYNSSGKL-------KEAAEVIRTLRRK 564 (703)
Q Consensus 543 ~~y~~~g~~-------~~A~~~~~~m~~~ 564 (703)
-+|...|+. ++|.+++++.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 567778888 8888888887643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.88 E-value=23 Score=37.07 Aligned_cols=129 Identities=13% Similarity=0.102 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHH-HHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTKNMW-AALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~-~~ll~a~ 511 (703)
..|...+++-.+..-++.|+.+|-...+..-+.+++..+++++.-++ .|+..-|.++|+- |..-||...| .-.+.-.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34555666666777788888999888773226778888888887664 5777888888874 5444565544 4555566
Q ss_pred HHcCChhHHHHHHHHHhCCCCC--CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 512 RVNGNLELGKFAAEKLYGMEPE--KLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
..-++-+.|+.+|+...+.-.+ -...|..+++--..-|+...|..+=+.|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6778888888888855422111 135788888888888888877777766654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.80 E-value=1.3 Score=42.93 Aligned_cols=103 Identities=11% Similarity=0.080 Sum_probs=69.7
Q ss_pred CcccchhhcccccCccCCCCCcccHHHHHH-HHhc-----CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC---
Q 005305 74 KIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLN-----KRYREALELFEILEFEGGFDVGSSTYDALISACIGLR--- 144 (703)
Q Consensus 74 ~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~-----g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~--- 144 (703)
++... ++.|...+..+.|-.+|-+++. +... +..+---..++.|.+-| +.-|..+|+.||..+-+..
T Consensus 49 ~Lv~~---e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG-VerDl~vYk~LlnvfPKgkfiP 124 (406)
T KOG3941|consen 49 SLVHV---EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG-VERDLDVYKGLLNVFPKGKFIP 124 (406)
T ss_pred cccch---hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc-chhhHHHHHHHHHhCccccccc
Confidence 44445 7777777733338888888888 6543 44555556678888888 8899999999988764422
Q ss_pred -------------ChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCC
Q 005305 145 -------------SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM 180 (703)
Q Consensus 145 -------------~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 180 (703)
+-.-+..++++|...|+.||-.+-..|++.+.+.+-
T Consensus 125 ~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 125 QNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223456677777777777777777777777666553
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.55 E-value=10 Score=36.74 Aligned_cols=76 Identities=11% Similarity=0.061 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcc------cHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 005305 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV------GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340 (703)
Q Consensus 267 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 340 (703)
..|+.-+.- .+.|++++|.+.|+.+..+.+. +--.++.++-+.+++++|+..+++....-..-...-|..-|.
T Consensus 36 ~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 344433333 4678899999999888754222 334456677788999999998888776533222334444444
Q ss_pred HHh
Q 005305 341 ICT 343 (703)
Q Consensus 341 a~~ 343 (703)
+.+
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.46 Score=29.79 Aligned_cols=30 Identities=30% Similarity=0.279 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 504 WAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
|..+...+...|++++|+..++++++++|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 444555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.34 Score=30.53 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
+|..+..++...|++++|...++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.61 Score=29.96 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 537 NYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 537 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999998844
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.83 E-value=14 Score=39.16 Aligned_cols=197 Identities=10% Similarity=-0.005 Sum_probs=138.9
Q ss_pred hhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHH
Q 005305 59 CCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALI 137 (703)
Q Consensus 59 ~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll 137 (703)
..+-|+++..|.. |-+... +++++.|- .-+++. +.++-...-...+-.+|..-| .+...|..++
T Consensus 42 ~~~k~si~~lyis-g~~~~s---~~~l~d~~--------l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~ 106 (711)
T COG1747 42 AHSKNSIIALYIS-GIISLS---KQLLDDSC--------LVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELL 106 (711)
T ss_pred HHhhhhhHHHHHH-HHHHhh---hccccchH--------HHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHH
Confidence 3566788888887 777777 66666553 456778 888888888888888898866 5788899999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCc---------ccHHHHHHHHHh
Q 005305 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL---------VSCNMIIAGMID 208 (703)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~---------~~~~~li~~~~~ 208 (703)
+.|... ..+.-..+++++++..+ .|++...-|.+.|-+ ++.+.+...|.....+=+ ..|.-++..-
T Consensus 107 q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i-- 181 (711)
T COG1747 107 QCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI-- 181 (711)
T ss_pred HHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--
Confidence 999888 56777889999988763 455566677777776 888888888876543211 2566665421
Q ss_pred CCChhHHHHHHHHhHH-cCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 005305 209 SGDYLEAFLLFLDLWE-EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 276 (703)
..+.+..+.+...... .|..--.+.+--+-.-|....++.++.+++..+++.. ..|+.....++..+
T Consensus 182 ~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 182 GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 2445555666555543 3444445566667778888999999999999888876 56666666666544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.76 E-value=2.2 Score=41.48 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=32.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPE---KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
|..++...|+++.|...|....+-.|+ -+..+.-|+.+..+.|+.++|...+++..++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344445555555555555554443333 3455666666666777777777766666543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=89.74 E-value=7.2 Score=35.10 Aligned_cols=84 Identities=12% Similarity=0.016 Sum_probs=37.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
-+.|++++|..+|+-+...+.. |..-+..|..+|-..+.+++|...|..... .. .-|+..+-.+...|...|+.++|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHHH
Confidence 3455555666555555442211 222233333444445555556555554433 11 11222222334455555666666
Q ss_pred HHHHHhC
Q 005305 489 FALIRGA 495 (703)
Q Consensus 489 ~~~~~~m 495 (703)
.+-|...
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5555543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.71 E-value=24 Score=35.40 Aligned_cols=235 Identities=9% Similarity=-0.010 Sum_probs=99.9
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCc----HHHHHHHHHHHHCCCCCCHhhHHHH
Q 005305 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS----EEALDLYYEMRDSGVKMDHFTFSMI 338 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~pd~~t~~~l 338 (703)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+... .||...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 345555555555555555433333333323334444444445555555543 3566666655332 3454444455
Q ss_pred HHHHhccCCHH--HHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcC-CHH
Q 005305 339 IRICTRLASLE--HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG-RGE 415 (703)
Q Consensus 339 l~a~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~ 415 (703)
+.++...+... ............-..++..+-...+.++++.|+.+....+..-+.++|...-...+.++.+.+ ...
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 55544433211 001111112111122344555555555555555332222233333344433333344444432 133
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 416 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
++...+..+.. .+|...-...+.+..+.|+. .+...+-...+. ++ .....+.+++..|.. +|...+.++
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 44444444443 34555555555555555552 333333333321 11 122445555555553 344444443
Q ss_pred C-CCCCHHHHHHHHHH
Q 005305 496 P-FKTTKNMWAALLTA 510 (703)
Q Consensus 496 ~-~~p~~~~~~~ll~a 510 (703)
- ..||..+-...+.+
T Consensus 261 ~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 261 LYKFDDNEIITKAIDK 276 (280)
T ss_pred HhhCCChhHHHHHHHH
Confidence 2 23444443333333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.52 E-value=13 Score=32.02 Aligned_cols=63 Identities=8% Similarity=0.168 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCC
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 465 (703)
.+..+..+..+|.-++-.+++.++.. .-+|++..+..+.+||.+.|+..++.+++..+-+ .|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 34445666677777777777776654 2356666677777777777777777777777665 344
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.99 E-value=27 Score=35.03 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=26.7
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCcC---ChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCcCH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLCK---NVISWNALIAGY---GNHGRGEEAVELFEQMLLNGMRPNH 433 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~~---~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 433 (703)
-+....+.++.+.+.+++.+|... ....+...+..+ ... ....|...+..+....+.|..
T Consensus 127 ~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 127 KLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 344444455566666666655321 123344433333 222 233455555555544444433
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.87 E-value=24 Score=37.66 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=66.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCH--HHHHHHHHHHH
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF--KTTK--NMWAALLTACR 512 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~--~~~~~ll~a~~ 512 (703)
..+..++.+.|..++|.+.|.+|.++............|+..|...+.+.++..++.+-.. -|.. ..|++.+--.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3455666788999999999999987554333455667889999999999999999877531 2333 35666555555
Q ss_pred HcCCh---------------hHHHHHHHHHhCCCCC
Q 005305 513 VNGNL---------------ELGKFAAEKLYGMEPE 533 (703)
Q Consensus 513 ~~g~~---------------~~a~~~~~~~~~~~p~ 533 (703)
..++. ..|.++..++.+.+|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 44442 2345677777777776
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.83 E-value=26 Score=34.71 Aligned_cols=154 Identities=19% Similarity=0.090 Sum_probs=87.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCCh
Q 005305 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485 (703)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 485 (703)
......|++.+|..+|+.......+ +...-..+..++...|+.+.|..++..+-.+. -.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 3455677777777777777764222 23445556677777788888887777664311 011111122345556666655
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCC--CCCcchHHHHHHHHHhCCChHH-HHHHHHHH
Q 005305 486 DEAFALIRGAPFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGME--PEKLSNYVVLLNIYNSSGKLKE-AAEVIRTL 561 (703)
Q Consensus 486 ~~A~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~-A~~~~~~m 561 (703)
.+..++-.+....| |...--.+...+...|+.+.|...+-.++..+ -+|...-..|+.++.-.|.-|. +.+.+++|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 55555555554455 44444566666777777777776655555332 2344556667777766664443 33344433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.81 E-value=47 Score=37.60 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCCh-------HHHHHHHHHHHHhCCCCCcc
Q 005305 94 SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI-------REVKRVFSYMLSTGFEPDLY 166 (703)
Q Consensus 94 ~~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~-------~~a~~l~~~~~~~g~~~~~~ 166 (703)
+.+.|-.+--+.|.|++++|.++....... .......|...+..+....+- +....-+....+.....|++
T Consensus 111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIWALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHHHHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccHHHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 667787666699999999999999666554 466677888999998765332 24444455555443333554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.80 E-value=6 Score=39.92 Aligned_cols=62 Identities=15% Similarity=0.315 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCC--HHHHHHHHHHhHhhcCCCCchHHHHHHH
Q 005305 414 GEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGL--SERGWEIFQSMSRDHKIKPRAMHYACMI 476 (703)
Q Consensus 414 ~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li 476 (703)
.+.+..+|+.+.+.|+..+. .....+|..+..... +.++.++++.+.+ .++++...+|..+.
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lG 224 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHH
Confidence 35667778888877777654 334444443333222 3467777888877 68888887776543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.49 E-value=13 Score=33.78 Aligned_cols=134 Identities=18% Similarity=0.137 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcc-hHHHHHHHHHhCCChHHHHHHHccCC
Q 005305 114 LELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY-MRNRVLLMHVRCGMMIDARRLFDEMP 192 (703)
Q Consensus 114 ~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~~f~~m~ 192 (703)
++..+.+.+.+ ++|+...+..+++.+.+.|++..-.++. ..++-+|.. +...|+..- +....+.++=-.|.
T Consensus 14 lEYirSl~~~~-i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 14 LEYIRSLNQHN-IPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHH
Confidence 34455556677 8999999999999999999876554444 344445443 333333322 22233333333333
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 005305 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259 (703)
Q Consensus 193 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 259 (703)
.+=...+..++..+...|++-+|+++.+..... +...-..++.+..+.+|...-..++.....
T Consensus 86 kRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 86 KRLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222235667888899999999999998775322 223334556666666665555555544443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.69 E-value=20 Score=40.55 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=36.6
Q ss_pred hhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 005305 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454 (703)
Q Consensus 375 ~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 454 (703)
+-+.+.|+.++|...|-+....-.. ..+|.-|....+..+-..+++.+.+.|+. +...-+.||.+|.+.++.+.-.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 3334456666665555443211111 11344444444445555555555555544 22222345555556555555544
Q ss_pred HHH
Q 005305 455 IFQ 457 (703)
Q Consensus 455 ~~~ 457 (703)
+.+
T Consensus 453 fI~ 455 (933)
T KOG2114|consen 453 FIS 455 (933)
T ss_pred HHh
Confidence 443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.62 E-value=47 Score=36.24 Aligned_cols=381 Identities=10% Similarity=0.002 Sum_probs=203.3
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCCCCCcc-cHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAG-ICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDA 135 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~-~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 135 (703)
+-..|+.||.---..... +++ +.+++.+..+.|... -|-..-. -.+-|..+.+.++|++-... ++-+...|..
T Consensus 44 ~f~~wt~li~~~~~~~~~-~~~--r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~ 118 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDV-DAL--REVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLS 118 (577)
T ss_pred cccchHHHHhccCchhHH-HHH--HHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHH
Confidence 445667777654443344 444 888888877766655 3555555 67789999999999998764 6767777777
Q ss_pred HHHHHh-ccCChHHHHHHHHHHHHh-CCC-CCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHh---C
Q 005305 136 LISACI-GLRSIREVKRVFSYMLST-GFE-PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID---S 209 (703)
Q Consensus 136 ll~~~~-~~~~~~~a~~l~~~~~~~-g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~---~ 209 (703)
.+..+. ..|+.+..+.+|+.++.. |.. .+...|...|..-..++++.....+++.+.+--...++..-.-|.+ .
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 776555 557888889999988774 432 2345677777777788899999999988876434444443333322 2
Q ss_pred ------CChhHHHHHHHHhHHc----CCCCChhhHHHHHHHHhc-CCChHHHH------------------------HHH
Q 005305 210 ------GDYLEAFLLFLDLWEE----FSDCGSRTFATMIRASAG-LELISVGK------------------------QLH 254 (703)
Q Consensus 210 ------g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~~-~~~~~~a~------------------------~~~ 254 (703)
-..+++.++-...... -..+.......-++-... .+.++..+ ..+
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 1122222222211110 000111111111111111 11111111 111
Q ss_pred HHHHHhC-------CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---cccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 255 SCALKMG-------FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT---TVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 255 ~~~~~~g-------~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
+..++.- ..++...|...++.-.+.|+.+...-+|++..-+- ...|--.+.-....|+.+-|-.++..-.
T Consensus 279 E~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 279 EEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred hhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 1212111 12244577777777778888888888888766541 2234444443344477777766665554
Q ss_pred HCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHH---HHhhhcC--cCChh
Q 005305 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR---HVFDKML--CKNVI 399 (703)
Q Consensus 325 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~---~~f~~m~--~~~~~ 399 (703)
+--++-.+.+-..-..-+-..|+...|..+++.+...- +.-+.+-..-+.+-.+.|..+.+. .++.... ..+..
T Consensus 359 ~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 43333233222222222345677888888888777653 223333334455666677777766 3333221 12222
Q ss_pred hHHHHHHHHH-----hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 005305 400 SWNALIAGYG-----NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445 (703)
Q Consensus 400 ~~~~li~~~~-----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 445 (703)
..+.+..-++ -.++.+.|..++.+|.+. ..++..-|..++.-+..
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 2222322222 245566666666666653 33344445555544433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.37 E-value=39 Score=35.00 Aligned_cols=149 Identities=8% Similarity=0.000 Sum_probs=74.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc--hH
Q 005305 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP---NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR--AM 470 (703)
Q Consensus 396 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 470 (703)
....+|..+...+.+.|+++.|...+.++...+..+ +......-.......|+.++|...++...+. .+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345577778888888888888888888777643111 2223333344556667777887777766551 11111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHH------cCChhHHHHHHHHHhCCCCCCcchHHHHHH
Q 005305 471 HYACMIELLGREGLLDEAFAL-IRGAPFKTTKNMWAALLTACRV------NGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~a~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 543 (703)
....+...+.. ..+..... ......+.-...+..+..-+.. .++.+.+...++++.++.|+....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111100000 00000000 0000000001122222222223 367788888899999999887777777766
Q ss_pred HHHh
Q 005305 544 IYNS 547 (703)
Q Consensus 544 ~y~~ 547 (703)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.07 E-value=12 Score=32.03 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=56.8
Q ss_pred hHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcC--HHHHHHHHHHHHccCCH
Q 005305 376 FYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLN-GMRPN--HVTFLAVLSACSRSGLS 449 (703)
Q Consensus 376 ~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~--~~t~~~ll~a~~~~g~~ 449 (703)
+.+..|+++.|.+.|.+.. ..+...||.-..++.-+|+.++|++=+++..+. |-+-- ...|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4566777888888777653 346667787788888888888888877777663 32211 13344444556677777
Q ss_pred HHHHHHHHHhHh
Q 005305 450 ERGWEIFQSMSR 461 (703)
Q Consensus 450 ~~a~~~~~~m~~ 461 (703)
+.|+.=|+...+
T Consensus 132 d~AR~DFe~AA~ 143 (175)
T KOG4555|consen 132 DAARADFEAAAQ 143 (175)
T ss_pred HHHHHhHHHHHH
Confidence 777777776654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.85 E-value=25 Score=35.70 Aligned_cols=162 Identities=14% Similarity=0.088 Sum_probs=92.5
Q ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHHH-CCCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCchHH
Q 005305 299 GWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMD---HFTFSMIIRICTRLASLEHAKQAHAGLVRHG-----FGLDIVA 369 (703)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~ 369 (703)
+|-.+..++-+.-++.+++.+-+.-.. .|..|. -....++-.++...+.++++.+.|+.+.+.. .-....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555555554433222 122221 1123345566777777888888887776632 1123567
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhc-------CcCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCcC
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKM-------LCKNVI------SWNALIAGYGNHGRGEEAVELFEQMLL----NGMRPN 432 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m-------~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~ 432 (703)
+.+|...|.+..++++|.-+..+. .-.|.. +.-.|..++...|...+|.+.-++..+ .|-+|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 888888898888888876554433 222322 122344567777777777776665433 343333
Q ss_pred H-HHHHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 433 H-VTFLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 433 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
. .....+.+.|...|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 344455667778888888777666553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.82 E-value=4.7 Score=39.91 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=59.6
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCcCHHHHHH
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLL-----NGMRPNHVTFLA 438 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 438 (703)
..++..++..+..+|+.+.+.+.++++.. -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45677888899999999999999888854 3667899999999999999999999988875 466666655544
Q ss_pred HHHH
Q 005305 439 VLSA 442 (703)
Q Consensus 439 ll~a 442 (703)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.74 E-value=1.3 Score=29.99 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 536 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
.++..++..|.+.|++++|.+++++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 578899999999999999999999998654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.67 E-value=1.1e+02 Score=39.42 Aligned_cols=309 Identities=14% Similarity=0.098 Sum_probs=162.8
Q ss_pred HHhcCCChHHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHHHHHHHHhh-cCCCCcccHHHHHHHHHHcCCcHHH
Q 005305 240 ASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFDE-MSEKTTVGWNTIIAGYALHGYSEEA 316 (703)
Q Consensus 240 a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A 316 (703)
+-.+.+.+..|...++.-..... ......+..+...|+.-+++|....+... ...+ +...-|.-....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHHHH
Confidence 34445555566665554210000 11223444455577777777776666552 3332 233345556667888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHH-HhhHHhcCCHHHHHHHhhhcCc
Q 005305 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL-VDFYSKWGRIEDARHVFDKMLC 395 (703)
Q Consensus 317 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L-i~~y~k~g~~~~A~~~f~~m~~ 395 (703)
...|+++.+.+ ++...+++.++......+.+.......+..... ..+...-++++ +.+--+.++++....... .
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 88888887753 233667777777666666666665544433332 22223333332 344456677777666655 6
Q ss_pred CChhhHHHH-HH-HHHhc--CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHH----H------HHhHh
Q 005305 396 KNVISWNAL-IA-GYGNH--GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI----F------QSMSR 461 (703)
Q Consensus 396 ~~~~~~~~l-i~-~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~----~------~~m~~ 461 (703)
++..+|.+. +. ...+. .+.-.-.++.+.+++.-+.| +.+|+..|.+..+.++ + .....
T Consensus 1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777765 22 22221 11111112333333221111 2233333322222211 1 11111
Q ss_pred hcCCCCchHHHHH---HHHHHHhcCChHHHHHH---HHh----CCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005305 462 DHKIKPRAMHYAC---MIELLGREGLLDEAFAL---IRG----APFKT-----TKNMWAALLTACRVNGNLELGKFAAEK 526 (703)
Q Consensus 462 ~~~~~p~~~~~~~---li~~~~~~g~~~~A~~~---~~~----m~~~p-----~~~~~~~ll~a~~~~g~~~~a~~~~~~ 526 (703)
..+..++..+.+. ...-+.+.+....+.+- +++ ...+| -..+|......++..|.++.|..+.-+
T Consensus 1616 l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~ 1695 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLN 1695 (2382)
T ss_pred hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 1233333221110 00111122222222222 111 11122 245899999999999999999999888
Q ss_pred HhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 527 ~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
+.+..+ +..+.-.+..+...|+-..|..++++-.+...
T Consensus 1696 A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1696 AKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 877775 47899999999999999999999999886654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.66 E-value=57 Score=36.78 Aligned_cols=22 Identities=18% Similarity=0.304 Sum_probs=16.9
Q ss_pred HHHHHHhCCChhHHHHHHHHhH
Q 005305 202 IIAGMIDSGDYLEAFLLFLDLW 223 (703)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~ 223 (703)
|...|...+++..|+.++-..+
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 7777888888888888776654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.11 E-value=23 Score=32.21 Aligned_cols=133 Identities=12% Similarity=0.080 Sum_probs=78.7
Q ss_pred HHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHhC-CCHHHHHHHHhhcC
Q 005305 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF-GDNVFVSCALIDMYSKC-GSIEDAQGVFDEMS 293 (703)
Q Consensus 216 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~m~ 293 (703)
++..+.+.+.++.|+...+..++..+.+.|.+..-.++ +..++ +++..+...|++.-.+. .-..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45566666778888888888888888888877654443 33343 44444444444432211 01233444455443
Q ss_pred CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005305 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360 (703)
Q Consensus 294 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 360 (703)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...--.+++....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556777888888888888887764221 223334566666666666655555555544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.10 E-value=4.2 Score=36.37 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=38.0
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...++.+.++.++.-+.-+.|..+..-..-+.++...|+|++|.++++.+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 355667777777777777777777777777777777777777777777766544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.67 E-value=31 Score=32.99 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=33.1
Q ss_pred HHhcCChHHHHHHHHhCC---CCCCHHHHH---HHH--HHHHHc-CChhHHHHHHHHHhCCCCC
Q 005305 479 LGREGLLDEAFALIRGAP---FKTTKNMWA---ALL--TACRVN-GNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 479 ~~~~g~~~~A~~~~~~m~---~~p~~~~~~---~ll--~a~~~~-g~~~~a~~~~~~~~~~~p~ 533 (703)
-+..|++.+|.++|++.. ...+..-|. -++ ..|.-. .+.-.+..++++-.+++|.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 346788899999987642 122222222 112 223323 6666777888888888887
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.28 E-value=5.2 Score=35.17 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=45.0
Q ss_pred HcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 513 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
..++.+.++.+...+.-+.|+.+..-..-+.++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 477888888888888888888888888888889999999999999988876653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.21 E-value=16 Score=33.11 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=24.1
Q ss_pred hCCCHHHHHHHHhhcCCCCcccHHHHH-----HHHHHcCCcHHHHHHHHHHHHC
Q 005305 278 KCGSIEDAQGVFDEMSEKTTVGWNTII-----AGYALHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 278 ~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~ 326 (703)
+.+..++|..-|..+.+.+--+|-.|. ....+.|+...|...|.+.-..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 344455555555555544444443332 2234455555555555555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.96 E-value=51 Score=34.09 Aligned_cols=67 Identities=21% Similarity=0.375 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE----KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
...+|..+...+++.|+++.|...+.++....+. .+.....-+..+...|+-++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999876522 356677788999999999999999988876433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.73 E-value=17 Score=36.72 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHh--CC----ChHHHHHHHccCCC-------CCcccHHHHHHHHHhCCCh
Q 005305 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR--CG----MMIDARRLFDEMPE-------RNLVSCNMIIAGMIDSGDY 212 (703)
Q Consensus 146 ~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~--~g----~~~~A~~~f~~m~~-------~d~~~~~~li~~~~~~g~~ 212 (703)
++....+++.+.+.|+..+.+++-+..-.... .. ....|..+|+.|.+ ++-.++..|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566777888888887777666553333322 11 23446666666654 233444444443 22222
Q ss_pred ----hHHHHHHHHhHHcCCCCChh--hHHHHHHHHhcCCC--hHHHHHHHHHHHHhCCCCcHHHH
Q 005305 213 ----LEAFLLFLDLWEEFSDCGSR--TFATMIRASAGLEL--ISVGKQLHSCALKMGFGDNVFVS 269 (703)
Q Consensus 213 ----~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~ 269 (703)
+.+...|+.+.+.|...+.. ..+.+|..+....+ ...+..++..+.+.|++.....|
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~y 220 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHY 220 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccc
Confidence 34455566665555544322 22222222222211 22344455555555554444333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.50 E-value=97 Score=36.90 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=65.4
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 452 (703)
.++.--+.|.+.+|..++..=.++-.+.|.+...-+...+.+++|.-.|+..-+ ..-.+.+|...|+|+++
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 334444556666666555433333333444444444556677777666655322 11345677778888888
Q ss_pred HHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 005305 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498 (703)
Q Consensus 453 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 498 (703)
..+..++.. +-.--..+--.|+.-+...+++-+|-++..+....
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 888776643 11111223356777777788888887777765433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.23 E-value=4.9 Score=40.18 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=28.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHH
Q 005305 407 GYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGW 453 (703)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 453 (703)
-|.++|.+++|+..|..-.. +.| |.+++..-..||.+...+..|.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHH
Confidence 45667777777777766554 455 6677766666776665554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=84.20 E-value=2.4 Score=27.19 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQML 425 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~ 425 (703)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777777644
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.96 E-value=29 Score=30.48 Aligned_cols=113 Identities=16% Similarity=0.059 Sum_probs=62.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCC
Q 005305 407 GYGNHGRGEEAVELFEQMLLNGMRP--NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484 (703)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 484 (703)
...+.|++++|.+.|+.+...-..+ ....-..++.++.+.+++++|...+++.++.+.-.|++ .|.....+++.-..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHH
Confidence 3455677777777777776641111 22455566777777778888877777777755444443 34444444433222
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 485 ~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
.+..+.-|- ..+.|. +....|...+++++..-|++.
T Consensus 98 ~~~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEGSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 221111111 111121 224567777888888888753
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.37 E-value=4 Score=37.60 Aligned_cols=89 Identities=16% Similarity=0.045 Sum_probs=66.7
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 478 LLGREGLLDEAFALIRGA-PFKT------TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
-+.+.|++++|..-|... ..-| ..+.|..-..+..+.+..+.|.....+++++.|....+..--+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 345667777777666542 1111 233455555667788999999999999999999887788888899999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 005305 551 LKEAAEVIRTLRRKGL 566 (703)
Q Consensus 551 ~~~A~~~~~~m~~~~~ 566 (703)
+++|.+=++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999887543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.29 E-value=34 Score=30.73 Aligned_cols=90 Identities=17% Similarity=0.060 Sum_probs=50.6
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCchH-HHHHHHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChh
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAM-HYACMIELLGREGLLDEAFALIRGAPF-KTTKNMWAALLTACRVNGNLE 518 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~ 518 (703)
+.-.+.++.+++..++..+.- +.|... .-..-.-.+.+.|++.+|..+|+++.. .|....-.+|+.-|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 334456677777777777744 334322 222233445678888888888887643 334444456666665444433
Q ss_pred HHHHHHHHHhCCCCC
Q 005305 519 LGKFAAEKLYGMEPE 533 (703)
Q Consensus 519 ~a~~~~~~~~~~~p~ 533 (703)
.=.....++++..|+
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 334445555555543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.02 E-value=2.2 Score=42.44 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=77.4
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCC
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGLLDEAFALIRGAP-FK-TTKNMWAALLTACRVNGN 516 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~a~~~~g~ 516 (703)
.+-|.+.|.+++|...|..... +.| ++.++..-..+|.+..++..|+.-.+... .. .-...|.--..|-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4568889999999999887654 345 77788888888998888887776554421 11 112245555555566788
Q ss_pred hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005305 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 517 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 559 (703)
.++|..-++..++++|++.. |-..|++.....|+.-+.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIATK 219 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHHhh
Confidence 89999999999999998543 4455555555666554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.83 E-value=49 Score=32.20 Aligned_cols=157 Identities=18% Similarity=0.112 Sum_probs=87.8
Q ss_pred cccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCCcchHHHHH
Q 005305 95 AGICSQIEKLVLNKRYREALELFEILEFEGGFDV-GSSTYDALISACIGLRSIREVKRVFSYMLSTG-FEPDLYMRNRVL 172 (703)
Q Consensus 95 ~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g-~~~~~~~~~~Li 172 (703)
...|+..+.-.+.|++++|.+.|+.+..+....| ...+...++-++-+.++.++|....++.++.- -.||. -|-.-|
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHH
Confidence 3456666667789999999999999987541112 34556666777788999999999998888763 23333 343344
Q ss_pred HHHHhC-------CChHHHHHHHccCCC-----CCc------cc-----------HH-HHHHHHHhCCChhHHHHHHHHh
Q 005305 173 LMHVRC-------GMMIDARRLFDEMPE-----RNL------VS-----------CN-MIIAGMIDSGDYLEAFLLFLDL 222 (703)
Q Consensus 173 ~~y~~~-------g~~~~A~~~f~~m~~-----~d~------~~-----------~~-~li~~~~~~g~~~~A~~~~~~m 222 (703)
.+.+.. .+...++..|+.+.+ ||. .. ++ .+.+-|.+.|.+..|..-+++|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444322 334444444444432 221 11 01 2334566666666666666666
Q ss_pred HHcCCCCCh---hhHHHHHHHHhcCCChHHHHHH
Q 005305 223 WEEFSDCGS---RTFATMIRASAGLELISVGKQL 253 (703)
Q Consensus 223 ~~~g~~p~~---~t~~~ll~a~~~~~~~~~a~~~ 253 (703)
.+. ..-.. ..+..+..++-..|-.++|...
T Consensus 194 ~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 194 LEN-YPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred Hhc-cccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 654 11111 1333344445555555544443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.78 E-value=55 Score=32.80 Aligned_cols=75 Identities=5% Similarity=0.002 Sum_probs=39.9
Q ss_pred CchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005305 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444 (703)
Q Consensus 365 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 444 (703)
++..+-...+.++.+.|+.+-...+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 344555555555556655332222233333333 123466777777774 677777777753 456655555555553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.68 E-value=2.7 Score=26.24 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.33 E-value=8.6 Score=30.95 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 413 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
+.-++.+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3446666777777778899999999999999999999999999998875333 34556766654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.91 E-value=9.7 Score=31.02 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH
Q 005305 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478 (703)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 478 (703)
-+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 35566666666777889999999999999999999999999999887544 334477777653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=81.84 E-value=18 Score=33.38 Aligned_cols=94 Identities=16% Similarity=0.040 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCC--CCc----hHHH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEIFQSMSRDHKI--KPR----AMHY 472 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~----~~~~ 472 (703)
+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+.-.+++..+..+..++.....- .++ ...|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 334444455555555555555555544333333 23344444555555555555554444331100 011 1122
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC
Q 005305 473 ACMIELLGREGLLDEAFALIRGAP 496 (703)
Q Consensus 473 ~~li~~~~~~g~~~~A~~~~~~m~ 496 (703)
..+. +...|++.+|-+.|-...
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHccC
Confidence 2222 224577888777776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.80 E-value=2.6 Score=26.68 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=21.9
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhCCCHHHHH
Q 005305 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286 (703)
Q Consensus 256 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 286 (703)
.+++.. |.+..+|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344443 567788888888888888888875
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.72 E-value=1.5 Score=27.40 Aligned_cols=29 Identities=21% Similarity=0.135 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhCCCC
Q 005305 504 WAALLTACRVNGNLELGKFAAEKLYGMEP 532 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 532 (703)
|..+...+...|+.++|...+++.++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444555555555555555554444
|
... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.74 E-value=2.3 Score=24.89 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=19.6
Q ss_pred chHHHHHHHHHhCCChHHHHHHHH
Q 005305 536 SNYVVLLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 536 ~~~~~l~~~y~~~g~~~~A~~~~~ 559 (703)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356778889999999999988775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.14 E-value=14 Score=40.07 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=105.4
Q ss_pred CcccHHHHHH------HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcch
Q 005305 94 SAGICSQIEK------LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167 (703)
Q Consensus 94 ~~~~~~~li~------~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~ 167 (703)
|+++|..+++ ..-.|+++.|-.++..+. ....+.+...+.++|-.++|.++ ...||.
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~-------s~D~d~-- 642 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALEL-------STDPDQ-- 642 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhc-------CCChhh--
Confidence 7787766655 234566776666554433 22344555556666655555442 223332
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCCh
Q 005305 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247 (703)
Q Consensus 168 ~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 247 (703)
-.....+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|...+. |.+|+-.+...|+-
T Consensus 643 ---rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~ 708 (794)
T KOG0276|consen 643 ---RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNA 708 (794)
T ss_pred ---hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCCh
Confidence 234455789999999887554 4677899999999999999999999986543 66777777777877
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 005305 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292 (703)
Q Consensus 248 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 292 (703)
+....+-....+.| .. |.-.-+|...|+++++.+++.+-
T Consensus 709 ~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 709 EGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 76666656666655 22 22233566678888888877654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.13 E-value=7.8 Score=38.37 Aligned_cols=61 Identities=21% Similarity=0.295 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
++..++.++...|+.+.+...+++++..+|-+-..|..|+.+|.+.|+...|...++++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556667777778888888888888899998888899999999999999999999988875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 2e-12
Identities = 65/428 (15%), Positives = 128/428 (29%), Gaps = 124/428 (28%)
Query: 34 GKSLLSGCYFSLDKRKWKRSFQ----RVECC-----LME--QGLKPRPKPNKIYTEELKE 82
GK+ ++ K + K F+ ++ C ++E Q L + PN +T
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDH 219
Query: 83 SSLPDTQMKKPSAGICSQIEKLVLNKRYREALELF-------EILEFEGGFDVGS----S 131
SS K I +++ +L+ +K Y L L + F++ +
Sbjct: 220 SSNI----KLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWN---AFNLSCKILLT 271
Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
T ++ + S + S PD +LL ++ C + L E+
Sbjct: 272 TRFKQVTDFL---SAATTTHISLDHHSMTLTPDEVKS--LLLKYLDC----RPQDLPREV 322
Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS-AGLELISVG 250
N ++I + D L W+ + T+I +S LE
Sbjct: 323 LTTNPRRLSIIAESIRD----------GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV--GWNTIIAGYA 308
K ++ F + + L+ + D V +++ + + V +
Sbjct: 373 KMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--IS 427
Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
+ +Y E++ LE+ H
Sbjct: 428 IP-------SIYLELK---------------------VKLENEYALHR------------ 447
Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY-----GNH----GRGEEAVE 419
++VD Y+ K + + L Y G+H E +
Sbjct: 448 ---SIVDHYN-----------IPKTFDSDDLIPPYL-DQYFYSHIGHHLKNIEHPER-MT 491
Query: 420 LFEQMLLN 427
LF + L+
Sbjct: 492 LFRMVFLD 499
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.5 bits (168), Expect = 3e-12
Identities = 23/173 (13%), Positives = 53/173 (30%), Gaps = 7/173 (4%)
Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
R + + +++ SL+ + + A +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 383 IEDARHVFDKM-------LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
+ A H+ + +NA++ G+ G +E V + + G+ P+ ++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
+ A L R E +K +A+ A ++ R +L
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.6 bits (158), Expect = 4e-11
Identities = 27/199 (13%), Positives = 70/199 (35%), Gaps = 8/199 (4%)
Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQ---AHAGLVRHGFGLDIVANSALVDFYSK 379
+ + + C L A H G + L + +A++ +++
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 380 WGRIEDARHVFDKM----LCKNVISWNALIAGYGNHGRGEEAVE-LFEQMLLNGMRPNHV 434
G ++ +V + L +++S+ A + G + +E EQM G++ +
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
+LS R+ + + ++ + S ++ P + ++ ++G + +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
Query: 495 APFKTTKNMWAALLTACRV 513
+ + A RV
Sbjct: 298 KTLQCLFEKQLHMELASRV 316
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 9e-09
Identities = 15/131 (11%), Positives = 45/131 (34%), Gaps = 8/131 (6%)
Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVG-------WNTIIAGYALHGYSEEALDLYYEM 323
A + A + + +N ++ G+A G +E + + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 324 RDSGVKMDHFTFSMIIRICTRL-ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
+D+G+ D +++ ++ R ++ + + G L + + L+ +
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 383 IEDARHVFDKM 393
++ V
Sbjct: 252 LKAVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.8 bits (117), Expect = 3e-06
Identities = 18/193 (9%), Positives = 53/193 (27%), Gaps = 10/193 (5%)
Query: 64 QGLKPRPKPNKIYTEELKESSLPDTQM--KKPSAGICSQIEKLVLNKRYREALELFEILE 121
+ + +P ++ ++++ T+ + P +++ + K + +
Sbjct: 60 LTRRLQVEP-RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 122 FEGGFDVGSSTYDALISACIGLRSIREVKRVFSY---MLSTGFEPDLYMRNRVLLMHVRC 178
+ A C+ + + L M N V+L R
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 179 GMMIDARRLFDEMPER----NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF 234
G + + + + +L+S + M L+ + F
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 235 ATMIRASAGLELI 247
++ + +
Sbjct: 239 TAVLLSEEDRATV 251
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 30/250 (12%), Positives = 70/250 (28%), Gaps = 17/250 (6%)
Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
++ ++ ++ S + D + R ++ ++ A
Sbjct: 16 QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVV----LDEIKPSSAPELQAVRMF 71
Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNA---LIAG--YGNHGRGEEAVELFEQMLLNG 428
++ + R + D+ + ++V N L+A Y + A+ Q
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
V L L R L+ + + Q D + L L +A
Sbjct: 132 CMAMTVQILLKLD---RLDLARKELKKMQDQDEDA---TLTQLATAWVSLAAGGEKLQDA 185
Query: 489 FALIRGAPFKTTKNM--WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
+ + + K + + G E + ++ + + L+ +
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245
Query: 547 SSGKLKEAAE 556
GK E
Sbjct: 246 HLGKPPEVTN 255
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 36/199 (18%), Positives = 58/199 (29%), Gaps = 24/199 (12%)
Query: 401 WNALIAG-YGNHGRGEEAVELFEQML---LNGMRPNHVTFLAVLSACSRS----GLSERG 452
+NAL A N G +EA L + L G + + +VL S
Sbjct: 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLAL 75
Query: 453 WEIFQSMSRDHKIKPRAMHYACMI-ELLGREGLLDEAFALIRGA-----PFKTTKNMWAA 506
+ + M+R H + A+ E+L +G L A+ A +
Sbjct: 76 MQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135
Query: 507 LLTACRVNGNLELGKF-AAEKLY---------GMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
L R + AE ++L +L+ + G L A
Sbjct: 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS 195
Query: 557 VIRTLRRKGLRMLPACSWI 575
+ L WI
Sbjct: 196 QLNRLENLLGNGKYHSDWI 214
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 40.7 bits (94), Expect = 4e-04
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 9/31 (29%)
Query: 78 EELK--ESSL----PDTQMKKPSAGICSQIE 102
+ LK ++SL D+ P+ I + +E
Sbjct: 20 QALKKLQASLKLYADDS---APALAIKATME 47
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 703 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.45 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.44 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.42 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.39 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.38 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.38 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.38 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.38 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.38 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.37 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.37 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.36 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.33 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.33 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.33 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.28 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.27 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.27 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.26 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.23 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.18 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.18 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.17 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.17 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.14 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.12 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.11 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.08 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.04 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.04 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.03 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.02 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.02 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.0 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.88 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.88 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.84 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.8 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.79 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.76 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.74 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.72 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.71 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.7 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.7 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.68 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.66 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.63 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.58 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.57 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.56 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.54 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.54 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.53 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.51 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.47 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.46 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.46 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.46 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.46 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.45 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.44 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.43 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.43 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.42 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.42 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.41 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.4 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.39 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.37 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.37 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.34 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.32 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.31 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.31 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.3 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.27 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.25 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.21 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.2 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.19 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.18 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.15 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.14 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.14 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.13 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.12 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.12 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.11 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.11 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.09 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.09 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.08 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.07 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.06 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.05 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.05 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.03 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.03 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.03 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.0 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.0 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.99 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.96 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.95 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.94 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.89 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.89 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.87 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.87 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.87 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.86 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.85 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.84 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.78 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.77 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.76 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.75 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.75 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.75 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.73 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.73 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.72 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.72 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.66 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.66 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.63 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.61 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.58 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.58 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.58 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.56 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.5 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.49 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.48 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.43 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.39 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.38 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.37 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.34 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.29 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.27 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.17 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.15 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.15 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.02 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.96 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.91 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.82 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.76 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.65 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.52 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.39 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.37 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.28 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.24 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.2 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.09 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.04 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.97 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.68 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.55 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.52 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.51 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.51 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.45 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.22 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.97 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.47 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.38 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.11 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.92 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.59 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.25 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 90.77 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.18 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 89.91 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 88.79 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.32 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.62 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.6 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 84.88 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 84.11 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.87 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 82.52 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.68 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.52 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.96 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.73 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-42 Score=384.42 Aligned_cols=485 Identities=10% Similarity=-0.017 Sum_probs=401.9
Q ss_pred hccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 005305 64 QGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIG 142 (703)
Q Consensus 64 ~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~ 142 (703)
.....+.+++....+ +..|+.+|.+ ++..|+.++. +.+.|++++|+.+|++|... .|+..++..+..+|..
T Consensus 58 ~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~ 129 (597)
T 2xpi_A 58 YLANNTSTDGSFLKE---RNAQNTDSLS--REDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCC 129 (597)
T ss_dssp GGC------------------------C--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHH
T ss_pred hhcccccccCccCCC---CCccccchHH--HHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHH
Confidence 344557778888888 9999999876 9999999999 99999999999999999864 5788999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCC-------------------CcccHHHHH
Q 005305 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-------------------NLVSCNMII 203 (703)
Q Consensus 143 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-------------------d~~~~~~li 203 (703)
.|++++|.++++.+... ++++.+++.++.+|.++|++++|+++|+++... ++.+|+.++
T Consensus 130 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (597)
T 2xpi_A 130 TGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207 (597)
T ss_dssp TTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHH
Confidence 99999999999988654 688999999999999999999999999955433 478999999
Q ss_pred HHHHhCCChhHHHHHHHHhHHcCCCCC-hhhHHHHHHHHhcCCChHHH--HHH-HHHHHHhCCCCcHHHHHHHHHHHHhC
Q 005305 204 AGMIDSGDYLEAFLLFLDLWEEFSDCG-SRTFATMIRASAGLELISVG--KQL-HSCALKMGFGDNVFVSCALIDMYSKC 279 (703)
Q Consensus 204 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~Li~~y~~~ 279 (703)
.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+...+..+.. ..+ +..+...+......+++.++.+|.+.
T Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 208 QVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998864 43 33444444433332222111 111 33444444445566778889999999
Q ss_pred CCHHHHHHHHhhcCC--CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 005305 280 GSIEDAQGVFDEMSE--KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357 (703)
Q Consensus 280 g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 357 (703)
|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.++...|+.++|..++..
T Consensus 286 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 286 DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999987 789999999999999999999999999999865 34778899999999999999999999999
Q ss_pred HHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH
Q 005305 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434 (703)
Q Consensus 358 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 434 (703)
+.+.. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ .++..
T Consensus 365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 442 (597)
T 2xpi_A 365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHL 442 (597)
T ss_dssp HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSH
T ss_pred HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchH
Confidence 99764 4578899999999999999999999999884 3568899999999999999999999999999853 33678
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHH
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-------PFKTT--KNMWA 505 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~ 505 (703)
++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|.
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 9999999999999999999999999873 3457889999999999999999999999886 55777 78999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 506 ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 506 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
.++.+|...|++++|...++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998643
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=356.23 Aligned_cols=480 Identities=8% Similarity=-0.029 Sum_probs=411.8
Q ss_pred chhhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 005305 57 VECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDA 135 (703)
Q Consensus 57 ~~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 135 (703)
.++..++.++..|.+.|++.+| ..+|+++....||..+|+.+.. |.+.|++++|+.+|+.+.. .+++..+++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A---~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~ 155 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCA---AFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYL 155 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHH---HHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHH
Confidence 4778899999999999999999 9999998766678899999999 9999999999999999865 3678999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHh---------------CCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCC---cc
Q 005305 136 LISACIGLRSIREVKRVFSYMLST---------------GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN---LV 197 (703)
Q Consensus 136 ll~~~~~~~~~~~a~~l~~~~~~~---------------g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d---~~ 197 (703)
++.++.+.|++++|.++++.+... |.+++..+++.++.+|.+.|++++|+++|++|.+.+ ..
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 999999999999999999853211 223357899999999999999999999999997633 34
Q ss_pred cHHHHHHHHHhCCChhHHHH--H-HHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 005305 198 SCNMIIAGMIDSGDYLEAFL--L-FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274 (703)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 274 (703)
.|..+...+...+..+.+.. + +..+...+..++..+|..++..+.+.|++++|.+++..+.+. +++..+++.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 45555554444333222221 1 555555555556667788888999999999999999998766 589999999999
Q ss_pred HHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHH
Q 005305 275 MYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351 (703)
Q Consensus 275 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 351 (703)
+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|++|.+.. +.+..++..+...+.+.|++++|
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999853 477899999999999999999999999998653 55788999999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005305 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428 (703)
Q Consensus 352 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 428 (703)
.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+..
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999864 3368899999999999999999999999884 3478899999999999999999999999999863
Q ss_pred CCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhc---CCCCc--hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CH
Q 005305 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH---KIKPR--AMHYACMIELLGREGLLDEAFALIRGAP-FKT-TK 501 (703)
Q Consensus 429 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~ 501 (703)
..+..+|..+...|.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++. ..| +.
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 3367899999999999999999999999997732 66787 7899999999999999999999998852 234 78
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 005305 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 502 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 547 (703)
.+|..+..+|...|++++|...++++++++|+++..|..|+++|..
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=254.63 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=167.2
Q ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC---------HHHHHHHHHHHHHcCCCCchH
Q 005305 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS---------LEHAKQAHAGLVRHGFGLDIV 368 (703)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 368 (703)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcC----cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKML----CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 444 (703)
+||+||++|++.|++++|.++|++|. .||.++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999984 57999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhc
Q 005305 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482 (703)
Q Consensus 445 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 482 (703)
+.|++++|.++|++|.+ .+..|+..+|+.+++.|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999987 69999999999999988754
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-27 Score=253.33 Aligned_cols=211 Identities=11% Similarity=0.016 Sum_probs=170.1
Q ss_pred HHHHHHHHhHHcCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 005305 214 EAFLLFLDLWEEFSDCGS-RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292 (703)
Q Consensus 214 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 292 (703)
.+..+.+++.+.+..+.+ ..+..+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 345556666666655443 346777788888888888888888888888888888888888877776653221
Q ss_pred CCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHH
Q 005305 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372 (703)
Q Consensus 293 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 372 (703)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|+++.|.+++++|.+.|+.||..+||+
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 12445688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHhcCCHHHHHHHhhhc----CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc
Q 005305 373 LVDFYSKWGRIEDARHVFDKM----LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 446 (703)
||.+|++.|++++|.++|++| ..||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999 46899999999999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-24 Score=228.29 Aligned_cols=372 Identities=12% Similarity=0.065 Sum_probs=235.6
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhH
Q 005305 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLE 214 (703)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~ 214 (703)
..+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.... .+..+|+.+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34455666666666666666553 33334445555566666666666666654432 344456666666666666666
Q ss_pred HHHHHHHhHHcCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 005305 215 AFLLFLDLWEEFSDCG-SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293 (703)
Q Consensus 215 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 293 (703)
|++.|+++.+. .|+ ..++..+..++...|++++|.+.+..+++.. +.+..++..+...|.
T Consensus 86 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~---------------- 146 (388)
T 1w3b_A 86 AIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLK---------------- 146 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH----------------
Confidence 66666665543 222 2234444444555555555555554444433 222333444444444
Q ss_pred CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 005305 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373 (703)
Q Consensus 294 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 373 (703)
..|++++|.+.|+++.+.. +.+..++..+...+...|+++.|...++.+++.+. .+...+..+
T Consensus 147 ---------------~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 209 (388)
T 1w3b_A 147 ---------------ALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINL 209 (388)
T ss_dssp ---------------TTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred ---------------HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 4444444444444444331 11233444444444455555555555555544332 234556666
Q ss_pred HhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCH
Q 005305 374 VDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLS 449 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 449 (703)
...|...|++++|...|++.. ..+..+|..+...|...|++++|+..|+++.+. .|+ ..++..+..++.+.|++
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCH
Confidence 677777777777777777653 235667788888888888888888888888874 443 46777888888888888
Q ss_pred HHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 450 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
++|...|+.+.+. .+++...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++
T Consensus 288 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 288 AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888772 4566778888888888888888888888874 3334 4678888888889999999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHhCCC
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
++++|+++..|..++.+|...|+
T Consensus 366 ~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 366 IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhhCCCCHHHHHhHHHHHHHccC
Confidence 99999988888888888877663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-23 Score=222.50 Aligned_cols=353 Identities=18% Similarity=0.136 Sum_probs=304.3
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHcCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC
Q 005305 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCG-SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280 (703)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 280 (703)
+...+.+.|++++|+..+.++.+. .|+ ...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345667889999999999888765 344 4456666677788899999999998888875 678889999999999999
Q ss_pred CHHHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCCHHHHHHHHH
Q 005305 281 SIEDAQGVFDEMSE--K-TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH-FTFSMIIRICTRLASLEHAKQAHA 356 (703)
Q Consensus 281 ~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~ 356 (703)
++++|.+.|+++.. | +..+|..+...+.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|...+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998753 3 4557999999999999999999999999886 4554 456667777888999999999999
Q ss_pred HHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-
Q 005305 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN- 432 (703)
Q Consensus 357 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 432 (703)
.+++... .+..+++.+...|.+.|++++|...|+++.. .+...|..+...+...|++++|+..|++.... .|+
T Consensus 160 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 236 (388)
T 1w3b_A 160 KAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH 236 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC
Confidence 9998743 3678899999999999999999999999843 35668899999999999999999999999885 554
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 005305 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP--FKTTKNMWAALLTA 510 (703)
Q Consensus 433 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a 510 (703)
..++..+..++...|++++|...|+.+.+. -+.+...|..+...|.+.|++++|.+.++++. .+++..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 688889999999999999999999999872 33457789999999999999999999998752 24578899999999
Q ss_pred HHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 511 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+...|++++|...++++++..|+++..|..++.+|.+.|++++|.+.++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999853
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=214.97 Aligned_cols=434 Identities=10% Similarity=-0.046 Sum_probs=214.6
Q ss_pred ccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 005305 96 GICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLM 174 (703)
Q Consensus 96 ~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~ 174 (703)
..|...-. +.+.|++++|+..|+++.... ||..+|..+..++...|++++|.+.++.+++.+ +.+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 34555566 888999999999999998865 688889999999999999999999999998875 4556788888889
Q ss_pred HHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHH
Q 005305 175 HVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251 (703)
Q Consensus 175 y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 251 (703)
|.+.|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-..............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 9999999999988887643 2334444444444443333333333333222222222211111000000000000000
Q ss_pred HHHHHHHHhCC---------CCcHHHHHHHHHHHHh---CCCHHHHHHHHhhcCC----------------C-CcccHHH
Q 005305 252 QLHSCALKMGF---------GDNVFVSCALIDMYSK---CGSIEDAQGVFDEMSE----------------K-TTVGWNT 302 (703)
Q Consensus 252 ~~~~~~~~~g~---------~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~m~~----------------~-~~~~~~~ 302 (703)
.+...+..... +.+...+..+...+.. .|++++|...|+++.+ + +...|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 00000000000 1122333333333332 4555555555554332 0 1234444
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCC
Q 005305 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382 (703)
Q Consensus 303 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 382 (703)
+...+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+++... .+..++..+...|.+.|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCC
Confidence 5555555555555555555555432 2244444444555555555555555555544321 233444555555555555
Q ss_pred HHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 005305 383 IEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQS 458 (703)
Q Consensus 383 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 458 (703)
+++|...|++.. ..+...|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|...++.
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555555442 123344555555555555555555555555443 22 224444444555555555555555555
Q ss_pred hHhhcCCCCc----hHHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhC
Q 005305 459 MSRDHKIKPR----AMHYACMIELLGR---EGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYG 529 (703)
Q Consensus 459 m~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 529 (703)
+.+...-.++ ...+..+...|.+ .|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4432111111 2244455555555 55555555555442 1112 334445555555555555555555555555
Q ss_pred CCCCCcchH
Q 005305 530 MEPEKLSNY 538 (703)
Q Consensus 530 ~~p~~~~~~ 538 (703)
+.|+++..+
T Consensus 478 ~~~~~~~~~ 486 (514)
T 2gw1_A 478 LARTMEEKL 486 (514)
T ss_dssp HCSSHHHHH
T ss_pred hccccHHHH
Confidence 555544433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-20 Score=203.42 Aligned_cols=335 Identities=11% Similarity=0.040 Sum_probs=236.9
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 005305 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274 (703)
Q Consensus 195 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 274 (703)
++..|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34556666666667777777777776665542 2245556666666666666666666666666654 445666667777
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCc------ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH
Q 005305 275 MYSKCGSIEDAQGVFDEMSEKTT------VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348 (703)
Q Consensus 275 ~y~~~g~~~~A~~~f~~m~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 348 (703)
+|.+.|++++|.+.|+++.+.++ ..|..++..+...+ +..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCH
Confidence 77777777777777776654322 44444443321111 11122234455666
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005305 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQML 425 (703)
Q Consensus 349 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 425 (703)
+.|...+..+++.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666543 2356777888888888888888888888774 3467788888899999999999999999888
Q ss_pred HcCCCcCH-HHHHHH------------HHHHHccCCHHHHHHHHHHhHhhcCCCCc-----hHHHHHHHHHHHhcCChHH
Q 005305 426 LNGMRPNH-VTFLAV------------LSACSRSGLSERGWEIFQSMSRDHKIKPR-----AMHYACMIELLGREGLLDE 487 (703)
Q Consensus 426 ~~g~~p~~-~t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~ 487 (703)
.. .|+. ..+..+ ..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 64 4544 333333 78899999999999999999873 344 4588999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHH------------HHHHhCC----
Q 005305 488 AFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL------------NIYNSSG---- 549 (703)
Q Consensus 488 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~y~~~g---- 549 (703)
|.+.++++ ...| +...|..+..+|...|++++|...++++++++|+++..+..+. +.|...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 99999885 3344 6789999999999999999999999999999999999999998 4466666
Q ss_pred -ChHHHHHHHHH
Q 005305 550 -KLKEAAEVIRT 560 (703)
Q Consensus 550 -~~~~A~~~~~~ 560 (703)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 44556666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-21 Score=210.94 Aligned_cols=393 Identities=11% Similarity=-0.048 Sum_probs=313.3
Q ss_pred chHHHHHHHHHhCCChHHHHHHHccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc
Q 005305 166 YMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243 (703)
Q Consensus 166 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 243 (703)
..+..+...|.+.|++++|+..|+++.. ||..+|..+..+|.+.|++++|+..|+++.+... .+..++..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHH
Confidence 3566677889999999999999998864 7888999999999999999999999999987642 256688889999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHH----------------------------------
Q 005305 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF---------------------------------- 289 (703)
Q Consensus 244 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f---------------------------------- 289 (703)
.|++++|...+..+.+.+ +++......++..+.+......+.+.+
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999998876 334444444444443322222222222
Q ss_pred ----hhcCC---------C-CcccHHHHHHHHHH---cCCcHHHHHHHHHHHH-----CCCCC--------CHhhHHHHH
Q 005305 290 ----DEMSE---------K-TTVGWNTIIAGYAL---HGYSEEALDLYYEMRD-----SGVKM--------DHFTFSMII 339 (703)
Q Consensus 290 ----~~m~~---------~-~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p--------d~~t~~~ll 339 (703)
..... + +...|......+.. .|++++|+..|+++.+ ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11110 0 12334444444444 8999999999999987 32122 345677778
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHH
Q 005305 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEE 416 (703)
Q Consensus 340 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 416 (703)
..+...|+++.|...+..+++.... ..++..+...|...|++++|...|+++.. .+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999997654 88899999999999999999999998743 467789999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-
Q 005305 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA- 495 (703)
Q Consensus 417 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 495 (703)
|+..|+++.+.... +..++..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999985322 4578888889999999999999999999873 3345678889999999999999999999874
Q ss_pred ---CCCCC----HHHHHHHHHHHHH---cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 496 ---PFKTT----KNMWAALLTACRV---NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 496 ---~~~p~----~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+..|+ ...|..+...+.. .|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22222 3488899999999 9999999999999999999999999999999999999999999999988643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-20 Score=207.07 Aligned_cols=419 Identities=11% Similarity=0.000 Sum_probs=270.4
Q ss_pred ccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 005305 96 GICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLM 174 (703)
Q Consensus 96 ~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~ 174 (703)
..|..+.. +.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+...
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 45666667 999999999999999999875 5678889999999999999999999999999876 5567788888999
Q ss_pred HHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcC------CCCChhhHHHHHHHHhcCCChH
Q 005305 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF------SDCGSRTFATMIRASAGLELIS 248 (703)
Q Consensus 175 y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~ 248 (703)
|.+.|++++|+..|+.+. .+....+..+..+...+...+|+..++++.... ..|+...
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~--------------- 166 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS--------------- 166 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH---------------
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH---------------
Confidence 999999999999996443 233333334555566666678888888775431 1222222
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcc---cHHHHHHHHH--------HcCCcHHHH
Q 005305 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV---GWNTIIAGYA--------LHGYSEEAL 317 (703)
Q Consensus 249 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~--------~~g~~~~A~ 317 (703)
+..|....+.+.+...+......+.. .+..+...+. ..|++++|+
T Consensus 167 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 167 ------------------------LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp ------------------------HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 22233334444444444443333222 1122211111 123556666
Q ss_pred HHHHHHHHCCCCCC--------HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHH
Q 005305 318 DLYYEMRDSGVKMD--------HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389 (703)
Q Consensus 318 ~l~~~m~~~g~~pd--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 389 (703)
.+|+++.+. .|+ ..++..+...+...|+++.|...+..+++.. |+..++..+...|.+.|++++|...
T Consensus 223 ~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 223 DMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHH
Confidence 666666543 222 1123444445556666667776666666653 3355666666677777777777777
Q ss_pred hhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCC
Q 005305 390 FDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465 (703)
Q Consensus 390 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 465 (703)
|+++. ..+..+|..+...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+++.+.+. .
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~ 374 (537)
T 3fp2_A 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--F 374 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 76653 234566777777777777777777777777764 233 356666777777777777777777777662 2
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHHc----------CChhHHHHHHHHH
Q 005305 466 KPRAMHYACMIELLGREGLLDEAFALIRGAP----FKT----TKNMWAALLTACRVN----------GNLELGKFAAEKL 527 (703)
Q Consensus 466 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p----~~~~~~~ll~a~~~~----------g~~~~a~~~~~~~ 527 (703)
+.+...+..+...|.+.|++++|.+.++++. ..+ ....+..+...+... |++++|...++++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 3445567777777777777777777776531 011 122233444556666 8888888888888
Q ss_pred hCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
++..|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88888888888888888888899888888888877543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-19 Score=193.72 Aligned_cols=365 Identities=12% Similarity=0.028 Sum_probs=230.9
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li 172 (703)
+...|..+.. +.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5567888888 999999999999999998864 5678889999999999999999999999999876 45577888889
Q ss_pred HHHHhCCChHHHHHHHccCCCCC---c---ccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCC
Q 005305 173 LMHVRCGMMIDARRLFDEMPERN---L---VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246 (703)
Q Consensus 173 ~~y~~~g~~~~A~~~f~~m~~~d---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 246 (703)
..|.+.|++++|.+.|+++.+.+ . ..|..++..+...+ +..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 99999999999999998876532 2 55666654421111 1111222333444
Q ss_pred hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHH
Q 005305 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEM 323 (703)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 323 (703)
+++|...+..+++.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444544444444433 33455555555666666666666665555432 24455666666666666666666666666
Q ss_pred HHCCCCCCHh-hHHHH------------HHHHhccCCHHHHHHHHHHHHHcCCCCc---hHHHHHHHhhHHhcCCHHHHH
Q 005305 324 RDSGVKMDHF-TFSMI------------IRICTRLASLEHAKQAHAGLVRHGFGLD---IVANSALVDFYSKWGRIEDAR 387 (703)
Q Consensus 324 ~~~g~~pd~~-t~~~l------------l~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~ 387 (703)
... .|+.. .+..+ ...+...|++++|...+..+++...... ..++..+..+|.+.|++++|.
T Consensus 238 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 543 23222 22222 5566667777777777777766432211 336667777777777777777
Q ss_pred HHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHH------------HHHHccC----
Q 005305 388 HVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVL------------SACSRSG---- 447 (703)
Q Consensus 388 ~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll------------~a~~~~g---- 447 (703)
..++++. ..+...|..+..+|...|++++|+..|+++.+ +.|+. ..+..+. ..|...|
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 7777763 23566777777777777888888888877776 45554 3333333 1233444
Q ss_pred -CHHHHHHHHHHhHhhcC--CCCc-------hHHHHHHHHHHHhcCChHHHH
Q 005305 448 -LSERGWEIFQSMSRDHK--IKPR-------AMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 448 -~~~~a~~~~~~m~~~~~--~~p~-------~~~~~~li~~~~~~g~~~~A~ 489 (703)
..+++.+.++.+..... ..|+ ...+..+..+|...|+.+++.
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 55667777765322111 0111 236777888888887776543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-18 Score=189.55 Aligned_cols=435 Identities=10% Similarity=-0.001 Sum_probs=302.4
Q ss_pred hhhhhccccccCCCCcccchhhcccccCccCCCC-CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHH
Q 005305 60 CLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKP-SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALI 137 (703)
Q Consensus 60 ~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p-~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll 137 (703)
..+..+-..|.+.|++.+| ...|.+.....| +...|..+.. +.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 100 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEA---IKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-C---HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHH---HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 4455566677778999999 999988766544 5566777777 999999999999999999876 56788899999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCC------CcccHHHHHHHHHhCCC
Q 005305 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER------NLVSCNMIIAGMIDSGD 211 (703)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~------d~~~~~~li~~~~~~g~ 211 (703)
.++...|++++|...++ .... .|+. .+..+..+...+....|...++++... .....+..+..+....+
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999999996 4332 2332 223344555666778899888887542 22334455666777777
Q ss_pred hhHHHHHHHHhHHcCCCCChhhHHHHHH-HHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHh
Q 005305 212 YLEAFLLFLDLWEEFSDCGSRTFATMIR-ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290 (703)
Q Consensus 212 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 290 (703)
.+.++..+..... ..+....+...+. .+...+ -......|++++|..+|+
T Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 176 SHLEVSSVNTSSN--YDTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp HHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHH
Confidence 7766655443321 1111111111111 111110 000111234566666666
Q ss_pred hcCCCCc----------ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005305 291 EMSEKTT----------VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360 (703)
Q Consensus 291 ~m~~~~~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 360 (703)
++.+.++ .+|..+...+...|++++|+..|++..+. .|+...+..+...+...|+++.|...+..+++
T Consensus 227 ~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 227 SLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp HHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 5543221 13555566777888888888888888875 45567777788888888889999988888888
Q ss_pred cCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHH
Q 005305 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTF 436 (703)
Q Consensus 361 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 436 (703)
... .+..++..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|+++.+. .|+ ...+
T Consensus 305 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 381 (537)
T 3fp2_A 305 LNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVP 381 (537)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHH
T ss_pred cCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 653 367788888999999999999999998874 345678888999999999999999999999885 343 4678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCC----chHHHHHHHHHHHhc----------CChHHHHHHHHhC-CCC-CC
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKP----RAMHYACMIELLGRE----------GLLDEAFALIRGA-PFK-TT 500 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~m-~~~-p~ 500 (703)
..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |++++|...|++. ... .+
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 8888889999999999999998866321111 122344556677777 9999999999874 223 35
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchH
Q 005305 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 501 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
...|..+...+...|++++|...+++++++.|++....
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 77899999999999999999999999999999876543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-16 Score=164.87 Aligned_cols=305 Identities=11% Similarity=0.018 Sum_probs=197.0
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHH
Q 005305 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGY 307 (703)
Q Consensus 231 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 307 (703)
...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456666677777777888887777777764 45566777777777777777777777776543 2445677777777
Q ss_pred HHcCCcHHHHHHHHHHHHCCCCC---C-HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCH
Q 005305 308 ALHGYSEEALDLYYEMRDSGVKM---D-HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383 (703)
Q Consensus 308 ~~~g~~~~A~~l~~~m~~~g~~p---d-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 383 (703)
...|++++|+..|++..+. .| + ...+..+.... .......+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCH
Confidence 7777777777777777664 33 2 22222221000 001122234556666667
Q ss_pred HHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 384 EDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 384 ~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. ..+..++..+...+...|++++|...|+...
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77766666653 2345566666666677777777777777666532 2244566666666667777777777776665
Q ss_pred hhcCCCCchHHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCChhHHHH
Q 005305 461 RDHKIKPRAMHYA------------CMIELLGREGLLDEAFALIRGA-PFKTT-K----NMWAALLTACRVNGNLELGKF 522 (703)
Q Consensus 461 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~a~~~~g~~~~a~~ 522 (703)
+.. +.+...+. .+...+.+.|++++|.+.+++. ...|+ . ..+..+...+...|++++|..
T Consensus 216 ~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 521 12222222 2356677888888888888763 22333 2 224456677788888888888
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 523 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
.++++++.+|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888887753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-16 Score=163.88 Aligned_cols=325 Identities=9% Similarity=-0.004 Sum_probs=233.9
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 005305 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274 (703)
Q Consensus 195 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 274 (703)
|+..|..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...+..+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 456788889999999999999999999987643 257788889999999999999999999999885 557789999999
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCc------ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH
Q 005305 275 MYSKCGSIEDAQGVFDEMSEKTT------VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348 (703)
Q Consensus 275 ~y~~~g~~~~A~~~f~~m~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 348 (703)
.|.+.|++++|...|++..+.++ ..|..+...+. ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 99999999999999999865433 23333311100 00122233344455555
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005305 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQML 425 (703)
Q Consensus 349 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 425 (703)
+.|...+..+.+... .+..++..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++..
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555432 245566666666777777777777776653 2345667777777777777777777777777
Q ss_pred HcCCCcCH-HHHH------------HHHHHHHccCCHHHHHHHHHHhHhhcCCCCch--HHHHHHHHHHHhcCChHHHHH
Q 005305 426 LNGMRPNH-VTFL------------AVLSACSRSGLSERGWEIFQSMSRDHKIKPRA--MHYACMIELLGREGLLDEAFA 490 (703)
Q Consensus 426 ~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~ 490 (703)
+. .|+. .++. .+...+.+.|++++|...++.+.+...-.+.. ..+..+...|.+.|++++|.+
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 64 3332 2221 23556788899999999998887732111111 235567788899999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 005305 491 LIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 491 ~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 547 (703)
.+++. ...| +..+|..+...+...|++++|...++++++++|++...+..+..++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99874 2234 677899999999999999999999999999999998888887777654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=172.45 Aligned_cols=353 Identities=14% Similarity=0.092 Sum_probs=164.9
Q ss_pred hCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHH
Q 005305 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256 (703)
Q Consensus 177 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 256 (703)
+.|++++|.+.+++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999997664 8999999999999999999999653 5778999999999999999999998888
Q ss_pred HHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHH
Q 005305 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336 (703)
Q Consensus 257 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 336 (703)
+.+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45688899999999999999999988864 67779999999999999999999999976 4789
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHH
Q 005305 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416 (703)
Q Consensus 337 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 416 (703)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999887 378999999999999999999988887764 444445568899999999999
Q ss_pred HHHHHHHHHHcCCCcCH-HHHH--HHHHHHHccCCHHHHHHHHHHhHhhcCCCC------chHHHHHHHHHHHhcCChHH
Q 005305 417 AVELFEQMLLNGMRPNH-VTFL--AVLSACSRSGLSERGWEIFQSMSRDHKIKP------RAMHYACMIELLGREGLLDE 487 (703)
Q Consensus 417 A~~l~~~m~~~g~~p~~-~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 487 (703)
|+.+++..... .+.. ..|+ .++.+-.+.+++.+..+.|..- -+++| +...|.-++-.|..-++++.
T Consensus 226 ai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 226 LITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 99999988753 3332 3444 4444444556777777766532 34555 46789999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC----------cchHHHHHHHHHhCCChHHHHHH
Q 005305 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK----------LSNYVVLLNIYNSSGKLKEAAEV 557 (703)
Q Consensus 488 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~y~~~g~~~~A~~~ 557 (703)
|...+-+-+ |+..--..+.....+-.+.|.--++..-.++..|.- .--..-.+.++.+.|.+.-+...
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~y 378 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPY 378 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHH
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHH
Confidence 988765543 121111222233334444443333332222222220 01123344555666666666666
Q ss_pred HHHHHhCC
Q 005305 558 IRTLRRKG 565 (703)
Q Consensus 558 ~~~m~~~~ 565 (703)
+..+...+
T Consensus 379 l~~v~~~n 386 (449)
T 1b89_A 379 LRSVQNHN 386 (449)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhh
Confidence 65555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-16 Score=160.82 Aligned_cols=287 Identities=12% Similarity=-0.002 Sum_probs=224.0
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 005305 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 339 (703)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+|+++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45566677777788888888888888887653 244566777788888888888888888887753 33556677777
Q ss_pred HHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHH
Q 005305 340 RICTRLA-SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGE 415 (703)
Q Consensus 340 ~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 415 (703)
..+...| +++.|...+..+++.. +.+..++..+...|...|++++|...|++... .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7788888 8888888888888764 23567788888889999999999999888742 34567777888899999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcC-------CCCchHHHHHHHHHHHhcCChHHH
Q 005305 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK-------IKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 416 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
+|+..|++..+.. ..+..++..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999988742 22457788888889999999999999988876321 134467888999999999999999
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH-HhCCChH
Q 005305 489 FALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY-NSSGKLK 552 (703)
Q Consensus 489 ~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~ 552 (703)
.+.+++. .. +.+...|..+...+...|++++|...++++++++|+++..+..++.+| ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999874 22 235678889999999999999999999999999999999999999988 4555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.4e-15 Score=161.75 Aligned_cols=421 Identities=10% Similarity=0.025 Sum_probs=270.0
Q ss_pred HHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC--C
Q 005305 117 FEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--R 194 (703)
Q Consensus 117 ~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~ 194 (703)
|++..+.. +-|...|..++.. ...|+++.|+.+++.+++.- +.+...|..++..+.+.|++++|+++|++... |
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Confidence 44454443 4466677777774 66788888888888887652 45566788888888888888888888887655 6
Q ss_pred CcccHHHHHHHH-HhCCChhHHHH----HHHHhHH-cCCCCC-hhhHHHHHHHHhc---------CCChHHHHHHHHHHH
Q 005305 195 NLVSCNMIIAGM-IDSGDYLEAFL----LFLDLWE-EFSDCG-SRTFATMIRASAG---------LELISVGKQLHSCAL 258 (703)
Q Consensus 195 d~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~a~~~---------~~~~~~a~~~~~~~~ 258 (703)
++..|...+... ...|+.++|.+ +|+.... .|..|+ ...|...+..... .|+++.+..++..++
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 666676666432 34566666554 5555443 244443 2334444433322 355566666666655
Q ss_pred HhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHH------HCC---CC
Q 005305 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR------DSG---VK 329 (703)
Q Consensus 259 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~g---~~ 329 (703)
+........+|..........|. ..+..++. .+.+++.+|..++.++. +.. ++
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 52111111222222221100110 01111111 02344566666665532 111 23
Q ss_pred CCH--------hhHHHHHHHHhc----cCCH----HHHHHHHHHHHHcCCCCchHHHHHHHhhHHh-------cCCHH--
Q 005305 330 MDH--------FTFSMIIRICTR----LASL----EHAKQAHAGLVRHGFGLDIVANSALVDFYSK-------WGRIE-- 384 (703)
Q Consensus 330 pd~--------~t~~~ll~a~~~----~~~~----~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k-------~g~~~-- 384 (703)
|+. ..|...+..... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 331 233333322211 1222 36677888888763 3467888888888875 68877
Q ss_pred -----HHHHHhhhcCc---C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHH
Q 005305 385 -----DARHVFDKMLC---K-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGW 453 (703)
Q Consensus 385 -----~A~~~f~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~ 453 (703)
+|..+|++... | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|+
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHH
Confidence 89999998753 3 577899999999999999999999999998 45653 47888888888899999999
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCC
Q 005305 454 EIFQSMSRDHKIKPRAMHYACMIEL-LGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGM 530 (703)
Q Consensus 454 ~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 530 (703)
.+|+...+. .+.+...|...+.+ +...|+.++|..+|++. ...| +...|..++......|+.++|+.++++++..
T Consensus 377 ~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 377 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999998762 12223333332222 33689999999999863 3334 5788999999999999999999999999988
Q ss_pred CCCCcc----hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 531 EPEKLS----NYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 531 ~p~~~~----~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
.|.++. .|...+......|+.+.+.++.+++.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 776555 7778888888999999999999888753
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-15 Score=160.12 Aligned_cols=364 Identities=10% Similarity=-0.012 Sum_probs=242.6
Q ss_pred cchHHHHHHHHHh----CCChHHHHHHHccCCC-CCcccHHHHHHHHHh----CCChhHHHHHHHHhHHcCCCCChhhHH
Q 005305 165 LYMRNRVLLMHVR----CGMMIDARRLFDEMPE-RNLVSCNMIIAGMID----SGDYLEAFLLFLDLWEEFSDCGSRTFA 235 (703)
Q Consensus 165 ~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 235 (703)
+.....|-..|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 115 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQ 115 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3344444444444 4555555555554322 244445555555555 556666666666555443 334444
Q ss_pred HHHHHHhc----CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----CCCHHHHHHHHhhcCC-CCcccHHHHHHH
Q 005305 236 TMIRASAG----LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK----CGSIEDAQGVFDEMSE-KTTVGWNTIIAG 306 (703)
Q Consensus 236 ~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~ 306 (703)
.+...+.. .+++++|...+..+.+.| ++..+..|..+|.. .++.++|.+.|++..+ .+..++..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444544 556666666666666654 44556666666665 6677777777766543 355566666666
Q ss_pred HHH----cCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHH
Q 005305 307 YAL----HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR----LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378 (703)
Q Consensus 307 ~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 378 (703)
|.. .++.++|++.|++..+.| +...+..+...+.. .++.++|...+....+.| +...+..|..+|.
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILE 266 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 766 677777777777777654 44455555555554 667788888887777654 4456666777777
Q ss_pred h----cCCHHHHHHHhhhcCc-CChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccC-
Q 005305 379 K----WGRIEDARHVFDKMLC-KNVISWNALIAGYGNH-----GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG- 447 (703)
Q Consensus 379 k----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g- 447 (703)
. .++.++|...|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+...|
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGS 343 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Confidence 7 7888888888887753 4566777777777776 88999999999888764 3455566666666656
Q ss_pred --CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCh
Q 005305 448 --LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR----EGLLDEAFALIRGAPFKTTKNMWAALLTACRV----NGNL 517 (703)
Q Consensus 448 --~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~ 517 (703)
+.++|.++|+...+ . .+...+..|..+|.. .+++++|.+.|++.....+...+..|...+.. .++.
T Consensus 344 ~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred cccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 78889999988877 2 456778888888887 78999999998875434467788888888887 7899
Q ss_pred hHHHHHHHHHhCCCCC---CcchHHHHHHHHHh
Q 005305 518 ELGKFAAEKLYGMEPE---KLSNYVVLLNIYNS 547 (703)
Q Consensus 518 ~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 547 (703)
++|...++++.+.+|+ ++.....|..++..
T Consensus 420 ~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 420 VQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999888743 56666666665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=165.38 Aligned_cols=221 Identities=12% Similarity=0.081 Sum_probs=83.1
Q ss_pred CCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHH
Q 005305 71 KPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149 (703)
Q Consensus 71 k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a 149 (703)
++|++++| ...+++++.+ .+|+.+.. +.+.|++++|++.|.+ .+|..+|..++.++...|++++|
T Consensus 15 ~~~~ld~A---~~fae~~~~~----~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRA---YEFAERCNEP----AVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHH---HHHHHhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHH
Confidence 67889999 9999999643 48999999 9999999999999964 25777999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCC
Q 005305 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229 (703)
Q Consensus 150 ~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 229 (703)
...++..++. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|.+++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 9988888774 56688899999999999999999988863 77789999999999999999999999876
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHH
Q 005305 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309 (703)
Q Consensus 230 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 309 (703)
..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQD 219 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHH
Confidence 36777888888888888877777765 367777888888888888888876666544 333334457777777
Q ss_pred cCCcHHHHHHHHHHHHC
Q 005305 310 HGYSEEALDLYYEMRDS 326 (703)
Q Consensus 310 ~g~~~~A~~l~~~m~~~ 326 (703)
.|++++|+.+|+.....
T Consensus 220 ~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 220 RGYFEELITMLEAALGL 236 (449)
T ss_dssp TTCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 77777777777776543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-15 Score=163.01 Aligned_cols=406 Identities=10% Similarity=0.058 Sum_probs=288.0
Q ss_pred CcccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 005305 94 SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173 (703)
Q Consensus 94 ~~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 173 (703)
|...|..++.+.+.|++++|..+|+++.+.. |.+...|...+..+.+.|+++.|+++++.+++.. |++..|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 6678988888667899999999999999863 6677789999999999999999999999999763 67777777775
Q ss_pred H-HHhCCChHHHHH----HHccCC------CCCcccHHHHHHHHHh---------CCChhHHHHHHHHhHHcCCCCCh--
Q 005305 174 M-HVRCGMMIDARR----LFDEMP------ERNLVSCNMIIAGMID---------SGDYLEAFLLFLDLWEEFSDCGS-- 231 (703)
Q Consensus 174 ~-y~~~g~~~~A~~----~f~~m~------~~d~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~-- 231 (703)
. ....|+.++|++ +|+... .++...|...+....+ .|++++|..+|++.... |+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 3 345677777665 666432 1356778888876655 68899999999998872 332
Q ss_pred -hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh-------cC------CCC-
Q 005305 232 -RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE-------MS------EKT- 296 (703)
Q Consensus 232 -~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-------m~------~~~- 296 (703)
..|..........+ ..+...++. .+.++++.|..++.+ +. .|+
T Consensus 165 ~~~~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 22222211100000 011111111 122345555554443 11 111
Q ss_pred -------cccHHHHHHHHHHc----CCc----HHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc-------cCCHH-----
Q 005305 297 -------TVGWNTIIAGYALH----GYS----EEALDLYYEMRDSGVKMDHFTFSMIIRICTR-------LASLE----- 349 (703)
Q Consensus 297 -------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-------~~~~~----- 349 (703)
...|...+.-...+ ++. ++|+.+|++..... +-+...|......+.. .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 23455555433222 222 37788898888752 3355666666666654 68876
Q ss_pred --HHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--cC-Ch-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 005305 350 --HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--CK-NV-ISWNALIAGYGNHGRGEEAVELFEQ 423 (703)
Q Consensus 350 --~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~-~~-~~~~~li~~~~~~g~~~~A~~l~~~ 423 (703)
.|..+++.+++.-.+.+..++..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|+.++|.++|++
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 899999999873234468899999999999999999999999884 33 33 4899999999999999999999999
Q ss_pred HHHcCCCcC-HHHHHHHHHH-HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC----CC
Q 005305 424 MLLNGMRPN-HVTFLAVLSA-CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA----PF 497 (703)
Q Consensus 424 m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 497 (703)
..+. .|+ ...+...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +.
T Consensus 382 Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 382 ARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 9875 333 2333322222 346899999999999988743 346788999999999999999999999874 22
Q ss_pred CCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 498 KTT--KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 498 ~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
.|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 332 458999999999999999999999999988885
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-15 Score=156.61 Aligned_cols=264 Identities=13% Similarity=0.013 Sum_probs=227.6
Q ss_pred CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 005305 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374 (703)
Q Consensus 295 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 374 (703)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|+++.|...+..+++... .+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 466778888899999999999999999998763 33555666778888999999999999999998753 3678899999
Q ss_pred hhHHhcC-CHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHH
Q 005305 375 DFYSKWG-RIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450 (703)
Q Consensus 375 ~~y~k~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 450 (703)
..|...| ++++|...|++... .+...|..+...|...|++++|+..|+++.+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998743 45678999999999999999999999999985322 3466777889999999999
Q ss_pred HHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHHcCChhH
Q 005305 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF-----------KTTKNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 451 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------~p~~~~~~~ll~a~~~~g~~~~ 519 (703)
+|...++.+.+ ..+.+...+..+...|.+.|++++|.+.+++... +.+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 3345678899999999999999999999876411 3345789999999999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 520 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-16 Score=161.76 Aligned_cols=280 Identities=11% Similarity=-0.040 Sum_probs=220.7
Q ss_pred HhCCCHHHHHH-HHhhcCC---C----CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH
Q 005305 277 SKCGSIEDAQG-VFDEMSE---K----TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348 (703)
Q Consensus 277 ~~~g~~~~A~~-~f~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 348 (703)
.-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888888 7775542 1 35568888889999999999999999998864 44667788888888999999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-ChhhHHH---------------HHHHHHh
Q 005305 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--K-NVISWNA---------------LIAGYGN 410 (703)
Q Consensus 349 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~~~~~~~---------------li~~~~~ 410 (703)
+.|...+..+++.. +.+..++..+...|.+.|++++|...|+++.. | +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999998875 33678888999999999999999999988743 2 2222221 1333448
Q ss_pred cCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 005305 411 HGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (703)
.|++++|+..|+++.+..... +..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999853221 4688889999999999999999999999873 3445788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC-----------cchHHHHHHHHHhCCChHHHHH
Q 005305 490 ALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-----------LSNYVVLLNIYNSSGKLKEAAE 556 (703)
Q Consensus 490 ~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~A~~ 556 (703)
+.++++ ...| +...|..+...+...|++++|...+++++++.|++ ...|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999874 2233 57789999999999999999999999999888877 7889999999999999999999
Q ss_pred HHHH
Q 005305 557 VIRT 560 (703)
Q Consensus 557 ~~~~ 560 (703)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-13 Score=150.45 Aligned_cols=352 Identities=14% Similarity=0.011 Sum_probs=295.3
Q ss_pred CCcccHHHHHHHHHh----CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCc
Q 005305 194 RNLVSCNMIIAGMID----SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG----LELISVGKQLHSCALKMGFGDN 265 (703)
Q Consensus 194 ~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~ 265 (703)
.|..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+..+.+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 467777778888888 899999999999998764 56677777778877 899999999999999876 6
Q ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHhhcCCC-CcccHHHHHHHHHH----cCCcHHHHHHHHHHHHCCCCCCHhhHH
Q 005305 266 VFVSCALIDMYSK----CGSIEDAQGVFDEMSEK-TTVGWNTIIAGYAL----HGYSEEALDLYYEMRDSGVKMDHFTFS 336 (703)
Q Consensus 266 ~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~ 336 (703)
+..+..|..+|.. .+++++|.+.|++..+. +..++..+...|.. .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777889999998 88999999999987654 56678888888887 789999999999998875 566777
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh----cCCHHHHHHHhhhcCc-CChhhHHHHHHH
Q 005305 337 MIIRICTR----LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK----WGRIEDARHVFDKMLC-KNVISWNALIAG 407 (703)
Q Consensus 337 ~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~~~~~~~~li~~ 407 (703)
.+-..+.. .++.++|...+....+.| +......|..+|.. .++.++|...|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 789999999999999875 56778888889986 8999999999998754 566778888888
Q ss_pred HHh----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc-----CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH
Q 005305 408 YGN----HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS-----GLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478 (703)
Q Consensus 408 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 478 (703)
|.. .++.++|+..|++..+.| +...+..+...+... ++.++|...|+...+ . .+...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q---GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHH
Confidence 887 899999999999998764 445666677777776 899999999999987 3 345677788888
Q ss_pred HHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh----
Q 005305 479 LGREG---LLDEAFALIRGAPFKTTKNMWAALLTACRV----NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS---- 547 (703)
Q Consensus 479 ~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---- 547 (703)
|.+.| +.++|.+.|++.....++..+..|...+.. .++.++|...++++.+.. ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88767 889999999885444678889999999988 899999999999998754 47889999999999
Q ss_pred CCChHHHHHHHHHHHhCCC
Q 005305 548 SGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 548 ~g~~~~A~~~~~~m~~~~~ 566 (703)
.+++++|.+.+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999987663
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-15 Score=160.23 Aligned_cols=279 Identities=15% Similarity=0.073 Sum_probs=136.2
Q ss_pred CCChHHHHH-HHccCCC-----C--CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHH
Q 005305 178 CGMMIDARR-LFDEMPE-----R--NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249 (703)
Q Consensus 178 ~g~~~~A~~-~f~~m~~-----~--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 249 (703)
.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+... .+..++..+...+...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 355566655 5553322 1 234455566666666666666666666554321 133344444444444444444
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCC
Q 005305 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329 (703)
Q Consensus 250 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 329 (703)
|...+..+++.. +. +..+|..+...|...|++++|+..|+++....
T Consensus 117 A~~~~~~al~~~-~~-------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 162 (368)
T 1fch_A 117 AISALRRCLELK-PD-------------------------------NQTALMALAVSFTNESLQRQACEILRDWLRYT-- 162 (368)
T ss_dssp HHHHHHHHHHHC-TT-------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHhcC-CC-------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 444444444433 22 33445555555555555555555555555432
Q ss_pred CCHh-hHHH---------------HHHHHhccCCHHHHHHHHHHHHHcCCCC-chHHHHHHHhhHHhcCCHHHHHHHhhh
Q 005305 330 MDHF-TFSM---------------IIRICTRLASLEHAKQAHAGLVRHGFGL-DIVANSALVDFYSKWGRIEDARHVFDK 392 (703)
Q Consensus 330 pd~~-t~~~---------------ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~ 392 (703)
|+.. .+.. .+..+...|+++.|...+..+++..... +..++..+...|.+.|++++|...|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111 1100 1222225555666666666655543221 345555666666666666666666665
Q ss_pred cC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCC--
Q 005305 393 ML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK-- 466 (703)
Q Consensus 393 m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-- 466 (703)
+. ..+..+|..+...|...|++++|+..|+++.+. .| +..++..+..++.+.|++++|...|+.+.+...-.
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 52 223455666666666666666666666666553 23 34555556666666666666666666554411000
Q ss_pred -------CchHHHHHHHHHHHhcCChHHHHHHHH
Q 005305 467 -------PRAMHYACMIELLGREGLLDEAFALIR 493 (703)
Q Consensus 467 -------p~~~~~~~li~~~~~~g~~~~A~~~~~ 493 (703)
.....|..+..+|.+.|+.++|..+++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 013455555555555566555555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-13 Score=157.84 Aligned_cols=258 Identities=10% Similarity=0.077 Sum_probs=109.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCcccHHHHHHHHHH
Q 005305 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE--KTTVGWNTIIAGYAL 309 (703)
Q Consensus 232 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~ 309 (703)
.+|..+..++...|++++|...|... .|...|..++..|.+.|++++|.+.|....+ ++....+.++.+|++
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence 34444444444444444444444221 2333444444444444444444444433221 122222234444444
Q ss_pred cCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHH
Q 005305 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389 (703)
Q Consensus 310 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 389 (703)
.+++++ ++-|- . .|+...+..+...|...|+++.|..+|..+ ..|..+...|.+.|++++|.+.
T Consensus 1180 l~rlee-le~fI---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1180 TNRLAE-LEEFI---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred hcCHHH-HHHHH---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 444442 22111 1 223333334444444444444444444442 2344444444444555555444
Q ss_pred hhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-c
Q 005305 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP-R 468 (703)
Q Consensus 390 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~ 468 (703)
+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.... +.| .
T Consensus 1244 arKA--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH 1313 (1630)
T 1xi4_A 1244 ARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAH 1313 (1630)
T ss_pred HHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhH
Confidence 4443 2334444444444444444444433322 111233333455555555555555555544432 111 2
Q ss_pred hHHHHHHHHHHHh--cCChHHHHHHHHh-CCCCC------CHHHHHHHHHHHHHcCChhHHH
Q 005305 469 AMHYACMIELLGR--EGLLDEAFALIRG-APFKT------TKNMWAALLTACRVNGNLELGK 521 (703)
Q Consensus 469 ~~~~~~li~~~~~--~g~~~~A~~~~~~-m~~~p------~~~~~~~ll~a~~~~g~~~~a~ 521 (703)
...|+-|..+|++ -+++.++.++|.+ +..+| +...|.-+...|.+.|+++.|.
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 2334344444442 2344444444433 22221 2345555555666666666555
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-13 Score=155.11 Aligned_cols=380 Identities=12% Similarity=0.114 Sum_probs=283.2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhC--CCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhC
Q 005305 132 TYDALISACIGLRSIREVKRVFSYMLSTG--FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209 (703)
Q Consensus 132 t~~~ll~~~~~~~~~~~a~~l~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 209 (703)
--+..++++...|.+.++.++++.++-.+ +..+....+.|+.+..+. +..+.....+....-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 34566777788888888888888887332 113345666677666665 4455555444443222 44477778889
Q ss_pred CChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 005305 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289 (703)
Q Consensus 210 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 289 (703)
|.+++|..+|++.. . .......++. ..+++++|.++...+ .++.+|..+..++.+.|++++|.+.|
T Consensus 1063 glyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999998752 1 1222233332 567788888877644 45778889999999999999999999
Q ss_pred hhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHH
Q 005305 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369 (703)
Q Consensus 290 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 369 (703)
.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.+..+|++.++++....+ ++ .++...
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad 1197 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAH 1197 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHH
Confidence 764 567788889999999999999999998777653 3433344588888998888754433 22 345566
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 449 (703)
+..+.+.|...|++++|...|... ..|..+...|.+.|++++|.+.+++. -+..+|..+-.+|...|++
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHH
Confidence 667999999999999999999985 48999999999999999999999876 3568899999999999999
Q ss_pred HHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHc--CChhHHHHHHH
Q 005305 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKT-TKNMWAALLTACRVN--GNLELGKFAAE 525 (703)
Q Consensus 450 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~--g~~~~a~~~~~ 525 (703)
..|...... +..+++.+..++..|.+.|.+++|+++++. ++.+| ....|.-|..++.+. ++..++.+.+.
T Consensus 1267 ~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 988876543 334667788999999999999999999976 34444 344676666666544 56677777787
Q ss_pred HHhCCCC-----CCcchHHHHHHHHHhCCChHHHHHH
Q 005305 526 KLYGMEP-----EKLSNYVVLLNIYNSSGKLKEAAEV 557 (703)
Q Consensus 526 ~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~A~~~ 557 (703)
.-..+.| ++...|.-++-+|.+.|.|+.|...
T Consensus 1341 ~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1341 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 7777766 6678899999999999999999854
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=158.85 Aligned_cols=261 Identities=10% Similarity=-0.086 Sum_probs=212.8
Q ss_pred CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHh
Q 005305 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375 (703)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 375 (703)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568899999999999999999999998764 4467788888999999999999999999998875 336788999999
Q ss_pred hHHhcCCHHHHHHHhhhcCcC---Chh----------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHH
Q 005305 376 FYSKWGRIEDARHVFDKMLCK---NVI----------SWNALIAGYGNHGRGEEAVELFEQMLLNGMR-PNHVTFLAVLS 441 (703)
Q Consensus 376 ~y~k~g~~~~A~~~f~~m~~~---~~~----------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 441 (703)
.|.+.|++++|...|+++... +.. .++.+...|...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999988432 122 2334578889999999999999999985322 15788899999
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 519 (703)
.+...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999873 3456789999999999999999999999874 3344 57789999999999999999
Q ss_pred HHHHHHHHhCCCCC------------CcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 520 GKFAAEKLYGMEPE------------KLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 520 a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
|...+++++++.|+ +...|..|..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999988776 357799999999999999999887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-14 Score=155.01 Aligned_cols=368 Identities=13% Similarity=-0.017 Sum_probs=180.9
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHccCC-----------C-CCcccHHHHHHHHHhCCChhHHHHHHHHhHHc-----C-
Q 005305 165 LYMRNRVLLMHVRCGMMIDARRLFDEMP-----------E-RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE-----F- 226 (703)
Q Consensus 165 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~-----------~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 226 (703)
...||.|...|...|+.++|++.|++.. . ...++|+.+...|...|++++|+..|++.... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4456666666666676666666665421 1 12345556666666666666666665554321 0
Q ss_pred CCC-ChhhHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHH
Q 005305 227 SDC-GSRTFATMIRASAG--LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303 (703)
Q Consensus 227 ~~p-~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 303 (703)
..+ ...++.....++.. .+++++|...|..+++.. |.++..+..+..++.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~------------------------- 184 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYR------------------------- 184 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH-------------------------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-------------------------
Confidence 001 11222222222221 223444444444444432 2222233222222111
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh
Q 005305 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR----LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379 (703)
Q Consensus 304 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 379 (703)
+...++.++|++.|++..+.. +.+...+..+...+.. .++.+.|.+.++.+.+... .+..++..+...|.+
T Consensus 185 ---l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 185 ---LDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRR 259 (472)
T ss_dssp ---HHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHH
T ss_pred ---hcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHH
Confidence 223344455555555544431 1122333333222222 2344455555555554432 234455555555555
Q ss_pred cCCHHHHHHHhhhcCc---CChhhHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHcCCCcC-HHHH
Q 005305 380 WGRIEDARHVFDKMLC---KNVISWNALIAGYGN-------------------HGRGEEAVELFEQMLLNGMRPN-HVTF 436 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~-~~t~ 436 (703)
.|++++|...|++..+ .+..+|..+...|.. .+..++|+..|++..+. .|+ ..++
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 337 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVC 337 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhh
Confidence 5555555555555421 223334433333321 22356788888887764 343 3667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCch--HHHHHHHHH-HHhcCChHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA--MHYACMIEL-LGREGLLDEAFALIRG-APFKTTKNMWAALLTACR 512 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~-~~~~g~~~~A~~~~~~-m~~~p~~~~~~~ll~a~~ 512 (703)
..+...+...|++++|...|+...+ ....|.. ..+..+... +...|+.++|++.|++ +.+.|+...+...
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----- 411 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----- 411 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH-----
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-----
Confidence 7788888999999999999998876 2222221 122333332 3467899999998876 3455665443322
Q ss_pred HcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEE
Q 005305 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575 (703)
Q Consensus 513 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 575 (703)
.+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-..+...+|+
T Consensus 412 ----~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 ----KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ----HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 23455677788888999999999999999999999999999999988776555555664
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-14 Score=142.94 Aligned_cols=268 Identities=9% Similarity=-0.022 Sum_probs=211.2
Q ss_pred HHhCCCHHHHHHHHhhcCCCCc----ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHH
Q 005305 276 YSKCGSIEDAQGVFDEMSEKTT----VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351 (703)
Q Consensus 276 y~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 351 (703)
....|++..|+..++.....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3457888888888887665432 2345567888899999998887654 2356677788888888888899999
Q ss_pred HHHHHHHHHcCCCC-chHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005305 352 KQAHAGLVRHGFGL-DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430 (703)
Q Consensus 352 ~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 430 (703)
.+.++.++..+..| +..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 99999888876433 567778888999999999999999998 567889999999999999999999999999986 4
Q ss_pred cCHHHH---HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 005305 431 PNHVTF---LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWA 505 (703)
Q Consensus 431 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 505 (703)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+...+.+.|++++|.+.+++. ...| +..+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 664311 12234444568999999999999884 5667889999999999999999999999883 3345 677899
Q ss_pred HHHHHHHHcCChhH-HHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHH
Q 005305 506 ALLTACRVNGNLEL-GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557 (703)
Q Consensus 506 ~ll~a~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 557 (703)
.++..+...|+.++ +...++++++++|+++.+ .+...+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 99999999999876 578899999999998643 4566666666666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=178.12 Aligned_cols=132 Identities=16% Similarity=0.157 Sum_probs=113.1
Q ss_pred CCCchHHHHHHHhhHHhcCCHHHHHHHhhhc-------CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHH
Q 005305 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKM-------LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435 (703)
Q Consensus 363 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m-------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 435 (703)
...-..+||+||++|+++|++++|.++|++| ..||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3445678999999999999999999999776 358999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 436 FLAVLSACSRSGL-SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 436 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
|+++|.++++.|. .++|.++|++|.+ .|+.||..+|++++....|.+-++...++..++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999887 4788999999988 699999999999998888876666665554433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-14 Score=148.75 Aligned_cols=259 Identities=9% Similarity=-0.108 Sum_probs=187.5
Q ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhH
Q 005305 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377 (703)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 377 (703)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+++.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555566666666666666666665542 2244555555566666666666666666666653 22455666666677
Q ss_pred HhcCCHHHHHHHhhhcCc---CChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005305 378 SKWGRIEDARHVFDKMLC---KNVISWNAL--------------IA-GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439 (703)
Q Consensus 378 ~k~g~~~~A~~~f~~m~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 439 (703)
.+.|++++|.+.|+++.. .+...+..+ .. .+...|++++|+..++++.+.. ..+..++..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777766532 122233222 22 3667788999999999988753 2256788888
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNL 517 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~ 517 (703)
...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 88999999999999999998773 3445778889999999999999999999874 2233 577899999999999999
Q ss_pred hHHHHHHHHHhCCCCC------------CcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 518 ELGKFAAEKLYGMEPE------------KLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 518 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
++|...++++++..|+ ++..|..++.+|.+.|++++|.+++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999998888 6889999999999999999999988643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.2e-15 Score=153.01 Aligned_cols=271 Identities=9% Similarity=-0.096 Sum_probs=166.0
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li 172 (703)
+...|..+.. +.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 5667888888 999999999999999998875 5678889999999999999999999999998875 45567788888
Q ss_pred HHHHhCCChHHHHHHHccCCC--C-Ccc----------cHHHHHHHHHhCCChhHHHHHHHHhHHcCCC-CChhhHHHHH
Q 005305 173 LMHVRCGMMIDARRLFDEMPE--R-NLV----------SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD-CGSRTFATMI 238 (703)
Q Consensus 173 ~~y~~~g~~~~A~~~f~~m~~--~-d~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll 238 (703)
..|.+.|++++|+..|+++.+ | +.. .++.+...+...|++++|+..|+++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888877653 1 111 2223355666666666666666666554322 1344555555
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHH
Q 005305 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEE 315 (703)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 315 (703)
..+...|++++|...+..+++.. +.+..+++.+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 55555556666665555555543 33455555555555555555555555554432 233445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhh
Q 005305 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392 (703)
Q Consensus 316 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 392 (703)
|...|+++.+. .|+...-.. ......+..++..|...+...|+.+.|..+..+
T Consensus 300 A~~~~~~al~~--~~~~~~~~~----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSL--QRKSRNQQQ----------------------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHH--HHCC----------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CcccCCCcc----------------------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 55555554432 111000000 000011356777788888888888888777665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-16 Score=173.32 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=135.7
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC-------CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHh
Q 005305 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-------EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333 (703)
Q Consensus 261 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 333 (703)
....-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 344556799999999999999999999997764 5799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-----CChhhHHHHHHH
Q 005305 334 TFSMIIRICTRLAS-LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-----KNVISWNALIAG 407 (703)
Q Consensus 334 t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~~~~~~~li~~ 407 (703)
||+++|.++++.|. .+.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.. +.+.+-+.|...
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999999997 578999999999999999999999999998888777777777666632 123344455666
Q ss_pred HHhcCC---------HHHHHHHHHH
Q 005305 408 YGNHGR---------GEEAVELFEQ 423 (703)
Q Consensus 408 ~~~~g~---------~~~A~~l~~~ 423 (703)
|.+.+. .++-.++|++
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHH
Confidence 666552 3555555654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.1e-14 Score=142.21 Aligned_cols=246 Identities=9% Similarity=0.052 Sum_probs=200.0
Q ss_pred HHHHHcCCcHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCC
Q 005305 305 AGYALHGYSEEALDLYYEMRDSGVKMDH--FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382 (703)
Q Consensus 305 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 382 (703)
.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+......+...|...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 345568999999999877543 34443 3456677899999999999875543 245677888899999999999
Q ss_pred HHHHHHHhhhcC----cC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 005305 383 IEDARHVFDKML----CK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457 (703)
Q Consensus 383 ~~~A~~~f~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 457 (703)
.++|.+.++++. .| +...+..+...|.+.|++++|++.|++ ..+...+..+...+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999873 24 456677778899999999999999987 3566788888999999999999999999
Q ss_pred HhHhhcCCCCchHH---HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCC
Q 005305 458 SMSRDHKIKPRAMH---YACMIELLGREGLLDEAFALIRGAP--FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532 (703)
Q Consensus 458 ~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 532 (703)
.+.+. .|+... ..+++..+...|++++|..+|+++. .+++...|+.+..++...|++++|+..++++++.+|
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99873 355321 2234455556699999999998862 245788999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCChHH-HHHHHHHHHhCC
Q 005305 533 EKLSNYVVLLNIYNSSGKLKE-AAEVIRTLRRKG 565 (703)
Q Consensus 533 ~~~~~~~~l~~~y~~~g~~~~-A~~~~~~m~~~~ 565 (703)
+++.++..++.++...|++++ +.++++++.+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987 578988887543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8.2e-14 Score=142.83 Aligned_cols=274 Identities=11% Similarity=0.004 Sum_probs=170.9
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 005305 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274 (703)
Q Consensus 195 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 274 (703)
+...|..+...+...|++++|+.+|+++.+.... +..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 3455666777777777777777777777654322 44555556666666666666666666666653 344555666666
Q ss_pred HHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH--HHhccCCHH
Q 005305 275 MYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR--ICTRLASLE 349 (703)
Q Consensus 275 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~--a~~~~~~~~ 349 (703)
.|...|++++|.+.|+++... +...+..+... .|+......+.. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 666666666666666554321 11122221000 001111111102 255566677
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 350 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.|...+..+++... .+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+
T Consensus 156 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777766542 256677777777777888888887777763 23466777888888888888888888888777
Q ss_pred cCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-----------chHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP-----------RAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 427 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
.. ..+..++..+...+...|++++|.+.|+.+.+.. -.. +...|..+..+|.+.|+.++|.+++++.
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 42 2245677777788888888888888888776621 110 4677888888888888888888887653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-13 Score=143.49 Aligned_cols=381 Identities=11% Similarity=-0.025 Sum_probs=235.5
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHh-----C--CCC-CcchHHHHHHHHHhCCChHHHHHHHccCCC------
Q 005305 128 VGSSTYDALISACIGLRSIREVKRVFSYMLST-----G--FEP-DLYMRNRVLLMHVRCGMMIDARRLFDEMPE------ 193 (703)
Q Consensus 128 p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~-----g--~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~------ 193 (703)
.....|+.+-..+...|+.++|.+.++..++. + ..| ...+|+.+...|...|++++|...|++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999988753 1 122 345788899999999999999988876532
Q ss_pred -----CCcccHHHHHHHHHhC--CChhHHHHHHHHhHHcCCCCC-hhhHHHHHHH---HhcCCChHHHHHHHHHHHHhCC
Q 005305 194 -----RNLVSCNMIIAGMIDS--GDYLEAFLLFLDLWEEFSDCG-SRTFATMIRA---SAGLELISVGKQLHSCALKMGF 262 (703)
Q Consensus 194 -----~d~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a---~~~~~~~~~a~~~~~~~~~~g~ 262 (703)
....+++.+..++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|.+.+..+++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1234565555555554 5789999999998875 344 3344444333 455678888999999988876
Q ss_pred CCcHHHHHHHHHHHHh----CCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCC-Hhh
Q 005305 263 GDNVFVSCALIDMYSK----CGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD-HFT 334 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t 334 (703)
+.+..++..+...+.. .|++++|.+.|++... .+...|..+...|...|++++|+..|++..+. .|+ ..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHH
Confidence 5566667666655554 4677889999887643 45667888999999999999999999998875 344 344
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhc
Q 005305 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNH 411 (703)
Q Consensus 335 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~ 411 (703)
+..+...+...+. . .... ............+..+.|...|+... ..+..+|..+...|...
T Consensus 284 ~~~lg~~y~~~~~-----~----~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 284 HCQIGCCYRAKVF-----Q----VMNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHH-----H----HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-----H----hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 4444433321110 0 0000 00111111222334567777777663 34567899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHH--HHHHHHH-HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHH
Q 005305 412 GRGEEAVELFEQMLLNGMRPNHV--TFLAVLS-ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 412 g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
|++++|+..|++..+....|... .+..+.. ...+.|+.++|...|....+ +.|+........ +.+
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l 415 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKL 415 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHH
Confidence 99999999999998854443321 2222222 34578999999999998876 455543322222 223
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 489 FALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 489 ~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
.+++++. .. +.+..+|..|...+...|++++|...+++++++.|.+|.++.-+
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 3333321 12 23567899999999999999999999999999999887765544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=7e-13 Score=130.69 Aligned_cols=216 Identities=10% Similarity=-0.003 Sum_probs=153.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-C-------hhhHHHHH
Q 005305 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--K-N-------VISWNALI 405 (703)
Q Consensus 336 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~-------~~~~~~li 405 (703)
..+...+...|+++.|...+..+++.. .+..++..+...|...|++++|...|++... | + ...|..+.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 333344444444445544444444443 3445555555556666666666666555422 1 1 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCCh
Q 005305 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485 (703)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 485 (703)
..|...|++++|+..|++..+. .|+. ..+...|++++|...++.+.+ ..+.+...+..+...+.+.|++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 7888888888888888888774 4453 235556778888888888766 2233456777888888888999
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 486 DEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 486 ~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
++|.+.+++. .. +.+...|..+...+...|++++|...++++++..|+++..|..++.+|.+.|++++|.+.+++..+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9998888774 22 335778888889999999999999999999999999999999999999999999999999988775
Q ss_pred C
Q 005305 564 K 564 (703)
Q Consensus 564 ~ 564 (703)
.
T Consensus 236 ~ 236 (258)
T 3uq3_A 236 K 236 (258)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=8e-13 Score=130.28 Aligned_cols=233 Identities=12% Similarity=-0.013 Sum_probs=149.4
Q ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--Cc----hHHHHH
Q 005305 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG--LD----IVANSA 372 (703)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~~~~ 372 (703)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|+++.|...+..+++.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555544 44555555555555556666666555555543211 11 456666
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSER 451 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 451 (703)
+...|.+.|++++|...|++....+.. ...+...|++++|+..++++... .|+. ..+..+...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHH
Confidence 777777777777777777766431111 23455567777888888777763 4443 566667777778888888
Q ss_pred HHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhC
Q 005305 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYG 529 (703)
Q Consensus 452 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 529 (703)
|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+.++|...++++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888877762 2345667777888888888888888887763 2233 466778888888888888888888888887
Q ss_pred CC------CCCcchHHHHH
Q 005305 530 ME------PEKLSNYVVLL 542 (703)
Q Consensus 530 ~~------p~~~~~~~~l~ 542 (703)
+. |++...+..+.
T Consensus 236 ~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHHH
Confidence 77 76655555444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-12 Score=128.86 Aligned_cols=241 Identities=10% Similarity=-0.056 Sum_probs=185.1
Q ss_pred HcCCcHHHHHHHHHHHHCCCC---CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHH
Q 005305 309 LHGYSEEALDLYYEMRDSGVK---MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385 (703)
Q Consensus 309 ~~g~~~~A~~l~~~m~~~g~~---pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 385 (703)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+++... .+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 356788888888888775321 1345667777778888888888888888887643 367788889999999999999
Q ss_pred HHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhh
Q 005305 386 ARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462 (703)
Q Consensus 386 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 462 (703)
|...|++... .+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988743 46778999999999999999999999999884 566555555556667779999999999887763
Q ss_pred cCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTT-----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 463 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 4777788888889999999874 33332 468889999999999999999999999999998654
Q ss_pred hHHHHHHHHHhCCChHHHHHHH
Q 005305 537 NYVVLLNIYNSSGKLKEAAEVI 558 (703)
Q Consensus 537 ~~~~l~~~y~~~g~~~~A~~~~ 558 (703)
. ...++...|++++|.+-+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 4 466788889999988765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=126.30 Aligned_cols=194 Identities=18% Similarity=0.081 Sum_probs=150.5
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHH
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAV 439 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 439 (703)
+++...+..+...|.+.|++++|...|++... .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 34566777888888888999999988888743 35678888888899999999999999998874 454 4677778
Q ss_pred HHHHHcc-----------CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 005305 440 LSACSRS-----------GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTKNMWAAL 507 (703)
Q Consensus 440 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 507 (703)
..++... |++++|...|+...+. -+.+...+..+..+|...|++++|++.|++. ....+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999998872 2335678888999999999999999999873 112678899999
Q ss_pred HHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 508 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
..++...|++++|...++++++++|+++..+..++.+|.+.|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-11 Score=133.71 Aligned_cols=372 Identities=9% Similarity=0.007 Sum_probs=179.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCCh---HHHHHHHccCCCCCcccHHHHHHHHHhCC--
Q 005305 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM---IDARRLFDEMPERNLVSCNMIIAGMIDSG-- 210 (703)
Q Consensus 136 ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~m~~~d~~~~~~li~~~~~~g-- 210 (703)
+...+.+.|++++|.+++....+.| ++..+..|-.+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3444556677777777777777765 233344455556666666 77888887776666667777766555554
Q ss_pred ---ChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC----
Q 005305 211 ---DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI---SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG---- 280 (703)
Q Consensus 211 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g---- 280 (703)
++++|+..|++..+.|... .+..+...+...+.. ..+.+.+......| ++.....|..+|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 6678888888877755332 444444444443332 23444444444444 3445566677777666
Q ss_pred CHHHHHHHHhhcCCCCcccHHHHHHHHHHcC---CcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc----CCHHHHHH
Q 005305 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHG---YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL----ASLEHAKQ 353 (703)
Q Consensus 281 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~----~~~~~a~~ 353 (703)
..+.+..++......++.++..+...|...| +.++|++.|++..+.| .++...+..+-..+... ++.++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4455566666666666667777777777777 7777777777777765 23333323333333332 34555555
Q ss_pred HHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCc
Q 005305 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY--GNHGRGEEAVELFEQMLLNGMRP 431 (703)
Q Consensus 354 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p 431 (703)
.+..+. . .++..+..|..+| | ...+++++|+..|++..+.|
T Consensus 239 ~~~~aa-~---g~~~a~~~Lg~~~------------------------------~~~~~~~d~~~A~~~~~~Aa~~g--- 281 (452)
T 3e4b_A 239 LLEKIA-P---GYPASWVSLAQLL------------------------------YDFPELGDVEQMMKYLDNGRAAD--- 281 (452)
T ss_dssp HHHHHG-G---GSTHHHHHHHHHH------------------------------HHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHc-C---CCHHHHHHHHHHH------------------------------HhCCCCCCHHHHHHHHHHHHHCC---
Confidence 555444 2 1333333343331 2 23445555555555555443
Q ss_pred CHHHHHHHHHHHHccC-----CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHH
Q 005305 432 NHVTFLAVLSACSRSG-----LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR----EGLLDEAFALIRGAPFKTTKN 502 (703)
Q Consensus 432 ~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~ 502 (703)
+...+..+...|. .| +.++|..+|+... .-+...+..|..+|.. ..+.++|.+.|++.....+..
T Consensus 282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~ 355 (452)
T 3e4b_A 282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS 355 (452)
T ss_dssp CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT
T ss_pred CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH
Confidence 3333333333333 22 5555555555443 2334444445544443 225566666665532222333
Q ss_pred HHHHHHHHHHH----cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH--hCCChHHHHHHHHHHH
Q 005305 503 MWAALLTACRV----NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN--SSGKLKEAAEVIRTLR 562 (703)
Q Consensus 503 ~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~--~~g~~~~A~~~~~~m~ 562 (703)
....|...|.. ..+.++|...++++.+..+.+ .-..+..+.. ..++.++|.++.++-+
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33334444332 345666666666666555432 2223333322 2234556666655543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.8e-12 Score=125.46 Aligned_cols=253 Identities=12% Similarity=0.029 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCC--HhhHHHHHHHH
Q 005305 268 VSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD--HFTFSMIIRIC 342 (703)
Q Consensus 268 ~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~ 342 (703)
........|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+....|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344566677777888888887777643 2445677777777778888888888777776321111 12255666666
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHH
Q 005305 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVE 419 (703)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 419 (703)
...|+++.|...+..+++... .+..++..+...|.+.|++++|...|++... .+...|..+...+-..+++++|+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777776666532 2445666666666666666666666666542 233444444412222346666666
Q ss_pred HHHHHHHcCCCcC-HHHHHHHHHHHHccCC---HHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 420 LFEQMLLNGMRPN-HVTFLAVLSACSRSGL---SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 420 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
.|+++.+. .|+ ...+..+..++...|+ .++|...++.+.+...-.|+.. -
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~----------------------- 217 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K----------------------- 217 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-----------------------
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-----------------------
Confidence 66665553 333 2333334444444443 3344444443333111111100 0
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 005305 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549 (703)
Q Consensus 496 ~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 549 (703)
.....+|..+...+...|++++|...++++++++|+++.++..+..+....+
T Consensus 218 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 218 --DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0012356667777888888888888888888888988877766665554443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.5e-12 Score=121.94 Aligned_cols=193 Identities=12% Similarity=-0.058 Sum_probs=134.4
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li 172 (703)
+...|..+.. +.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 6667777777 999999999999999998765 5677888888889999999999999999998875 44567788888
Q ss_pred HHHHhC-----------CChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHH
Q 005305 173 LMHVRC-----------GMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238 (703)
Q Consensus 173 ~~y~~~-----------g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 238 (703)
..|.+. |++++|+..|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 888887 777777777766543 345566667777777777777777777776655 4666666666
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 005305 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292 (703)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 292 (703)
.++...|++++|...++.+++.. +.+..++..+...|.+.|++++|.+.|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777777776654 445666666667777777777776666654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-11 Score=119.36 Aligned_cols=197 Identities=12% Similarity=-0.006 Sum_probs=161.1
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 443 (703)
..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. ..+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4667777888888888888888888774 3456778888888899999999999999888753 22557777888888
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 005305 444 SRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELG 520 (703)
Q Consensus 444 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 520 (703)
...|++++|..+++.+.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999988876 33444 4667788888899999999999988874 2233 577888888999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...++++++..|++...+..++.+|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999988899999999999999999999999987644
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-11 Score=115.72 Aligned_cols=197 Identities=14% Similarity=0.050 Sum_probs=143.0
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 442 (703)
+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. ..+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566667777777777777777777663 2345677777777778888888888888777642 2245667777777
Q ss_pred HHcc-CCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 005305 443 CSRS-GLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLE 518 (703)
Q Consensus 443 ~~~~-g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~ 518 (703)
+... |++++|..+++.+.+ .+..| +...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7788 888888888877766 33333 3566777777788888888888877763 2223 4667777888888888888
Q ss_pred HHHHHHHHHhCCCC-CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 519 LGKFAAEKLYGMEP-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 519 ~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+|...++++++..| +++..+..+..++...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 77777888888888888888888888877643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-09 Score=120.76 Aligned_cols=422 Identities=9% Similarity=0.022 Sum_probs=246.8
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC---hHHHHHHHHHHHHhC-CCCCcchH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRS---IREVKRVFSYMLSTG-FEPDLYMR 168 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~---~~~a~~l~~~~~~~g-~~~~~~~~ 168 (703)
|...|..++. +.+.+..+.+..+|+.+... ++.....|..-+..-.+.++ .+.+.++|+..+... .+|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 5566777777 66667777777777777765 35555666666666666666 777777777776643 13566666
Q ss_pred HHHHHHHHhCCCh--------HHHHHHHccCC------CC-CcccHHHHHHHHHh---------CCChhHHHHHHHHhHH
Q 005305 169 NRVLLMHVRCGMM--------IDARRLFDEMP------ER-NLVSCNMIIAGMID---------SGDYLEAFLLFLDLWE 224 (703)
Q Consensus 169 ~~Li~~y~~~g~~--------~~A~~~f~~m~------~~-d~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 224 (703)
..-+....+.++. +..+++|+... ++ +...|...+.-... +++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 6666555444433 22335555311 12 23456665554322 2334556666666553
Q ss_pred cCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh-------cCC---
Q 005305 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE-------MSE--- 294 (703)
Q Consensus 225 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-------m~~--- 294 (703)
.....-..+|.....-....+ ...+.+++.+. ..+++.|...+.+ +..
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 211101112211111000000 00111111110 0122233333322 110
Q ss_pred -----------C--C------cccHHHHHHHHHHcCC-------cHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH
Q 005305 295 -----------K--T------TVGWNTIIAGYALHGY-------SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348 (703)
Q Consensus 295 -----------~--~------~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 348 (703)
| + ...|...+.---.++. .+.+..+|++.... .+-+...|.....-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 0 1234444443222221 23345677777664 234566666666667777888
Q ss_pred HHHH-HHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-------------CC------------hhhHH
Q 005305 349 EHAK-QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-------------KN------------VISWN 402 (703)
Q Consensus 349 ~~a~-~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------------~~------------~~~~~ 402 (703)
+.|. .+++.++.. .+.+...+-.++..+-+.|+++.|.++|+.+.. |+ ...|-
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8886 999988875 345677788888888899999999999988743 21 23577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHcc-CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 005305 403 ALIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACSRS-GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480 (703)
Q Consensus 403 ~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 480 (703)
..+....+.|..+.|..+|.+.++. +. +....|......-.+. ++.+.|+.+|+...+. .+.+...+...++...
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 7787777888899999999998875 21 1223333222222233 4589999999988874 3445666778888888
Q ss_pred hcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 481 REGLLDEAFALIRGA-PFKT----TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 481 ~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
..|+.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|++. ....+++=|
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 889999999999874 2233 245888888888899999999999999998888864 344444444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-10 Score=115.59 Aligned_cols=224 Identities=11% Similarity=-0.070 Sum_probs=128.3
Q ss_pred CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHH
Q 005305 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR----LASLEHAKQAHAGLVRHGFGLDIVANS 371 (703)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 371 (703)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 34445555555666666666666666655521 22333334444444 444555554444444432
Q ss_pred HHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc--
Q 005305 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN----HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR-- 445 (703)
Q Consensus 372 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-- 445 (703)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34444445555555 555555665555555543 44455555555555
Q ss_pred --cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 005305 446 --SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR----EGLLDEAFALIRGAPFKTTKNMWAALLTACRV----NG 515 (703)
Q Consensus 446 --~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g 515 (703)
.++.++|..+|+...+ .+ +...+..+...|.+ .+++++|.+.+++.....+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 5666666666665554 22 34445555555555 66666666666553222345556666666666 67
Q ss_pred ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCC
Q 005305 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS----SGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~ 565 (703)
+.++|...++++.+..| +..+..|+.+|.. .|++++|.+.+++..+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777777776655 4667777777777 778888888877776654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-11 Score=120.55 Aligned_cols=214 Identities=14% Similarity=-0.003 Sum_probs=142.4
Q ss_pred hCCChhHHHHHHHHhHHcCCCC---ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHH
Q 005305 208 DSGDYLEAFLLFLDLWEEFSDC---GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284 (703)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 284 (703)
..|++++|+..|+++.+..... +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 3466778888888777653211 24456667777777788888888887777765 4567778888888888888888
Q ss_pred HHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005305 285 AQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361 (703)
Q Consensus 285 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 361 (703)
|.+.|++..+ .+...|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|+++.|...+..+...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877653 35667888888888888888888888888774 344444444444556667777777777666664
Q ss_pred CCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN-------VISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 362 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.. ++...+ .++..+...++.++|...++.....+ ...|..+...|...|++++|+..|++..+
T Consensus 174 ~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 174 SD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp SC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 32 222222 35555666666667776666654322 34556666666666666666666666655
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-11 Score=128.55 Aligned_cols=267 Identities=9% Similarity=-0.008 Sum_probs=174.1
Q ss_pred CHHHHHHHHhhcCCC-CcccHHHHHHHHHHcCCcH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH----HHHH
Q 005305 281 SIEDAQGVFDEMSEK-TTVGWNTIIAGYALHGYSE---EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL----EHAK 352 (703)
Q Consensus 281 ~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~----~~a~ 352 (703)
+.++|.+.|++..++ +...+..|...|...+..+ ++++.+.+....|. ......+...+...+.+ +.+.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 445555555544332 3335555555555444322 23444444443332 22333344444444433 3333
Q ss_pred HHHHHHHHcCCCCchHHHHHHHhhHHhcC---CHHHHHHHhhhcCc---CChhhHHHHHHHHHhc----CCHHHHHHHHH
Q 005305 353 QAHAGLVRHGFGLDIVANSALVDFYSKWG---RIEDARHVFDKMLC---KNVISWNALIAGYGNH----GRGEEAVELFE 422 (703)
Q Consensus 353 ~~~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~l~~ 422 (703)
.++..+.+ .++..+..|..+|.+.| +.++|.+.|+.... ++...+..+...|... +++++|+..|+
T Consensus 166 ~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 166 RICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 33333322 23337777778888888 78888888877643 2333335566666444 68999999999
Q ss_pred HHHHcCCCcCHHHHHHHHHH-H--HccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcC-----ChHHHHHHHHh
Q 005305 423 QMLLNGMRPNHVTFLAVLSA-C--SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG-----LLDEAFALIRG 494 (703)
Q Consensus 423 ~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~ 494 (703)
+.. .| +...+..+... + ...++.++|..+|+...+ .| +...+..|..+|. .| ++++|.+.|++
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 986 33 33444455544 3 468999999999999887 34 5667778888887 55 99999999999
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 005305 495 APFKTTKNMWAALLTACRV----NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS----SGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 495 m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~~ 566 (703)
.. ..++..+..|...|.. ..+.++|...+++..+. .++.....|+.+|.. ..+.++|..+++...+.|.
T Consensus 313 Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 313 AV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred Hh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 87 6677788887777765 34999999999999874 456788999999985 4589999999999887764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-11 Score=125.40 Aligned_cols=244 Identities=11% Similarity=0.033 Sum_probs=186.1
Q ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 005305 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS-LEHAKQAHAGLVRHGFGLDIVANSALVDF 376 (703)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 376 (703)
..|+.+...+.+.|++++|+..|++..+.. +-+...|..+..++...|+ +++|...++.+++.... +..+|+.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 356677777777888888888888877652 2245566667777777775 88888888888876533 67788888888
Q ss_pred HHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHc-cCCHHH
Q 005305 377 YSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSR-SGLSER 451 (703)
Q Consensus 377 y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~~~ 451 (703)
|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|+++++. .| +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888988888874 346778888888999999999999999999885 44 45778888888888 565566
Q ss_pred H-----HHHHHHhHhhcCCCCchHHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC--------
Q 005305 452 G-----WEIFQSMSRDHKIKPRAMHYACMIELLGREG--LLDEAFALIRGAPFKT-TKNMWAALLTACRVNG-------- 515 (703)
Q Consensus 452 a-----~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~a~~~~g-------- 515 (703)
| ...|+...+. -+-+...|..+..+|.+.| ++++|++.+.++...| +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 6 4778777762 2335678888888888888 6889998888774444 4567888888887764
Q ss_pred -ChhHHHHHHHHH-hCCCCCCcchHHHHHHHHHh
Q 005305 516 -NLELGKFAAEKL-YGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 516 -~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~ 547 (703)
..++|..+++++ .+++|.....|..++..+..
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999988888887776654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-11 Score=116.15 Aligned_cols=207 Identities=13% Similarity=-0.001 Sum_probs=127.3
Q ss_pred cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 005305 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376 (703)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 376 (703)
...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 4567777777777888888888887776642 2233444444444455555555555555444432
Q ss_pred HHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHH
Q 005305 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEI 455 (703)
Q Consensus 377 y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 455 (703)
..+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+...+...|++++|..+
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12344555555666666666666666666655323443 34555566666667777777777
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 456 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. .. +.+...+..+...+...|+.++|...++++.+..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 7666552 2234566667777777777777777777663 22 234556677777777788888888888888877887
Q ss_pred CcchH
Q 005305 534 KLSNY 538 (703)
Q Consensus 534 ~~~~~ 538 (703)
++...
T Consensus 242 ~~~~~ 246 (252)
T 2ho1_A 242 SLEYQ 246 (252)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 65443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=120.45 Aligned_cols=197 Identities=11% Similarity=0.089 Sum_probs=137.6
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 442 (703)
....+..+...|...|++++|...|+++.. .+...|..+...|...|++++|+..|+++.+.. ..+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445666677777888888888888887742 356677778888888888888888888887752 2245677777788
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELG 520 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a 520 (703)
+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888763 2345667778888888888888888888764 22 23567788888888888888888
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 888888888888888888888888888899999988888887543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.7e-11 Score=112.48 Aligned_cols=199 Identities=12% Similarity=-0.001 Sum_probs=124.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhc-CCH
Q 005305 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNH-GRG 414 (703)
Q Consensus 339 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~-g~~ 414 (703)
...+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|++.. ..+...|..+...|... |++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH
Confidence 333334444444444444443332 1133445555555556666666666665542 23455666667777777 777
Q ss_pred HHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 005305 415 EEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493 (703)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 493 (703)
++|+..|+++.+.+..|+ ...+..+..++...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.++
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777776333344 356666677777777788887777777662 23346677777778888888888888777
Q ss_pred hC-CC-C-CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHH
Q 005305 494 GA-PF-K-TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540 (703)
Q Consensus 494 ~m-~~-~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 540 (703)
+. .. + .+...|..+...+...|+.+.+...++.+.+..|+++.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 172 KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 63 22 2 355666666777788888888888888888788887655443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-10 Score=115.40 Aligned_cols=189 Identities=10% Similarity=-0.005 Sum_probs=131.7
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-CcccHHHHHHHHHH----cCCcHHHHHHHHHHHHCCCCCCHhhHHHH
Q 005305 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYAL----HGYSEEALDLYYEMRDSGVKMDHFTFSMI 338 (703)
Q Consensus 264 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 338 (703)
.++..+..+...|...|++++|.+.|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 46778888999999999999999999987664 56678889999999 999999999999998876 66677777
Q ss_pred HHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh----cCCHHHHHHHhhhcCc-CChhhHHHHHHHHH
Q 005305 339 IRICTR----LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK----WGRIEDARHVFDKMLC-KNVISWNALIAGYG 409 (703)
Q Consensus 339 l~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~ 409 (703)
...+.. .+++++|...+..+.+.+ +...+..+..+|.+ .|+.++|...|++..+ .+..++..+...|.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 777777 888888888888887764 55666666666666 6666666666665532 23444555555555
Q ss_pred h----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHh
Q 005305 410 N----HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR----SGLSERGWEIFQSMSR 461 (703)
Q Consensus 410 ~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~ 461 (703)
. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 5 555666666665555532 23344444445555 5555555555555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=119.57 Aligned_cols=212 Identities=15% Similarity=0.111 Sum_probs=125.6
Q ss_pred cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 005305 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376 (703)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 376 (703)
...|..+...+.+.|++++|+..|+++.+.. +.+. .++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~-----------------------------------~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDA-----------------------------------IPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCH-----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccH-----------------------------------HHHHHHHHH
Confidence 3455556666666666666666666665532 2233 344444445
Q ss_pred HHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHH
Q 005305 377 YSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453 (703)
Q Consensus 377 y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 453 (703)
|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. ..+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 555555555555555442 2244556666666777777777777777776642 224456666667777777777777
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCC
Q 005305 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531 (703)
Q Consensus 454 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 531 (703)
.+++.+.+. .+.+...+..+...|.+.|++++|.+.+++. .. +.+..+|..+...+...|+.++|...+++++++.
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777652 2345667777778888888888888887763 22 2356688888888899999999999999999999
Q ss_pred CCCcchHHHHHHHHHh
Q 005305 532 PEKLSNYVVLLNIYNS 547 (703)
Q Consensus 532 p~~~~~~~~l~~~y~~ 547 (703)
|+++..+..+..+...
T Consensus 224 p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHH 239 (243)
T ss_dssp TTCHHHHHHHTC----
T ss_pred cchHHHHHHHHHHHhh
Confidence 9888777666555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-11 Score=131.30 Aligned_cols=265 Identities=12% Similarity=0.006 Sum_probs=149.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Cc----ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 005305 268 VSCALIDMYSKCGSIEDAQGVFDEMSE--K-TT----VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340 (703)
Q Consensus 268 ~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 340 (703)
.+..+...|...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++..+...
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------ 117 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK------------ 117 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------------
Confidence 334455566666666666666665542 1 21 2455556666666666666666665543100
Q ss_pred HHhccCCHHHHHHHHHHHHHcCC-CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---------CChhhHHHHHHHHHh
Q 005305 341 ICTRLASLEHAKQAHAGLVRHGF-GLDIVANSALVDFYSKWGRIEDARHVFDKMLC---------KNVISWNALIAGYGN 410 (703)
Q Consensus 341 a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~ 410 (703)
+.+. .....++..+...|...|++++|...|++... ....+|..+...|..
T Consensus 118 -------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 118 -------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 0000 01223344444445555555555555444311 112345555555555
Q ss_pred cCC-----------------HHHHHHHHHHHHHc----CCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc
Q 005305 411 HGR-----------------GEEAVELFEQMLLN----GMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468 (703)
Q Consensus 411 ~g~-----------------~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 468 (703)
.|+ +++|+..+++..+. +-.|.. .++..+...+...|++++|..+++...+...-.++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 56666555554331 111221 35555566666677777777666665442111111
Q ss_pred ----hHHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC---
Q 005305 469 ----AMHYACMIELLGREGLLDEAFALIRGAP-F---KTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE--- 533 (703)
Q Consensus 469 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--- 533 (703)
...+..+...|...|++++|.+.+++.. . ..+ ..++..+...+...|++++|...+++++++.++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 2256666677777777777777765431 0 111 346667777778888888888888777655432
Q ss_pred ---CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 534 ---KLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 534 ---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
....|..++.+|.+.|++++|.+.+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 234788899999999999999999988764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-10 Score=114.72 Aligned_cols=227 Identities=10% Similarity=-0.048 Sum_probs=181.6
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCcc----cHHHHH
Q 005305 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE--KTTV----GWNTII 304 (703)
Q Consensus 231 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~----~~~~li 304 (703)
...+......+...|++++|...+..+++.. +.+..++..+...|...|++++|.+.|++..+ ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667788889999999999999999875 45666888999999999999999999998765 2333 388899
Q ss_pred HHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH-hhHHhcCCH
Q 005305 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV-DFYSKWGRI 383 (703)
Q Consensus 305 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li-~~y~k~g~~ 383 (703)
..|...|++++|+..|++..+.. +.+...+..+...+...|+++.|...+..+++.. +.+..++..+. ..|.+ +++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN-KEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999998863 3355788889999999999999999999998863 34667777787 55554 599
Q ss_pred HHHHHHhhhcCc---CChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCcCH------HHHHHHHHHHHccCCHH
Q 005305 384 EDARHVFDKMLC---KNVISWNALIAGYGNHGR---GEEAVELFEQMLLNG-MRPNH------VTFLAVLSACSRSGLSE 450 (703)
Q Consensus 384 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~ 450 (703)
++|.+.|++..+ .+...|..+...+...|+ +++|+..|++..+.. -.|+. .++..+...+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998843 346678888888888888 888999999988742 12431 45666777778888888
Q ss_pred HHHHHHHHhHh
Q 005305 451 RGWEIFQSMSR 461 (703)
Q Consensus 451 ~a~~~~~~m~~ 461 (703)
+|.+.|+.+.+
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888876
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-11 Score=124.53 Aligned_cols=225 Identities=11% Similarity=0.054 Sum_probs=190.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCC-HHHHHHHhhhcC---cCChhhHHHHHHHH
Q 005305 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR-IEDARHVFDKML---CKNVISWNALIAGY 408 (703)
Q Consensus 333 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~-~~~A~~~f~~m~---~~~~~~~~~li~~~ 408 (703)
..|..+..++...|++++|...+..+++... .+..+++.+...|.+.|+ +++|...|++.. ..+...|+.+...|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3456666777888999999999999999753 367889999999999997 999999999985 34678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh-cCChH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR-EGLLD 486 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~ 486 (703)
...|++++|+..|+++++. .| +...|..+..++.+.|++++|...|+.+.+. -+.+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999985 45 5588999999999999999999999999873 33467889999999999 67768
Q ss_pred HH-----HHHHHh-CCCCC-CHHHHHHHHHHHHHcC--ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC--------
Q 005305 487 EA-----FALIRG-APFKT-TKNMWAALLTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG-------- 549 (703)
Q Consensus 487 ~A-----~~~~~~-m~~~p-~~~~~~~ll~a~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-------- 549 (703)
+| ++.|++ +...| +...|..+...+...| +.++|...++++ +.+|+++..+..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 87 466665 33445 5678999998888888 689999999998 999999999999999999975
Q ss_pred -ChHHHHHHHHHH-Hh
Q 005305 550 -KLKEAAEVIRTL-RR 563 (703)
Q Consensus 550 -~~~~A~~~~~~m-~~ 563 (703)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 54
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-11 Score=126.13 Aligned_cols=196 Identities=15% Similarity=0.030 Sum_probs=123.6
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCC--------------------HHHHH
Q 005305 368 VANSALVDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGR--------------------GEEAV 418 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 418 (703)
.++..+...|...|++++|...|++... ++ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3444555555566666666655555421 11 2355566666666666 66666
Q ss_pred HHHHHHHHc----CCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc----hHHHHHHHHHHHhcCChHHHH
Q 005305 419 ELFEQMLLN----GMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR----AMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 419 ~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 489 (703)
..+++..+. +..|.. .++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666665431 112222 45666666777777777777777766542111122 236667777777888888887
Q ss_pred HHHHhCC----CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC------cchHHHHHHHHHhCCChHHHH
Q 005305 490 ALIRGAP----FKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK------LSNYVVLLNIYNSSGKLKEAA 555 (703)
Q Consensus 490 ~~~~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~ 555 (703)
+.+++.. ..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7776531 1112 3466777778888888888888888877554332 457888999999999999999
Q ss_pred HHHHHHHh
Q 005305 556 EVIRTLRR 563 (703)
Q Consensus 556 ~~~~~m~~ 563 (703)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-11 Score=122.79 Aligned_cols=197 Identities=15% Similarity=0.026 Sum_probs=128.2
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCC--------------------HHHHH
Q 005305 368 VANSALVDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGR--------------------GEEAV 418 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 418 (703)
.++..+...|...|++++|...|++... ++ ..++..+...|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 4455566666666666666666665421 11 2255666666666666 77777
Q ss_pred HHHHHHHHc----CCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc----hHHHHHHHHHHHhcCChHHHH
Q 005305 419 ELFEQMLLN----GMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR----AMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 419 ~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 489 (703)
..+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|.+.|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 776665431 11222 245666667777778888888777776542111111 236677777788888888888
Q ss_pred HHHHhCC----CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC------cchHHHHHHHHHhCCChHHHH
Q 005305 490 ALIRGAP----FKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK------LSNYVVLLNIYNSSGKLKEAA 555 (703)
Q Consensus 490 ~~~~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~ 555 (703)
+.+++.. ..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 8776531 1112 4466777778888889998888888887654432 347888999999999999999
Q ss_pred HHHHHHHhC
Q 005305 556 EVIRTLRRK 564 (703)
Q Consensus 556 ~~~~~m~~~ 564 (703)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999988754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-10 Score=107.50 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=121.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 475 (703)
+...|..+...|...|++++|++.|++.++. .|+ ..++..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4456666777777777777777777777664 343 356666677777777777777777777652 23345566666
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHH
Q 005305 476 IELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553 (703)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 553 (703)
...+...+++++|.+.+.+. ...| +...|..+...+...|++++|...++++++++|+++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 67777778888887777653 2223 566778888888888888888888888888899988889999999999999999
Q ss_pred HHHHHHHHHhCC
Q 005305 554 AAEVIRTLRRKG 565 (703)
Q Consensus 554 A~~~~~~m~~~~ 565 (703)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999998877643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-11 Score=131.44 Aligned_cols=207 Identities=11% Similarity=-0.010 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCH-HHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005305 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI-EDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQM 424 (703)
Q Consensus 349 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~-~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 424 (703)
+.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444443332 223566677777777777777 77777777763 234668888888888889999999999888
Q ss_pred HHcCCCcCHHHHHHHHHHHHcc---------CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhc--------CChHH
Q 005305 425 LLNGMRPNHVTFLAVLSACSRS---------GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE--------GLLDE 487 (703)
Q Consensus 425 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 487 (703)
.+. .|+...+..+..++... |++++|...|++..+. -+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 874 57777888888888888 8999999999988772 234577888888888888 88999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 488 AFALIRGA-PFKT----TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 488 A~~~~~~m-~~~p----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+..++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999874 3345 6789999999999999999999999999999999999999999999999999999976543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.27 E-value=9e-11 Score=124.55 Aligned_cols=98 Identities=11% Similarity=-0.107 Sum_probs=48.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCC----CchHHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HH
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIK----PRAMHYACMIELLGREGLLDEAFALIRGAP-F---KTT----KN 502 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~----~~ 502 (703)
++..+...+...|++++|...++...+...-. .....+..+...|.+.|++++|.+.+++.. . .++ ..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 34444444455555555555544443311000 012344555555555555555555554421 0 011 23
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCC
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEP 532 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 532 (703)
++..+...+...|+.++|...+++++++.+
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 555566666677777777777777665544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-08 Score=113.75 Aligned_cols=436 Identities=11% Similarity=-0.011 Sum_probs=283.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCC---hHHH
Q 005305 108 KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM---MIDA 184 (703)
Q Consensus 108 g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~---~~~A 184 (703)
....+.+..|+.....+ +-|..+|..++..+...+.++.++.+++.+++. ++.....|..-+..-.+.|. ++.+
T Consensus 46 ~~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp CCCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred cCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 34556677777777775 678999999999999999999999999999987 46677788888988888888 9999
Q ss_pred HHHHccCCC-----CCcccHHHHHHHHHhCCCh----hH----HHHHHHHhHH-cCC-CCCh-hhHHHHHHHHhc-----
Q 005305 185 RRLFDEMPE-----RNLVSCNMIIAGMIDSGDY----LE----AFLLFLDLWE-EFS-DCGS-RTFATMIRASAG----- 243 (703)
Q Consensus 185 ~~~f~~m~~-----~d~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~a~~~----- 243 (703)
..+|++... |++..|...+.-..+.++. ++ ..++|+.... -|. .|+. ..|...+.-...
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 999987653 6777888877765555443 23 3356665443 355 4543 344444433221
Q ss_pred ----CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHH
Q 005305 244 ----LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319 (703)
Q Consensus 244 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 319 (703)
.++++.++++|..++......-..+|......-...+. ..+.+++.+ ....++.|...
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHH
Confidence 12345566666666532111112233222111100000 001111111 11233344445
Q ss_pred HHHHHH--CCCC---------------C-----CH---hhHHHHHHHHhccC-------CHHHHHHHHHHHHHcCCCCch
Q 005305 320 YYEMRD--SGVK---------------M-----DH---FTFSMIIRICTRLA-------SLEHAKQAHAGLVRHGFGLDI 367 (703)
Q Consensus 320 ~~~m~~--~g~~---------------p-----d~---~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~g~~~~~ 367 (703)
+.++.. .++. | +. ..|...+.---..+ ..+....+|++++.. ++.+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 544322 1111 1 00 12222222211111 123456778888876 34477
Q ss_pred HHHHHHHhhHHhcCCHHHHH-HHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CcC--
Q 005305 368 VANSALVDFYSKWGRIEDAR-HVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM---------RPN-- 432 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~-~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~-- 432 (703)
.+|-..+..+...|+.++|. .+|++... .+...|-..+...-+.|++++|.++|+++..... .|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 88888888888999999996 99988742 4556688888888999999999999999986410 142
Q ss_pred ----------HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcC-ChHHHHHHHHhC-C-CCC
Q 005305 433 ----------HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG-LLDEAFALIRGA-P-FKT 499 (703)
Q Consensus 433 ----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~-~~p 499 (703)
...|...+....+.|.++.|+.+|..+.+..+ .+....|...+.+-.+.| +.+.|.++|+.. . .+.
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 23577777777888999999999999987311 122344544444444555 489999999874 2 233
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE---KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
+...|...+.-....|+.+.|+.++++++...|+ ....|...++.-.+.|..+.+.++.+++.+.-.
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6677888888888899999999999999988873 346788888888999999999999999987654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-10 Score=120.84 Aligned_cols=118 Identities=14% Similarity=-0.033 Sum_probs=61.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc----hHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HH
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR----AMHYACMIELLGREGLLDEAFALIRGAP----FKTT----KN 502 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~ 502 (703)
++..+...+...|++++|..+++...+...-.++ ...+..+...|.+.|++++|.+.+++.. ..++ ..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3444444455555555555555444321100011 3344555555556666666655554421 0111 33
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCC------CCCcchHHHHHHHHHhCCChH
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGME------PEKLSNYVVLLNIYNSSGKLK 552 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~ 552 (703)
++..+...+...|++++|...+++++++. |....++..++.+|...|+..
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 55666666777777777777777666442 223456777777887777653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-10 Score=118.50 Aligned_cols=62 Identities=13% Similarity=-0.078 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCC
Q 005305 471 HYACMIELLGREGLLDEAFALIRGAP----FKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 532 (703)
.+..+...|...|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++++++.+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 34444555555555555555544321 0011 23455566666666666666666666665544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=123.40 Aligned_cols=236 Identities=13% Similarity=0.054 Sum_probs=118.8
Q ss_pred cccHHHHHHHHHHcCCcHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHc------CC
Q 005305 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDS-------GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH------GF 363 (703)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~ 363 (703)
..+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|+++.|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777888888888888888888887652 11222334555555666666666666666666543 11
Q ss_pred -CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCcCH-HH
Q 005305 364 -GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN------GMRPNH-VT 435 (703)
Q Consensus 364 -~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t 435 (703)
+....++..+...|...|++++|...|++. .+. +-.|+. ..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------------------~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRA-------------------------------LEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-------------------------------HHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHH-------------------------------HHHHHHhcCCCChHHHHH
Confidence 112344455555555555555555555444 331 111211 33
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhc-----CCCC-chHHHHHHHHHHHhcCChHHHHHHHHhCC----------CCC
Q 005305 436 FLAVLSACSRSGLSERGWEIFQSMSRDH-----KIKP-RAMHYACMIELLGREGLLDEAFALIRGAP----------FKT 499 (703)
Q Consensus 436 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p 499 (703)
+..+...+...|++++|..+|+.+.+.. +..| ....+..+...|.+.|++++|.+.++++. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 3344444444444444444444443310 0011 12334444445555555555555444321 001
Q ss_pred C-------HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 500 T-------KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 500 ~-------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
. ...+..+...+...+.+.++...+++.....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 111222223333445555666667777777777788888999999999999999999887754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-09 Score=110.76 Aligned_cols=218 Identities=9% Similarity=0.056 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHh-------ccCCH-------HHHHHHHHHHHHcCCCCchHHHHHHHhhHHh
Q 005305 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICT-------RLASL-------EHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379 (703)
Q Consensus 314 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 379 (703)
++|+.+|++..... +-+...|......+. ..|+. ++|..+++.+++.-.+.+..++..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555665555431 223334444443332 23553 6666777766663122345567777777777
Q ss_pred cCCHHHHHHHhhhcCc--C-Chh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-ccCCHHHHHH
Q 005305 380 WGRIEDARHVFDKMLC--K-NVI-SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-RSGLSERGWE 454 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 454 (703)
.|++++|..+|++... | +.. .|..+...+.+.|++++|..+|++..+... ++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777632 2 233 677777777777777777777777776421 22233333322222 3577788888
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP----FKT--TKNMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 455 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
+|+...+. .+.+...|..+++.+.+.|++++|..+|++.- ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88777663 23356677777777777788888877777631 233 35577777777777788777777777777
Q ss_pred CCCCCCc
Q 005305 529 GMEPEKL 535 (703)
Q Consensus 529 ~~~p~~~ 535 (703)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.18 E-value=8.5e-10 Score=102.60 Aligned_cols=167 Identities=16% Similarity=0.066 Sum_probs=138.7
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 442 (703)
+..+|..|...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|+..+.+....... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 56788889999999999999999999874 346678888999999999999999999998875322 44666777778
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELG 520 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 520 (703)
+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999988772 3455778888999999999999999999874 3334 577899999999999999999
Q ss_pred HHHHHHHhCCCCCCc
Q 005305 521 KFAAEKLYGMEPEKL 535 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~ 535 (703)
...++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-10 Score=129.17 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=130.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 475 (703)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|.+.|++..+. -+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3456777777888888888888888887773 554 467777778888888888888888887762 22346778888
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHH
Q 005305 476 IELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553 (703)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 553 (703)
..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888763 3344 466888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 005305 554 AAEVIRTLRR 563 (703)
Q Consensus 554 A~~~~~~m~~ 563 (703)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-09 Score=109.00 Aligned_cols=228 Identities=10% Similarity=0.022 Sum_probs=159.9
Q ss_pred cccHHHHHH-HHhc----CCh----hHHHHHHHHHHHcCCCCCChhhHHHHHHHHh-------ccCCh-------HHHHH
Q 005305 95 AGICSQIEK-LVLN----KRY----REALELFEILEFEGGFDVGSSTYDALISACI-------GLRSI-------REVKR 151 (703)
Q Consensus 95 ~~~~~~li~-~~~~----g~~----~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~ 151 (703)
...|...+. -.++ ++. ++|+.+|+++.... +.+...|..+...+. ..|++ ++|..
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345777777 3333 233 67888999988764 556677777777665 34775 88999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC--C-Ccc-cHHHHHHHHHhCCChhHHHHHHHHhHHcCC
Q 005305 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--R-NLV-SCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227 (703)
Q Consensus 152 l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 227 (703)
+++..++.-.+.+...|..+...+.+.|++++|+++|++..+ | +.. .|..+...+.+.|++++|..+|++..+...
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 999988731134556888888889899999999999887654 3 333 788888888888999999999988876532
Q ss_pred CCChhhHHHHHHHH-hcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-------Cccc
Q 005305 228 DCGSRTFATMIRAS-AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-------TTVG 299 (703)
Q Consensus 228 ~p~~~t~~~ll~a~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-------~~~~ 299 (703)
++...|....... ...|+.+.|..+++.+++.. +.+..++..++..+.+.|++++|..+|++.... ....
T Consensus 166 -~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 166 -TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp -CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred -CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 2333343332222 23678888888888877763 456777777888888888888888888776441 2335
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHC
Q 005305 300 WNTIIAGYALHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 326 (703)
|..++..+.+.|+.++|..+++++.+.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777887777777664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.5e-10 Score=115.61 Aligned_cols=194 Identities=8% Similarity=-0.004 Sum_probs=102.7
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcCc-----C-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcCH-
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKMLC-----K-----NVISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPNH- 433 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~- 433 (703)
++..+...|...|++++|...|++... + ...+++.+...|...|++++|+..|++..+. +-.|..
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 444455555555555555555444311 1 1234555555566666666666666555432 111111
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhh---cCC-CCchHHHHHHHHHHHhcCChHHHHHHHHhCC-C-----CCC-HH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRD---HKI-KPRAMHYACMIELLGREGLLDEAFALIRGAP-F-----KTT-KN 502 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-----~p~-~~ 502 (703)
.++..+...+...|++++|...|+...+. .+. +.....+..+...|.+.|++++|.+.+++.- . .|. ..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555666666666666666555431 122 2224445556666666666666666665421 0 111 11
Q ss_pred HHHHHHHHHHHcCC---hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 503 MWAALLTACRVNGN---LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 503 ~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+..+...+...|+ .++|...+++. ...|.....+..|+.+|...|++++|.+.+++..+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23444445555565 55555555554 23333345677888888888888888888887754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.7e-11 Score=119.09 Aligned_cols=242 Identities=13% Similarity=0.067 Sum_probs=148.8
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC--------C---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHC-----
Q 005305 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE--------K---TTVGWNTIIAGYALHGYSEEALDLYYEMRDS----- 326 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 326 (703)
+.+..++..+...|...|++++|...|+++.+ . ...+|..+...|...|++++|+..|++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999988754 2 2346888899999999999999999998764
Q ss_pred -CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHc------CCCC-chHHHHHHHhhHHhcCCHHHHHHHhhhcCcC-
Q 005305 327 -GVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRH------GFGL-DIVANSALVDFYSKWGRIEDARHVFDKMLCK- 396 (703)
Q Consensus 327 -g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~- 396 (703)
+-.| ...++..+...+...|+++.|...+..+++. +..+ ...++..+...|.+.|++++|...|++....
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2222 3456778888899999999999999988764 2112 3345555666666666666666666554211
Q ss_pred ----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCC
Q 005305 397 ----------NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466 (703)
Q Consensus 397 ----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 466 (703)
...+|..+...|...|++++|+..|+++.+. .|+. .+ ....
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~-~~--------------------------~~~~ 234 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHER-EF--------------------------GSVD 234 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHH-HH--------------------------C---
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh-cC--------------------------CCCC
Confidence 1224444555555555555555555555442 0000 00 0001
Q ss_pred Cc-------hHHHHHHHHHHHhcCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 467 PR-------AMHYACMIELLGREGLLDEAFALIRGAPF-KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 467 p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
+. ...+..+...+...+.+.+|...++.... .| +..+|..+..++...|++++|...+++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 11222233334455566666666665432 23 3457888888899999999999999988877664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-09 Score=113.52 Aligned_cols=227 Identities=8% Similarity=-0.012 Sum_probs=156.1
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHcC--C----CCchHHHHH
Q 005305 304 IAGYALHGYSEEALDLYYEMRDS----GVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHG--F----GLDIVANSA 372 (703)
Q Consensus 304 i~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~~ 372 (703)
...+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+..+++.. . .....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33455566666666666666542 1111 12345555556666666666666666665421 1 012346777
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcCH-HHHHH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPNH-VTFLA 438 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ 438 (703)
+...|...|++++|...|++... ++ ..+++.+...|...|++++|+..|++..+. +..|+. .++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 78888888888888888877632 11 236788888999999999999999888762 332443 67888
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhc---CCCCchHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDH---KIKPRAMHYACMIELLGREGL---LDEAFALIRGAPFKTTK-NMWAALLTAC 511 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ll~a~ 511 (703)
+...+...|++++|...++...+.. +-+.....+..+...|...|+ +++|+.++++....|+. ..+..+...+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 8889999999999999998876521 111223345677888888898 89999999988655443 3667788899
Q ss_pred HHcCChhHHHHHHHHHhCC
Q 005305 512 RVNGNLELGKFAAEKLYGM 530 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~ 530 (703)
...|++++|...+++++++
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-09 Score=100.30 Aligned_cols=160 Identities=16% Similarity=0.054 Sum_probs=96.0
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005305 368 VANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 444 (703)
..+..+...|...|++++|...|+++.. .+...|..+...|...|++++|+..|+++.+. .
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~-------------- 72 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--A-------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C--------------
Confidence 3444455555555666666655555532 23344455555555555555555555555443 1
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHH
Q 005305 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP--FKTTKNMWAALLTACRVNGNLELGKF 522 (703)
Q Consensus 445 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~ 522 (703)
+.+...+..+...|...|++++|.+.++++. .+.+...|..+...+...|++++|..
T Consensus 73 ---------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 73 ---------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 2233444444555555555555555554421 12345566666777777777777777
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 523 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
.++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777777887788888888888888888888888877643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.3e-08 Score=103.25 Aligned_cols=224 Identities=11% Similarity=0.032 Sum_probs=132.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCC---CC--chHHHHHHHhhHHhcCCHHHHHHHhhhcCc----------C-ChhhHHH
Q 005305 340 RICTRLASLEHAKQAHAGLVRHGF---GL--DIVANSALVDFYSKWGRIEDARHVFDKMLC----------K-NVISWNA 403 (703)
Q Consensus 340 ~a~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----------~-~~~~~~~ 403 (703)
..+...|+++.|...+....+... .+ ...+.+.+...|...|++++|...+++... + ....+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 334444555555555544443110 00 112344555666667777777666665521 1 1234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC--c--CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHH-----H
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLNGMR--P--NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA-----C 474 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~ 474 (703)
+...|...|++++|...+++....... | ...++..+...+...|++++|...++.......-......+. .
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 666677777777777777776653211 1 124556666677777888888888777654211111111111 2
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-CCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC------CcchHHHHH
Q 005305 475 MIELLGREGLLDEAFALIRGAPF-KTT-----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE------KLSNYVVLL 542 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m~~-~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~ 542 (703)
.+..+...|++++|...+++... .|. ...+..+...+...|++++|...+++++...+. ....+..++
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 33446678888888888876431 121 224566677778888888888888777643321 123677788
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 005305 543 NIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 543 ~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+|...|+.++|.+.+++..+
T Consensus 301 ~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 899999999999999888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.5e-09 Score=100.82 Aligned_cols=204 Identities=11% Similarity=0.060 Sum_probs=142.4
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHH
Q 005305 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIA 406 (703)
Q Consensus 330 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~ 406 (703)
.|+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|...|++... .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355667777777888888888888888888876545666666688888888888888888887742 34557778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcC-H-------HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc---hHHHHHH
Q 005305 407 GYGNHGRGEEAVELFEQMLLNGMRPN-H-------VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR---AMHYACM 475 (703)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 475 (703)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+.+.+ +.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888888888888888888774 343 2 3466666777788888888888888765 3454 4566677
Q ss_pred HHHHHhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 476 IELLGREGLL--DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 476 i~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
...|...|+. ++|..+. ..+...+..+. ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777665543 3332221 12333333322 33456678999999999999999877776666553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=117.40 Aligned_cols=207 Identities=9% Similarity=-0.066 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCCh-HHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHh
Q 005305 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM-IDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222 (703)
Q Consensus 147 ~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~-~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m 222 (703)
+.+.+.++...+.. +.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|.+.|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433221 22344455555555555555 555555554432 23445555666666666666666666665
Q ss_pred HHcCCCCChhhHHHHHHHHhcC---------CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC--------CCHHHH
Q 005305 223 WEEFSDCGSRTFATMIRASAGL---------ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC--------GSIEDA 285 (703)
Q Consensus 223 ~~~g~~p~~~t~~~ll~a~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--------g~~~~A 285 (703)
.+. .|+...+..+...+... |++++|...+..+++.. +.+...+..+..+|... |++++|
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 543 34445555555566666 66666666666666654 44455666666666666 666666
Q ss_pred HHHHhhcCC------CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005305 286 QGVFDEMSE------KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358 (703)
Q Consensus 286 ~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 358 (703)
.+.|++..+ .+...|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|...+..+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666665532 244456666666666666666666666665542 223344555555666666666666544433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.6e-09 Score=99.46 Aligned_cols=188 Identities=10% Similarity=-0.006 Sum_probs=112.0
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC----KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVL 440 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 440 (703)
|+..+..+...|.+.|++++|...|++... ++...|..+...|...|++++|+..|++..+. .|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 445666666677777777777777776532 45555555666777777777777777776663 4443 5566666
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCch-------HHHHHHHHHHHhcCChHHHHHHHHh-CCCCCC---HHHHHHHHH
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKIKPRA-------MHYACMIELLGREGLLDEAFALIRG-APFKTT---KNMWAALLT 509 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~---~~~~~~ll~ 509 (703)
.++...|++++|...|+...+.. +.+. ..|..+...+.+.|++++|.+.|++ +...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 66777777777777777666521 1222 3455566666666677777666665 334454 234555554
Q ss_pred HHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 510 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
.+.. .+...++++..+.+.++..|..+ .....|.+++|.+.+++..+.
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 5433 33344455555555544333322 233445569999999888754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-08 Score=107.21 Aligned_cols=219 Identities=13% Similarity=0.048 Sum_probs=119.3
Q ss_pred hccCCHHHHHHHHHHHHHcC--CC---CchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-----C-----ChhhHHHHHHH
Q 005305 343 TRLASLEHAKQAHAGLVRHG--FG---LDIVANSALVDFYSKWGRIEDARHVFDKMLC-----K-----NVISWNALIAG 407 (703)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~-----~~~~~~~li~~ 407 (703)
...|+++.|...+..+.+.. .. ....++..+...|...|+++.|...+++... + ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 34455555555555554321 00 0123455555666666666666555554411 1 12345556666
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhc---CCCCchHHHHHHHHHH
Q 005305 408 YGNHGRGEEAVELFEQMLLN----GMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDH---KIKPRAMHYACMIELL 479 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~~ 479 (703)
|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|...|+...+.. +.+.....+..+...|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 66666666666666665542 11111 1345556666666777777776666654410 2222245566666667
Q ss_pred HhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC---hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 005305 480 GREGLLDEAFALIRGA----PF--KTT-KNMWAALLTACRVNGN---LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 549 (703)
.+.|++++|.+.+++. +. .|. ...+..+...+...++ .++|...+++. +..|.....+..++..|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 7777777777666542 11 122 2233444444445555 55555555542 222333456678888888889
Q ss_pred ChHHHHHHHHHHH
Q 005305 550 KLKEAAEVIRTLR 562 (703)
Q Consensus 550 ~~~~A~~~~~~m~ 562 (703)
++++|.+.+++..
T Consensus 351 ~~~~A~~~~~~al 363 (378)
T 3q15_A 351 HFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9888888887765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.9e-09 Score=95.39 Aligned_cols=158 Identities=13% Similarity=0.036 Sum_probs=120.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHH
Q 005305 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYG 409 (703)
Q Consensus 333 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~ 409 (703)
..+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667778889999999999999887754 3467889999999999999999999999874 346678888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 005305 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (703)
..|++++|++.|+++.+.. ..+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999988752 235567777777788888888888888877662 2234455555666666666666666
Q ss_pred HHHHh
Q 005305 490 ALIRG 494 (703)
Q Consensus 490 ~~~~~ 494 (703)
+.+++
T Consensus 165 ~~~~~ 169 (186)
T 3as5_A 165 PHFKK 169 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.02 E-value=9.4e-08 Score=99.76 Aligned_cols=257 Identities=12% Similarity=-0.023 Sum_probs=128.7
Q ss_pred HHHhCCChhHHHHHHHHhHHcCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCc----HHHHHHHHHH
Q 005305 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGF-GDN----VFVSCALIDM 275 (703)
Q Consensus 205 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~Li~~ 275 (703)
.+...|++++|...+++........+.. ++..+...+...|+++.|...+...++..- ..+ ..+.+.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666666665554432111111 233333444455555555555555443210 011 1234455566
Q ss_pred HHhCCCHHHHHHHHhhcCC-------C----CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCC--C--CHhhHHHHHH
Q 005305 276 YSKCGSIEDAQGVFDEMSE-------K----TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK--M--DHFTFSMIIR 340 (703)
Q Consensus 276 y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~t~~~ll~ 340 (703)
|...|++++|...|++... + ....+..+...|...|++++|...+++....... + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 6666776666666655431 1 0123444555666667777777776665543211 1 1233444555
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCc--h-HHHH---HHHhhHHhcCCHHHHHHHhhhcCcCC-------hhhHHHHHHH
Q 005305 341 ICTRLASLEHAKQAHAGLVRHGFGLD--I-VANS---ALVDFYSKWGRIEDARHVFDKMLCKN-------VISWNALIAG 407 (703)
Q Consensus 341 a~~~~~~~~~a~~~~~~~~~~g~~~~--~-~~~~---~Li~~y~k~g~~~~A~~~f~~m~~~~-------~~~~~~li~~ 407 (703)
.+...|++++|...++........++ . .... ..+..+...|+.++|...+++...++ ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 56666666666666666654311111 1 1111 23344666777777777776664321 1134555666
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 408 YGNHGRGEEAVELFEQMLLN----GMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
+...|++++|...+++.... |..++. .++..+..++...|+.++|...++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777777777777665442 111122 1344444555566666666666655543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-07 Score=99.31 Aligned_cols=225 Identities=10% Similarity=0.033 Sum_probs=153.5
Q ss_pred HHHHHcCCcHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCC-chHHHHHH
Q 005305 305 AGYALHGYSEEALDLYYEMRDSGV-KMD----HFTFSMIIRICTRLASLEHAKQAHAGLVRHG-----FGL-DIVANSAL 373 (703)
Q Consensus 305 ~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~-~~~~~~~L 373 (703)
..+...|++++|+..|++..+... .+| ..++..+...+...|+++.|...+..+++.. ..+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345566777777777776654311 122 2345555666667777777777776665521 111 24466777
Q ss_pred HhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcCHHHHHHHH
Q 005305 374 VDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPNHVTFLAVL 440 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll 440 (703)
...|...|++++|.+.|++... ++ ..+++.+...|...|++++|+..|++..+. +......++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 8888888888888888876632 11 246777888888899999999999888761 1122246777888
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCC---CCchHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHHH
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKI---KPRAMHYACMIELLGREGL---LDEAFALIRGAPFKTTK-NMWAALLTACRV 513 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ll~a~~~ 513 (703)
..+.+.|++++|..+++...+...- +.....+..+...|...|+ +++|+..+++....|+. ..+..+...+..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 8899999999999999888763322 2223456666677777888 88999999886654443 356678888899
Q ss_pred cCChhHHHHHHHHHhC
Q 005305 514 NGNLELGKFAAEKLYG 529 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~ 529 (703)
.|++++|...++++++
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999998888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.1e-09 Score=104.76 Aligned_cols=164 Identities=17% Similarity=0.137 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhc-----CCCC
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLN------GMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDH-----KIKP 467 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p 467 (703)
+|..+...|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+|+.+.+.. .-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4455555555555555555555555442 11122 2445555555666666666666665554420 0011
Q ss_pred -chHHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHHcCCh------hHHHHHHHHHhC
Q 005305 468 -RAMHYACMIELLGREGLLDEAFALIRGAP----------FKTT-KNMWAALLTACRVNGNL------ELGKFAAEKLYG 529 (703)
Q Consensus 468 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~-~~~~~~ll~a~~~~g~~------~~a~~~~~~~~~ 529 (703)
....+..+...|.+.|++++|.+.+++.. ..+. ...|..+.......+.. ..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 23445556666666666666666655421 1111 12233322222222222 222222222223
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 530 ~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
..|..+..+..++.+|...|++++|.+++++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566788899999999999999999988764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-08 Score=98.14 Aligned_cols=214 Identities=10% Similarity=-0.017 Sum_probs=109.4
Q ss_pred CHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHhccCCHHHHHHHH
Q 005305 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS----GVKMD-HFTFSMIIRICTRLASLEHAKQAH 355 (703)
Q Consensus 281 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~ 355 (703)
++++|...|++. ...|...|++++|++.|.+..+. |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477787777664 66677888888888888776542 21111 234455555555555555555555
Q ss_pred HHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCcC--
Q 005305 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH-GRGEEAVELFEQMLLNGMRPN-- 432 (703)
Q Consensus 356 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-- 432 (703)
..+++.. .+.|+...+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 101 ~~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~ 152 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQ 152 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTT
T ss_pred HHHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCC
Confidence 5544321 011111111 22455555566664 6666666666665542 111
Q ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCch-----HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 005305 433 -----HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA-----MHYACMIELLGREGLLDEAFALIRGA-PFKTTK 501 (703)
Q Consensus 433 -----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 501 (703)
..++..+...+...|++++|...|+...+...-.+.. ..|..+...+...|++++|...+++. ...|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2345555666666666666666666665521111111 13455555666666666666666653 223321
Q ss_pred H------HHHHHHHHHH--HcCChhHHHHHHHHHhCCCCC
Q 005305 502 N------MWAALLTACR--VNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 502 ~------~~~~ll~a~~--~~g~~~~a~~~~~~~~~~~p~ 533 (703)
. .+..++.++. ..+++++|...++++..++|.
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 1 2333444443 234455566666555555554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-08 Score=115.41 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=117.7
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLS 441 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 441 (703)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|+..|++.++. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 456677777777788888888877777632 34567777778888888888888888887773 554 467777777
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 519 (703)
++...|++++|.+.|++..+. -+-+...|..+..+|.+.|++++|++.|++. ...| +...|..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 888888888888888877662 2234667777888888888888888887763 3344 45677788888888888888
Q ss_pred HHHHHHHHhCCC
Q 005305 520 GKFAAEKLYGME 531 (703)
Q Consensus 520 a~~~~~~~~~~~ 531 (703)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 888777776543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-07 Score=93.54 Aligned_cols=197 Identities=13% Similarity=0.089 Sum_probs=110.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHc------CCC-CchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-----------
Q 005305 334 TFSMIIRICTRLASLEHAKQAHAGLVRH------GFG-LDIVANSALVDFYSKWGRIEDARHVFDKMLC----------- 395 (703)
Q Consensus 334 t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----------- 395 (703)
++..+...+...|+++.|...+..+++. +-. ....++..+...|...|++++|...|++...
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444445555555555555544432 111 1334556666666666666666666665521
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhc-----
Q 005305 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLN------GMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDH----- 463 (703)
Q Consensus 396 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----- 463 (703)
....+|..+...|...|++++|+..|++..+. +-.|+ ..++..+...+...|++++|..+++.+.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12345666777777777777777777777653 11333 3566777777888888888888887776520
Q ss_pred -CCCCc-hHHHHHHHHHHHhcC------ChHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCC
Q 005305 464 -KIKPR-AMHYACMIELLGREG------LLDEAFALIRGAPF-KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGM 530 (703)
Q Consensus 464 -~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 530 (703)
...+. ...+..+...+...+ .+.++...++.... .| ...++..+...+...|++++|...++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 223333333333322 34444445555432 23 2347788888999999999999999988764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=3.6e-08 Score=99.23 Aligned_cols=227 Identities=10% Similarity=0.022 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhh
Q 005305 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTR--LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392 (703)
Q Consensus 315 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 392 (703)
+|.+++++..+. .++....| .++ .. .++++.|...+..+ ...|...|++++|...|++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466666666654 23221112 222 21 12377777766665 4457788999999988887
Q ss_pred cCc-------C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHHcc-CCHHHHHHHHH
Q 005305 393 MLC-------K--NVISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPN-HVTFLAVLSACSRS-GLSERGWEIFQ 457 (703)
Q Consensus 393 m~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~-g~~~~a~~~~~ 457 (703)
... + ...+|+.+...|...|++++|+..|++..+. |-.+. ..++..+..++... |++++|...|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 632 1 1457889999999999999999999988763 11111 35788888999996 99999999999
Q ss_pred HhHhhcCCCCc----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHHHcCChhHHHHHH
Q 005305 458 SMSRDHKIKPR----AMHYACMIELLGREGLLDEAFALIRGA-PFKT---TK-----NMWAALLTACRVNGNLELGKFAA 524 (703)
Q Consensus 458 ~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~-----~~~~~ll~a~~~~g~~~~a~~~~ 524 (703)
+..+...-..+ ...+..+...|.+.|++++|.+.|++. ...| +. ..|..+..++...|+++.|...+
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88763211111 356888999999999999999999873 2222 21 15677778889999999999999
Q ss_pred HHHhCCCCCCcch-----HHHHHHHHH--hCCChHHHHHHHHHH
Q 005305 525 EKLYGMEPEKLSN-----YVVLLNIYN--SSGKLKEAAEVIRTL 561 (703)
Q Consensus 525 ~~~~~~~p~~~~~-----~~~l~~~y~--~~g~~~~A~~~~~~m 561 (703)
++.++++|+.... +..++..|. ..+++++|.+.++++
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 9999999985543 344566664 457788888877554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-07 Score=92.59 Aligned_cols=205 Identities=10% Similarity=0.018 Sum_probs=136.5
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcC-HHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC--K-N---VISWNALIAGYGNHGRGEEAVELFEQMLLNGM-RPN-HVTFL 437 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 437 (703)
+...+-.+...+.+.|++++|...|+.+.. | + ...|..+...|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455666677777788888888888887743 2 2 44666777778888888888888888877422 122 24455
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 005305 438 AVLSACSR--------SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509 (703)
Q Consensus 438 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 509 (703)
.+..++.. .|++++|...|+.+.+.+.- +......+.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 56666666 77888888888877763211 122222211111100000 112456777
Q ss_pred HHHHcCChhHHHHHHHHHhCCCCCC---cchHHHHHHHHHhC----------CChHHHHHHHHHHHhCCCccCCceeEEE
Q 005305 510 ACRVNGNLELGKFAAEKLYGMEPEK---LSNYVVLLNIYNSS----------GKLKEAAEVIRTLRRKGLRMLPACSWIE 576 (703)
Q Consensus 510 a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~----------g~~~~A~~~~~~m~~~~~~~~~~~s~~~ 576 (703)
.+...|++++|...++++++..|++ +..+..++.+|... |++++|.+.+++..+...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 8899999999999999999998984 34788999999877 999999999999876432
Q ss_pred ECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHH
Q 005305 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610 (703)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 610 (703)
.+|...+....+.++...+.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556666666666666543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.79 E-value=4.3e-07 Score=90.08 Aligned_cols=161 Identities=11% Similarity=-0.011 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-----chHHH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP-----RAMHY 472 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~~ 472 (703)
.++..+..++...|++++|++++.+.+..|..++. ..+...+..+.+.|+.+.|.+.++.|.+ ..| +..+.
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l 177 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHH
Confidence 33344445555555566666555555443321222 4444445555556666666666655544 233 13333
Q ss_pred HHHHHH--HHhcC--ChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCC----------CCCCcch
Q 005305 473 ACMIEL--LGREG--LLDEAFALIRGAPF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGM----------EPEKLSN 537 (703)
Q Consensus 473 ~~li~~--~~~~g--~~~~A~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----------~p~~~~~ 537 (703)
..|..+ ....| +..+|..+|+++.. .|+..+-..++.++.+.|++++|+..++.+.+. +|+++.+
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~ 257 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF 257 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence 333333 11222 56666666665422 233222233334556666666666666655554 3666666
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 538 YVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 538 ~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+..++.++...|+ +|.++++++.+.
T Consensus 258 LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 258 LANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 6666666666665 666666666643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-07 Score=82.08 Aligned_cols=130 Identities=19% Similarity=0.242 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHH
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 479 (703)
.|..+...|...|++++|+.+|+++.+.. ..+..++..+...+...|++++|..+++.+.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~-------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--D-------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C--------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--C--------------
Confidence 45555666666666666666666665532 113344444555555555555555555555431 1
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005305 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 559 (703)
+.+...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.++
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 12344455555556666666666666666666667767777777888888888888888877
Q ss_pred HHHhC
Q 005305 560 TLRRK 564 (703)
Q Consensus 560 ~m~~~ 564 (703)
++.+.
T Consensus 128 ~~~~~ 132 (136)
T 2fo7_A 128 KALEL 132 (136)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 77643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-07 Score=91.93 Aligned_cols=203 Identities=12% Similarity=0.006 Sum_probs=141.9
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C----ChhhH
Q 005305 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLC--K----NVISW 401 (703)
Q Consensus 330 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~----~~~~~ 401 (703)
.+...+-.....+...|++++|...+..+++..... ...++..+...|.+.|++++|...|+.... | ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345566677778889999999999999999865332 167788899999999999999999999853 2 13457
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHH
Q 005305 402 NALIAGYGN--------HGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472 (703)
Q Consensus 402 ~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 472 (703)
..+...+.. .|++++|+..|++.++. .|+. ..... ...+...... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHHHH
Confidence 777788888 99999999999999985 4543 22111 1111111110 01234
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CChhHHHHHHHHHhCCCCCCcc-
Q 005305 473 ACMIELLGREGLLDEAFALIRGA-PFKTT----KNMWAALLTACRVN----------GNLELGKFAAEKLYGMEPEKLS- 536 (703)
Q Consensus 473 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~p~~~~- 536 (703)
..+...|.+.|++++|...|++. ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56777888888888888888764 22233 34666677777655 8889999999999999998753
Q ss_pred --hHHHHHHHHHhCCChHH
Q 005305 537 --NYVVLLNIYNSSGKLKE 553 (703)
Q Consensus 537 --~~~~l~~~y~~~g~~~~ 553 (703)
++..+..++.+.|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 34455555555555444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=90.88 Aligned_cols=138 Identities=9% Similarity=-0.023 Sum_probs=90.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 487 (703)
...|++++|+..+++... ..|+. ..+..+...|.+.|++++|.+.|+...+. -+-+...|..+...|.+.|++++
T Consensus 8 ~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHH
Confidence 344555666666655443 23332 34445555666666666666666666552 22345566667777777777777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHH-HHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 488 AFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFA-AEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 488 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
|...|++. ...| +...|..+...+...|+.++|... ++++++++|+++.+|.....++.+.|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777653 3344 456777788888888887665554 588899999999999999888888775
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.72 E-value=2.9e-06 Score=91.65 Aligned_cols=99 Identities=6% Similarity=-0.034 Sum_probs=60.7
Q ss_pred cC-ChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCC-hHHH
Q 005305 107 NK-RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM-MIDA 184 (703)
Q Consensus 107 ~g-~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A 184 (703)
.| +...|..+|+.+... -|. ++.+.+.++|+..++. .|++.+|..-++.-.+.+. .+..
T Consensus 7 ~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp -----CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred cCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 45 377777777777664 233 7888888888888874 4688888887777766653 2344
Q ss_pred HHHHccCC------CCCcccHHHHHHHHH----hCCChhHHHHHHHHhHH
Q 005305 185 RRLFDEMP------ERNLVSCNMIIAGMI----DSGDYLEAFLLFLDLWE 224 (703)
Q Consensus 185 ~~~f~~m~------~~d~~~~~~li~~~~----~~g~~~~A~~~~~~m~~ 224 (703)
..+|+... ..+...|...+.-+. .+|+.+.+..+|++...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 45555422 134566776665443 23556677777777765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6e-07 Score=86.30 Aligned_cols=181 Identities=12% Similarity=0.031 Sum_probs=119.4
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH----HHH
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKMLC--KN----VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH----VTF 436 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~ 436 (703)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34555666778888888888888888753 32 245777778888888888888888888874 3432 133
Q ss_pred HHHHHHHHc------------------cCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 005305 437 LAVLSACSR------------------SGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIRGAPF 497 (703)
Q Consensus 437 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 497 (703)
..+..++.. .|+.++|...|+.+.+.+ |+ ...+.+.. +.+.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~----~l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATK----RLVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHH----HHHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHH----HHHHHHHHH--------
Confidence 333344432 356666666666665522 22 11111111 100000000
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 005305 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL---SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567 (703)
Q Consensus 498 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 567 (703)
......+...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112455677889999999999999999999875 56889999999999999999999999876643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.70 E-value=9.7e-07 Score=87.56 Aligned_cols=238 Identities=9% Similarity=-0.010 Sum_probs=155.4
Q ss_pred hCCCHHHHHHHHhhcCCCCccc-HHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 005305 278 KCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356 (703)
Q Consensus 278 ~~g~~~~A~~~f~~m~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~ 356 (703)
-.|.+..++.-...+...+... ---+.++|...|++.... .-.|....+..+.. |...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHHHH
Confidence 3577777776555554322222 222346777777765321 12333323332222 22222 455566
Q ss_pred HHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 005305 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-----KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431 (703)
Q Consensus 357 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 431 (703)
..+..+ .++......+..+|...|++++|.+++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 665544 34445556788888999999999999988743 24556777888999999999999999999874 66
Q ss_pred -----CHHHHHHHHHHH--HccC--CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-----
Q 005305 432 -----NHVTFLAVLSAC--SRSG--LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF----- 497 (703)
Q Consensus 432 -----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 497 (703)
+..+...+..++ ...| +.++|..+|+++... .|+......+..++.+.|++++|.+.++.+..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 366666676663 3334 899999999998663 34423333444478899999999999875321
Q ss_pred ------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 498 ------KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 498 ------~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
.| |+.+...++......|+ .|.+..+++.+..|+++..
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 14 45566567666667776 7889999999999998643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.3e-07 Score=79.17 Aligned_cols=124 Identities=21% Similarity=0.229 Sum_probs=101.4
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 445 (703)
.+..+...|...|++++|...|+++. ..+...|..+...+...|++++|+..|+++...+ ..+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56788899999999999999999874 3467788889999999999999999999998863 2355677888888999
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
.|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999988763 2345667777778888888888888777653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.9e-08 Score=109.28 Aligned_cols=168 Identities=8% Similarity=-0.075 Sum_probs=107.0
Q ss_pred HhcCCHHHHHHHhhhcC-----------cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHc
Q 005305 378 SKWGRIEDARHVFDKML-----------CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSR 445 (703)
Q Consensus 378 ~k~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 445 (703)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45666666666666654 234456666666777777777777777776663 34 33566666666777
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFA 523 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 523 (703)
.|++++|...|++..+. -+.+...|..+...|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776652 12245566667777777777777 6666653 2233 455677777777777777777777
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 524 AEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 524 ~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
++++++++|++..+|..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777777777777777777777766554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.7e-07 Score=90.67 Aligned_cols=175 Identities=10% Similarity=-0.054 Sum_probs=134.5
Q ss_pred HHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 383 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
.+.....+......+...+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...++.+.+
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344444555555455566777778888899999999999998875 554 46777888889999999999999988865
Q ss_pred hcCCCCchHHHHHHH-HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC--cc
Q 005305 462 DHKIKPRAMHYACMI-ELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK--LS 536 (703)
Q Consensus 462 ~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~ 536 (703)
..|+........ ..+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ ..
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 235544333322 2356777888888887763 2334 57788999999999999999999999999999987 78
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 537 NYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 537 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.+..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999998887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-06 Score=82.34 Aligned_cols=162 Identities=7% Similarity=-0.054 Sum_probs=116.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccC----CHHHHHHHHHHhHhhcCCCCchHH
Q 005305 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG----LSERGWEIFQSMSRDHKIKPRAMH 471 (703)
Q Consensus 396 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~ 471 (703)
.++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|.++|+...+ . .+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHH
Confidence 455666666666666777777777777776654 34455555555555 5 77788887777765 2 34556
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhCCC-CCC---HHHHHHHHHHHHH----cCChhHHHHHHHHHhCCCCCCcchHH
Q 005305 472 YACMIELLGR----EGLLDEAFALIRGAPF-KTT---KNMWAALLTACRV----NGNLELGKFAAEKLYGMEPEKLSNYV 539 (703)
Q Consensus 472 ~~~li~~~~~----~g~~~~A~~~~~~m~~-~p~---~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 539 (703)
+..|..+|.. .+++++|.+.|++... .|. +..+..|...+.. .++.++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6677777766 6788888888877433 332 6677778778877 77899999999999887 55677899
Q ss_pred HHHHHHHhC-C-----ChHHHHHHHHHHHhCCC
Q 005305 540 VLLNIYNSS-G-----KLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 540 ~l~~~y~~~-g-----~~~~A~~~~~~m~~~~~ 566 (703)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999765 3 89999999999887663
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-06 Score=99.26 Aligned_cols=190 Identities=12% Similarity=0.003 Sum_probs=147.4
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhc
Q 005305 343 TRLASLEHAKQAHAGLV--------RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNH 411 (703)
Q Consensus 343 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 411 (703)
...+++++|.+.++.++ +.. +.+...+..+...|.+.|++++|...|++... .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67889999999999888 432 34667888899999999999999999998853 4677899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 005305 412 GRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490 (703)
Q Consensus 412 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 490 (703)
|++++|+..|++..+. .|+. ..+..+..++.+.|++++ .+.|+.+.+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999984 5644 778888899999999999 9999998872 23456788999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCC-----hhHHHHHHHHHhCCCCCCcchH
Q 005305 491 LIRGA-PFKTT-KNMWAALLTACRVNGN-----LELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 491 ~~~~m-~~~p~-~~~~~~ll~a~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
.|++. ...|+ ...|..+..++...++ .+...++.+.+..+.++++..+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99985 45676 4577777777766554 3444555555556655554433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-06 Score=82.00 Aligned_cols=126 Identities=10% Similarity=0.005 Sum_probs=94.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhc
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 482 (703)
+...|.+.|++++|+..|++.++. .| +...+..+..++...|++++|...|+.+.+. -+.+...+..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 788889999999999999999885 45 4577888888899999999999999998872 234567788888887665
Q ss_pred CC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 483 GL--LDEAFALIRGAPFKTTKN--MWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 483 g~--~~~A~~~~~~m~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
|. .+++...++... .|+.. .|..+..++...|++++|...+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 445566666543 34433 44445566677899999999999999999973
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.7e-07 Score=99.71 Aligned_cols=159 Identities=11% Similarity=-0.002 Sum_probs=123.5
Q ss_pred cCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHH
Q 005305 380 WGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEI 455 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 455 (703)
.|++++|.+.|++... .+...|..+...|...|++++|++.|++..+. .|+ ..++..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998853 35678999999999999999999999999884 554 57888888999999999999999
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChhHHHHHHHHHhCC
Q 005305 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVN---GNLELGKFAAEKLYGM 530 (703)
Q Consensus 456 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~ 530 (703)
+++..+. -+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 2445778999999999999999999999874 2334 567888999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 005305 531 EPEKLSNYVVLL 542 (703)
Q Consensus 531 ~p~~~~~~~~l~ 542 (703)
+|++...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887776
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=85.02 Aligned_cols=120 Identities=10% Similarity=-0.009 Sum_probs=99.2
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNL 517 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~ 517 (703)
..+...|++++|...+..... ..|+ ...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 345566889999999887754 2333 445667899999999999999999874 3445 677999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHH-HHHHHh
Q 005305 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV-IRTLRR 563 (703)
Q Consensus 518 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~-~~~m~~ 563 (703)
++|...++++++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887765 476654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.7e-07 Score=81.77 Aligned_cols=75 Identities=9% Similarity=-0.018 Sum_probs=59.4
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 488 AFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK--LSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 488 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44455442 2234 56788888888899999999999999999999874 4588999999999999999999888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-06 Score=86.44 Aligned_cols=220 Identities=13% Similarity=0.041 Sum_probs=153.5
Q ss_pred cCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHH
Q 005305 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389 (703)
Q Consensus 310 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 389 (703)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567889999988876531 111 0 11146677776666554 4567788899998888
Q ss_pred hhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCcC--HHHHHHHHHHHHccCCHHHHHHH
Q 005305 390 FDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLNG---MRPN--HVTFLAVLSACSRSGLSERGWEI 455 (703)
Q Consensus 390 f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 455 (703)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 887632 11 3478888889999999999999998876521 1222 2567778888888 999999999
Q ss_pred HHHhHhhcCCCC----chHHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCChhHHHHH
Q 005305 456 FQSMSRDHKIKP----RAMHYACMIELLGREGLLDEAFALIRGAP-F---KTT----KNMWAALLTACRVNGNLELGKFA 523 (703)
Q Consensus 456 ~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~----~~~~~~ll~a~~~~g~~~~a~~~ 523 (703)
|+...+...-.. ....+..+...|.+.|++++|++.|++.. . .++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998865321111 14578888999999999999999998642 1 122 22566666777788999999999
Q ss_pred HHHHhCCCCCCcch-----HHHHHHHHHhCCChHHHHHH
Q 005305 524 AEKLYGMEPEKLSN-----YVVLLNIYNSSGKLKEAAEV 557 (703)
Q Consensus 524 ~~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~A~~~ 557 (703)
+++.+ +.|+.... ...++..| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 99975433 34455555 56777766663
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-06 Score=79.70 Aligned_cols=156 Identities=12% Similarity=0.027 Sum_probs=103.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHH-Hh
Q 005305 167 MRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA-SA 242 (703)
Q Consensus 167 ~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~ 242 (703)
....+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|+...... |+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344555666677777777777777664 345667777777777777777777777665432 233222111111 11
Q ss_pred cCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC-----cccHHHHHHHHHHcCCcHHHH
Q 005305 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT-----TVGWNTIIAGYALHGYSEEAL 317 (703)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~~g~~~~A~ 317 (703)
..+....+...+..+++.. +.+...+..+...|.+.|++++|...|+++.+.+ ...|..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122234567777777664 5567888888888999999999999888875432 347888888888899999998
Q ss_pred HHHHHHHH
Q 005305 318 DLYYEMRD 325 (703)
Q Consensus 318 ~l~~~m~~ 325 (703)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-05 Score=79.27 Aligned_cols=214 Identities=13% Similarity=0.060 Sum_probs=99.1
Q ss_pred CcHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchHHHHHHHhhH----Hhc---C
Q 005305 312 YSEEALDLYYEMRDSGVKMDHFT-FSMIIRICTRLA--SLEHAKQAHAGLVRHGFGLDIVANSALVDFY----SKW---G 381 (703)
Q Consensus 312 ~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y----~k~---g 381 (703)
..++|++++.++... .|+..| ++.--..+...+ .++++...+..++....+ +..+|+.--..+ .+. +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 345677777666654 344333 333333444444 555666655555554322 333333322222 222 4
Q ss_pred CHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCC------HH
Q 005305 382 RIEDARHVFDKML---CKNVISWNALIAGYGNHGRGE--EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL------SE 450 (703)
Q Consensus 382 ~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~ 450 (703)
+++++..+++.+. .+|..+|+.-.-.+.+.|.++ ++++.++++++.... |...|+.-.....+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 4555555555442 233344444444444444444 555555555543222 33344433333333333 34
Q ss_pred HHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHhC
Q 005305 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE-LGKFAAEKLYG 529 (703)
Q Consensus 451 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~-~a~~~~~~~~~ 529 (703)
++.++++.+.. --+- |...|.-+...+...|... .....+.++++
T Consensus 204 eEl~~~~~aI~--~~p~--------------------------------n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 204 EELNYVKDKIV--KCPQ--------------------------------NPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHHHHHHHH--HCSS--------------------------------CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred HHHHHHHHHHH--hCCC--------------------------------CccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 44444443333 1122 4445555555554444422 23334444444
Q ss_pred CC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 530 ME---PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 530 ~~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
++ |.++.++..++++|.+.|+.++|.++++.+.+
T Consensus 250 ~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 250 LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 33 55555666666666666666666666666553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=5.1e-07 Score=80.40 Aligned_cols=97 Identities=10% Similarity=0.031 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...+++++.++|+++..|..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3556677788888999999999998874 2234 6778889999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 005305 546 NSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 546 ~~~g~~~~A~~~~~~m~~~ 564 (703)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-06 Score=86.42 Aligned_cols=90 Identities=8% Similarity=-0.068 Sum_probs=42.5
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcCcC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcCH-H
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKMLCK---------NVISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPNH-V 434 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~ 434 (703)
+++.+...|.+ |++++|...|++...- ...+++.+...|.+.|++++|+..|++..+. +..++. .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34444555555 5555555555544210 0234555555566666666666666555441 111111 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHh
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSM 459 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m 459 (703)
++..+..++...|++++|...|+..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444444445555555555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=95.78 Aligned_cols=146 Identities=20% Similarity=0.068 Sum_probs=104.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 005305 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELF 421 (703)
Q Consensus 345 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 421 (703)
.|++++|...++.+++... .+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4678888888888877532 3577888889999999999999999988743 35668888888999999999999999
Q ss_pred HHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhc---CChHHHHHHHHhC
Q 005305 422 EQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE---GLLDEAFALIRGA 495 (703)
Q Consensus 422 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 495 (703)
++..+. .| +...+..+..++...|++++|.+.|+...+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 998875 44 4577888888899999999999999988773 234567788888888888 9999999888764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.46 E-value=8.9e-07 Score=78.92 Aligned_cols=101 Identities=8% Similarity=-0.012 Sum_probs=86.7
Q ss_pred CCCc-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 465 IKPR-AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 465 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3443 456777788888999999999999874 3344 677899999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCC
Q 005305 542 LNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 542 ~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+.+|.+.|++++|.+.+++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.46 E-value=6.9e-05 Score=74.89 Aligned_cols=222 Identities=10% Similarity=-0.021 Sum_probs=147.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcC--CcHHHHHHHHHHHHCCCCCCHhhHHHHHHHH--
Q 005305 270 CALIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHG--YSEEALDLYYEMRDSGVKMDHFTFSMIIRIC-- 342 (703)
Q Consensus 270 ~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-- 342 (703)
..+.....+....++|++.++.+..- +...|+.--..+...| +++++++.+..+...+.+ +...++.--..+
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHH
Confidence 33333444445557999999988653 4456888777888888 999999999999886422 333444333333
Q ss_pred --hcc---CCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHH--HHHHHhhhcCc---CChhhHHHHHHHHHhcC
Q 005305 343 --TRL---ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE--DARHVFDKMLC---KNVISWNALIAGYGNHG 412 (703)
Q Consensus 343 --~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~--~A~~~f~~m~~---~~~~~~~~li~~~~~~g 412 (703)
... ++++++..++..+++... .+..+|+--.-.+.+.|.++ ++.+.++++.+ .|...|+.-...+...|
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 444 789999999999998753 37788888777778888888 99999998854 56678887777777777
Q ss_pred C------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH-HHHHHHHHHhHhhc-CCCCchHHHHHHHHHHHhcCC
Q 005305 413 R------GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS-ERGWEIFQSMSRDH-KIKPRAMHYACMIELLGREGL 484 (703)
Q Consensus 413 ~------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~g~ 484 (703)
. ++++++.+++++...+. |...|+.+-..+.+.|.. +....+...+.+.. .-..+...+..+++.|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 6 89999999999986433 567777777777666653 23344444443310 011233444455555555555
Q ss_pred hHHHHHHHHh
Q 005305 485 LDEAFALIRG 494 (703)
Q Consensus 485 ~~~A~~~~~~ 494 (703)
.++|.+.++.
T Consensus 274 ~~~A~~~~~~ 283 (306)
T 3dra_A 274 YNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.6e-06 Score=81.80 Aligned_cols=185 Identities=11% Similarity=-0.034 Sum_probs=130.1
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CCh----hhHHH
Q 005305 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLC--KNV----ISWNA 403 (703)
Q Consensus 332 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~~----~~~~~ 403 (703)
...+-.....+...|++++|...++.+++..... ....+..+...|.+.|++++|...|++... |+. .+|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445556677888999999999999999865432 245778889999999999999999999853 322 14444
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHhHhhcC
Q 005305 404 LIAGYGN------------------HGRGEEAVELFEQMLLNGMRPNHV-TFLAVLSACSRSGLSERGWEIFQSMSRDHK 464 (703)
Q Consensus 404 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 464 (703)
+...+.. .|+.++|+..|+++++. .|+.. ...... + ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----R------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----H------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----H------HHHHHHHHH----
Confidence 5555543 57899999999999984 56552 221111 0 001111111
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 465 IKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 465 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|...++.+....|++..+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235677888999999999999874 22343 2468888899999999999999999999888887553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5.6e-06 Score=82.75 Aligned_cols=160 Identities=8% Similarity=-0.005 Sum_probs=92.6
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC--CCcccHHHH-H
Q 005305 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMI-I 203 (703)
Q Consensus 127 ~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~l-i 203 (703)
+.+...+..+...+...|++++|.+.++.+++.. +.+...+..|...|.+.|++++|...|++... |+...+... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3344556666667777888888888888887764 44556777777888888888888888887765 433222211 1
Q ss_pred HHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHH
Q 005305 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283 (703)
Q Consensus 204 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 283 (703)
..+.+.++.++|+..|++.... . +.+...+..+...|...|+++
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~-----------------------------------~-P~~~~~~~~la~~l~~~g~~~ 236 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAE-----------------------------------N-PEDAALATQLALQLHQVGRNE 236 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhcccCccHHHHHHHHhc-----------------------------------C-CccHHHHHHHHHHHHHcccHH
Confidence 2244455555666666555443 2 334444555555555555555
Q ss_pred HHHHHHhhcCC--C---CcccHHHHHHHHHHcCCcHHHHHHHHHH
Q 005305 284 DAQGVFDEMSE--K---TTVGWNTIIAGYALHGYSEEALDLYYEM 323 (703)
Q Consensus 284 ~A~~~f~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 323 (703)
+|...|.++.. | +...+..+...|...|+.++|...|++.
T Consensus 237 ~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 237 EALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 55555554432 1 1334555555555555555555555543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.43 E-value=4.6e-05 Score=82.25 Aligned_cols=342 Identities=13% Similarity=0.068 Sum_probs=180.5
Q ss_pred ccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCC-hhHHHHHHHHHHHc-CCCCCChhhHHHHHHHHh
Q 005305 65 GLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKR-YREALELFEILEFE-GGFDVGSSTYDALISACI 141 (703)
Q Consensus 65 li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~-~~~A~~l~~~m~~~-~~~~p~~~t~~~ll~~~~ 141 (703)
.+..+.. ++.+.+ +.+|......-|++-.|..-+. ..+.+. .+....+|+..... |.-+++...|...+..+.
T Consensus 21 ~l~~~P~-~~~e~~---~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~ 96 (493)
T 2uy1_A 21 ARRLYMS-KDYRSL---ESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEG 96 (493)
T ss_dssp HHHHHHT-TCHHHH---HHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTS
T ss_pred HHHHCCC-CCHHHH---HHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 3333333 678888 9999877766678889999998 555553 45677788887764 311345667777776554
Q ss_pred c----cCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhC-----------------CChHHHHHHHccCCC----CCc
Q 005305 142 G----LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC-----------------GMMIDARRLFDEMPE----RNL 196 (703)
Q Consensus 142 ~----~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~-----------------g~~~~A~~~f~~m~~----~d~ 196 (703)
. .++++.++++++.+++.. +.. ...+-..|... +.+..|+.+++.+.. .+.
T Consensus 97 ~~~~~~~~~~~vR~iy~rAL~~P--~~~--~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 97 KIEDEQTRIEKIRNGYMRALQTP--MGS--LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTSC--CTT--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred hchhhhHHHHHHHHHHHHHHhCh--hhh--HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 2 356788999999998742 211 12222222211 122223333332221 133
Q ss_pred ccHHHHHHHHHhCCC-------hhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHH
Q 005305 197 VSCNMIIAGMIDSGD-------YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269 (703)
Q Consensus 197 ~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 269 (703)
..|...+.--..++. .+.+..+|+++.... +.+...|...+.-+...|+.+.|..+++.+++. +.+...+
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 356555543222211 234556777776543 224555666666666777888888888887777 4444444
Q ss_pred HHHHHHHHhCCCHHHH-HHHHhhcC--C----------CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHH
Q 005305 270 CALIDMYSKCGSIEDA-QGVFDEMS--E----------KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336 (703)
Q Consensus 270 ~~Li~~y~~~g~~~~A-~~~f~~m~--~----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 336 (703)
.. |+...+.++. ..+.+... + .....|...+....+.+..+.|..+|.+. .. ...+...|.
T Consensus 250 ~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i 323 (493)
T 2uy1_A 250 LY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFI 323 (493)
T ss_dssp HH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHH
T ss_pred HH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHH
Confidence 32 2221111111 11111110 0 01123555555555566677777777766 21 112222232
Q ss_pred HHHHHHh-ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHH
Q 005305 337 MIIRICT-RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415 (703)
Q Consensus 337 ~ll~a~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 415 (703)
.....-. ..++.+.|+.+++..++.. +.++..+...++...+.|+.+.|+.+|+.+. +....|...+.-=...|+.+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHH
Confidence 1111111 1235677777777776643 2234445556666666777777777777663 24555666665555566666
Q ss_pred HHHHHHHHHH
Q 005305 416 EAVELFEQML 425 (703)
Q Consensus 416 ~A~~l~~~m~ 425 (703)
.+..+++++.
T Consensus 402 ~~r~v~~~~~ 411 (493)
T 2uy1_A 402 LFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666555
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=6e-06 Score=78.13 Aligned_cols=135 Identities=11% Similarity=-0.017 Sum_probs=80.3
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHc
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSR 445 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 445 (703)
.+.+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++.++. .|+ ..++..+..++..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3446677777777777777777763 235567777777777778888888888777774 443 4566666666555
Q ss_pred cCC--HHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHHHHHHH
Q 005305 446 SGL--SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTKNMWAALLT 509 (703)
Q Consensus 446 ~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~ll~ 509 (703)
.|. .+.+...+..... ..|....+..+...+...|++++|...|++ +...|+......+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 443 2334444443321 122222333345555667788888888776 455677655544433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-06 Score=75.26 Aligned_cols=109 Identities=8% Similarity=-0.044 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 511 (703)
..+......+.+.|++++|.+.|+...+. -+.+...|..+...|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34445555566666666666666655541 2234555555666666666666666665542 2222 345666666666
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHH
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 544 (703)
...|++++|...++++++++|++..++..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 666777777777777777777666665555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.7e-06 Score=78.87 Aligned_cols=123 Identities=8% Similarity=-0.071 Sum_probs=89.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC
Q 005305 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNG 515 (703)
Q Consensus 438 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g 515 (703)
.+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.+++. .. +.+...|..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34445556666666666665442 345666666666677777777777666653 12 234567777777888888
Q ss_pred ChhHHHHHHHHHhCCCCCCc----------------chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 516 NLELGKFAAEKLYGMEPEKL----------------SNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
++++|...++++++..|++. ..+..++.+|.+.|++++|.+.+++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888888777766 889999999999999999999999988654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=8.8e-06 Score=76.91 Aligned_cols=145 Identities=8% Similarity=-0.088 Sum_probs=96.5
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 449 (703)
+..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..+.. ..+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556667777888888888887777777777777778888888888888887777642 22446666677777777777
Q ss_pred HHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT-KNMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 450 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
++|...|+...+...-.+... +...| +...|+ ...|..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777765211111000 00000 012232 3567778888888888888888888888
Q ss_pred CCCCCC
Q 005305 529 GMEPEK 534 (703)
Q Consensus 529 ~~~p~~ 534 (703)
++.|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-05 Score=78.73 Aligned_cols=159 Identities=9% Similarity=-0.040 Sum_probs=112.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHH----HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc----hHHHHH
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLNG-MRPNHV----TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR----AMHYAC 474 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 474 (703)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 123321 2234555666677888888888888762222222 235788
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC------cchHH
Q 005305 475 MIELLGREGLLDEAFALIRGAP-------F-KTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK------LSNYV 539 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 539 (703)
+...|...|++++|.+.+++.- . .+. ..++..+...|...|++++|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888888876632 1 112 2367788888999999999999988887654332 56799
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHH
Q 005305 540 VLLNIYNSSGK-LKEAAEVIRTLR 562 (703)
Q Consensus 540 ~l~~~y~~~g~-~~~A~~~~~~m~ 562 (703)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999998875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-05 Score=80.72 Aligned_cols=164 Identities=7% Similarity=-0.062 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-H----HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCC--CCc--h
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-H----VTFLAVLSACSRSGLSERGWEIFQSMSRDHKI--KPR--A 469 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~ 469 (703)
..+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455566777888888888888887776422211 1 12333445567778888888888877642111 111 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC------C
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGAP----FKTT-----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE------K 534 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------~ 534 (703)
..|+.+...|...|++++|.+.+++.. ..|+ ..++..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 477888888888898888888887632 1222 247788888889999999999998888755432 1
Q ss_pred cchHHHHHHHHHhCCChHHH-HHHHHHHH
Q 005305 535 LSNYVVLLNIYNSSGKLKEA-AEVIRTLR 562 (703)
Q Consensus 535 ~~~~~~l~~~y~~~g~~~~A-~~~~~~m~ 562 (703)
..+|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 46788999999999999999 77777654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.37 E-value=8.8e-06 Score=77.20 Aligned_cols=125 Identities=13% Similarity=0.040 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-CcccHHHHHHHHHHcC----CcHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 005305 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHG----YSEEALDLYYEMRDSGVKMDHFTFSMII 339 (703)
Q Consensus 265 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll 339 (703)
++..+..|..+|...+++++|.+.|++..+. ++.++..+...|.. + ++++|+..|++..+.| +...+..+-
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4444555555555555555555555554332 33344444444444 3 4555555555554433 223333333
Q ss_pred HHHhc----cCCHHHHHHHHHHHHHcCCC-CchHHHHHHHhhHHh----cCCHHHHHHHhhhc
Q 005305 340 RICTR----LASLEHAKQAHAGLVRHGFG-LDIVANSALVDFYSK----WGRIEDARHVFDKM 393 (703)
Q Consensus 340 ~a~~~----~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m 393 (703)
..+.. .++.++|...+....+.|.. .++..+..|..+|.. .++.++|...|++.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 33333 34444444444444443321 013344444444444 34444444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.37 E-value=6.7e-07 Score=89.27 Aligned_cols=190 Identities=8% Similarity=-0.056 Sum_probs=114.0
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHH
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSA 442 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 442 (703)
...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..+++..+. .|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3455556666667777777777776653 235566666777777777777777777776653 443 3566666677
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCch-HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRA-MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~ 521 (703)
+...|++++|...|+...+.. |+. ..+...+....+.+....... .......++......+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 777777777777777665421 211 011111111111111111111 2222333344333333 222 368888999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhC-CChHHHHHHHHHHHhC
Q 005305 522 FAAEKLYGMEPEKLSNYVVLLNIYNSS-GKLKEAAEVIRTLRRK 564 (703)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~~ 564 (703)
..++++++.+|++......+...+.+. +++++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777777 7899999999988653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=4.8e-06 Score=73.29 Aligned_cols=96 Identities=11% Similarity=-0.058 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...+++++.++|+++..|..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445566677788889999999888874 2234 67788889999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 005305 547 SSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 547 ~~g~~~~A~~~~~~m~~~ 564 (703)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.32 E-value=5.8e-06 Score=70.07 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=67.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHH
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP-F-KTTKNMWAALLTACR 512 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~a~~ 512 (703)
++..+...+...|++++|.++|+.+.+. .+.+...+..+...+.+.|++++|...++++. . +.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444444455555555555555555441 12234455555555566666666666555431 1 234556667777777
Q ss_pred HcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 005305 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549 (703)
Q Consensus 513 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 549 (703)
..|++++|...++++++..|+++..+..+..++.+.|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 7777777777777777777877777777777766543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.8e-06 Score=72.31 Aligned_cols=100 Identities=8% Similarity=-0.000 Sum_probs=88.7
Q ss_pred CCCc-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 465 IKPR-AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 465 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 456777889999999999999999874 3344 678999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHhC
Q 005305 542 LNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 542 ~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.31 E-value=6.7e-06 Score=74.01 Aligned_cols=125 Identities=10% Similarity=-0.020 Sum_probs=84.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 005305 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRV 513 (703)
Q Consensus 436 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~ 513 (703)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. .. +.+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444444555556666666666555542 2234555666666666667777776666552 12 2345677778888888
Q ss_pred cCChhHHHHHHHHHhCCCCCCcchHHHH--HHHHHhCCChHHHHHHHHHHH
Q 005305 514 NGNLELGKFAAEKLYGMEPEKLSNYVVL--LNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.|++++|...+++++++.|++...+..+ +..+.+.|++++|.+.+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8899999999999998899887777444 444888899999999988764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.30 E-value=4.5e-05 Score=76.35 Aligned_cols=122 Identities=11% Similarity=0.085 Sum_probs=68.5
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCC-Cc----hHHHHHHHhhHHhcCCHHHHHHHhhhcCc------C----ChhhHHHH
Q 005305 340 RICTRLASLEHAKQAHAGLVRHGFG-LD----IVANSALVDFYSKWGRIEDARHVFDKMLC------K----NVISWNAL 404 (703)
Q Consensus 340 ~a~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~Li~~y~k~g~~~~A~~~f~~m~~------~----~~~~~~~l 404 (703)
..+...++++.|...+..+++.... .+ ..+++.+...|...|++++|...|++... . ...+|..+
T Consensus 123 ~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nl 202 (293)
T 3u3w_A 123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 3344444555555555555542111 11 22456666666666666666666665531 1 12356666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHHccC-CHHHHHHHHHHhHh
Q 005305 405 IAGYGNHGRGEEAVELFEQMLLN----GMRPN-HVTFLAVLSACSRSG-LSERGWEIFQSMSR 461 (703)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~ 461 (703)
...|...|++++|+..+++..+. +..+. ..++..+..++.+.| ..++|.+.++....
T Consensus 203 g~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77777777777777777766542 22222 356666777777777 35777777776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=6.7e-06 Score=70.35 Aligned_cols=116 Identities=8% Similarity=-0.091 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 511 (703)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 44445555555666666666666665542 2234555666666666666777666666552 1222 456677777778
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCh
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 551 (703)
...|++++|...++++++..|+++..+..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888887765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=8.2e-06 Score=70.18 Aligned_cols=115 Identities=7% Similarity=-0.057 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~ 511 (703)
..+..+...+...|++++|...|+...+ ..+.+...+..+...|...|++++|.+.+++. .. +.+...|..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3344444444444445555544444433 11223444455555555555555555555442 11 22455666667777
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
...|++++|...++++++.+|++...+..+..+|.+.|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 777777777777777777778777777777777776653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-06 Score=82.51 Aligned_cols=135 Identities=16% Similarity=0.021 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc--hHHHHHHHHHH
Q 005305 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR--AMHYACMIELL 479 (703)
Q Consensus 402 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 479 (703)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++++..|+...+ .. .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHH
Confidence 34556677778888888888777653 45554444445567778888888888875543 11 121 23566677778
Q ss_pred HhcCChHHHHHHHHhCCCC---CC--HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 480 GREGLLDEAFALIRGAPFK---TT--KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~m~~~---p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
.+.|++++|++.|++.... |. ...+.....++...|+.++|...+++++..+|+ ..++..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8888888888888764211 32 235666777778888888888888888888887 5555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.20 E-value=6.3e-06 Score=84.46 Aligned_cols=94 Identities=9% Similarity=-0.014 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
...|..+...|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++..++..+..+|.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 357778888888888999888888764 2333 67788899999999999999999999999999999999999999999
Q ss_pred hCCChHHH-HHHHHHHH
Q 005305 547 SSGKLKEA-AEVIRTLR 562 (703)
Q Consensus 547 ~~g~~~~A-~~~~~~m~ 562 (703)
+.|++++| .++++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44666654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.6e-06 Score=76.41 Aligned_cols=118 Identities=13% Similarity=0.126 Sum_probs=73.8
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHHcCCh--hHH
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFK-TTKNMWAALLTA-CRVNGNL--ELG 520 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a-~~~~g~~--~~a 520 (703)
.|++++|...++...+. .+.+...|..+...|...|++++|.+.|++. ... .+...|..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 44555555555555442 1234455555666666666666666666543 112 245566666666 5667776 777
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...++++++.+|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777888777788877788888888888888888888887776543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=8.5e-06 Score=69.81 Aligned_cols=96 Identities=10% Similarity=-0.048 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888763 2233 57788888899999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 005305 547 SSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 547 ~~g~~~~A~~~~~~m~~~ 564 (703)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988753
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.15 E-value=4e-05 Score=74.96 Aligned_cols=182 Identities=8% Similarity=-0.053 Sum_probs=134.4
Q ss_pred hcCCHHHHHHHhhhcCc---CChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCcCH---------------
Q 005305 379 KWGRIEDARHVFDKMLC---KNVISWNAL-------IAGYGNHGRGEEAVELFEQMLLNGMRPNH--------------- 433 (703)
Q Consensus 379 k~g~~~~A~~~f~~m~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 433 (703)
..++.+.|.+.|.+... .....|+.+ ...+...++..+++..++.-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888889999888853 345578777 4555555555555555554433 33322
Q ss_pred -------HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----H
Q 005305 434 -------VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK----N 502 (703)
Q Consensus 434 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 502 (703)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223455677889999999999988865 2355446666777889999999999999876544433 3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCC--CC-CcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGME--PE-KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
.+..+..++...|++++|+..+++...-. |. .+.....++.++.+.|+.++|..+++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67788889999999999999999998433 55 44578899999999999999999999998643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0001 Score=68.71 Aligned_cols=94 Identities=13% Similarity=-0.040 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc----h
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLN----GMRP--NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR----A 469 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 469 (703)
+++.+...|...|++++|+..|++..+. +-.| ....+..+...+...|++++|...++...+...-.++ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4444455555555555555555554431 1011 1133444445555555555555555554321100011 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 005305 470 MHYACMIELLGREGLLDEAFALIR 493 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~ 493 (703)
..+..+...+.+.|++++|.+.++
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHH
Confidence 223444555555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=66.71 Aligned_cols=99 Identities=13% Similarity=0.012 Sum_probs=80.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC--CcchHHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE--KLSNYVVLLN 543 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 543 (703)
+...+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|+ +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455666777788888888888888763 22 235677888888889999999999999999999999 8899999999
Q ss_pred HHHhC-CChHHHHHHHHHHHhCCC
Q 005305 544 IYNSS-GKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 544 ~y~~~-g~~~~A~~~~~~m~~~~~ 566 (703)
+|... |++++|.+.++...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.7e-05 Score=74.06 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=21.1
Q ss_pred CCCHHHHHH---HHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 279 CGSIEDAQG---VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 279 ~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
.|++++|.+ .+..-+......+..+...|...|++++|+..|++..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455555555 3333222223345555555555555555555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.2e-05 Score=75.30 Aligned_cols=94 Identities=15% Similarity=0.019 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcC-----HHHHHHHHHHHHccCCHHHHHHHHHHhHhhc---CCCC-ch
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLN-GMRPN-----HVTFLAVLSACSRSGLSERGWEIFQSMSRDH---KIKP-RA 469 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~ 469 (703)
+|+.+...|...|++++|+..|++..+. ...|+ ..++..+...|...|++++|..+++...+.. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4455555555555555555555554411 00111 1345555555555566666655555544311 0001 13
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHH
Q 005305 470 MHYACMIELLGREGLLDEA-FALIR 493 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A-~~~~~ 493 (703)
..|..+...|.+.|+.++| ...++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4555566666666666666 44343
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.001 Score=67.14 Aligned_cols=223 Identities=9% Similarity=-0.008 Sum_probs=157.0
Q ss_pred HHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 005305 98 CSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR-SIREVKRVFSYMLSTGFEPDLYMRNRVLLMH 175 (703)
Q Consensus 98 ~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y 175 (703)
|+.+.. ....+..++|+++++.+.... +-+..+|+.--..+...+ +++++.+.++.+++.. +.+..+|+.--..+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 444444 556667789999999999875 445566777666677777 5999999999999865 55667888777777
Q ss_pred HhC-C-ChHHHHHHHccCCCC---CcccHHHHHHHHHhCCChh--------HHHHHHHHhHHcCCCCChhhHHHHHHHHh
Q 005305 176 VRC-G-MMIDARRLFDEMPER---NLVSCNMIIAGMIDSGDYL--------EAFLLFLDLWEEFSDCGSRTFATMIRASA 242 (703)
Q Consensus 176 ~~~-g-~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 242 (703)
.+. + +.+++++.++.+.+. |-.+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 766 6 889999999998874 5556665544444545555 899999999887544 6667777777777
Q ss_pred cCCC-------hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCH--------------------HHHHHHHhhcCC-
Q 005305 243 GLEL-------ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI--------------------EDAQGVFDEMSE- 294 (703)
Q Consensus 243 ~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~--------------------~~A~~~f~~m~~- 294 (703)
+.+. ++++.+....++... +.|...|+-+-..+.+.|+. ....++..++..
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 7765 577778888877775 67888888888777777653 334444444432
Q ss_pred --------CCcccHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 295 --------KTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 295 --------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
++...+..+...|...|+.++|.++++.+.+
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 2334566677777777888888888877754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.11 E-value=9.3e-06 Score=73.36 Aligned_cols=96 Identities=14% Similarity=-0.024 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445566666677777777777777653 2233 55677777777777777777877777777777877777888888888
Q ss_pred hCCChHHHHHHHHHHHhC
Q 005305 547 SSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 547 ~~g~~~~A~~~~~~m~~~ 564 (703)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 888888888877777653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-06 Score=80.71 Aligned_cols=173 Identities=9% Similarity=-0.070 Sum_probs=102.3
Q ss_pred HHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccC
Q 005305 371 SALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447 (703)
Q Consensus 371 ~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 447 (703)
+..+......|++++|.+.|+.-.. .....|..+...+...|++++|+..|++..+. .|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------
Confidence 3444555566777888777765432 23456777777888888888888888888763 2221100000
Q ss_pred CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005305 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFK-TTKNMWAALLTACRVNGNLELGKFAAE 525 (703)
Q Consensus 448 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~ 525 (703)
..+.-. .. .....|..+...|.+.|++++|...+++. ... .+...|..+..++...|++++|...++
T Consensus 78 ~~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000 00 01345666777778888888888887763 223 356788888889999999999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHhCCChHHHH-HHHHHHHhC
Q 005305 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAA-EVIRTLRRK 564 (703)
Q Consensus 526 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~-~~~~~m~~~ 564 (703)
++++++|++...+..+..++...|+.+++. ..++.|-.+
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999888888777 555555433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.2e-05 Score=68.05 Aligned_cols=98 Identities=11% Similarity=-0.062 Sum_probs=82.5
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHH
Q 005305 467 PRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544 (703)
Q Consensus 467 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 544 (703)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++++|+++..|..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45667777888888888888888888763 2233 567888888889999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHhC
Q 005305 545 YNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 545 y~~~g~~~~A~~~~~~m~~~ 564 (703)
|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=8.8e-06 Score=69.37 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhC
Q 005305 471 HYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 548 (703)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|+.++|+..++++++++|+++..+..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999874 3344 6778888899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 005305 549 GKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 549 g~~~~A~~~~~~m~~~~ 565 (703)
|++++|.+.+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=6e-05 Score=62.84 Aligned_cols=107 Identities=11% Similarity=0.000 Sum_probs=57.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 005305 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRV 513 (703)
Q Consensus 436 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~ 513 (703)
+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444455555555555544431 1223444445555555555555555555442 1122 34556666666666
Q ss_pred cCChhHHHHHHHHHhCCCCCCcchHHHHHHH
Q 005305 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 544 (703)
.|++++|...++++++..|+++..+..+..+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 7777777777777777777766555555444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=7.9e-06 Score=72.53 Aligned_cols=102 Identities=10% Similarity=-0.052 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 511 (703)
..+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34444555566666666666666666542 2234555666666666667777776666653 2223 445666777777
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
...|++++|...+++++++.|+++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 77777788888888887777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.3e-05 Score=67.34 Aligned_cols=99 Identities=11% Similarity=0.034 Sum_probs=88.3
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHH
Q 005305 466 KPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543 (703)
Q Consensus 466 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 543 (703)
+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999874 3444 67789999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 005305 544 IYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 544 ~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+|.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.05 E-value=8.5e-05 Score=66.56 Aligned_cols=91 Identities=10% Similarity=0.022 Sum_probs=42.7
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 446 (703)
+..+...|...|++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. ..+..++..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 3344444445555555555554432 1234444445555555555555555555554431 11234444444445555
Q ss_pred CCHHHHHHHHHHhHh
Q 005305 447 GLSERGWEIFQSMSR 461 (703)
Q Consensus 447 g~~~~a~~~~~~m~~ 461 (703)
|++++|...|+.+.+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555555444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=3e-05 Score=64.77 Aligned_cols=98 Identities=11% Similarity=0.057 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4566778889999999999999999874 2233 6778899999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhCC
Q 005305 546 NSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 546 ~~~g~~~~A~~~~~~m~~~~ 565 (703)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0018 Score=65.35 Aligned_cols=171 Identities=14% Similarity=0.054 Sum_probs=102.4
Q ss_pred HHcCCcHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhc-C-CH
Q 005305 308 ALHGYSEEALDLYYEMRDSGVKMDHF-TFSMIIRICTRLA-SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW-G-RI 383 (703)
Q Consensus 308 ~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~-g-~~ 383 (703)
...+..++|++++.++... .|+.. .++.--..+...+ .++++...+..+++...+ +..+|+.-...+.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 3445556788888877765 34333 3444444444555 477777777777765433 556666655555554 5 67
Q ss_pred HHHHHHhhhcCcC---ChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCC----
Q 005305 384 EDARHVFDKMLCK---NVISWNALIAGYGNHGRGE--------EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL---- 448 (703)
Q Consensus 384 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 448 (703)
+++.++++.+... |..+|+--.-.+.+.|.++ ++++.++++++..+. |...|+.......+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 7788887777543 4456655444444444444 777777777775433 55666666666666554
Q ss_pred ---HHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCC
Q 005305 449 ---SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484 (703)
Q Consensus 449 ---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 484 (703)
++++.++++.+.. .-+-|...|+.+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 5666666666655 233455566666666665554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00012 Score=61.63 Aligned_cols=92 Identities=24% Similarity=0.303 Sum_probs=40.3
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 445 (703)
.+..+...|.+.|++++|.+.|+++. ..+...|..+...+...|++++|+..|+++.+.. ..+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 33444444444444444444444432 1233344444444444455555555554444421 1123344444444444
Q ss_pred cCCHHHHHHHHHHhHh
Q 005305 446 SGLSERGWEIFQSMSR 461 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~ 461 (703)
.|++++|...|+.+.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4444444444444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.5e-05 Score=67.61 Aligned_cols=96 Identities=11% Similarity=-0.013 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGA-PFKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 542 (703)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3455555666666666666666666652 33454 456666666667777777777777777777777666777777
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 005305 543 NIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 543 ~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777766654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.7e-05 Score=70.23 Aligned_cols=127 Identities=9% Similarity=0.051 Sum_probs=89.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH-HHhcCCh--
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL-LGREGLL-- 485 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~-- 485 (703)
...|++++|+..|++..+.. ..+...+..+...+...|++++|...|+.+.+. .+.+...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34567777877887777642 224467777777788888888888888877662 23355667777777 6678887
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchH
Q 005305 486 DEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 486 ~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
++|...+++. ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888764 2233 466788888888999999999999999999999875543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.1e-05 Score=84.69 Aligned_cols=116 Identities=9% Similarity=-0.038 Sum_probs=82.4
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELG 520 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 520 (703)
+.+.|++++|.+.|++..+. -+.+...|..+...|.+.|++++|++.+++. ...| +...|..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44556666666666666552 2233566667777777777777777777653 2233 566788888888999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHH--HHhCCChHHHHHHHHH
Q 005305 521 KFAAEKLYGMEPEKLSNYVVLLNI--YNSSGKLKEAAEVIRT 560 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~A~~~~~~ 560 (703)
...++++++++|++...+..+..+ +.+.|++++|.+.+++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999998889888888 8889999999998874
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.2e-05 Score=68.67 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=65.4
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li 172 (703)
+...|..+-. +.+.|++++|+..|+...... |.+...|..+-.++...|++++|...++.+++.. +.++..+..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 4445666666 778888888888888877764 4566677777777777777777777777777764 34455666666
Q ss_pred HHHHhCCChHHHHHHHccC
Q 005305 173 LMHVRCGMMIDARRLFDEM 191 (703)
Q Consensus 173 ~~y~~~g~~~~A~~~f~~m 191 (703)
.+|.+.|++++|+..|++.
T Consensus 112 ~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 6666666666666666554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.99 E-value=9.3e-05 Score=79.62 Aligned_cols=119 Identities=10% Similarity=-0.009 Sum_probs=72.8
Q ss_pred HHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHcc
Q 005305 371 SALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRS 446 (703)
Q Consensus 371 ~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~ 446 (703)
..+...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|++.|++..+. .| +..++..+..++...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 334556667777777777777663 234567777777777777777777777777764 34 345666667777777
Q ss_pred CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH--HHhcCChHHHHHHHH
Q 005305 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIEL--LGREGLLDEAFALIR 493 (703)
Q Consensus 447 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 493 (703)
|++++|.+.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777765321 223334444444 566677777777666
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.96 E-value=8e-05 Score=74.00 Aligned_cols=94 Identities=9% Similarity=-0.184 Sum_probs=67.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHH
Q 005305 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYA 308 (703)
Q Consensus 232 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~ 308 (703)
..+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++..+. +...|..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555666666666666666666654 446777788888888888888888888876652 4556777788888
Q ss_pred HcCCcHHHHHHHHHHHHC
Q 005305 309 LHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 309 ~~g~~~~A~~l~~~m~~~ 326 (703)
+.|++++|+..|++..+.
T Consensus 84 ~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.2e-05 Score=67.45 Aligned_cols=94 Identities=9% Similarity=-0.030 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc-------hHHH
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-------NYVV 540 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 540 (703)
..+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556777777888888888888763 3334 5667888888888889999999999988888876543 5777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 005305 541 LLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 541 l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.94 E-value=4e-05 Score=67.27 Aligned_cols=104 Identities=11% Similarity=-0.004 Sum_probs=63.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACR 512 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~ 512 (703)
.+..+...+.+.|++++|...|+...+. -+.+...|..+...|.+.|++++|...|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444445555666666666666665542 2234555566666666666666666666653 1222 4455666777777
Q ss_pred HcCChhHHHHHHHHHhCCCCCCcchHHH
Q 005305 513 VNGNLELGKFAAEKLYGMEPEKLSNYVV 540 (703)
Q Consensus 513 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 540 (703)
..|++++|...+++++++.|+++.....
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 7777777777777777777776655443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00013 Score=63.76 Aligned_cols=113 Identities=12% Similarity=-0.025 Sum_probs=62.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN----HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 472 (703)
+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++...+. .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------ 95 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---D------ 95 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---T------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---C------
Confidence 3445555555666666666666666665542 343 233334444444444444444444444331 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 473 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
+.+...|..+..++...|++++|...++++++++|++...+..+..+.
T Consensus 96 -------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 96 -------------------------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp -------------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred -------------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 123455666666666677777777777777777777666655555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00025 Score=60.23 Aligned_cols=91 Identities=16% Similarity=-0.019 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 480 (703)
|..+...+...|++++|+..|++..... ..+...+..+...+...|++++|...++...+. .+.+...+..+...|.
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHHH
Confidence 3333344444444444444444444321 112233334444444444444444444444331 1122334444444444
Q ss_pred hcCChHHHHHHHHh
Q 005305 481 REGLLDEAFALIRG 494 (703)
Q Consensus 481 ~~g~~~~A~~~~~~ 494 (703)
+.|++++|.+.+++
T Consensus 92 ~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 92 SLNKHVEAVAYYKK 105 (131)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 44444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.5e-05 Score=63.07 Aligned_cols=104 Identities=10% Similarity=-0.086 Sum_probs=51.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGN 516 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~ 516 (703)
....+.+.|++++|...|+...+. -+.+...|..+...|.+.|++++|.+.+++. ...| +...|..+..++...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 333444444444444444444431 1223344444555555555555555555442 1122 34455555566666666
Q ss_pred hhHHHHHHHHHhCCC------CCCcchHHHHHHH
Q 005305 517 LELGKFAAEKLYGME------PEKLSNYVVLLNI 544 (703)
Q Consensus 517 ~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 544 (703)
+++|...++++++++ |++...+..+..+
T Consensus 88 ~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 88 YASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 666666666666666 5555444444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.87 E-value=3.8e-05 Score=67.84 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCC-------CCCCcchH----HHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGM-------EPEKLSNY----VVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.|..+..++...|++++|...+++++++ +|++...| ...+.+|...|++++|.+.+++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777777788888888888888777777 99999999 9999999999999999999998864
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0001 Score=66.29 Aligned_cols=107 Identities=12% Similarity=-0.047 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 511 (703)
..+..+...+...|++++|...|+...+. .+.+...|..+...|.+.|++++|++.|++. ...| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44555556666666666666666666552 2234566667777777777777777777653 2233 466888888888
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHH
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 542 (703)
...|++++|...++++++++|++...|....
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999887654443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.7e-05 Score=66.34 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 501 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
...|..+..++...|++++|...++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888889999999999999999999999999999999999999999999999999988753
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0021 Score=64.55 Aligned_cols=131 Identities=9% Similarity=-0.002 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcC--CHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCC-HHHHHHHH
Q 005305 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG--RIEDARHVFDKML---CKNVISWNALIAGYGNHGR-GEEAVELF 421 (703)
Q Consensus 348 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~l~ 421 (703)
++.+..++..++.... .+..+|+.-.-.+.+.| .++++..+++.+. .+|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3455556666655432 25556655555555555 3677777777664 3455666666666666666 46777777
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhc
Q 005305 422 EQMLLNGMRPNHVTFLAVLSACSRS--------------GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482 (703)
Q Consensus 422 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 482 (703)
+++++..+. |...|+.......+. +.++++.+++..... --+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 777765333 445555444443333 335566666666554 2233445555444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0017 Score=65.20 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=130.5
Q ss_pred HHHHHHHhhhcC---cCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCC-HHHHHHHH
Q 005305 383 IEDARHVFDKML---CKNVISWNALIAGYGNHG--RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL-SERGWEIF 456 (703)
Q Consensus 383 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 456 (703)
++++..+++.+. .++..+|+.-...+...| .+++++.+++++.+...+ |...|+.-.....+.|. ++++.+++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777774 357778888777777777 489999999999986433 66778777777788887 68999999
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc------
Q 005305 457 QSMSRDHKIKPRAMHYACMIELLGRE--------------GLLDEAFALIRGA-PFKT-TKNMWAALLTACRVN------ 514 (703)
Q Consensus 457 ~~m~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~------ 514 (703)
+.+.+. -+.+...|+....++.+. +.++++++.+.+. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999873 345667777776666655 4578888888774 3334 677887665555544
Q ss_pred -----CChhHHHHHHHHHhCCCCCCcchHHHHHHHH---HhCCChHHHHHHHHHHHhC
Q 005305 515 -----GNLELGKFAAEKLYGMEPEKLSNYVVLLNIY---NSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 515 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y---~~~g~~~~A~~~~~~m~~~ 564 (703)
+.++++...++++++++|++.-.+..++... ...|..++....+.++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578899999999999999754443333322 2467788888888888753
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.2e-05 Score=64.88 Aligned_cols=91 Identities=16% Similarity=0.089 Sum_probs=64.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC---cchHHHHHHHH
Q 005305 474 CMIELLGREGLLDEAFALIRGA-PFKTT-K---NMWAALLTACRVNGNLELGKFAAEKLYGMEPEK---LSNYVVLLNIY 545 (703)
Q Consensus 474 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y 545 (703)
.+...+.+.|++++|.+.|++. ...|+ . ..|..+..++...|++++|...++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455566677777777777653 11222 2 356667777778888888888888888888877 66688888888
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 005305 546 NSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 546 ~~~g~~~~A~~~~~~m~~~ 564 (703)
...|++++|.+.+++..+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888877653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00022 Score=76.21 Aligned_cols=160 Identities=9% Similarity=-0.009 Sum_probs=107.9
Q ss_pred CCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 005305 381 GRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457 (703)
Q Consensus 381 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 457 (703)
+++++|...|+.... .+...|..+...|.+.|++++|+..|++.++. .|+...+ . -++..+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~--- 311 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA--- 311 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH---
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH---
Confidence 344455555544322 23456777777888888888888888887763 2322100 0 011110
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 458 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
... -....|..+...|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|++.
T Consensus 312 -~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 312 -SES-----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp -HHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred -HHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 000 11356777888888889999998888773 2233 577888999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCChHHHHH-HHHHHH
Q 005305 536 SNYVVLLNIYNSSGKLKEAAE-VIRTLR 562 (703)
Q Consensus 536 ~~~~~l~~~y~~~g~~~~A~~-~~~~m~ 562 (703)
.++..+..++.+.|++++|.+ .++.|-
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998874 445554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0001 Score=60.76 Aligned_cols=93 Identities=15% Similarity=0.008 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC--chHHHHHH
Q 005305 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP--RAMHYACM 475 (703)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l 475 (703)
...|..+...+...|++++|+..|++..+.. ..+...+..+..++...|++++|...|+...+. .+. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHH
Confidence 4455555555666666666666666655532 113344444455555555555555555555441 111 23344444
Q ss_pred HHHHHhc-CChHHHHHHHH
Q 005305 476 IELLGRE-GLLDEAFALIR 493 (703)
Q Consensus 476 i~~~~~~-g~~~~A~~~~~ 493 (703)
...|.+. |++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 4444444 44444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00023 Score=60.99 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=43.8
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--------HHHHH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH--------VTFLA 438 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ 438 (703)
+..|...|.+.|++++|...|++.. ..+...|+.+..+|...|++++|++.|++.++. .|+. .+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHHHHHHH
Confidence 3344555555555555555555442 223445555555555555555555555555442 1111 23334
Q ss_pred HHHHHHccCCHHHHHHHHHHhHh
Q 005305 439 VLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
+..++...|++++|.+.|+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=62.90 Aligned_cols=98 Identities=9% Similarity=-0.084 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 511 (703)
..+..+...+...|++++|...|+...+. .+.+...|..+...|...|++++|...+++. ...| +...|..+..++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 33444444444444444444444444331 1222344444445555555555555544432 1112 344555555566
Q ss_pred HHcCChhHHHHHHHHHhCCCCC
Q 005305 512 RVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
...|++++|...+++++++.|+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 6666666666666666655554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.9e-05 Score=66.67 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=60.7
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005305 482 EGLLDEAFALIRGA-PF---KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556 (703)
Q Consensus 482 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 556 (703)
.|++++|+..|++. .. .| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.+.|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46677777777663 22 13 344677777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhC
Q 005305 557 VIRTLRRK 564 (703)
Q Consensus 557 ~~~~m~~~ 564 (703)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.73 E-value=9e-05 Score=63.10 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC-------cchHHH
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-------LSNYVV 540 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 540 (703)
..+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...+++++...|++ +..|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45566667777777777777777653 11 2356677777777888888888888888888777665 678899
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhC
Q 005305 541 LLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 541 l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
++.+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988753
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00095 Score=70.52 Aligned_cols=122 Identities=12% Similarity=0.020 Sum_probs=79.1
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcCH-HHHHH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPNH-VTFLA 438 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ 438 (703)
+...+...|+.+.|..++..... .+ ..++..+...|...|++++|..++++.... +-+|.. .++..
T Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
T 4b4t_Q 101 IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLL 180 (434)
T ss_dssp HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 33444455666666666655421 11 235667778888888888888888877652 112222 46777
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcC-C--CCc--hHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHK-I--KPR--AMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~-~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
+...|...|++++|..+++....... + +|. ...+..+...+...|++++|...|.+
T Consensus 181 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 181 ESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 77888889999999988887654211 1 111 34566777777888999998777654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00011 Score=68.58 Aligned_cols=144 Identities=10% Similarity=-0.105 Sum_probs=87.2
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CCh----------------hhH
Q 005305 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNV----------------ISW 401 (703)
Q Consensus 341 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~----------------~~~ 401 (703)
.....+.++.+.+.+....... ......+..+...|.+.|++++|...|++... .+. ..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3444566666666555332211 11345677788899999999999999998742 222 566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 005305 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480 (703)
Q Consensus 402 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 480 (703)
..+...|...|++++|+..+++..+. .| +...+..+..++...|++++|...|+...+. .+.+...+..+..++.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHH
Confidence 77777777778888888877777764 33 4466666667777777777777777777652 1234455556666665
Q ss_pred hcCChHHHH
Q 005305 481 REGLLDEAF 489 (703)
Q Consensus 481 ~~g~~~~A~ 489 (703)
+.|+.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00021 Score=73.01 Aligned_cols=137 Identities=10% Similarity=0.021 Sum_probs=70.6
Q ss_pred CChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCC--------------hhhHHHHHHHH
Q 005305 179 GMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG--------------SRTFATMIRAS 241 (703)
Q Consensus 179 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~a~ 241 (703)
+++++|...|+...+ .+...|..+...|.+.|++++|+..|++......... ...+..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544332 2355677788888888888888888888776532211 23444444444
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHH
Q 005305 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEA 316 (703)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 316 (703)
...|++++|...+..+++.. +.+...+..+..+|...|++++|...|++..+ .+...|..+...+.+.|+.++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443 33344444444444444444444444444321 1233344444444444444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00011 Score=62.63 Aligned_cols=62 Identities=8% Similarity=-0.024 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
..|..+...+...|++++|+..|++..+.. ..+...+..+...+...|++++|..+++.+.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 345555666666666666666666666542 12344555555555566666666666655544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0074 Score=63.51 Aligned_cols=162 Identities=9% Similarity=-0.059 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHC-CCCCCHhh---HHHHHH-HHhccCCHHHHHHHHHHHHH----cCCCC-chHH
Q 005305 300 WNTIIAGYALHGYSEEALDLYYEMRDS-GVKMDHFT---FSMIIR-ICTRLASLEHAKQAHAGLVR----HGFGL-DIVA 369 (703)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t---~~~ll~-a~~~~~~~~~a~~~~~~~~~----~g~~~-~~~~ 369 (703)
+..+...|...|++++|.+.+.++... +..++..+ ....+. .+...|+.+.+..++..... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666677777777777776665431 11112111 112222 23345667777777766654 12222 2346
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcCc--------C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-Cc-C--HH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKMLC--------K-NVISWNALIAGYGNHGRGEEAVELFEQMLLN--GM-RP-N--HV 434 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~~--------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~-~p-~--~~ 434 (703)
+..|...|...|++++|..++++... + .+..|..++..|...|++++|..++++.... .+ .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 66777888888888888877776521 1 2346777778888888888888888776542 11 12 1 13
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
.+..+...+...|++++|...|....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555666777888888777766543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00012 Score=64.89 Aligned_cols=137 Identities=15% Similarity=0.001 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cCH----HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMR-PNH----VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 473 (703)
.++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|..+++...+...-.++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--- 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--- 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH---
Confidence 35666667777777777777777776652111 111 2445555556666666666666665543110001100
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCC------CCCcchHHHHHHHHHh
Q 005305 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME------PEKLSNYVVLLNIYNS 547 (703)
Q Consensus 474 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~ 547 (703)
....++..+...+...|++++|...+++.+++. +.....+..++.+|..
T Consensus 87 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 87 -------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 002233444444455555555555555444321 1123567788899999
Q ss_pred CCChHHHHHHHHHHHh
Q 005305 548 SGKLKEAAEVIRTLRR 563 (703)
Q Consensus 548 ~g~~~~A~~~~~~m~~ 563 (703)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999998887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00049 Score=58.57 Aligned_cols=66 Identities=12% Similarity=-0.105 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 472 YACMIELLGREGLLDEAFALIRGA-PFKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
+..+...|.+.|++++|.+.+++. ...|+ ...+..+..++...|++++|...+++++...|+++..
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 333444444444444444444432 11121 2344455555556666666666666666666665443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00053 Score=60.59 Aligned_cols=126 Identities=17% Similarity=0.057 Sum_probs=74.0
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcC-H
Q 005305 368 VANSALVDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPN-H 433 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 433 (703)
.++..+...|...|++++|...|++... .+ ..++..+...|...|++++|+..|++..+. +-.+. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3455666667777777777777766532 11 136677777888888888888888876652 11111 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhc---CCCC-chHHHHHHHHHHHhcCChHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDH---KIKP-RAMHYACMIELLGREGLLDEAFALIR 493 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 493 (703)
..+..+...+...|++++|...++...+.. +..+ ....+..+...|...|++++|.+.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 455566667777778888777777665421 1000 12334445555555555555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00035 Score=59.20 Aligned_cols=91 Identities=10% Similarity=-0.008 Sum_probs=43.6
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 519 (703)
.+.+.|++++|...|+...+. -+.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++...|+.++
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344444445554444444431 1223444444555555555555555555442 2223 34455556666666666666
Q ss_pred HHHHHHHHhCCCCCC
Q 005305 520 GKFAAEKLYGMEPEK 534 (703)
Q Consensus 520 a~~~~~~~~~~~p~~ 534 (703)
|...++++++.+|++
T Consensus 104 A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 104 ALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHhCcCC
Confidence 666666666666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00024 Score=73.51 Aligned_cols=138 Identities=9% Similarity=-0.037 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
...|..+...|.+.|++++|+..|++.++. .|+.. .....+++ .+ .-+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~-------~~--~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG-------AK--LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH-------GG--GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH-------HH--HHHHHHHHHHHHHH
Confidence 345777778888888888888888887752 11110 00011111 10 01123567788888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHH
Q 005305 478 LLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 555 (703)
.|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998873 4445 56788889999999999999999999999999999999999999999988888876
Q ss_pred H
Q 005305 556 E 556 (703)
Q Consensus 556 ~ 556 (703)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00015 Score=74.07 Aligned_cols=148 Identities=10% Similarity=-0.050 Sum_probs=82.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
...|..+...+.+.|++++|+..|++.+.. .|+... +...|..+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 446777777888899999999999998873 565442 22334444433222 1 136778888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH-HhCCChHHH
Q 005305 478 LLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY-NSSGKLKEA 554 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~~A 554 (703)
.|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++...+..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998874 3334 5678888999999999999999999999999999988888888874 455677788
Q ss_pred HHHHHHHHhCC
Q 005305 555 AEVIRTLRRKG 565 (703)
Q Consensus 555 ~~~~~~m~~~~ 565 (703)
.+++++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888776543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00015 Score=64.02 Aligned_cols=71 Identities=17% Similarity=0.065 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHh--------CCCCCCH-HHH----HHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 471 HYACMIELLGREGLLDEAFALIRG--------APFKTTK-NMW----AALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~--------m~~~p~~-~~~----~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
.|..+..++.+.|++++|+..+++ ....|+. ..| .....++...|++++|...++++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 455555555555555555555443 2336764 478 889999999999999999999999999998765
Q ss_pred HHHH
Q 005305 538 YVVL 541 (703)
Q Consensus 538 ~~~l 541 (703)
+.-+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00029 Score=72.02 Aligned_cols=152 Identities=9% Similarity=-0.020 Sum_probs=80.2
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 446 (703)
...+..+...|.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888899999999999999998753222111 1223333444433221 13667777888889
Q ss_pred CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHHcCChhHHHHH
Q 005305 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTK-NMWAALLTA-CRVNGNLELGKFA 523 (703)
Q Consensus 447 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a-~~~~g~~~~a~~~ 523 (703)
|++++|...++...+. -+.+...|..+..+|...|++++|.+.|++. ...|+. ..+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888772 2346778888889999999999999999875 445543 344444444 2455677788889
Q ss_pred HHHHhCCCCCCc
Q 005305 524 AEKLYGMEPEKL 535 (703)
Q Consensus 524 ~~~~~~~~p~~~ 535 (703)
++++++..|+++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999998888764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00032 Score=57.06 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+...|..+...+...|++++|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999999999999999999999999999999998764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0029 Score=69.25 Aligned_cols=169 Identities=10% Similarity=-0.020 Sum_probs=126.6
Q ss_pred CHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccC-
Q 005305 382 RIEDARHVFDKMLC---KNVISWNALIAGYGNHGR----------GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG- 447 (703)
Q Consensus 382 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g- 447 (703)
.-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+...+ +..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34566777777643 344567665555555555 88889999888875333 5577777777788888
Q ss_pred -CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---------
Q 005305 448 -LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG-LLDEAFALIRGA-PFKT-TKNMWAALLTACRVN--------- 514 (703)
Q Consensus 448 -~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~--------- 514 (703)
+++++.+.++.+.+. -+.+...|+.-.-++.+.| ..+++++.++++ ...| |...|......+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 678999999888873 3445667777777777888 888899888875 3344 667888777776653
Q ss_pred -----CChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHH
Q 005305 515 -----GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553 (703)
Q Consensus 515 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 553 (703)
+.++++...+.+++.++|++..+|.-+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 456889999999999999999999999999999998655
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00028 Score=58.18 Aligned_cols=93 Identities=10% Similarity=-0.066 Sum_probs=73.6
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC------cchH
Q 005305 467 PRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK------LSNY 538 (703)
Q Consensus 467 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 538 (703)
++...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|++ ...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34566777888888888999888888763 2233 67788888889999999999999999999999998 6677
Q ss_pred HHHHHHHHhCCChHHHHHHHH
Q 005305 539 VVLLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 539 ~~l~~~y~~~g~~~~A~~~~~ 559 (703)
..++.++...|++++|.+.++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 788888888887777665443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00012 Score=61.51 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 471 HYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
.+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|...++++++..|+++.
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 3444444444555555555544442 1122 3444555555555666666666666666655565543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.001 Score=68.71 Aligned_cols=113 Identities=4% Similarity=-0.062 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 005305 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT-TKNMWAALLTAC 511 (703)
Q Consensus 433 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~a~ 511 (703)
...+..+...+.+.|++++|...|+...+.. +.. ...-..+++.+ ..| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 3456666777778888888888887776510 100 00011111111 122 456888899999
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
...|++++|...++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00058 Score=73.04 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhC-----CCCCC
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGA---------PFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYG-----MEPEK 534 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~ 534 (703)
.+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+..++++++ +.|+.
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555555555555555432 112332 2556666666666666666666666552 34554
Q ss_pred c---chHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 535 L---SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 535 ~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
+ .....|..++...|++++|+.++++++++..
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 4456788889999999999999999987543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00043 Score=61.97 Aligned_cols=76 Identities=14% Similarity=-0.045 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc-chHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL-SNYVVLLNI 544 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 544 (703)
...|..+...|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456777778888888888888887763 2334 566888888889999999999999999999999876 334344333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00079 Score=53.05 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666677777777777777777653 2223 56677778888888888888888888888888888888888888876
Q ss_pred hCC
Q 005305 547 SSG 549 (703)
Q Consensus 547 ~~g 549 (703)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00055 Score=57.15 Aligned_cols=77 Identities=8% Similarity=-0.026 Sum_probs=64.4
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 487 EAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 487 ~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555542 3334 5678888888999999999999999999999999999999999999999999999999998765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0015 Score=52.11 Aligned_cols=69 Identities=17% Similarity=0.024 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 498 KTTKNMWAALLTACRVNGN---LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 498 ~p~~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
++|+..|..+..++...++ .++|...++++++++|+++.+...++..+.+.|++++|.+.++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467778888888765555 79999999999999999999999999999999999999999999987654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0029 Score=67.54 Aligned_cols=120 Identities=13% Similarity=-0.017 Sum_probs=80.5
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-C---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC--K-N---------------VISWNALIAGYGNHGRGEEAVELFEQMLLN 427 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (703)
....+..+...|.+.|++++|...|++... | + ...|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456788889999999999999999998742 2 2 356666777777777777777777777764
Q ss_pred CCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 005305 428 GMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 428 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (703)
.| +...+..+..++...|++++|...|+.+.+. -+.+...+..+..++.+.|+.++|.
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3456666666777777777777777766541 1223445556666666666666554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0002 Score=63.12 Aligned_cols=85 Identities=11% Similarity=0.007 Sum_probs=61.9
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhC
Q 005305 481 REGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGN----------LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548 (703)
Q Consensus 481 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 548 (703)
|.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344555555555542 2223 44455555555554443 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhCC
Q 005305 549 G-----------KLKEAAEVIRTLRRKG 565 (703)
Q Consensus 549 g-----------~~~~A~~~~~~m~~~~ 565 (703)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0014 Score=53.80 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+...|..+...+...|++++|...+++++++.|+++..|..++.+|.+.|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788889999999999999999999999999999999999999999999999999999988643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0015 Score=69.78 Aligned_cols=113 Identities=14% Similarity=0.033 Sum_probs=82.7
Q ss_pred HHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhC-----CCCCC---cchHHH
Q 005305 479 LGREGLLDEAFALIRGA---------PFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYG-----MEPEK---LSNYVV 540 (703)
Q Consensus 479 ~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~ 540 (703)
+...|++++|+.++++. +..|+. .+++.|..+|...|++++|+..++++++ +.|++ ..+|+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45678888888777652 113333 4789999999999999999999888763 34544 456889
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHH
Q 005305 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609 (703)
Q Consensus 541 l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 609 (703)
|+.+|..+|++++|..++++..+--.. .- ...||...++..++.+...+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~l-G~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLV-----------------TH-GPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HT-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------Hh-CCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987642111 01 2369998888877777666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0069 Score=52.43 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=50.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh---
Q 005305 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV----NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS--- 547 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--- 547 (703)
|..+|...+.+++|.+.|++.-...++..+..|...|.. .++.++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333333334444444444432222344444444444444 45566666666666544 345677777777777
Q ss_pred -CCChHHHHHHHHHHHhCCC
Q 005305 548 -SGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 548 -~g~~~~A~~~~~~m~~~~~ 566 (703)
.+++++|.+++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 7778888888777776653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0018 Score=68.16 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhC-----CC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeE
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYG-----ME---PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 574 (703)
+++.|..+|...|++++|+..++++++ +. |+-...|..|+.+|..+|++++|..++++..+--..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------- 403 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------- 403 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------
Confidence 455555566666666666665555542 22 333456889999999999999999999987642110
Q ss_pred EEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHH
Q 005305 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609 (703)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 609 (703)
.-...||...+++..+.+...+|+
T Consensus 404 -----------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 404 -----------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp -----------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred -----------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 112369999999888888888776
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.022 Score=62.24 Aligned_cols=150 Identities=12% Similarity=0.010 Sum_probs=119.8
Q ss_pred hcC-CHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCC----------HHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 410 NHG-RGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGL----------SERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 410 ~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
+.| ..++|++.++++.+. .|+. ..|+.--.++.+.|+ ++++...++.+.+. -+.+...|+.-.-
T Consensus 40 ~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344 467899999999984 6655 556655555666666 89999999999873 3456677877778
Q ss_pred HHHhcC--ChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhC----
Q 005305 478 LLGREG--LLDEAFALIRGAP-F-KTTKNMWAALLTACRVNG-NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS---- 548 (703)
Q Consensus 478 ~~~~~g--~~~~A~~~~~~m~-~-~p~~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~---- 548 (703)
++.+.| ++++|++.++++- . +.|...|+.-.......| ..+++...++++++.+|+|..+|.....++.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 888899 7799999999862 2 347789998888888888 899999999999999999999999999998874
Q ss_pred ----------CChHHHHHHHHHHHh
Q 005305 549 ----------GKLKEAAEVIRTLRR 563 (703)
Q Consensus 549 ----------g~~~~A~~~~~~m~~ 563 (703)
++++++.+.+++...
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHh
Confidence 567889888877764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0032 Score=49.37 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 501 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888889999999999999999999999999999999999999999999999999998754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.033 Score=48.05 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=54.5
Q ss_pred CcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh----cCCHHHHH
Q 005305 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK----WGRIEDAR 387 (703)
Q Consensus 312 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~ 387 (703)
++++|++.|++..+.| .|+.. +-..+......+.|...+....+.| +......|..+|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666555 22222 3333444445555666666555543 34445555555554 45555555
Q ss_pred HHhhhcC-cCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 005305 388 HVFDKML-CKNVISWNALIAGYGN----HGRGEEAVELFEQMLLNG 428 (703)
Q Consensus 388 ~~f~~m~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 428 (703)
+.|++.. ..+..++..|...|.. .++.++|+..|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555442 2344444444444444 445555555555554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=58.16 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=54.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCH----------HHHHHHHHHhHhhcCCCC-chHHHHHHH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLS----------ERGWEIFQSMSRDHKIKP-RAMHYACMI 476 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~----------~~a~~~~~~m~~~~~~~p-~~~~~~~li 476 (703)
.+.+++++|++.+++..+. .| +...|..+..++...+.+ ++|+..|++..+ +.| ....|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 3445566666666666653 33 335555555555555443 244444444443 122 233444444
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
.+|...|.+ .|+.. ...|++++|...++++++++|++.
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH
Confidence 444433322 12211 012589999999999999999974
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.029 Score=56.55 Aligned_cols=144 Identities=17% Similarity=0.117 Sum_probs=79.7
Q ss_pred CcCChhhHHHHHHHHHh--cCC---HHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC
Q 005305 394 LCKNVISWNALIAGYGN--HGR---GEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467 (703)
Q Consensus 394 ~~~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 467 (703)
+..+...|...+.+... .+. ..+|+.+|++.++. .|+. ..+..+..++.. . . . .+- .
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~----------~--~-~-~~~-~ 252 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIV----------R--H-S-QHP-L 252 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH----------H--H-H-HSC-C
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH----------H--h-c-cCC-C
Confidence 34577788877765442 333 57899999999884 6764 444443333330 0 0 0 110 0
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGAPF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
+..... .+..|.+-...+.. +.++.+|.++...+...|++++|...+++++.++|+ ...|..++.++.
T Consensus 253 ~~~~~~----------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~ 321 (372)
T 3ly7_A 253 DEKQLA----------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE 321 (372)
T ss_dssp CHHHHH----------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred chhhHH----------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 111000 01222222222222 335556666665566667777777777777777664 556667777777
Q ss_pred hCCChHHHHHHHHHHHhCC
Q 005305 547 SSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 547 ~~g~~~~A~~~~~~m~~~~ 565 (703)
-.|++++|.+.+++....+
T Consensus 322 ~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 322 MKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHHhcC
Confidence 7777777777776665543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0099 Score=47.96 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
..|..+...|...|++++|+..|++.++. .|+ ...|..+..++...|++++|.+.|+...
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444455555555555544442 222 2344444444444555555544444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.4 Score=40.03 Aligned_cols=140 Identities=10% Similarity=0.046 Sum_probs=99.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+-+.+ ..||++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3457777777777777653 24445555555444455555555555555442221 346777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 005305 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567 (703)
Q Consensus 489 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 567 (703)
..-+-.+.. +.......++.....|.-++-..+...++.-+|.+++...-++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 766666642 44556677888899999999999999987767667899999999999999999999999999999985
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0038 Score=64.19 Aligned_cols=395 Identities=11% Similarity=0.071 Sum_probs=237.2
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDAL 136 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 136 (703)
...+|+.|-.++.+.+.+.+| ...|-+.. |...|..+|. ..+.|.+++-+..+...++.. -+...=+.|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eA---IdsyIkA~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEA---IDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTT---TTSSCCCS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHH
T ss_pred CccHHHHHHHHHHccCchHHH---HHHHHhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHH
Confidence 557888888888888888888 66665533 7777899999 999999999998887666543 344555678
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC-----------------------
Q 005305 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE----------------------- 193 (703)
Q Consensus 137 l~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----------------------- 193 (703)
+-+|++.+++.+-++... .|+..-...+-+-+...|.++.|.-+|..+..
T Consensus 123 i~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999888765443332 45655556667777778888888888777652
Q ss_pred -CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHH
Q 005305 194 -RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL 272 (703)
Q Consensus 194 -~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 272 (703)
.++.||-.+-.+|...+++.-|.-.--.+.- .| .-+..++.-|-..|.+++-..+++..+... ....-+++.|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 4778899999999999888766544333321 11 223345566777888888877777655221 3567789999
Q ss_pred HHHHHhCCCHHHHHHHHhhcCC----C-------CcccHHHHHHHHHHcCCcHHHHHHH-------------HHHHHCCC
Q 005305 273 IDMYSKCGSIEDAQGVFDEMSE----K-------TTVGWNTIIAGYALHGYSEEALDLY-------------YEMRDSGV 328 (703)
Q Consensus 273 i~~y~~~g~~~~A~~~f~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~~l~-------------~~m~~~g~ 328 (703)
.-.|+|-. .++-.+-++..-. | ....|.-++-.|.+..+++.|.... .+....
T Consensus 270 aILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K-- 346 (624)
T 3lvg_A 270 AILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK-- 346 (624)
T ss_dssp HHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--
T ss_pred HHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--
Confidence 99999863 3333333332211 2 4457999999999988888775321 111110
Q ss_pred CCCHhh---------------HHHHHHHHhccCCHHHHHHHHHHHHH----------cCCCCchHHHHHHHhhHHhcCCH
Q 005305 329 KMDHFT---------------FSMIIRICTRLASLEHAKQAHAGLVR----------HGFGLDIVANSALVDFYSKWGRI 383 (703)
Q Consensus 329 ~pd~~t---------------~~~ll~a~~~~~~~~~a~~~~~~~~~----------~g~~~~~~~~~~Li~~y~k~g~~ 383 (703)
.+|... ++-+|.++...=+..++.+++...-. ---..+..+-.++-+.|....++
T Consensus 347 VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy 426 (624)
T 3lvg_A 347 VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDY 426 (624)
T ss_dssp CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhH
Confidence 112222 23344444333333333333332110 00112345666777777777776
Q ss_pred HHHHHHhhhcCc------------CChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHH
Q 005305 384 EDARHVFDKMLC------------KNVISWNAL-IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450 (703)
Q Consensus 384 ~~A~~~f~~m~~------------~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 450 (703)
+.-+...+.-.. .+..-+..+ ...|.+++++.+++.+.++ .+.-.| .+...+.+|+.+
T Consensus 427 ~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---DklykD------AietAa~S~~~e 497 (624)
T 3lvg_A 427 QALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSLYKD------AMQYASESKDTE 497 (624)
T ss_dssp HHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCCTTG------GGTTTTTCCCTT
T ss_pred HHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---cccHHH------HHHHHHHcCCHH
Confidence 655444333221 222222222 3356667777777665432 122222 234456677777
Q ss_pred HHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 005305 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491 (703)
Q Consensus 451 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 491 (703)
-+.++++...+. -+.+.|.+++-.+-..=+++-++++
T Consensus 498 laeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 498 LAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 777777777652 2344555555555555566777666
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0068 Score=63.61 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHh-------C-CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLY-------G-MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~-------~-~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+++.|..+|...|++++|+..+++++ + -.|+-...|+.|+.+|..+|++++|..++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34444444444444444444444443 2 2244455688999999999999999999998764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.021 Score=47.13 Aligned_cols=75 Identities=11% Similarity=-0.067 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHc
Q 005305 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189 (703)
Q Consensus 112 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 189 (703)
+|+..|++..+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+...|.+.|++++|+..|+
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555555443 3344555555555555666666666666555543 2233344444444444455555444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.01 Score=47.49 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHcCChhHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 511 CRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 511 ~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+...|++++|...++++++.+|+++. .|..++.+|...|++++|.+.+++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555555555 555555555555555555555555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.11 Score=59.59 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=83.9
Q ss_pred hcCCHHHHHH-HhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 005305 379 KWGRIEDARH-VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457 (703)
Q Consensus 379 k~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 457 (703)
..+++++|.+ ++..++.++ ....++..+...|..++|+++.+. |+. - .......|++++|.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~~~--~~~~~~~~l~~~~~~~~a~~~~~~-------~~~-~----f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGKD--SLTKIARFLEGQEYYEEALNISPD-------QDQ-K----FELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCHH--HHHHHHHHHHHTTCHHHHHHHCCC-------HHH-H----HHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCCchH--HHHHHHHHHHhCCChHHheecCCC-------cch-h----eehhhhcCCHHHHHHHHH
Confidence 4577777777 554433011 126666667777777777765532 111 1 223345677787777643
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF----------KTTKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 458 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
.+ .+...|..+.+++.+.|+++.|++.|.++.. ..+...+..+.......|+.+.|..++.+.
T Consensus 677 ~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~ 749 (814)
T 3mkq_A 677 DE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA 749 (814)
T ss_dssp TC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc
Confidence 22 4556778888888888888888888877641 112222223333344444444444443332
Q ss_pred hCCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 559 (703)
.-+...+++|.+.|+|++|..+-+
T Consensus 750 --------g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 750 --------GDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp --------TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHcCChHHHHHHHH
Confidence 223445566666666666666544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0033 Score=64.65 Aligned_cols=237 Identities=13% Similarity=0.099 Sum_probs=143.9
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcC
Q 005305 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244 (703)
Q Consensus 165 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 244 (703)
+.+|+.|..++.+.|++.+|+.-| +...|+..|..+|....+.|.+++-+..+...++..- ++..=+.|+-++++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 445666666666666666666555 3335556666677766667776666666554443322 233334566666666
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC------------------------CCcccH
Q 005305 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE------------------------KTTVGW 300 (703)
Q Consensus 245 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~------------------------~~~~~~ 300 (703)
+++.+-++++. .|+..-...+.+-+...|.++.|.-+|..+.. .++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 66554433321 34444445556666666777766666665542 367789
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhc
Q 005305 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380 (703)
Q Consensus 301 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 380 (703)
-.+-.+|...+.+.-|.-.--.+.- .||. ...++.-|-..|.+++-..+++..+.. -......++-|.-.|+|-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 9999999999988777554433332 2221 234556677788888877777766532 124677888888889885
Q ss_pred C--CHHHHHHHhh-hcCc-------CChhhHHHHHHHHHhcCCHHHHH
Q 005305 381 G--RIEDARHVFD-KMLC-------KNVISWNALIAGYGNHGRGEEAV 418 (703)
Q Consensus 381 g--~~~~A~~~f~-~m~~-------~~~~~~~~li~~~~~~g~~~~A~ 418 (703)
. ++-+=.++|- ++.- .....|.-++-.|.+..+++.|.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 2 2222223332 2211 24557888888898888888775
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.19 Score=57.54 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=101.3
Q ss_pred HHhcCChhHHHH-HHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChH
Q 005305 104 LVLNKRYREALE-LFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182 (703)
Q Consensus 104 ~~~~g~~~~A~~-l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 182 (703)
....+++++|.+ ++.. ++ +......++..+...|..+.|.++.+. . ..-...+..+|+++
T Consensus 609 ~~~~~~~~~a~~~~l~~------i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN------VE-GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGG------CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHhc------CC-chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHH
Confidence 667888998877 5422 12 122336777778888888888765531 1 12245567889999
Q ss_pred HHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 005305 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262 (703)
Q Consensus 183 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 262 (703)
+|.++.+.+. +...|..+...+.+.|+++.|.+.|..+.. |..+...+...++.+...++-+.+...|.
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 9999998774 567899999999999999999999998742 33444444446666665555555554441
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 005305 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 292 (703)
++.-..+|.+.|++++|.+++.++
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 223334455566666666665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.057 Score=56.57 Aligned_cols=59 Identities=14% Similarity=-0.013 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGA---------PFKTTK-NMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
.+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+..+++++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34445555555555555555554432 112332 245566666666666666666665554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.038 Score=43.93 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=49.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchH
Q 005305 475 MIELLGREGLLDEAFALIRGA-PFKT-TKN-MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345667788888888888764 2234 456 788888888889999999999999999999887665
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.034 Score=48.23 Aligned_cols=65 Identities=14% Similarity=0.027 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHcC---ChhHHHHHHHHHhCCC-C-CCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 499 TTKNMWAALLTACRVNG---NLELGKFAAEKLYGME-P-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 499 p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
++..+.-.+..++.+.+ +.++|...++.+++.+ | ++...+..|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 46666666677777766 5568888888888777 6 4467788888888899999999998888875
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.086 Score=55.25 Aligned_cols=67 Identities=12% Similarity=0.000 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhC-----CCCCCc
Q 005305 471 HYACMIELLGREGLLDEAFALIRGA---------PFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYG-----MEPEKL 535 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~ 535 (703)
+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+..++++++ +.|+++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444444455555555554444432 112222 2455555566666666666665555542 356554
Q ss_pred ch
Q 005305 536 SN 537 (703)
Q Consensus 536 ~~ 537 (703)
.+
T Consensus 411 ~~ 412 (429)
T 3qwp_A 411 LI 412 (429)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.14 Score=51.73 Aligned_cols=38 Identities=16% Similarity=-0.077 Sum_probs=33.9
Q ss_pred hCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...+|.++.+|..+...+...|++++|...++++...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 35678889999999998888899999999999998876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.051 Score=52.56 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=68.8
Q ss_pred hHHHHHHHHh-CCCCCC---HHHHHHHHHHHHH-----cCChhHHHHHHHHHhCCCCCC-cchHHHHHHHHHhC-CChHH
Q 005305 485 LDEAFALIRG-APFKTT---KNMWAALLTACRV-----NGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSS-GKLKE 553 (703)
Q Consensus 485 ~~~A~~~~~~-m~~~p~---~~~~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~ 553 (703)
..+|...+++ +...|+ ...|..|...|.. -|+.++|++.+++++++.|+. +.+++..++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3455555555 344565 5578888888887 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 005305 554 AAEVIRTLRRKGLRMLPA 571 (703)
Q Consensus 554 A~~~~~~m~~~~~~~~~~ 571 (703)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998766543343
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.67 Score=41.18 Aligned_cols=129 Identities=13% Similarity=0.134 Sum_probs=80.1
Q ss_pred hhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 005305 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454 (703)
Q Consensus 375 ~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 454 (703)
+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..++-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888887665 4567888888888888888888888877643 3344444555676665554
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 455 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
+-+.... .| -++.....+.-.|+++++.+++.+...-|... ...+.+|..+.|.++.+.+
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 4433332 12 23344445566788888888887765432221 1223466666676665544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.24 Score=39.10 Aligned_cols=77 Identities=12% Similarity=0.012 Sum_probs=55.9
Q ss_pred CCchHHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHH
Q 005305 466 KPRAMHYACMIELLGREGL---LDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540 (703)
Q Consensus 466 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 540 (703)
++++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...++++++.+|++ .....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHH
Confidence 4566777777777765544 68888888773 3445 45677777888899999999999999999999883 33444
Q ss_pred HHH
Q 005305 541 LLN 543 (703)
Q Consensus 541 l~~ 543 (703)
+..
T Consensus 82 i~~ 84 (93)
T 3bee_A 82 IIE 84 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.11 E-value=1.4 Score=39.05 Aligned_cols=130 Identities=10% Similarity=0.037 Sum_probs=81.7
Q ss_pred HHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHH
Q 005305 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251 (703)
Q Consensus 172 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 251 (703)
.+....+|+++.|.++.+++ .+...|..|.......|+++-|.+.|..... |..+.-.+...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 44556788888888887766 4567899999999999999988888887642 344444455566666666
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHH
Q 005305 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323 (703)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 323 (703)
++-+.....| . +|.-...+.-.|+++++.++|.+.... .--+......|..+.|.++..++
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r~-----~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGSL-----PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTCH-----HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCCh-----HHHHHHHHHcCcHHHHHHHHHHh
Confidence 5555555544 1 233333455568888888887765442 11111122355666666666554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.92 E-value=0.43 Score=38.43 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 471 HYACMIELLGREGLLDEAFALIRGAP---------FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
-+..|...+.+.|+++.|...|+..- ..+...++..|..++.+.|+++.|...++++++++|++..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 33445555555555555555554310 123455778888888899999999999999999999886654443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.59 E-value=0.58 Score=38.96 Aligned_cols=65 Identities=14% Similarity=-0.011 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHcCChh---HHHHHHHHHhCCC-C-CCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 499 TTKNMWAALLTACRVNGNLE---LGKFAAEKLYGME-P-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 499 p~~~~~~~ll~a~~~~g~~~---~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
|+..+--.+..++.+..+.. +|..+++.++..+ | ........|+-++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34443334444444444333 3666666666554 3 2344555666677777777777777776664
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.28 Score=54.60 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=50.3
Q ss_pred HHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 509 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.-|...|+++.|..+++++....|++-.+|..|+.+|...|+|+.|.-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345678999999999999999999999999999999999999999999999985
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.77 E-value=1.5 Score=37.88 Aligned_cols=75 Identities=12% Similarity=0.004 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHhhHHhcC---CHHHHHHHhhhcCcCC-----hhhHHHHHHHHHhcCCHHHHHHHHH
Q 005305 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWG---RIEDARHVFDKMLCKN-----VISWNALIAGYGNHGRGEEAVELFE 422 (703)
Q Consensus 351 a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~ 422 (703)
+++-|....+.|. ++..+...+.-++.+.+ +++++..+|+...+.+ ...+-.+.-+|.+.|++++|.+.++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3333444444332 34444444444455544 3345555554442221 2233334455566666666666666
Q ss_pred HHHH
Q 005305 423 QMLL 426 (703)
Q Consensus 423 ~m~~ 426 (703)
.+++
T Consensus 96 ~lL~ 99 (152)
T 1pc2_A 96 GLLQ 99 (152)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.18 E-value=7.5 Score=32.59 Aligned_cols=84 Identities=11% Similarity=0.007 Sum_probs=51.7
Q ss_pred hcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 005305 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458 (703)
Q Consensus 379 k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 458 (703)
+||++......+-.+. .+..-.+..+..+..+|.-++-.+++..+.. ..+|+...+..+.+||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555555554444432 2333445556667777777777777777433 2466777777777777777777777777777
Q ss_pred hHhhcCC
Q 005305 459 MSRDHKI 465 (703)
Q Consensus 459 m~~~~~~ 465 (703)
+-+ .|+
T Consensus 151 AC~-kG~ 156 (172)
T 1wy6_A 151 ACK-KGE 156 (172)
T ss_dssp HHH-TTC
T ss_pred HHH-hhh
Confidence 766 454
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.95 E-value=6 Score=33.51 Aligned_cols=66 Identities=14% Similarity=-0.002 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 498 KTTKNMWAALLTACRVNG---NLELGKFAAEKLYGMEPE-KLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 498 ~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.|+..+--.+..+..+.. +..+|..+++.++...|. .......|+-+|.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345444444455555444 345677777777776664 344566777788888888888888888775
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=89.91 E-value=2.4 Score=40.91 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCCC-chHHHHHHHhhHHh-----cCCHHHHHHHhhhcC--cC--ChhhHHHHHHHHHhc-CCHHH
Q 005305 348 LEHAKQAHAGLVRHGFGL-DIVANSALVDFYSK-----WGRIEDARHVFDKML--CK--NVISWNALIAGYGNH-GRGEE 416 (703)
Q Consensus 348 ~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k-----~g~~~~A~~~f~~m~--~~--~~~~~~~li~~~~~~-g~~~~ 416 (703)
...++..++++++....- +-..+..|...|.+ -|+.++|++.|++.. .| +..++......+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 344555555555543221 24567777777777 377777777777763 23 366666667777764 77888
Q ss_pred HHHHHHHHHHcCCC--cCH
Q 005305 417 AVELFEQMLLNGMR--PNH 433 (703)
Q Consensus 417 A~~l~~~m~~~g~~--p~~ 433 (703)
|.+.+++.+..... |+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 88888888776555 554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=88.79 E-value=1.4 Score=35.18 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCC-------CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGM-------EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+..-.-.|...+...|+++.|...++++++. .+..+..|..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444557788889999999999999988753 2334567999999999999999999999998753
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.32 E-value=40 Score=38.44 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=13.3
Q ss_pred HHHHHH-HHhcCChhHHHHHHHHH
Q 005305 98 CSQIEK-LVLNKRYREALELFEIL 120 (703)
Q Consensus 98 ~~~li~-~~~~g~~~~A~~l~~~m 120 (703)
|..++. +.+.++.+.+.++|...
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l 256 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKL 256 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555 55556666666666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.62 E-value=3.4 Score=35.41 Aligned_cols=94 Identities=5% Similarity=0.027 Sum_probs=59.4
Q ss_pred CcccHHHHHH-HHhcCCh------hHHHHHHHHHHHcCCCCCChhh----HHHHHHHH---hccCChHHHHHHHHHHHHh
Q 005305 94 SAGICSQIEK-LVLNKRY------REALELFEILEFEGGFDVGSST----YDALISAC---IGLRSIREVKRVFSYMLST 159 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~------~~A~~l~~~m~~~~~~~p~~~t----~~~ll~~~---~~~~~~~~a~~l~~~~~~~ 159 (703)
|.-+|=..+. .-+.|++ ++.+++|++.... ++|+... |..+.--| ...++.+.|+++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 6667888888 7778999 8888999988775 5776421 11111111 1236778888888888765
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHcc
Q 005305 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190 (703)
Q Consensus 160 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 190 (703)
+-.- ..+|......-.+.|++..|++++..
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 2222 44555555555666777777766653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.60 E-value=28 Score=33.99 Aligned_cols=167 Identities=9% Similarity=0.010 Sum_probs=100.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHH----HHHhHHcCCCCChhhHHHHHHHHh
Q 005305 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL----FLDLWEEFSDCGSRTFATMIRASA 242 (703)
Q Consensus 167 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~ 242 (703)
.+.++..-|.+.+++++|+.++..- ...+.+.|+...|-++ .+-+.+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556777788889999999886432 2345666777666554 444456778888887777777765
Q ss_pred cCCChH-HHHHHHHHHH----HhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHc---CC
Q 005305 243 GLELIS-VGKQLHSCAL----KMG--FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH---GY 312 (703)
Q Consensus 243 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---g~ 312 (703)
....-+ .-.++...++ +.| -..|+.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533211 1233333333 333 1247788889999999999999999888633323455565555555544 44
Q ss_pred cHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 005305 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359 (703)
Q Consensus 313 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 359 (703)
..++- .+.-..++. +...+++..|..++....
T Consensus 184 ~~e~d--------------lf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVA--------------EFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHH--------------HHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred cchHH--------------HHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 43321 111122222 334566777776666544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=84.88 E-value=5.5 Score=33.03 Aligned_cols=33 Identities=15% Similarity=-0.028 Sum_probs=25.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhCCCCCCcchH
Q 005305 506 ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 506 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
.|.-++.+.|+++.|++..+.+++.+|+|..+.
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 455677888888888888888888888875443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=84.11 E-value=52 Score=35.75 Aligned_cols=115 Identities=9% Similarity=-0.001 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHcC-CCcCHH--HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHH
Q 005305 412 GRGEEAVELFEQMLLNG-MRPNHV--TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 412 g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
.+.+.|..+|......+ +.+... ....+.......+...++...+..... ..++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 37789999998886543 222221 122222233334434566666666543 123333334444555578999999
Q ss_pred HHHHHhCCCCC-CHHHHHH-HHHHHHHcCChhHHHHHHHHHhC
Q 005305 489 FALIRGAPFKT-TKNMWAA-LLTACRVNGNLELGKFAAEKLYG 529 (703)
Q Consensus 489 ~~~~~~m~~~p-~~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~ 529 (703)
...|+.|+..+ +..-|.- +..+....|+.++|...++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999997543 2222221 22355678999999999999875
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.87 E-value=4.2 Score=32.01 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH
Q 005305 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478 (703)
Q Consensus 413 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 478 (703)
+.-+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+.+ +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4456667777777778899999999999999999999999999999877443 345567777653
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=82.52 E-value=21 Score=39.06 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=42.9
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh---
Q 005305 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK--- 379 (703)
Q Consensus 303 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k--- 379 (703)
....+.-.|+++.|++.+.+. -..|.+.+...+.-+.-.+- ...++..-. + .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~--~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKK--P-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCC--C-cc-cccHHHHHHHHHHHhh
Confidence 444556689999999987644 35566666666655443332 111111100 0 11 2235667777765
Q ss_pred cCCHHHHHHHhhhcC
Q 005305 380 WGRIEDARHVFDKML 394 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~ 394 (703)
..+..+|.+.|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 577888887766653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.68 E-value=43 Score=33.03 Aligned_cols=167 Identities=11% Similarity=0.029 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHH----HHhHHcCCCCChhhHHHHHHHHh
Q 005305 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF----LDLWEEFSDCGSRTFATMIRASA 242 (703)
Q Consensus 167 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 242 (703)
.+.++..-|.+.+++++|+.++-. -...+.+.|+...|-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566778889999999987632 233456667766655554 45556788888888877777776
Q ss_pred cCCChH-HHHHHHHHHH----HhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHH
Q 005305 243 GLELIS-VGKQLHSCAL----KMG--FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315 (703)
Q Consensus 243 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 315 (703)
....-+ .-..+...++ +.| -.-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655422 1223333333 333 234677888888999999999999888853222223566555555544443222
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 005305 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359 (703)
Q Consensus 316 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 359 (703)
+ |.+.-..+|. |...+++..|..++....
T Consensus 186 ~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 A--------------PLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 2 2222223332 334566777766555444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.52 E-value=8.8 Score=33.45 Aligned_cols=29 Identities=17% Similarity=0.054 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGAPF 497 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 497 (703)
.+.---+...|.+.|+.++|+.+++.+|.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 33434455667777888888888887765
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.96 E-value=17 Score=28.42 Aligned_cols=86 Identities=10% Similarity=0.003 Sum_probs=60.2
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 245 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
..-++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-++.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345667777666666552 33333333455678999999999999999999999988866 45677788887777777
Q ss_pred HCCCCCCHhhH
Q 005305 325 DSGVKMDHFTF 335 (703)
Q Consensus 325 ~~g~~pd~~t~ 335 (703)
..| .|....|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 3444344
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.73 E-value=44 Score=32.61 Aligned_cols=167 Identities=13% Similarity=0.042 Sum_probs=99.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHH----HHHHHHCCCCCCHhhHHHHHHHHhc
Q 005305 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL----YYEMRDSGVKMDHFTFSMIIRICTR 344 (703)
Q Consensus 269 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~ll~a~~~ 344 (703)
+.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.++++|......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 445666678888888888876542 2234556776665554 4444556788888777777776655
Q ss_pred cCCHH-HHHHHHHHHHH----cC--CCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhc---CCH
Q 005305 345 LASLE-HAKQAHAGLVR----HG--FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH---GRG 414 (703)
Q Consensus 345 ~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---g~~ 414 (703)
...-+ .=..+...+++ .| ..-++.....+...|.+.|++.+|+.-|-.-...|...+-.|+.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33111 11333344443 32 2237788889999999999999999877633323455555555444443 433
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
.++ |...-.++| -|.-.|++..|..+|+...+
T Consensus 185 ~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred chH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 332 111112222 34567788888888887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 703 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 42/201 (20%), Positives = 72/201 (35%), Gaps = 12/201 (5%)
Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFE 422
VA S L ++ G I A H F+K + + ++ L + AV +
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227
Query: 423 QML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLG 480
+ L L+ LA GL + + ++ R +++P Y + L
Sbjct: 228 RALSLSPNHAVVHGNLAC--VYYEQGLIDLAIDTYR---RAIELQPHFPDAYCNLANALK 282
Query: 481 REGLLDEAFALIRGA--PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538
+G + EA A T + L R GN+E K + PE + +
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 539 VVLLNIYNSSGKLKEAAEVIR 559
L ++ GKL+EA +
Sbjct: 343 SNLASVLQQQGKLQEALMHYK 363
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 703 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.44 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.42 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.88 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.88 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.8 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.76 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.75 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.74 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.73 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.73 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.31 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.2 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.17 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.08 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.06 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.05 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.95 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.95 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.94 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.89 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.87 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.76 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.73 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.67 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.62 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.6 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.54 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.48 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.46 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.45 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.43 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.38 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.37 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.25 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.16 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.08 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.87 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.79 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.76 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.75 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.51 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.45 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.24 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.88 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.83 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.71 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 90.01 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.29 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.33 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.35 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.35 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 80.33 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.7e-19 Score=187.29 Aligned_cols=370 Identities=12% Similarity=0.053 Sum_probs=249.5
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhH
Q 005305 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLE 214 (703)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~ 214 (703)
..+.+.|++++|.+.+..+++.. +.++.++..+...|.+.|++++|+..|++..+ .+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence 33445566666666666666543 23344555555666666666666666655432 233455555555555566666
Q ss_pred HHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhc--
Q 005305 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM-- 292 (703)
Q Consensus 215 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m-- 292 (703)
|+..+........ .+..........+...+....+.......
T Consensus 86 A~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (388)
T d1w3ba_ 86 AIEHYRHALRLKP------------------------------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHCT------------------------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred ccccccccccccc------------------------------------ccccccccccccccccccccccccccccccc
Confidence 6555555544321 11222222222222222222222222111
Q ss_pred -CCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHH
Q 005305 293 -SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371 (703)
Q Consensus 293 -~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 371 (703)
.......+..........+....+...+.+..... +-+...+..+...+...+..+.|...+..+++... .+..++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 207 (388)
T d1w3ba_ 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYI 207 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred cccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHH
Confidence 12233334444445555666666666666655542 22344555566666777777777777777776542 2566778
Q ss_pred HHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccC
Q 005305 372 ALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSG 447 (703)
Q Consensus 372 ~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 447 (703)
.+...|...|++++|...|+... ..+...|..+...|.+.|++++|+..|++..+. .|+ ..++..+..++...|
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~ 285 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHS
T ss_pred HHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 88888888999999988888764 345667888888999999999999999998874 554 477888889999999
Q ss_pred CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHH
Q 005305 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKT-TKNMWAALLTACRVNGNLELGKFAAE 525 (703)
Q Consensus 448 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~ 525 (703)
++++|.+.++.... ..+.+...+..+...+.+.|++++|.+.|++ +...| +..+|..+...+...|++++|...++
T Consensus 286 ~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 286 SVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998877 3456778888999999999999999999987 45556 46688889999999999999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 526 KLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 526 ~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
++++++|+++.+|..|+.+|.+.|+
T Consensus 364 ~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 364 EAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.1e-18 Score=178.88 Aligned_cols=355 Identities=17% Similarity=0.110 Sum_probs=287.0
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC
Q 005305 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281 (703)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 281 (703)
+...+.+.|++++|++.|+++.+... -+...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 34556778899999999988877532 245677778888888999999999999888875 5667889999999999999
Q ss_pred HHHHHHHHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005305 282 IEDAQGVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358 (703)
Q Consensus 282 ~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 358 (703)
+++|...+...... +...+..........+....+............ .+..............+....+.......
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence 99999999887643 333455555556666777777776666655433 33444445555566777888888888777
Q ss_pred HHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHH
Q 005305 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435 (703)
Q Consensus 359 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 435 (703)
.... +.+...+..+...+...|+.++|...+++.. ..+..+|..+...+...|++++|+..|++..... ..+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 7754 3356788888999999999999999999874 3456788999999999999999999999998863 335577
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 005305 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP--FKTTKNMWAALLTACRV 513 (703)
Q Consensus 436 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a~~~ 513 (703)
+..+...+.+.|++++|...|+.+.+ -.+.+...+..+...|...|++++|.+.++... .+.+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 77888999999999999999999887 233457788999999999999999999998642 24567788999999999
Q ss_pred cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.|++++|...+++++++.|+++.+|..++.+|.+.|++++|.+.+++..+
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=5.4e-12 Score=126.93 Aligned_cols=241 Identities=13% Similarity=-0.012 Sum_probs=166.6
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcC
Q 005305 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381 (703)
Q Consensus 302 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g 381 (703)
.....+.+.|++++|+..|++..+.. +-+..++..+..++...|+++.|...+..+++... .+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 44556778888888888888887753 22455666677777777777777777777776542 24566666667777777
Q ss_pred CHHHHHHHhhhcCcCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 005305 382 RIEDARHVFDKMLCKNVI---SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458 (703)
Q Consensus 382 ~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 458 (703)
++++|.+.++.....+.. .+........ ..+.......+..+...+..+++...|..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 777777776665321111 0000000000 00000011112223344566778888877
Q ss_pred hHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 459 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
..+...-.++...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++++|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7664444456778888899999999999999999874 3334 5778999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 537 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+|..++.+|.+.|++++|.+.+++..+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.3e-11 Score=124.06 Aligned_cols=266 Identities=11% Similarity=-0.023 Sum_probs=191.7
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC
Q 005305 271 ALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347 (703)
Q Consensus 271 ~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 347 (703)
.....|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 456678899999999999999864 356689999999999999999999999988753 2356677888888999999
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005305 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427 (703)
Q Consensus 348 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (703)
++.|...+..+.+..... .......... .. ..+.......+..+...+...+|...|.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAY-AHLVTPAEEG-AG---------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccch-HHHHHhhhhh-hh---------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999998754221 1110000000 00 001111111222334456677888888887764
Q ss_pred CC-CcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005305 428 GM-RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMW 504 (703)
Q Consensus 428 g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 504 (703)
.. .++...+..+...+...|++++|...|+..... .+-+...|..+...|.+.|++++|.+.|++. ...| +..+|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 22 234567777888889999999999999988763 2345778888999999999999999999874 3345 56689
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch-----------HHHHHHHHHhCCChHHHHH
Q 005305 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSN-----------YVVLLNIYNSSGKLKEAAE 556 (703)
Q Consensus 505 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~y~~~g~~~~A~~ 556 (703)
..+..+|...|++++|...++++++++|++... |..+..++...|+.+.+..
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999988876543 4556667777777765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=6.7e-08 Score=96.90 Aligned_cols=194 Identities=11% Similarity=0.048 Sum_probs=128.0
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcC-------cC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CcCHH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKML-------CK----NVISWNALIAGYGNHGRGEEAVELFEQMLLNGM----RPNHV 434 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~-------~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~ 434 (703)
+..+...|...|++..|...+.... .+ ....+..+...+...|+++.+...+........ .....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 3444555666666666666655431 11 112344555667777888888888877765321 12234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc-----hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-----CHHH
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR-----AMHYACMIELLGREGLLDEAFALIRGAP-FKT-----TKNM 503 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-----~~~~ 503 (703)
++......+...+...++...+............ ...+..+...+...|++++|...+++.. ..| ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 4555556667777777777777665442221111 2345556667788899999998887642 211 2345
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHh------CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 504 WAALLTACRVNGNLELGKFAAEKLY------GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~~------~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+..+..++...|++++|...+++++ +..|....++..++.+|.+.|++++|.+.+++..+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6667788889999999999888876 45566677899999999999999999999988754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=1e-07 Score=94.17 Aligned_cols=185 Identities=10% Similarity=0.102 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-C-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 005305 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--K-N-VISWNALIAGYGNHGRGEEAVELFE 422 (703)
Q Consensus 347 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~l~~ 422 (703)
..+.+..+++..++...+.+...+...+..+.+.|+.+.|..+|+.+.. | + ...|...+....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3567777888877765555667788888888888888888888887732 2 2 3368888888888888888888888
Q ss_pred HHHHcCCCcCHHHHHHHHH-HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC----CC
Q 005305 423 QMLLNGMRPNHVTFLAVLS-ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA----PF 497 (703)
Q Consensus 423 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 497 (703)
++++.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+++.|..+|++. +.
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 88775432 2233333222 234467888888888888773 3445677888888888888888888888763 23
Q ss_pred CCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 498 KTT--KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 498 ~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
.|+ ...|...+.--..+|+.+.+..+.+++.+..|++
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 332 4578877777788888888888888777666654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=2.7e-07 Score=92.34 Aligned_cols=219 Identities=8% Similarity=-0.014 Sum_probs=121.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHH----cCCCC---chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--------CChhhHHH
Q 005305 339 IRICTRLASLEHAKQAHAGLVR----HGFGL---DIVANSALVDFYSKWGRIEDARHVFDKMLC--------KNVISWNA 403 (703)
Q Consensus 339 l~a~~~~~~~~~a~~~~~~~~~----~g~~~---~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--------~~~~~~~~ 403 (703)
...+...+++..+...+..... .+... ....+..+...|...|+++.|...+..... ....++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 3344455555555555544432 11111 112344455666667777777666665421 12234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC--chHHHHHH
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLN----GMRPN--HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP--RAMHYACM 475 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l 475 (703)
+...+...++..++...+.+.... +..+. ...+......+...|+.++|...+....+...-.+ ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 555666677777777766655431 11111 12344445566777788888877776654211111 12344556
Q ss_pred HHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC---------CcchH
Q 005305 476 IELLGREGLLDEAFALIRGA-------PFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE---------KLSNY 538 (703)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~ 538 (703)
...|...|++++|.+.+++. +..|+ ...|..+...+...|+.++|...+++++++.+. ....+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 77777888888887777653 22333 336667777788888888888888877654332 11233
Q ss_pred HHHHHHHHhCCChHHHHHH
Q 005305 539 VVLLNIYNSSGKLKEAAEV 557 (703)
Q Consensus 539 ~~l~~~y~~~g~~~~A~~~ 557 (703)
..+...+...|+.+++.+-
T Consensus 338 ~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhcCCChHHHHH
Confidence 4455566677777777653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=1.4e-07 Score=93.22 Aligned_cols=213 Identities=10% Similarity=0.027 Sum_probs=157.9
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc--------------cCChHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 005305 110 YREALELFEILEFEGGFDVGSSTYDALISACIG--------------LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH 175 (703)
Q Consensus 110 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~--------------~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y 175 (703)
...+..+|+++...- +-+...|..-+..+-. .+..+++..+++..++...+.+...+...+..+
T Consensus 32 ~~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 32 TKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 345777888887753 4455555554443321 223577888999988765556667888889999
Q ss_pred HhCCChHHHHHHHccCCC--C-C-cccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHH-HHhcCCChHHH
Q 005305 176 VRCGMMIDARRLFDEMPE--R-N-LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIR-ASAGLELISVG 250 (703)
Q Consensus 176 ~~~g~~~~A~~~f~~m~~--~-d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a 250 (703)
.+.|+++.|+.+|+.+.. | + ...|...+....+.|+.++|.++|..+.+.+.. +...|..... -....|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHH
Confidence 999999999999988654 2 3 336889999999999999999999998876443 2333333332 23456889999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-------CcccHHHHHHHHHHcCCcHHHHHHHHHH
Q 005305 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-------TTVGWNTIIAGYALHGYSEEALDLYYEM 323 (703)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m 323 (703)
..+++.+++. .+.+...+...++.+.+.|+++.|+.+|++.... ....|...+.--...|+.+.+.++++++
T Consensus 189 ~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 189 FKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999887 3667889999999999999999999999986432 1236888888778889999999999888
Q ss_pred HHC
Q 005305 324 RDS 326 (703)
Q Consensus 324 ~~~ 326 (703)
.+.
T Consensus 268 ~~~ 270 (308)
T d2onda1 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=3.3e-08 Score=94.92 Aligned_cols=113 Identities=13% Similarity=-0.036 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHH
Q 005305 313 SEEALDLYYEMRDSGVKMD---HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389 (703)
Q Consensus 313 ~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 389 (703)
.+.++.-+.+........+ ..++..+-..+.+.|+++.|...|..+++... .++.+++.+..+|.+.|++++|...
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3455555555544321111 11333344455555666666666665555432 2445555555555556666666555
Q ss_pred hhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 390 FDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 390 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
|++... .+..+|..+...|...|++++|+..|++..+
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555521 2334555555555555555556555555554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=8.4e-08 Score=95.11 Aligned_cols=190 Identities=11% Similarity=0.075 Sum_probs=95.4
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHH
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHG-RGEEAVELFEQMLLNGMRPN-HVTFLAVLSAC 443 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 443 (703)
+++-+...+.+.+..++|.++++++.. .+...|+.....+...| ++++|+..+++..+. .|+ ..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHH
Confidence 333444444555555555555555432 23334555555554443 355555555555543 232 34555555555
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC-----
Q 005305 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGN----- 516 (703)
Q Consensus 444 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~----- 516 (703)
.+.|++++|...++.+.+ --+.+...|..+...+.+.|++++|++.++++ ...| +...|..+...+...+.
T Consensus 123 ~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 555555555555555554 12233455555555555555555555555542 2223 34455544444433333
Q ss_pred -hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 517 -LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 517 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.++|...+.++++++|++...|..+..++...| .+++.+.++...+
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 345566666666666666666666655554433 4555555555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=1.4e-07 Score=90.31 Aligned_cols=93 Identities=12% Similarity=-0.118 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHH
Q 005305 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378 (703)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 378 (703)
.|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...|..+++.... +..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 34444455555555555555555555432 223344555555555555555555555555554321 3344555555555
Q ss_pred hcCCHHHHHHHhhhc
Q 005305 379 KWGRIEDARHVFDKM 393 (703)
Q Consensus 379 k~g~~~~A~~~f~~m 393 (703)
..|+.++|...|+..
T Consensus 117 ~~g~~~~A~~~~~~a 131 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAF 131 (259)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 555555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.73 E-value=1.5e-08 Score=101.77 Aligned_cols=230 Identities=7% Similarity=-0.106 Sum_probs=159.7
Q ss_pred HcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchHHH-HHHHhhHHhcCCHHH
Q 005305 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA--SLEHAKQAHAGLVRHGFGLDIVAN-SALVDFYSKWGRIED 385 (703)
Q Consensus 309 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~~y~k~g~~~~ 385 (703)
..|++++|+..|+...+.. +-+...+.....++...+ +.+.+...+..+++.... +...+ ..+...+...|..++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHH
Confidence 3455778888888877653 224444555544544443 578888888888876443 34443 344567777889999
Q ss_pred HHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhh
Q 005305 386 ARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462 (703)
Q Consensus 386 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 462 (703)
|...++.... .+..+|+.+...+.+.|++++|...+++.... .|+.. .....+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~- 236 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL- 236 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH-
Confidence 9999888754 35668888888888888888877666554442 23322 222334455666677777777665
Q ss_pred cCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHH
Q 005305 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540 (703)
Q Consensus 463 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 540 (703)
.-+++...+..++..+...|+.++|.+.+.+ ....|+ ..+|..+..++...|+.++|...++++++++|++...|..
T Consensus 237 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 237 -GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp -SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred -hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 2344455566677788888999999998876 444553 4577888889999999999999999999999988888887
Q ss_pred HHHHHHh
Q 005305 541 LLNIYNS 547 (703)
Q Consensus 541 l~~~y~~ 547 (703)
|...+.-
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 8776653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=2e-07 Score=92.24 Aligned_cols=174 Identities=9% Similarity=0.062 Sum_probs=91.2
Q ss_pred HHHHHHhhHHhcC-CHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHH
Q 005305 369 ANSALVDFYSKWG-RIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSAC 443 (703)
Q Consensus 369 ~~~~Li~~y~k~g-~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 443 (703)
+|+.....+.+.| ++++|...++... ..+..+|+.+...+.+.|++++|+..|+++.+. .| +...|..+...+
T Consensus 79 a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~ 156 (315)
T d2h6fa1 79 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVI 156 (315)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHH
Confidence 3444444444433 2455555554442 234445555555555556666666666665553 33 335555555555
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCC------hHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcC
Q 005305 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL------LDEAFALIRG-APFKT-TKNMWAALLTACRVNG 515 (703)
Q Consensus 444 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~g 515 (703)
.+.|++++|.+.++.+.+. -+.+...|+.+...+.+.|. +++|.+.+.+ +...| +...|..+...+.. .
T Consensus 157 ~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~ 233 (315)
T d2h6fa1 157 QEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-R 233 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-T
T ss_pred HHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-c
Confidence 5666666666666655541 12234445444444444443 4566666554 23334 55667666555443 3
Q ss_pred ChhHHHHHHHHHhCCCCCC--cchHHHHHHHHHh
Q 005305 516 NLELGKFAAEKLYGMEPEK--LSNYVVLLNIYNS 547 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~ 547 (703)
..+++...++.+.++.|+. +..+..++.+|..
T Consensus 234 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 234 GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 3566777777777666653 3345566666654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.61 E-value=7.1e-08 Score=96.63 Aligned_cols=243 Identities=9% Similarity=-0.059 Sum_probs=169.5
Q ss_pred CCcHHHHHHHHHHHHCCCCCCHhhH-H---HHHHHH-------hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh
Q 005305 311 GYSEEALDLYYEMRDSGVKMDHFTF-S---MIIRIC-------TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379 (703)
Q Consensus 311 g~~~~A~~l~~~m~~~g~~pd~~t~-~---~ll~a~-------~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 379 (703)
+..++|++++.+..+. .|+..+. + .++... ...+.++.+...++.+++... .+...+..+...+..
T Consensus 43 ~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSR 119 (334)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHhhHHHHH
Confidence 3447777777777664 4554432 1 222222 233456778888888887653 366677777666666
Q ss_pred cC--CHHHHHHHhhhcCc---CChhhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHH
Q 005305 380 WG--RIEDARHVFDKMLC---KNVISWNALI-AGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERG 452 (703)
Q Consensus 380 ~g--~~~~A~~~f~~m~~---~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 452 (703)
.+ ++++|...+.++.. ++...|...+ ..+...|.+++|+..++++++. .| +...|..+..++...|++++|
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCHHHH
Confidence 55 58899999988743 3555665444 5677789999999999988875 44 457788888888888888777
Q ss_pred HHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCC
Q 005305 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA--PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530 (703)
Q Consensus 453 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 530 (703)
...+....+. .|. ...+...+...+..+++...+.+. ..+++...+..+...+...|+.++|...+.+....
T Consensus 198 ~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 198 GPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6555544331 111 112334455667777777766552 12234445666777778889999999999999999
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 531 ~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+|++..+|..++.+|.+.|++++|.+.+++..+.
T Consensus 272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=6.2e-06 Score=74.59 Aligned_cols=140 Identities=9% Similarity=-0.042 Sum_probs=99.4
Q ss_pred HhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHH
Q 005305 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERG 452 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 452 (703)
...+...|+++.|.+.|+++.+++...|..+...|...|++++|++.|++.++. .|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 445677899999999999988888888999999999999999999999999884 454 47788888888999999999
Q ss_pred HHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCC
Q 005305 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGME 531 (703)
Q Consensus 453 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 531 (703)
...|+..... .+++... .|...| +..+++ ..++..+..++...|++++|...+++++++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9998887651 1121100 000000 001111 2344456667777888888888888888777
Q ss_pred CCC
Q 005305 532 PEK 534 (703)
Q Consensus 532 p~~ 534 (703)
|+.
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 763
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.31 E-value=2.3e-06 Score=78.05 Aligned_cols=97 Identities=11% Similarity=-0.055 Sum_probs=76.7
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHH
Q 005305 467 PRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544 (703)
Q Consensus 467 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 544 (703)
|+...+......|.+.|++++|++.|++. ...| ++..|..+..+|...|+++.|...++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 55666666777778888888888888763 3333 566788888888888888888888888888888888888888888
Q ss_pred HHhCCChHHHHHHHHHHHh
Q 005305 545 YNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 545 y~~~g~~~~A~~~~~~m~~ 563 (703)
|.+.|++++|...+++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8888888888888887654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=1.1e-05 Score=78.31 Aligned_cols=192 Identities=10% Similarity=0.009 Sum_probs=128.1
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-cCHHH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLN----GMR-PNHVT 435 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-p~~~t 435 (703)
|....+.|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|+..+++..+. |-. ....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 33445678888889998888887632 12 347888888999999999999999876652 111 11245
Q ss_pred HHHHHHHHH-ccCCHHHHHHHHHHhHhhc---CCCC-chHHHHHHHHHHHhcCChHHHHHHHHhCC-C---CC----CH-
Q 005305 436 FLAVLSACS-RSGLSERGWEIFQSMSRDH---KIKP-RAMHYACMIELLGREGLLDEAFALIRGAP-F---KT----TK- 501 (703)
Q Consensus 436 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p----~~- 501 (703)
+..+...|. ..|++++|.+.++...+.. +.++ ...++..+...|...|++++|.+.|++.. . .+ ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 666666664 4699999999998875421 1111 13457788999999999999999998731 1 11 11
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc-----hHHHHHHHHHh--CCChHHHHHHHHHH
Q 005305 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-----NYVVLLNIYNS--SGKLKEAAEVIRTL 561 (703)
Q Consensus 502 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~y~~--~g~~~~A~~~~~~m 561 (703)
..+...+..+...|+.+.|...+++..+++|.... ....|+.+|.. .+++++|...++++
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22344555667889999999999999999886332 23455666655 35688888877543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.2e-05 Score=66.01 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=59.5
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChh
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLE 518 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~ 518 (703)
..+...|++++|...|....+. -+.+...|..+..+|...|++++|++.+++. .. +.+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 3455566666666666666541 2334455666666666666666666666542 22 224556666666666666666
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHH
Q 005305 519 LGKFAAEKLYGMEPEKLSNYVVLLNI 544 (703)
Q Consensus 519 ~a~~~~~~~~~~~p~~~~~~~~l~~~ 544 (703)
+|...++++++++|+++..+..+.++
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 66666666666666666555555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=4.1e-05 Score=74.09 Aligned_cols=214 Identities=10% Similarity=0.009 Sum_probs=103.0
Q ss_pred CHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHhccCCHHHHHHHH
Q 005305 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS----GVKMD-HFTFSMIIRICTRLASLEHAKQAH 355 (703)
Q Consensus 281 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~ 355 (703)
++++|.++|.+ ....|...|++++|.+.|.+..+. +-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 45677766543 577788888899998888877542 11111 124455555555555555555555
Q ss_pred HHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHH----cCCC
Q 005305 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG-NHGRGEEAVELFEQMLL----NGMR 430 (703)
Q Consensus 356 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~----~g~~ 430 (703)
...++. +.+.|+...+ ...+..+...|- ..|++++|++.|++..+ .+..
T Consensus 101 ~~a~~~---------------~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~ 154 (290)
T d1qqea_ 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (290)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhHH---------------hhhcccchhH-----------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 544331 1111111111 122333344442 24566666666655443 1111
Q ss_pred cC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc-----hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---
Q 005305 431 PN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR-----AMHYACMIELLGREGLLDEAFALIRGAP-FKTT--- 500 (703)
Q Consensus 431 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~--- 500 (703)
+. ..++..+...+...|++++|..+|+.+.+.....+. ...+..++..+...|+++.|.+.+++.. ..|.
T Consensus 155 ~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~ 234 (290)
T d1qqea_ 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence 11 134555556666666666666666665542111111 0122333444455666666666666542 1221
Q ss_pred ---HHHHHHHHHHHHHc--CChhHHHHHHHHHhCCC
Q 005305 501 ---KNMWAALLTACRVN--GNLELGKFAAEKLYGME 531 (703)
Q Consensus 501 ---~~~~~~ll~a~~~~--g~~~~a~~~~~~~~~~~ 531 (703)
......++.++... +.+++|...++++.+++
T Consensus 235 sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 12334444444432 23455555555444444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=4.4e-06 Score=68.70 Aligned_cols=91 Identities=12% Similarity=0.075 Sum_probs=81.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChH
Q 005305 475 MIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 552 (703)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 456788999999999999884 3344 67789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 005305 553 EAAEVIRTLRRKG 565 (703)
Q Consensus 553 ~A~~~~~~m~~~~ 565 (703)
+|...+++..+..
T Consensus 89 ~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 89 EAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.08 E-value=6e-06 Score=75.12 Aligned_cols=115 Identities=9% Similarity=-0.086 Sum_probs=77.5
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHH
Q 005305 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKT-TKNMWAALL 508 (703)
Q Consensus 431 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll 508 (703)
|+...+......+.+.|++++|...|..+.+. -+.+...|..+..+|.+.|++++|+..|++ +...| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 55555666666777777777777777776652 234566677777777777777777777776 34455 355777777
Q ss_pred HHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 005305 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 509 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 547 (703)
.++...|++++|...++++++++|++...+...+..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 788888888888888888877777655544444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.06 E-value=4.6e-06 Score=67.97 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=78.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCh
Q 005305 474 CMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551 (703)
Q Consensus 474 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 551 (703)
.+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4566778899999999999874 3345 5778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 005305 552 KEAAEVIRTL 561 (703)
Q Consensus 552 ~~A~~~~~~m 561 (703)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.4e-05 Score=72.08 Aligned_cols=88 Identities=9% Similarity=-0.001 Sum_probs=81.1
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHH
Q 005305 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555 (703)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 555 (703)
...+...|++++|++.|+++. +|++.+|..+...+...|++++|+..++++++++|+++..|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 455678999999999999874 6788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 005305 556 EVIRTLRRK 564 (703)
Q Consensus 556 ~~~~~m~~~ 564 (703)
+.+++..+.
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.7e-05 Score=69.09 Aligned_cols=90 Identities=10% Similarity=0.013 Sum_probs=69.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChH
Q 005305 475 MIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 552 (703)
....|.+.|++++|+..|++. ...| +...|..+...+...|++++|...++++++++|+++.+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 345667788888888888763 2233 56677788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhC
Q 005305 553 EAAEVIRTLRRK 564 (703)
Q Consensus 553 ~A~~~~~~m~~~ 564 (703)
+|.+.+++..+.
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888888877653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=3.6e-05 Score=66.96 Aligned_cols=116 Identities=9% Similarity=-0.031 Sum_probs=86.8
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNL 517 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~ 517 (703)
...|.+.|++++|...|+...+. -+.+...|..+...|...|++++|.+.|++. ...| +..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 34567788888888888877762 2445677778888888888888888888764 3344 556888888999999999
Q ss_pred hHHHHHHHHHhCCCCCCcchHHHHHHHH--HhCCChHHHHHH
Q 005305 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIY--NSSGKLKEAAEV 557 (703)
Q Consensus 518 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y--~~~g~~~~A~~~ 557 (703)
++|...+++++.++|+++..+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999888877766553 334456666543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=1.8e-05 Score=65.28 Aligned_cols=107 Identities=15% Similarity=-0.073 Sum_probs=79.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL---DEAFALIRGA-PFKTTK---NMWAALLT 509 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll~ 509 (703)
..+++.+...+++++|.+.|+...+. -+.++.++..+..++.+.++. ++|+++++++ ...|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677777888888888888888762 344667777788888765544 4688888874 334433 26778888
Q ss_pred HHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 510 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
+|...|++++|+..++++++++|++..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999877665554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=6.6e-05 Score=66.01 Aligned_cols=133 Identities=11% Similarity=0.022 Sum_probs=93.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHH
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 479 (703)
.+......+.+.|++++|+..|.+.++. -|.. .+..+.-......+ ....|+.+...|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~------------~~~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYE------------SSFSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTC------------CCCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhc------------cccchHHHhhhchh--------HHHHHHHHHHHH
Confidence 3445556777788888888888877653 1110 00000000111111 123566788889
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHH
Q 005305 480 GREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 554 (703)
.+.|++++|+..+++. ...| ++..|..+..++...|++++|...++++++++|+++.+...+..++.+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998873 4455 6778999999999999999999999999999999999998888888776665544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.87 E-value=0.0018 Score=60.97 Aligned_cols=226 Identities=11% Similarity=-0.068 Sum_probs=123.7
Q ss_pred cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHH
Q 005305 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR----LASLEHAKQAHAGLVRHGFGLDIVANSA 372 (703)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 372 (703)
+..|..+...+.+.+++++|++.|++..+.| |...+..+-..+.. ..+...+...+....+.+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence 3455556566666777777777777766655 22333223323322 234444444444444433
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH--Hcc
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN----HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC--SRS 446 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~ 446 (703)
+...+..+...+.. .++.+.|...+++....|..+....+ ...... ...
T Consensus 69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~ 123 (265)
T d1ouva_ 69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVT 123 (265)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSC
T ss_pred ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCccc
Confidence 22223333222222 33455666666666555432221111 111111 123
Q ss_pred CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChh
Q 005305 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR----EGLLDEAFALIRGAPFKTTKNMWAALLTACRV----NGNLE 518 (703)
Q Consensus 447 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~ 518 (703)
.....+...+..... ..+...+..|...|.. ..+...+...++......+......|...+.. ..+.+
T Consensus 124 ~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 124 RDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred chhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence 345555555555443 2344555556666654 34555666666554333455555555555544 46889
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 005305 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNS----SGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 519 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~~ 566 (703)
.|...++++.+.. ++..+..|+.+|.+ ..+.++|.+.+++..+.|-
T Consensus 200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9999999988764 46788899999986 3489999999999887764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00024 Score=62.29 Aligned_cols=63 Identities=5% Similarity=-0.098 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 502 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
.+|..+..+|.+.|++++|+..+++++.++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 356677888899999999999999999999999999999999999999999999999998764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.012 Score=56.79 Aligned_cols=209 Identities=11% Similarity=0.077 Sum_probs=82.5
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHh
Q 005305 129 GSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208 (703)
Q Consensus 129 ~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 208 (703)
|..-...+.+-|.+.|.++.|..++..+. -+..++..|.+.++++.|..++... .+..+|..+...+.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHh
Confidence 33333444444444455555554444321 2334444444555555554444433 233345555555544
Q ss_pred CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 005305 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 288 (703)
.....-| .+.......++.....++..+-..|.+++...++...+... ..+..+++.|+..|++.+. ++-.+.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~ 154 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREH 154 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHH
Confidence 4433221 11112222333444445555555555555555555443221 3344455555555555432 222222
Q ss_pred HhhcCCC-----------CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 005305 289 FDEMSEK-----------TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357 (703)
Q Consensus 289 f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 357 (703)
+.....+ ...-|..++.-|.+.|++++|+.+. .+. .++..-....+..+.+..+.+...++...
T Consensus 155 l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 2222111 1122455555555555555555443 221 23333333344445555555544444444
Q ss_pred HHH
Q 005305 358 LVR 360 (703)
Q Consensus 358 ~~~ 360 (703)
.++
T Consensus 230 yL~ 232 (336)
T d1b89a_ 230 YLE 232 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.67 E-value=0.00033 Score=60.05 Aligned_cols=63 Identities=17% Similarity=0.037 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 502 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
.+|..+..++.+.|++++|...++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466778888899999999999999999999999999999999999999999999999988753
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.62 E-value=0.00028 Score=61.77 Aligned_cols=64 Identities=3% Similarity=-0.071 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 501 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
...|..+..++.+.|++++|...+.++++++|+++.+|..++.+|.+.|++++|.+.+++..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4467778888899999999999999999999999999999999999999999999999998863
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.60 E-value=0.00055 Score=59.74 Aligned_cols=130 Identities=8% Similarity=-0.041 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhc
Q 005305 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482 (703)
Q Consensus 403 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 482 (703)
.....+...|++++|+..|.+.++. .+. ........+... + -+.....|..+...|.+.
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~~~----~-----~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADGAK----L-----QPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHHGG----G-----HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHHHH----h-----ChhhHHHHHHHHHHHHhh
Confidence 3455667788888888888876641 110 000001111000 0 012345677788889999
Q ss_pred CChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHH
Q 005305 483 GLLDEAFALIRG-APFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553 (703)
Q Consensus 483 g~~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 553 (703)
|++++|+..+++ +...| +...|..+..++...|++++|...++++++++|++..++..|..++.+.....+
T Consensus 91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 34445 567899999999999999999999999999999999888888877765444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.57 E-value=0.014 Score=54.30 Aligned_cols=62 Identities=8% Similarity=-0.102 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhC
Q 005305 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG----LELISVGKQLHSCALKMG 261 (703)
Q Consensus 197 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g 261 (703)
..|..|...+.+.+++++|++.|++..+.| |...+..|...+.. ..+...+...+....+.+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~ 68 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 68 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence 344555555556666666666666665544 33333333333332 345555555555555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.54 E-value=0.00067 Score=59.12 Aligned_cols=92 Identities=10% Similarity=0.009 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhC
Q 005305 471 HYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 548 (703)
.|+.+...|.+.|++++|+..+++. .. +.+...|..+..++...|++++|...++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4666777888999999999998873 33 346778889999999999999999999999999999999988888888777
Q ss_pred CChHH-HHHHHHHHH
Q 005305 549 GKLKE-AAEVIRTLR 562 (703)
Q Consensus 549 g~~~~-A~~~~~~m~ 562 (703)
+...+ ..+++..|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 65543 445555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=1.2e-05 Score=84.56 Aligned_cols=91 Identities=8% Similarity=-0.068 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 005305 471 HYACMIELLGREGLLDEAFALIRGAPFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 549 (703)
.+..+...+.+.|+.++|...+.+.. .++ ..++..+...++..|++++|...++++++++|++...|..|+.+|...|
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp ---------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence 33444444444555554444332210 011 1234444455555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHH
Q 005305 550 KLKEAAEVIRTLR 562 (703)
Q Consensus 550 ~~~~A~~~~~~m~ 562 (703)
+..+|...+.+..
T Consensus 201 ~~~~A~~~y~ral 213 (497)
T d1ya0a1 201 DHLTTIFYYCRSI 213 (497)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.48 E-value=0.00037 Score=56.07 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=54.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC
Q 005305 201 MIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280 (703)
Q Consensus 201 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 280 (703)
.+...+.+.|++++|+..|++....... +...|..+..++...+++++|...+..+++.. +.+..++..|...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 3455566667777777777766654322 34555666666666666666666666666654 445566666666666666
Q ss_pred CHHHHHHHHhh
Q 005305 281 SIEDAQGVFDE 291 (703)
Q Consensus 281 ~~~~A~~~f~~ 291 (703)
++++|.+.|++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66666666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.00017 Score=59.82 Aligned_cols=91 Identities=14% Similarity=0.045 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc-------hHHHHH
Q 005305 472 YACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-------NYVVLL 542 (703)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 542 (703)
+..+.+.|.+.|++++|++.|++. ...| +...|..+..++.+.|+++.|...++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345667788888888888888763 2333 5778888889999999999999999999988887765 455677
Q ss_pred HHHHhCCChHHHHHHHHHHH
Q 005305 543 NIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 543 ~~y~~~g~~~~A~~~~~~m~ 562 (703)
..+...+++++|.+.+++..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 77888899999999998765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00055 Score=55.93 Aligned_cols=96 Identities=10% Similarity=0.018 Sum_probs=62.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCH---HHHHHHhhhcCcCC-----hhhHHHHHHH
Q 005305 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI---EDARHVFDKMLCKN-----VISWNALIAG 407 (703)
Q Consensus 336 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~---~~A~~~f~~m~~~~-----~~~~~~li~~ 407 (703)
..+++.+...+++++|++.|+.+++.+. .++.+...+..++.+.++. ++|..+|+++...+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 3456666667777777777777777643 2556666677666664443 45777777764322 2256667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHH
Q 005305 408 YGNHGRGEEAVELFEQMLLNGMRPNHV 434 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ 434 (703)
|.+.|++++|++.|+++++ +.|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 7777777777777777777 456543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.43 E-value=0.033 Score=53.56 Aligned_cols=280 Identities=12% Similarity=0.043 Sum_probs=127.6
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHH
Q 005305 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309 (703)
Q Consensus 230 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 309 (703)
|..-...+..-|.+.|.++.|..++..+. -+..++..|.+.++++.|.+++.... +..+|..+...+.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHh
Confidence 33344444555555555555555554221 13345555666666666666665432 34566666666665
Q ss_pred cCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHH
Q 005305 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389 (703)
Q Consensus 310 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 389 (703)
.....-| .+...+...++.....++..+-..|.++....+++..... -..+..+++-|+.+|++.+. ++-.+.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~ 154 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREH 154 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHH
Confidence 5544332 1222233345555556666666666666666666655432 13355566667777776542 232222
Q ss_pred hhhcCcC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 005305 390 FDKMLCK-----------NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458 (703)
Q Consensus 390 f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 458 (703)
+.....+ ....|.-++-.|.+.|++++|+.+. .+. .|+..-....+..+.+..+.+...+....
T Consensus 155 l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 2222110 1122344444445555555444332 111 12221222233334444444444444333
Q ss_pred hHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchH
Q 005305 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 459 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
..+. .| ...+.++......-+..+..+.+ .+.+++......++.....+ +...+
T Consensus 230 yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~-------------------~k~~~l~li~p~Le~v~~~n--~~~vn 283 (336)
T d1b89a_ 230 YLEF---KP--LLLNDLLMVLSPRLDHTRAVNYF-------------------SKVKQLPLVKPYLRSVQNHN--NKSVN 283 (336)
T ss_dssp HHHH---CG--GGHHHHHHHHGGGCCHHHHHHHH-------------------HHTTCTTTTHHHHHHHHTTC--CHHHH
T ss_pred HHHc---CH--HHHHHHHHHhccCCCHHHHHHHH-------------------HhcCCcHHHHHHHHHHHHcC--hHHHH
Confidence 3321 12 22233333333333444444433 44455555555555554422 34678
Q ss_pred HHHHHHHHhCCChHHHHHHH
Q 005305 539 VVLLNIYNSSGKLKEAAEVI 558 (703)
Q Consensus 539 ~~l~~~y~~~g~~~~A~~~~ 558 (703)
..|.++|...++++.-++.+
T Consensus 284 ~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 284 ESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCcchhHHHHHHH
Confidence 89999999999876544444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.38 E-value=0.00085 Score=57.39 Aligned_cols=127 Identities=11% Similarity=-0.077 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 478 (703)
..+......+.+.|++.+|+..|.+.+.. -|... ...-.... ..... .....|+.+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~---~~~~~-----~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILL---DKKKN-----IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHH---HHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHH---Hhhhh-----HHHHHHhhHHHH
Confidence 45666777888889999999999888763 11100 00000000 00000 123467778888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 479 LGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 479 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
|.+.|++++|++.+++. ...| +..+|..+..++...|++++|...++++++++|+++.+...+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999873 3445 67799999999999999999999999999999999887766655543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.37 E-value=0.0014 Score=57.04 Aligned_cols=62 Identities=6% Similarity=-0.044 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+|..+..++...|++++|...+++++.++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667778899999999999999999999999999999999999999999999999998754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.25 E-value=0.00076 Score=59.34 Aligned_cols=113 Identities=12% Similarity=0.008 Sum_probs=80.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~ 518 (703)
........|++++|.+.|.....-+.-.+-... ...........-++. -....+..+..++...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 335677889999999998888763211110000 000011111111111 12346788899999999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 519 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+|...++++++.+|.+...|..++.+|.+.|++++|.+.|+++++
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999753
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.00014 Score=76.18 Aligned_cols=111 Identities=10% Similarity=-0.074 Sum_probs=48.0
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcCcCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHH
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNV-ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACS 444 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~ 444 (703)
...+..+...+.+.|+.++|...+.....++. .++..+...+...|++++|+..|++..+. .|+. .+|+.+...+.
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILAS 197 (497)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 34445555555666666666655554433221 24445555566666666666666666553 4443 56666666666
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh
Q 005305 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481 (703)
Q Consensus 445 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 481 (703)
..|+..+|...|.+... --+|-...+..|...|.+
T Consensus 198 ~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHH
Confidence 66666666666665544 223445555555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.0027 Score=52.15 Aligned_cols=90 Identities=12% Similarity=0.037 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc-----hHHHHHHH
Q 005305 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR-----AMHYACMI 476 (703)
Q Consensus 403 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li 476 (703)
.+...|.+.|++++|+..|.+.++. .| +...+..+..+|.+.|++++|.+.++.+++...-.+. ..+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3444555555555555555555553 22 3345555555555555555555555554431100011 12344444
Q ss_pred HHHHhcCChHHHHHHHHh
Q 005305 477 ELLGREGLLDEAFALIRG 494 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~ 494 (703)
+.+...+++++|.+.|++
T Consensus 87 ~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 555555555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.87 E-value=0.0016 Score=55.80 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhCC-------CCCC----cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 502 NMWAALLTACRVNGNLELGKFAAEKLYGM-------EPEK----LSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 502 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~p~~----~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
..|+.+..++...|++++|...+++.+.+ .|+. ...|..++.+|...|++++|.+.+++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666667777777777666666543 2221 23577899999999999999999999764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.79 E-value=0.0083 Score=52.34 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=80.8
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHH
Q 005305 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419 (703)
Q Consensus 340 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 419 (703)
......|+++.|.+.+..++..--. +.. . .....+-+...-..+....+..|..+...+...|++++|+.
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG-~~l-----~----~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRG-PVL-----D----DLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCS-STT-----G----GGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc-ccc-----c----cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 4566778888888888888763110 000 0 00000001111111222344577888899999999999999
Q ss_pred HHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHh----hcCCCCchHH
Q 005305 420 LFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSR----DHKIKPRAMH 471 (703)
Q Consensus 420 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 471 (703)
.++++++. .| +...+..++.++...|+..+|.+.|+.+.+ +.|+.|...+
T Consensus 89 ~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 89 ELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999885 44 568899999999999999999999988743 4689998765
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.76 E-value=0.00048 Score=58.35 Aligned_cols=127 Identities=10% Similarity=0.023 Sum_probs=71.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHcc----------CCHHHHHHHHHHhHhhcCCCCchHHHHHHH
Q 005305 408 YGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRS----------GLSERGWEIFQSMSRDHKIKPRAMHYACMI 476 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 476 (703)
|-+.+.+++|+..|+...+. .|+. .++..+..++... +.+++|...|+.+.+. -+.+...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHH
Confidence 44556677888888887774 4544 5555555555533 2345555555555541 122344555555
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005305 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 556 (703)
.+|...|++. ++... ..++++.|...++++++++|++...+..|... ..|.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 5544433211 11110 11235788999999999999987665555544 35556
Q ss_pred HHHHHHhCCC
Q 005305 557 VIRTLRRKGL 566 (703)
Q Consensus 557 ~~~~m~~~~~ 566 (703)
++.+..++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 6666655554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.75 E-value=0.00034 Score=59.32 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=42.2
Q ss_pred CChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC-----------hHHHHHHHHHHHhC
Q 005305 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK-----------LKEAAEVIRTLRRK 564 (703)
Q Consensus 515 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~-----------~~~A~~~~~~m~~~ 564 (703)
+.+++|...++++++++|+++.+|..++.+|...|+ +++|.+.+++..+.
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 345789999999999999999999999999988764 57888888877753
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.51 E-value=0.0023 Score=59.98 Aligned_cols=121 Identities=13% Similarity=0.024 Sum_probs=57.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHH
Q 005305 410 NHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDE 487 (703)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 487 (703)
+.|++++|+..+++.++. .| |...+..+...++..|++++|...|+...+ +.|+ ...+..+..++...+..++
T Consensus 8 ~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 346666666666666653 33 335555555666666666666666666554 2233 2233333333333333333
Q ss_pred HHHHHHh--CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 488 AFALIRG--APFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 488 A~~~~~~--m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
+..-... ....|+ ...+......+...|+.++|...++++.+..|+.+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 3222111 111221 12222333344555666666666666665555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.0044 Score=47.72 Aligned_cols=72 Identities=15% Similarity=0.042 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHH
Q 005305 472 YACMIELLGREGLLDEAFALIRGA----P----FKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542 (703)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 542 (703)
+--+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|...++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 334555666666666666666542 1 1222 457788889999999999999999999999999988777764
Q ss_pred H
Q 005305 543 N 543 (703)
Q Consensus 543 ~ 543 (703)
.
T Consensus 88 ~ 88 (95)
T d1tjca_ 88 Y 88 (95)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.24 E-value=0.0015 Score=61.33 Aligned_cols=120 Identities=15% Similarity=0.067 Sum_probs=85.1
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHH
Q 005305 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTT-KNMWAALLTACRVNGNLELGK 521 (703)
Q Consensus 444 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~ 521 (703)
.+.|++++|...++..++ .-+.+...+..+...|++.|++++|.+.++.. ...|+ ...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 467999999999999988 45667899999999999999999999999874 34554 445555554544333333222
Q ss_pred HHHHHH-hCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 522 FAAEKL-YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 522 ~~~~~~-~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...... ...+|++...+...+..+.+.|+.++|.+.++++.+..
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 211111 12234445566677888999999999999999987654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.88 E-value=0.017 Score=49.02 Aligned_cols=62 Identities=11% Similarity=-0.009 Sum_probs=35.0
Q ss_pred hHHHH--HHHHHhcCCHHHHHHHHHHHHHcCC-CcC----------HHHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 400 SWNAL--IAGYGNHGRGEEAVELFEQMLLNGM-RPN----------HVTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 400 ~~~~l--i~~~~~~g~~~~A~~l~~~m~~~g~-~p~----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
+|..+ ...+.+.|++++|+..|++.++... .|+ ...|+.+..++...|++++|...++...+
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~ 83 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 83 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence 44444 3344456777777777777765210 111 24555666666666666666666655543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.016 Score=44.29 Aligned_cols=61 Identities=15% Similarity=0.010 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhCCCCCC-------cchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEK-------LSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+-.+...+.+.|+++.|...+++++++.|.+ ..+|..|+.+|.+.|++++|.+.++++.+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3467778899999999999999998665443 356889999999999999999999998864
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.71 E-value=0.7 Score=36.06 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=97.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHH
Q 005305 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 487 (703)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+-..+.++.+-+-+.+ ..++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHH
Confidence 34467777788887777653 24455555655555555555566666665443222 23555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 005305 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567 (703)
Q Consensus 488 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 567 (703)
...-+-.+. .+..-....++...+.|.-+.-..+++.+++-+.-++....-++++|.+.|...++.+++++.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 555554443 234455667788889999999999999988766556889999999999999999999999999999985
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.14 E-value=1.7 Score=34.54 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=21.1
Q ss_pred CcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 005305 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362 (703)
Q Consensus 312 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 362 (703)
++++|+++|++..+.|-. .....+. .....+.+++...+....+.|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc
Confidence 455666666666555421 1111111 122334555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=90.01 E-value=1.4 Score=35.17 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=34.3
Q ss_pred ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 005305 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS----SGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~~ 566 (703)
|.++|...+++..+.. ++.....|+.+|.. ..+.++|.+++++..+.|.
T Consensus 74 d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 5566777777766543 35667777888776 3578888888888877664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.29 E-value=4.5 Score=31.36 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=76.9
Q ss_pred HcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHH
Q 005305 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388 (703)
Q Consensus 309 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 388 (703)
-.|..++..++..+.... .+..-|+.++.-....-+-+...+.++.+-+. ++ ..+|+++.....
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FD------------ls~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FD------------LDKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SC------------GGGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cC------------chhhhcHHHHHH
Confidence 345555666665555442 13333444444333333433333333333221 11 124455544444
Q ss_pred HhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCC
Q 005305 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465 (703)
Q Consensus 389 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 465 (703)
.|-.+. .+..-.+..+..+.++|.-++-.++++.+.+. -+|++..+..+..||.+.|...++.+++.++-+ .|+
T Consensus 78 C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe-~G~ 151 (161)
T d1wy6a1 78 CGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK-KGE 151 (161)
T ss_dssp HHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred HHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-HhH
Confidence 443332 23334455667777888888877887776653 467777777888888888888888888877766 454
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.33 E-value=14 Score=35.93 Aligned_cols=406 Identities=11% Similarity=-0.009 Sum_probs=229.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCCCcch----HHHHHHHHHh
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIG--LRSIREVKRVFSYMLSTGFEPDLYM----RNRVLLMHVR 177 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~--~~~~~~a~~l~~~~~~~g~~~~~~~----~~~Li~~y~~ 177 (703)
..++|+..++..+...+. + . | -..|...-..-.. .....+ +...+.+ .|+... ...-+..+.+
T Consensus 16 a~~~~~~~~~~~~~~~L~--d-y-p-L~pYl~~~~l~~~~~~~~~~~---i~~Fl~~---~p~~P~~~~lr~~~l~~L~~ 84 (450)
T d1qsaa1 16 AWDNRQMDVVEQMMPGLK--D-Y-P-LYPYLEYRQITDDLMNQPAVT---VTNFVRA---NPTLPPARTLQSRFVNELAR 84 (450)
T ss_dssp HHHTTCHHHHHHHSGGGT--T-S-T-THHHHHHHHHHHTGGGCCHHH---HHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhhhc--C-C-C-CHHHHHHHHHHhccccCCHHH---HHHHHHH---CCCChhHHHHHHHHHHHHHh
Confidence 778888888877776663 2 1 2 2334333322222 223333 3344443 344332 2334566778
Q ss_pred CCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 005305 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257 (703)
Q Consensus 178 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 257 (703)
.+++......+..-+ .++..-.....+....|+..+|...+......|.. ..+....++...
T Consensus 85 ~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~c~~l~~~~ 146 (450)
T d1qsaa1 85 REDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNACDKLFSVW 146 (450)
T ss_dssp TTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTHHHHHHHHH
T ss_pred ccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchHHHHHHHHH
Confidence 889888777665433 24444556778888899999999988888765532 112233445555
Q ss_pred HHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHH
Q 005305 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337 (703)
Q Consensus 258 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 337 (703)
.+.|. .+....-.-+......|+...|..+...++..........+.... ++..+..... .. .++......
T Consensus 147 ~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~---~~--~~~~~~~~~ 217 (450)
T d1qsaa1 147 RASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---TT--GATDFTRQM 217 (450)
T ss_dssp HHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---HS--CCCHHHHHH
T ss_pred HhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHh---cC--CCChhhhHH
Confidence 55553 333344445556667799999999998887654444455554433 2233322221 11 233333333
Q ss_pred HHHHHhc--cCCHHHHHHHHHHHHHcCCCCchH---HHHHHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHh
Q 005305 338 IIRICTR--LASLEHAKQAHAGLVRHGFGLDIV---ANSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGN 410 (703)
Q Consensus 338 ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~---~~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~ 410 (703)
+..+..+ ..+.+.+..++............. ....+.......+..+.|...++... ..+.....-.+.....
T Consensus 218 ~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~ 297 (450)
T d1qsaa1 218 AAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALG 297 (450)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHH
Confidence 3334333 246777777777766543222221 12223333444566677777666552 2233322224444556
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 005305 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 490 (703)
.++...+...|..|... ..-...-.--+..+....|+.++|..+|..... .++ -|.-|.. .+.|..-.
T Consensus 298 ~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa--~~Lg~~~~--- 365 (450)
T d1qsaa1 298 TGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAA--QRIGEEYE--- 365 (450)
T ss_dssp HTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHH--HHTTCCCC---
T ss_pred cCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHH--HHcCCCCC---
Confidence 78899999999887542 122234445667888999999999999998854 233 3444322 12232100
Q ss_pred HH-HhCCCCCCH-HH---HHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 491 LI-RGAPFKTTK-NM---WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 491 ~~-~~m~~~p~~-~~---~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
+- ...+..++. .. -..-+..+...|....|...+..+.+..+ +.-...++.+..+.|.++.|+....+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~--~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 366 LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 00 001111111 10 11224456688999999999888875433 456778899999999999999876654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.35 E-value=1.9 Score=33.66 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHHhCCCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 516 NLELGKFAAEKLYGMEPEKL-SNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+.++|..++++++..+|.+. ..+..|+-+|.+.|++++|.+.++.+.+
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34566666666665555443 4556666666677777777776666654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.35 E-value=2.2 Score=31.46 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 413 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
+.-++.+-++.+....+-|+.....+.|.||.+.+++..|.++|+..+.+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4556777777777778899999999999999999999999999998876443 44567777654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=80.33 E-value=27 Score=33.69 Aligned_cols=115 Identities=8% Similarity=0.027 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHcC-CCcCHH-HHHH-HHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHH
Q 005305 412 GRGEEAVELFEQMLLNG-MRPNHV-TFLA-VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 412 g~~~~A~~l~~~m~~~g-~~p~~~-t~~~-ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
.+.+.|..++....... ..++.. .... +.......+..+.+...+..... . ..+.......+....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc-c--ccchHHHHHHHHHHHHcCChHHH
Confidence 45666766666655432 222221 1111 11122233455666666655543 1 22333333344445566777777
Q ss_pred HHHHHhCCCCCCH-HHHHH-HHHHHHHcCChhHHHHHHHHHhC
Q 005305 489 FALIRGAPFKTTK-NMWAA-LLTACRVNGNLELGKFAAEKLYG 529 (703)
Q Consensus 489 ~~~~~~m~~~p~~-~~~~~-ll~a~~~~g~~~~a~~~~~~~~~ 529 (703)
...|+.|+..|.. .-|.- +..+....|+.+.|...+..+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 7777777543321 11211 22455667777777777777654
|