Citrus Sinensis ID: 005313

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700---
MAMAATATATSASVRYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMMAPPKSSSVPVSSSVQVQQFSQGQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGSSTRGHGSSVGGISISSEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPRRWAPTSSGRDGGRGGRNDSGYGGRGGRGFSGSSNRGDHDSRDRARYNDGYRGRSSSRSPDRAPSGRGRSPVRSFHQAMMERGRSSPTPQHKSPFRERSRSPLGGRRNFGNSFDDQLGSRRLSGGRDDGYGDEEEEGMIRPE
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccEEEcccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHccccEEEEcccHHHHHHHcccccccccEEEEccccccccccccHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHcccEEEEEcccccccccccEEEEEEEcccccHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccEEEEEEccccccccccccEEEEcccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHcHcccccccccccccccccccEEEccccEEEEEEcccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccHHHHHHcccEEEEccccccccccHHHccccHHHHHHHHHcccccccHHHHcccHHHcccccEEEEEEcccHHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHccEEEEcHHHHHHHHcccccccccccEEEEccHHHHHccccHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHccccEEEEEcccccccccccEEEEEEEEccHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHcccccEEEEHHHHHcccccccEEEEEEEcccccHHHHEEEcccccccccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccc
MAMAATATAtsasvryapedptlpkpwkglvdgrtgylyfwnpetnvtqyerpammappksssvpvsssvqvqqfsqgqrhgyspenednsyggrdtnagskleagtrgnqsarggpvqshnipngtasvgvgqggsstrghgssvggisisseayrrrhevtvsgdevpppfmsfdatgfppellrevhnagfssptpiqaqswpialqsRDIVAIAKtgsgktlgyllpgfihlkrcrndprlgptvlvlsptrELATQIQDEAVKFgkssrisctclyggapkgpqlkdidrgvdivvatpgrlnDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLvnpvqvnignvDELAANKAITQHIEVLAPMDKHRRLEQILRsqepgskiiVFCSTKKMCDQLARNLTRQFgaaaihgdksqseRDYVLNQfragrspvlVATDVaargldikdirvvvnydfptgvedyVHRIgrtgragatgvaytffgdqdsRYASDLIKLLEGAKQQVPRELRDMAsrgggmgrprrwaptssgrdggrggrndsgyggrggrgfsgssnrgdhdsrdraryndgyrgrsssrspdrapsgrgrspvrSFHQAMmergrssptpqhkspfrersrsplggrrnfgnsfddqlgsrrlsggrddgygdeeeegmirpe
mamaatatatsasvryapedptlpkpwkglVDGRTGYLYFWNPETNVTQYERPAMMAPPKSSSVPVSSSVQVQQFsqgqrhgyspenednsyggRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGsstrghgssvggisisseayRRRHEVtvsgdevpppfMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGapkgpqlkdidrGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRkivkevparrqtlmytatwpreVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIlrsqepgskiiVFCSTKKMCDQLARNLTRQFGAaaihgdksqseRDYVLNQfragrspvlvATDVaargldikdirvvVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEgakqqvpreLRDMasrgggmgrprrwaptssgrdggrggrndsgyggrggrgfsgssnrgdhdsrdraryndgyrgrsssrspdrapsgrgrspvRSFHQAMMergrssptpqhkspfrersrsplggrrnfgnsfddqlgsrrlsggrddgygdeeeegmirpe
mamaatatatsasVRYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMMAPPKsssvpvsssvqvqqfsqGQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGSSTRghgssvggisissEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIgrtgragatgVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPRRWAPTssgrdggrggrndsgyggrggrgfsgssnrgDHDSRDRARYNDGYrgrsssrspdrapsgrgrspVRSFHQAMMERGRSSPTPQHKSPFRERSRSPLGGRRNFGNSFDDQlgsrrlsggrddgygdeeeegMIRPE
**************************WKGLVDGRTGYLYFWNPETNVT****************************************************************************************************************************************LLREVHN*******PIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILR****GSKIIVFCSTKKMCDQLARNLTRQFGAAAIHG******RDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLL**********************************************************************************************************************************************************************
**********************************TGYLY*****************************************************************************************SVGVGQGGS*****************AYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI**************VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELR**********************************************************************************************************************************************************
*************VRYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAM************************************YGGRDTNAGSKLEA*************QSHNIPNGTASVGV*************VGGISISSEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS**********************GGRNDSGYGGRGGRG***********SRDRARYN************************RSFHQA**********************SPLGGRRNFGNSFDDQLGSRRLSGGRD***************
*************VRYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYER*************************************************************************GTASVGVGQGGSSTRGHGSSVGGISISSEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR**************************************************************************************************************************************D*YGDE*********
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MAMAATATATSASVRYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMMAPPKSSSVPVSSSVQVQQFSQGQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGSSTRGHGSSVGGISISSEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPRRWAPTSSGRDGGRGGRNDSGYGGRGGRGFSGSSNRGDHDSRDRARYNDGYRGRSSSRSPDRAPSGRGRSPVRSFHQAMMERGRSSPTPQHKSPFRERSRSPLGGRRNFGNSFDDQLGSRRLSGGRDDGYGDEEEEGMIRPE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query703 2.2.26 [Sep-21-2011]
Q9LYJ9645 DEAD-box ATP-dependent RN yes no 0.897 0.978 0.707 0.0
Q8H136619 DEAD-box ATP-dependent RN no no 0.778 0.883 0.739 0.0
P46942607 ATP-dependent RNA helicas N/A no 0.825 0.955 0.692 0.0
Q5VQL1708 DEAD-box ATP-dependent RN yes no 0.914 0.908 0.595 0.0
Q5JKF2 792 DEAD-box ATP-dependent RN no no 0.620 0.550 0.784 0.0
Q9SQV1 1088 DEAD-box ATP-dependent RN no no 0.688 0.444 0.657 0.0
Q5QMN3494 DEAD-box ATP-dependent RN no no 0.613 0.872 0.547 1e-136
Q9C718501 DEAD-box ATP-dependent RN no no 0.560 0.786 0.555 1e-130
Q755N4557 ATP-dependent RNA helicas yes no 0.570 0.719 0.560 1e-129
Q6CIV2554 ATP-dependent RNA helicas yes no 0.559 0.709 0.565 1e-129
>sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2 Back     alignment and function desciption
 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/657 (70%), Positives = 534/657 (81%), Gaps = 26/657 (3%)

Query: 3   MAATATATSASVRYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMMAPPKSS 62
           MAATA+A    +RYAPEDP LPKPWKGLVD RTGYLYFWNPETNVTQYERPA  APPK +
Sbjct: 1   MAATASA----IRYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPKLA 56

Query: 63  SVPVSSSVQVQQFSQGQRHGYSPENEDNSYG-GRDTNAGSKLEAGTRGNQSARGGPVQSH 121
           ++PVSSSVQ  Q S     G++   ED+ YG G D   G K ++G+R N++ R GP+ S+
Sbjct: 57  AIPVSSSVQTNQQSSS---GFNSGKEDDKYGRGSD---GPKSDSGSRFNEAGRTGPISSN 110

Query: 122 NIPNGTASVGVGQGGSSTRGHGSSVGGISISSEAYRRRHEVTVSGDEVPPPFMSFDATGF 181
           +  +G  +     GGSS RG  SS  G  +S EAY R+HE+TVSG +VPPP MSF+ATG 
Sbjct: 111 DAASGLGNAS--SGGSSARGPPSSAAGNELSPEAYCRKHEITVSGGQVPPPLMSFEATGL 168

Query: 182 PPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN 241
           P ELLREV++AGFS+P+PIQAQSWPIA+Q+RDIVAIAKTGSGKTLGYL+PGF+HL+R  N
Sbjct: 169 PNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHN 228

Query: 242 DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVV 301
           D R+GPT+LVLSPTRELATQIQ EA+KFGKSS+ISC CLYGGAPKGPQLK+I+RGVDIVV
Sbjct: 229 DSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVV 288

Query: 302 ATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 361
           ATPGRLNDILEM+RISL+QVSYLVLDEADRMLDMGFEPQIRKIV EVP +RQTLMYTATW
Sbjct: 289 ATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATW 348

Query: 362 PREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSK 421
           P+EVRKIAADLLVNP QVNIGNVDEL ANK+ITQ IEVLAPM+KH RLEQILRSQEPGSK
Sbjct: 349 PKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSK 408

Query: 422 IIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARG 481
           II+FCSTK+MCDQLARNLTR FGAAAIHGDKSQ+ERD VLNQFR+GR+PVLVATDVAARG
Sbjct: 409 IIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARG 468

Query: 482 LDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAK 541
           LD+KDIRVVVNYDFP GVEDYVHRIGRTGRAGATG+AYTFFGDQD+++ASDLIK+LEGA 
Sbjct: 469 LDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGAN 528

Query: 542 QQVPRELRDMASR-GGGMGRPRRWAP--------TSSGRDGGRGGRNDSGYGGRGGRGFS 592
           Q+VP ++R+MA+R GGGM + RRW               D G GGR +SGYG RG  G+ 
Sbjct: 529 QKVPPQVREMATRGGGGMNKFRRWGTPSSGGGGGRGGYGDSGYGGRGESGYGSRGDSGYG 588

Query: 593 GSSNRGDHDSRDRARYNDGYR--GRSSSRSPDRAPSG--RGRSPVRSFHQAMMERGR 645
           G  + G   S   +R + G    GR  SRSP+R   G     SP RSFH+AMM + R
Sbjct: 589 GRGDSGGRGSWAPSRDSSGSSGWGRERSRSPERFRGGPPSTSSPPRSFHEAMMMKNR 645

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2 Back     alignment and function description
>sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1 Back     alignment and function description
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1 Back     alignment and function description
>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2 Back     alignment and function description
>sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1 Back     alignment and function description
>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2 Back     alignment and function description
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1 Back     alignment and function description
>sp|Q755N4|DBP2_ASHGO ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP2 PE=3 SV=2 Back     alignment and function description
>sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DBP2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query703
255560866781 dead box ATP-dependent RNA helicase, put 0.917 0.825 0.748 0.0
224141279726 predicted protein [Populus trichocarpa] 0.927 0.898 0.744 0.0
224060117791 predicted protein [Populus trichocarpa] 0.970 0.862 0.678 0.0
449446676785 PREDICTED: LOW QUALITY PROTEIN: DEAD-box 0.900 0.806 0.728 0.0
449515569778 PREDICTED: DEAD-box ATP-dependent RNA he 0.890 0.804 0.725 0.0
356511678774 PREDICTED: DEAD-box ATP-dependent RNA he 0.970 0.881 0.660 0.0
334187683645 DEAD-box ATP-dependent RNA helicase 46 [ 0.897 0.978 0.707 0.0
359488682 863 PREDICTED: DEAD-box ATP-dependent RNA he 0.930 0.757 0.673 0.0
359488684 828 PREDICTED: DEAD-box ATP-dependent RNA he 0.930 0.789 0.695 0.0
297828586625 hypothetical protein ARALYDRAFT_477362 [ 0.786 0.884 0.755 0.0
>gi|255560866|ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  971 bits (2510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/701 (74%), Positives = 572/701 (81%), Gaps = 56/701 (7%)

Query: 3   MAATATATSASVRYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMMA-PPKS 61
           MAATATA     RYAPEDPTLPKPW+GLVDG+TGYLYFWNPETNVTQYERP   A P KS
Sbjct: 1   MAATATA---GPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPIATALPSKS 57

Query: 62  SSVPVSSSVQVQQFSQGQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSH 121
           S VP+SSSVQV    Q  R GYSP  E++ YG R   +GSK +AGT  NQ+A+GG  QS 
Sbjct: 58  SLVPISSSVQV---QQSSRRGYSPVKEEDRYG-RGNGSGSKPDAGTNFNQNAKGGGFQSQ 113

Query: 122 NIPNGTASVGVGQGGSSTRGHGSSVGGISISSEAYRRRHEVTVSGDEVPPPFMSFDATGF 181
           N+PNGTA+   G GG S RGHGSS GG  +S EAYRRRHE++V+GD+VPPP  +F+ATGF
Sbjct: 114 NVPNGTAN---GPGGPSARGHGSSAGGSILSPEAYRRRHEISVTGDDVPPPLTTFEATGF 170

Query: 182 PPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN 241
           P E+LREV +AGFS PTPIQAQSWPIALQS+DIVAIAKTGSGKTLGYLLPGFIHLKRCRN
Sbjct: 171 PSEILREVLSAGFSVPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPGFIHLKRCRN 230

Query: 242 DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVV 301
           DP+LGPTVLVLSPTRELATQIQDEAVKFG+SSRISCTCLYGGAPKGPQLK++DRGVDIVV
Sbjct: 231 DPQLGPTVLVLSPTRELATQIQDEAVKFGRSSRISCTCLYGGAPKGPQLKELDRGVDIVV 290

Query: 302 ATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 361
           ATPGRLNDILEMRRISL+QVSYLVLDEADRMLDMGFEPQIRKIVKEVP+RRQTLMYTATW
Sbjct: 291 ATPGRLNDILEMRRISLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSRRQTLMYTATW 350

Query: 362 PREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSK 421
           PREVRKIAADLLVNPVQVNIGNVDEL ANK+ITQ+IEVLAPM+KHRRLEQILRSQEPGSK
Sbjct: 351 PREVRKIAADLLVNPVQVNIGNVDELVANKSITQYIEVLAPMEKHRRLEQILRSQEPGSK 410

Query: 422 IIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARG 481
           II+FCSTKKMCDQLARNLTR FGAAAIHGDKSQSERD+VL+QFR GRSPVLVATDVAARG
Sbjct: 411 IIIFCSTKKMCDQLARNLTRTFGAAAIHGDKSQSERDHVLSQFRTGRSPVLVATDVAARG 470

Query: 482 LDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAK 541
           LDIKDIRVV+NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD++YASDLIK+LEGA 
Sbjct: 471 LDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYASDLIKVLEGAS 530

Query: 542 QQVPRELRDMASRGGGMGRPRRW--APTS-------------SGRDGGRGG--------- 577
           Q+VP E+RDMASRG GM + RRW  AP               SGRDGGRG          
Sbjct: 531 QRVPPEIRDMASRGSGMSKFRRWGSAPGGRDGGRGGRSDFGYSGRDGGRGSFGMSSSYSS 590

Query: 578 RNDSGYGGRGGRGFSGSSNRGDHDSRDRARYNDGYRG---------RSSSRSPD---RAP 625
           R + G    GGRG+   S       R R+R  D   G         R  SRSPD   RAP
Sbjct: 591 RPEKG----GGRGYDYESRDRSDRGRSRSRSPDRGSGLGDRSKSWNRDRSRSPDRNNRAP 646

Query: 626 SGRGRSPVRSFHQAMMERGRSSPTPQHKSPFRERSRSPLGG 666
               RSPVRSFHQAMME+GR+S  PQ++    ERSRSP  G
Sbjct: 647 P--TRSPVRSFHQAMMEKGRASSPPQNQ---LERSRSPCNG 682

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224141279|ref|XP_002324002.1| predicted protein [Populus trichocarpa] gi|222867004|gb|EEF04135.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224060117|ref|XP_002300045.1| predicted protein [Populus trichocarpa] gi|222847303|gb|EEE84850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446676|ref|XP_004141097.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 46-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449515569|ref|XP_004164821.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356511678|ref|XP_003524550.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Glycine max] Back     alignment and taxonomy information
>gi|334187683|ref|NP_001190309.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana] gi|114153757|sp|Q9LYJ9.2|RH46_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 46 gi|332004672|gb|AED92055.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359488682|ref|XP_002273908.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488684|ref|XP_003633801.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297828586|ref|XP_002882175.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp. lyrata] gi|297328015|gb|EFH58434.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query703
TAIR|locus:2222617712 AT5G14610 [Arabidopsis thalian 0.560 0.553 0.797 3.5e-216
TAIR|locus:2084178619 DRH1 "DEAD box RNA helicase 1" 0.768 0.872 0.713 2.4e-212
TAIR|locus:2081061 1088 AT3G06480 [Arabidopsis thalian 0.580 0.375 0.75 3.6e-191
ASPGD|ASPL0000006660563 AN5931 [Emericella nidulans (t 0.578 0.722 0.527 3.3e-115
TAIR|locus:2035741501 RH20 "RNA helicase 20" [Arabid 0.560 0.786 0.533 6.9e-115
CGD|CAL0003204562 DBP2 [Candida albicans (taxid: 0.678 0.848 0.475 3.8e-114
TAIR|locus:2162022591 AT5G63120 [Arabidopsis thalian 0.578 0.688 0.519 9.9e-114
UNIPROTKB|A4QSS5548 DBP2 "ATP-dependent RNA helica 0.578 0.742 0.516 2.6e-111
SGD|S000005056546 DBP2 "ATP-dependent RNA helica 0.576 0.741 0.526 2.3e-110
DICTYBASE|DDB_G0293168785 ddx17 "DEAD/DEAH box helicase" 0.583 0.522 0.503 3.4e-109
TAIR|locus:2222617 AT5G14610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1634 (580.3 bits), Expect = 3.5e-216, Sum P(3) = 3.5e-216
 Identities = 315/395 (79%), Positives = 355/395 (89%)

Query:   171 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLL 230
             PP   F++    P   R V++AGFS+P+PIQAQSWPIA+Q+RDIVAIAKTGSGKTLGYL+
Sbjct:   226 PPAAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLI 285

Query:   231 PGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290
             PGF+HL+R  ND R+GPT+LVLSPTRELATQIQ EA+KFGKSS+ISC CLYGGAPKGPQL
Sbjct:   286 PGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQL 345

Query:   291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
             K+I+RGVDIVVATPGRLNDILEM+RISL+QVSYLVLDEADRMLDMGFEPQIRKIV EVP 
Sbjct:   346 KEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPT 405

Query:   351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410
             +RQTLMYTATWP+EVRKIAADLLVNP QVNIGNVDEL ANK+ITQ IEVLAPM+KH RLE
Sbjct:   406 KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLE 465

Query:   411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSP 470
             QILRSQEPGSKII+FCSTK+MCDQLARNLTR FGAAAIHGDKSQ+ERD VLNQFR+GR+P
Sbjct:   466 QILRSQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTP 525

Query:   471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYA 530
             VLVATDVAARGLD+KDIRVVVNYDFP GVEDYVHRI          +AYTFFGDQD+++A
Sbjct:   526 VLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHA 585

Query:   531 SDLIKLLEGAKQQVPRELRDMASRGGG-MGRPRRW 564
             SDLIK+LEGA Q+VP ++R+MA+RGGG M + RRW
Sbjct:   586 SDLIKILEGANQKVPPQVREMATRGGGGMNKFRRW 620
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
TAIR|locus:2084178 DRH1 "DEAD box RNA helicase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081061 AT3G06480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000006660 AN5931 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2035741 RH20 "RNA helicase 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0003204 DBP2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
TAIR|locus:2162022 AT5G63120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A4QSS5 DBP2 "ATP-dependent RNA helicase DBP2" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
SGD|S000005056 DBP2 "ATP-dependent RNA helicase of the DEAD-box protein family" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293168 ddx17 "DEAD/DEAH box helicase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46942DB10_NICSY3, ., 6, ., 4, ., 1, 30.69200.82500.9555N/Ano
Q5VQL1RH14_ORYSJ3, ., 6, ., 4, ., 1, 30.59590.91460.9081yesno
Q9LYJ9RH46_ARATH3, ., 6, ., 4, ., 1, 30.70770.89750.9782yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.130.991
3rd Layer3.6.40.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query703
PTZ00110545 PTZ00110, PTZ00110, helicase; Provisional 1e-169
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 1e-151
PRK11776460 PRK11776, PRK11776, ATP-dependent RNA helicase Dbp 1e-114
cd00268203 cd00268, DEADc, DEAD-box helicases 1e-104
PRK10590456 PRK10590, PRK10590, ATP-dependent RNA helicase Rhl 1e-100
PLN00206518 PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel 6e-92
PRK11192434 PRK11192, PRK11192, ATP-dependent RNA helicase Srm 2e-86
PRK01297475 PRK01297, PRK01297, ATP-dependent RNA helicase Rhl 2e-81
PRK04837423 PRK04837, PRK04837, ATP-dependent RNA helicase Rhl 7e-78
PRK04537572 PRK04537, PRK04537, ATP-dependent RNA helicase Rhl 3e-69
PRK11634629 PRK11634, PRK11634, ATP-dependent RNA helicase Dea 3e-67
PTZ00424401 PTZ00424, PTZ00424, helicase 45; Provisional 6e-67
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 3e-63
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 6e-58
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 8e-43
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 2e-42
COG0514590 COG0514, RecQ, Superfamily II DNA helicase [DNA re 4e-33
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 4e-29
smart0049082 smart00490, HELICc, helicase superfamily c-termina 4e-28
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 3e-22
TIGR00614470 TIGR00614, recQ_fam, ATP-dependent DNA helicase, R 1e-18
COG1201 814 COG1201, Lhr, Lhr-like helicases [General function 1e-18
COG1205 851 COG1205, COG1205, Distinct helicase family with a 1e-17
TIGR01389591 TIGR01389, recQ, ATP-dependent DNA helicase RecQ 1e-16
PRK11057607 PRK11057, PRK11057, ATP-dependent DNA helicase Rec 5e-14
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 1e-12
COG1204 766 COG1204, COG1204, Superfamily II helicase [General 1e-12
PRK13766 773 PRK13766, PRK13766, Hef nuclease; Provisional 5e-11
COG1202 830 COG1202, COG1202, Superfamily II helicase, archaea 7e-09
TIGR03817 742 TIGR03817, DECH_helic, helicase/secretion neighbor 1e-07
PLN03137 1195 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4 5e-07
TIGR00643630 TIGR00643, recG, ATP-dependent DNA helicase RecG 2e-06
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 1e-05
pfam0039730 pfam00397, WW, WW domain 1e-05
TIGR04121 803 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA 2e-05
TIGR01587358 TIGR01587, cas3_core, CRISPR-associated helicase C 4e-05
cd09639353 cd09639, Cas3_I, CRISPR/Cas system-associated prot 7e-05
smart0045633 smart00456, WW, Domain with 2 conserved Trp (W) re 1e-04
COG1643 845 COG1643, HrpA, HrpA-like helicases [DNA replicatio 1e-04
PRK13766 773 PRK13766, PRK13766, Hef nuclease; Provisional 2e-04
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 3e-04
cd0020131 cd00201, WW, Two conserved tryptophans domain; als 3e-04
COG4098441 COG4098, comFA, Superfamily II DNA/RNA helicase re 4e-04
PTZ00146 293 PTZ00146, PTZ00146, fibrillarin; Provisional 7e-04
COG1203733 COG1203, COG1203, CRISPR-associated helicase Cas3 0.001
PRK01172 674 PRK01172, PRK01172, ski2-like helicase; Provisiona 0.002
TIGR01970 819 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H 0.004
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional Back     alignment and domain information 
 Score =  495 bits (1277), Expect = e-169
 Identities = 240/535 (44%), Positives = 312/535 (58%), Gaps = 47/535 (8%)

Query: 76  SQGQRHGYSPENEDNS---YGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGV 132
           S        P N  NS   Y       G+            R G     N   G    G+
Sbjct: 8   SSNGSVSSGPSNNYNSYGPYPDSSNPYGNYQANHQDNYGGFRPG---YGNYSGGYGGFGM 64

Query: 133 GQGGSSTRGHG----------------------SSVGGISISSEA--YRRRHEVT-VSGD 167
              GSST G                          V  +S S E    R+  E+T ++G+
Sbjct: 65  NSYGSSTLGKRLQPIDWKSINLVPFEKNFYKEHPEVSALS-SKEVDEIRKEKEITIIAGE 123

Query: 168 EVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227
            VP P +SF+ T FP  +L+ + NAGF+ PTPIQ Q WPIAL  RD++ IA+TGSGKTL 
Sbjct: 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLA 183

Query: 228 YLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGG 283
           +LLP  +H+      P L    GP VLVL+PTRELA QI+++  KFG SS+I  T  YGG
Sbjct: 184 FLLPAIVHI---NAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGG 240

Query: 284 APKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRK 343
            PK  Q+  + RGV+I++A PGRL D LE    +L +V+YLVLDEADRMLDMGFEPQIRK
Sbjct: 241 VPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRK 300

Query: 344 IVKEVPARRQTLMYTATWPREVRKIAADLLVN-PVQVNIGNVDELAANKAITQHIEVLAP 402
           IV ++   RQTLM++ATWP+EV+ +A DL    PV VN+G++D L A   I Q + V+  
Sbjct: 301 IVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVFVVEE 359

Query: 403 MDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTRQFG--AAAIHGDKSQSERDY 459
            +K  +L+ +L R    G KI++F  TKK  D L + L R  G  A  IHGDK Q ER +
Sbjct: 360 HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKEL-RLDGWPALCIHGDKKQEERTW 418

Query: 460 VLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAY 519
           VLN+F+ G+SP+++ATDVA+RGLD+KD++ V+N+DFP  +EDYVHRIGRTGRAGA G +Y
Sbjct: 419 VLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASY 478

Query: 520 TFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPRRWAPTSSGRDGG 574
           TF      R A DL+K+L  AKQ VP EL  +++        RRW     GR   
Sbjct: 479 TFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERSNGTERRRW--GGYGRFSN 531

Length = 545
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases Back     alignment and domain information
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ Back     alignment and domain information
>gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|215899 pfam00397, WW, WW domain Back     alignment and domain information
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated Back     alignment and domain information
>gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3 Back     alignment and domain information
>gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 Back     alignment and domain information
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional Back     alignment and domain information
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>gnl|CDD|226583 COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 703
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
PTZ00110545 helicase; Provisional 100.0
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 100.0
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0334997 consensus RNA helicase [RNA processing and modific 100.0
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0343 758 consensus RNA Helicase [RNA processing and modific 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 100.0
PTZ00424401 helicase 45; Provisional 100.0
KOG0346569 consensus RNA helicase [RNA processing and modific 100.0
KOG0347731 consensus RNA helicase [RNA processing and modific 100.0
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0327397 consensus Translation initiation factor 4F, helica 100.0
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 100.0
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 100.0
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
KOG4284 980 consensus DEAD box protein [Transcription] 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 100.0
PRK02362 737 ski2-like helicase; Provisional 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 100.0
PRK13767 876 ATP-dependent helicase; Provisional 100.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 100.0
PRK00254 720 ski2-like helicase; Provisional 100.0
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 100.0
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 100.0
PRK106891147 transcription-repair coupling factor; Provisional 100.0
PRK01172 674 ski2-like helicase; Provisional 100.0
TIGR00643630 recG ATP-dependent DNA helicase RecG. 100.0
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 100.0
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
COG1201 814 Lhr Lhr-like helicases [General function predictio 100.0
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 100.0
PHA02558501 uvsW UvsW helicase; Provisional 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
PRK09401 1176 reverse gyrase; Reviewed 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
PRK14701 1638 reverse gyrase; Provisional 100.0
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
COG1204 766 Superfamily II helicase [General function predicti 100.0
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 100.0
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 100.0
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 100.0
PRK13766 773 Hef nuclease; Provisional 100.0
COG1202830 Superfamily II helicase, archaea-specific [General 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 100.0
KOG0354746 consensus DEAD-box like helicase [General function 100.0
PRK09200790 preprotein translocase subunit SecA; Reviewed 100.0
KOG0352 641 consensus ATP-dependent DNA helicase [Replication, 100.0
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 100.0
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 100.0
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 100.0
COG1205 851 Distinct helicase family with a unique C-terminal 100.0
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 100.0
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 100.0
PRK04914 956 ATP-dependent helicase HepA; Validated 100.0
COG1200677 RecG RecG-like helicase [DNA replication, recombin 100.0
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.97
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.97
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.97
PRK05580679 primosome assembly protein PriA; Validated 99.97
PRK09694878 helicase Cas3; Provisional 99.97
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.97
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.96
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.96
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.96
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.96
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 99.95
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.95
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.95
KOG0950 1008 consensus DNA polymerase theta/eta, DEAD-box super 99.95
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.94
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.94
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.94
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.94
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 99.93
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.93
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.93
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.92
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 99.92
PRK13107 908 preprotein translocase subunit SecA; Reviewed 99.91
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.89
COG4096 875 HsdR Type I site-specific restriction-modification 99.88
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.88
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.88
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 99.87
KOG0387923 consensus Transcription-coupled repair protein CSB 99.86
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.85
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 99.85
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 99.84
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 99.84
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.83
KOG0922 674 consensus DEAH-box RNA helicase [RNA processing an 99.83
KOG1123776 consensus RNA polymerase II transcription initiati 99.83
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 99.83
smart00487201 DEXDc DEAD-like helicases superfamily. 99.83
KOG0923 902 consensus mRNA splicing factor ATP-dependent RNA h 99.83
PRK05298652 excinuclease ABC subunit B; Provisional 99.83
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.82
KOG0920 924 consensus ATP-dependent RNA helicase A [RNA proces 99.82
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 99.81
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 99.81
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 99.81
COG4889 1518 Predicted helicase [General function prediction on 99.8
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.8
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.8
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.79
KOG0924 1042 consensus mRNA splicing factor ATP-dependent RNA h 99.77
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.73
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 99.73
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 99.72
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 99.7
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 99.7
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 99.7
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 99.69
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.69
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 99.69
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.68
KOG0386 1157 consensus Chromatin remodeling complex SWI/SNF, co 99.68
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.67
KOG0925 699 consensus mRNA splicing factor ATP-dependent RNA h 99.66
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.65
CHL00122 870 secA preprotein translocase subunit SecA; Validate 99.63
KOG4439901 consensus RNA polymerase II transcription terminat 99.61
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.59
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 99.58
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 99.58
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 99.57
KOG1002791 consensus Nucleotide excision repair protein RAD16 99.57
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 99.56
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 99.52
TIGR00604 705 rad3 DNA repair helicase (rad3). All proteins in t 99.49
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.44
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 99.43
PRK14873665 primosome assembly protein PriA; Provisional 99.42
smart0049082 HELICc helicase superfamily c-terminal domain. 99.41
KOG1015 1567 consensus Transcription regulator XNP/ATRX, DEAD-b 99.4
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 99.37
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 99.35
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 99.32
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 99.3
COG0610 962 Type I site-specific restriction-modification syst 99.18
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 99.11
smart00489289 DEXDc3 DEAD-like helicases superfamily. 99.1
smart00488289 DEXDc2 DEAD-like helicases superfamily. 99.1
KOG2340698 consensus Uncharacterized conserved protein [Funct 98.94
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 98.93
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 98.83
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 98.79
KOG1001674 consensus Helicase-like transcription factor HLTF/ 98.7
PF0039731 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp 98.67
PRK15483 986 type III restriction-modification system StyLTI en 98.64
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 98.54
COG3587 985 Restriction endonuclease [Defense mechanisms] 98.52
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 98.39
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 98.32
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.3
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 98.29
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 98.24
smart0045632 WW Domain with 2 conserved Trp (W) residues. Also 98.23
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 98.22
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 98.21
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 98.07
TIGR00376637 DNA helicase, putative. The gene product may repre 98.05
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 98.02
PRK10875615 recD exonuclease V subunit alpha; Provisional 98.0
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.95
KOG3259163 consensus Peptidyl-prolyl cis-trans isomerase [Pos 97.94
PRK10536262 hypothetical protein; Provisional 97.93
cd0020131 WW Two conserved tryptophans domain; also known as 97.85
COG3421 812 Uncharacterized protein conserved in bacteria [Fun 97.85
PRK13889 988 conjugal transfer relaxase TraA; Provisional 97.81
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 97.81
KOG1803649 consensus DNA helicase [Replication, recombination 97.79
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 97.79
PRK13826 1102 Dtr system oriT relaxase; Provisional 97.54
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 97.5
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 97.44
KOG18051100 consensus DNA replication helicase [Replication, r 97.41
PF1324576 AAA_19: Part of AAA domain 97.37
PRK04296190 thymidine kinase; Provisional 97.31
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 97.22
KOG0298 1394 consensus DEAD box-containing helicase-like transc 97.21
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.09
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 97.07
PRK08181269 transposase; Validated 97.06
PRK06526254 transposase; Provisional 97.04
KOG0383696 consensus Predicted helicase [General function pre 96.99
KOG1131 755 consensus RNA polymerase II transcription initiati 96.98
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 96.97
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 96.92
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 96.92
PRK14974336 cell division protein FtsY; Provisional 96.91
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 96.91
smart00492141 HELICc3 helicase superfamily c-terminal domain. 96.88
PF13871278 Helicase_C_4: Helicase_C-like 96.74
smart00491142 HELICc2 helicase superfamily c-terminal domain. 96.73
smart00382148 AAA ATPases associated with a variety of cellular 96.71
TIGR01075 715 uvrD DNA helicase II. Designed to identify uvrD me 96.56
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 96.54
PRK07952244 DNA replication protein DnaC; Validated 96.53
PRK11773 721 uvrD DNA-dependent helicase II; Provisional 96.51
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 96.49
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 96.47
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 96.39
PRK10919 672 ATP-dependent DNA helicase Rep; Provisional 96.39
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 96.37
PRK08084235 DNA replication initiation factor; Provisional 96.36
PRK11054684 helD DNA helicase IV; Provisional 96.35
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 96.34
PHA02533534 17 large terminase protein; Provisional 96.32
KOG3973465 consensus Uncharacterized conserved glycine-rich p 96.31
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 96.3
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 96.3
PRK08116268 hypothetical protein; Validated 96.28
PRK06921266 hypothetical protein; Provisional 96.28
KOG3973465 consensus Uncharacterized conserved glycine-rich p 96.26
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.26
PRK08727233 hypothetical protein; Validated 96.25
PRK05642234 DNA replication initiation factor; Validated 96.21
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 96.21
PRK06893229 DNA replication initiation factor; Validated 96.19
PRK14712 1623 conjugal transfer nickase/helicase TraI; Provision 96.1
TIGR01074 664 rep ATP-dependent DNA helicase Rep. Designed to id 96.03
PRK08769319 DNA polymerase III subunit delta'; Validated 95.97
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 95.96
TIGR01073 726 pcrA ATP-dependent DNA helicase PcrA. Designed to 95.92
PRK14086617 dnaA chromosomal replication initiation protein; P 95.91
PRK13709 1747 conjugal transfer nickase/helicase TraI; Provision 95.88
PRK14723 767 flhF flagellar biosynthesis regulator FlhF; Provis 95.88
PRK12422445 chromosomal replication initiation protein; Provis 95.85
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 95.85
cd01124187 KaiC KaiC is a circadian clock protein primarily f 95.83
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 95.81
PRK05707328 DNA polymerase III subunit delta'; Validated 95.81
PF14617252 CMS1: U3-containing 90S pre-ribosomal complex subu 95.8
PRK11331459 5-methylcytosine-specific restriction enzyme subun 95.77
PRK00771437 signal recognition particle protein Srp54; Provisi 95.77
PRK09183259 transposase/IS protein; Provisional 95.75
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 95.75
PRK12377248 putative replication protein; Provisional 95.68
PRK06835329 DNA replication protein DnaC; Validated 95.66
KOG0701 1606 consensus dsRNA-specific nuclease Dicer and relate 95.66
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 95.64
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 95.62
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 95.56
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 95.54
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 95.53
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 95.52
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 95.44
PF02456369 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR 95.41
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 95.4
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 95.36
PHA03333752 putative ATPase subunit of terminase; Provisional 95.36
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 95.35
PTZ001121164 origin recognition complex 1 protein; Provisional 95.35
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 95.31
TIGR01547396 phage_term_2 phage terminase, large subunit, PBSX 95.22
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 95.21
PRK14088440 dnaA chromosomal replication initiation protein; P 95.14
PHA02544316 44 clamp loader, small subunit; Provisional 95.13
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 95.12
COG1484254 DnaC DNA replication protein [DNA replication, rec 95.1
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 95.1
TIGR02785 1232 addA_Gpos recombination helicase AddA, Firmicutes 95.1
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 95.09
PRK00149450 dnaA chromosomal replication initiation protein; R 95.06
TIGR00362405 DnaA chromosomal replication initiator protein Dna 95.04
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 95.04
PRK06964342 DNA polymerase III subunit delta'; Validated 94.91
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 94.91
PLN03025319 replication factor C subunit; Provisional 94.87
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 94.86
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 94.8
PRK14087450 dnaA chromosomal replication initiation protein; P 94.77
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 94.74
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 94.74
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 94.73
PTZ00293211 thymidine kinase; Provisional 94.73
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 94.71
PHA00729226 NTP-binding motif containing protein 94.66
TIGR02928365 orc1/cdc6 family replication initiation protein. M 94.64
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 94.63
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 94.62
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 94.61
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 94.61
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 94.6
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 94.59
PRK14873 665 primosome assembly protein PriA; Provisional 94.55
TIGR00064272 ftsY signal recognition particle-docking protein F 94.46
PRK11823446 DNA repair protein RadA; Provisional 94.43
PRK08699325 DNA polymerase III subunit delta'; Validated 94.43
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 94.43
COG0470325 HolB ATPase involved in DNA replication [DNA repli 94.42
PRK08533230 flagellar accessory protein FlaH; Reviewed 94.41
PF00004132 AAA: ATPase family associated with various cellula 94.38
PRK00411394 cdc6 cell division control protein 6; Reviewed 94.38
PRK12402337 replication factor C small subunit 2; Reviewed 94.38
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 94.38
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 94.33
COG2256436 MGS1 ATPase related to the helicase subunit of the 94.32
PRK06871325 DNA polymerase III subunit delta'; Validated 94.29
PRK08903227 DnaA regulatory inactivator Hda; Validated 94.26
PF13173128 AAA_14: AAA domain 94.23
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 94.23
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 94.22
PF03969362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 94.19
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 94.18
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 94.17
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 94.11
COG3973747 Superfamily I DNA and RNA helicases [General funct 94.11
cd03115173 SRP The signal recognition particle (SRP) mediates 94.07
PRK07993334 DNA polymerase III subunit delta'; Validated 94.06
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 94.02
PRK05580 679 primosome assembly protein PriA; Validated 94.01
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 93.98
COG3972660 Superfamily I DNA and RNA helicases [General funct 93.98
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 93.98
PRK13342413 recombination factor protein RarA; Reviewed 93.96
TIGR00595 505 priA primosomal protein N'. All proteins in this f 93.96
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 93.95
PHA03368738 DNA packaging terminase subunit 1; Provisional 93.95
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 93.93
PF02572172 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase 93.92
TIGR00643630 recG ATP-dependent DNA helicase RecG. 93.87
PRK06090319 DNA polymerase III subunit delta'; Validated 93.76
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 93.75
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 93.74
KOG02981394 consensus DEAD box-containing helicase-like transc 93.73
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 93.66
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 93.49
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 93.43
PRK09112351 DNA polymerase III subunit delta'; Validated 93.4
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 93.35
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 93.35
PRK13341 725 recombination factor protein RarA/unknown domain f 93.32
PRK08939306 primosomal protein DnaI; Reviewed 93.29
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 93.19
PRK07471365 DNA polymerase III subunit delta'; Validated 93.15
COG0593408 DnaA ATPase involved in DNA replication initiation 93.11
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 93.07
KOG2028554 consensus ATPase related to the helicase subunit o 93.06
COG2109198 BtuR ATP:corrinoid adenosyltransferase [Coenzyme m 93.02
PRK06067234 flagellar accessory protein FlaH; Validated 93.0
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 92.97
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 92.93
PRK14954 620 DNA polymerase III subunits gamma and tau; Provisi 92.91
COG4626546 Phage terminase-like protein, large subunit [Gener 92.87
PRK13833323 conjugal transfer protein TrbB; Provisional 92.8
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 92.75
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 92.75
PRK05973237 replicative DNA helicase; Provisional 92.71
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 92.66
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 92.62
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 92.61
PRK00440319 rfc replication factor C small subunit; Reviewed 92.55
CHL00181287 cbbX CbbX; Provisional 92.49
PRK14948 620 DNA polymerase III subunits gamma and tau; Provisi 92.48
PRK04328249 hypothetical protein; Provisional 92.47
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 92.45
PRK04195482 replication factor C large subunit; Provisional 92.4
COG1485367 Predicted ATPase [General function prediction only 92.38
PRK07940394 DNA polymerase III subunit delta'; Validated 92.26
PF05729166 NACHT: NACHT domain 92.24
PRK05896 605 DNA polymerase III subunits gamma and tau; Validat 92.23
PF03237384 Terminase_6: Terminase-like family; InterPro: IPR0 92.21
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 92.17
KOG1891271 consensus Proline binding protein WW45 [General fu 92.07
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 91.97
PRK10416318 signal recognition particle-docking protein FtsY; 91.96
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 91.84
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 91.83
PRK13894319 conjugal transfer ATPase TrbB; Provisional 91.75
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 91.74
CHL00095 821 clpC Clp protease ATP binding subunit 91.68
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 91.68
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 91.53
TIGR00959428 ffh signal recognition particle protein. This mode 91.43
KOG2036 1011 consensus Predicted P-loop ATPase fused to an acet 91.4
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 91.29
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 91.25
PRK10867433 signal recognition particle protein; Provisional 91.23
PRK10865 857 protein disaggregation chaperone; Provisional 91.21
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 91.16
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 91.16
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 91.07
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 90.8
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 90.64
PRK10689 1147 transcription-repair coupling factor; Provisional 90.59
cd03239178 ABC_SMC_head The structural maintenance of chromos 90.58
PHA00012361 I assembly protein 90.51
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 90.43
PRK06904472 replicative DNA helicase; Validated 90.42
PRK07399314 DNA polymerase III subunit delta'; Validated 90.35
PRK07414178 cob(I)yrinic acid a,c-diamide adenosyltransferase; 90.31
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 90.19
PRK14971 614 DNA polymerase III subunits gamma and tau; Provisi 90.18
KOG1133 821 consensus Helicase of the DEAD superfamily [Replic 89.95
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 89.9
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 89.89
COG1198 730 PriA Primosomal protein N' (replication factor Y) 89.85
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 89.71
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 89.59
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 89.54
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 89.53
KOG0740428 consensus AAA+-type ATPase [Posttranslational modi 89.5
KOG0745564 consensus Putative ATP-dependent Clp-type protease 89.47
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 89.4
PRK09354349 recA recombinase A; Provisional 89.3
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 89.29
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 89.24
PRK13851344 type IV secretion system protein VirB11; Provision 89.22
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 89.18
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 89.17
PF00265176 TK: Thymidine kinase; InterPro: IPR001267 Thymidin 89.15
COG0210 655 UvrD Superfamily I DNA and RNA helicases [DNA repl 89.0
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 88.97
PHA03372668 DNA packaging terminase subunit 1; Provisional 88.86
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 88.85
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 88.78
PF05707193 Zot: Zonular occludens toxin (Zot); InterPro: IPR0 88.57
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 88.46
PRK08058329 DNA polymerase III subunit delta'; Validated 88.45
cd00983325 recA RecA is a bacterial enzyme which has roles in 88.35
PRK04841 903 transcriptional regulator MalT; Provisional 88.34
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 88.26
TIGR02012321 tigrfam_recA protein RecA. This model describes or 88.13
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 87.61
TIGR02524358 dot_icm_DotB Dot/Icm secretion system ATPase DotB. 87.55
COG0513 513 SrmB Superfamily II DNA and RNA helicases [DNA rep 87.51
TIGR02237209 recomb_radB DNA repair and recombination protein R 87.47
COG2255332 RuvB Holliday junction resolvasome, helicase subun 87.42
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 87.34
COG1200677 RecG RecG-like helicase [DNA replication, recombin 87.33
COG0552340 FtsY Signal recognition particle GTPase [Intracell 87.28
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 87.26
TIGR00767415 rho transcription termination factor Rho. Members 87.21
cd01394218 radB RadB. The archaeal protein radB shares simila 87.04
PRK08506472 replicative DNA helicase; Provisional 86.98
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 86.96
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 86.8
PF02534469 T4SS-DNA_transf: Type IV secretory system Conjugat 86.79
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 86.79
cd01126384 TraG_VirD4 The TraG/TraD/VirD4 family are bacteria 86.77
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 86.77
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 86.71
TIGR02688449 conserved hypothetical protein TIGR02688. Members 86.61
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 86.42
TIGR00763775 lon ATP-dependent protease La. This protein is ind 86.37
PRK03992389 proteasome-activating nucleotidase; Provisional 86.27
PRK09376416 rho transcription termination factor Rho; Provisio 86.27
CHL00176638 ftsH cell division protein; Validated 86.12
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 86.1
PRK13764602 ATPase; Provisional 86.07
COG1132567 MdlB ABC-type multidrug transport system, ATPase a 86.04
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 85.94
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 85.91
KOG2543438 consensus Origin recognition complex, subunit 5 [R 85.81
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 85.75
KOG2170344 consensus ATPase of the AAA+ superfamily [General 85.74
PRK08760476 replicative DNA helicase; Provisional 85.66
TIGR00602637 rad24 checkpoint protein rad24. This family is bas 85.56
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 85.34
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 85.3
PRK13897606 type IV secretion system component VirD4; Provisio 85.2
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 85.19
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 85.09
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 85.02
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 84.93
PRK09361225 radB DNA repair and recombination protein RadB; Pr 84.87
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 84.74
PRK07413382 hypothetical protein; Validated 84.72
PHA00350399 putative assembly protein 84.7
PRK08006471 replicative DNA helicase; Provisional 84.61
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 84.43
cd03240204 ABC_Rad50 The catalytic domains of Rad50 are simil 84.38
PRK08840464 replicative DNA helicase; Provisional 84.38
PRK102631355 DNA translocase FtsK; Provisional 84.32
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=7e-76  Score=639.41  Aligned_cols=382  Identities=59%  Similarity=0.996  Sum_probs=362.9

Q ss_pred             CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhh--ccCCCCCCCEEEEE
Q 005313          175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKR--CRNDPRLGPTVLVL  252 (703)
Q Consensus       175 sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~--~~~~~~~g~~vLIl  252 (703)
                      .|.+++|++++.+.++..+|..|||||++.||.++.|+|+|.+|.||||||++|+||++.++..  .......+|++|||
T Consensus        92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL  171 (519)
T KOG0331|consen   92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL  171 (519)
T ss_pred             hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence            4556677788888888999999999999999999999999999999999999999999999986  33344558999999


Q ss_pred             cCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccEEEeccccc
Q 005313          253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM  332 (703)
Q Consensus       253 ~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~IViDEaH~m  332 (703)
                      +||||||.|+.+++.++...+.++++|++|+.++..|++.+.++++|+|+||++|+++++.+.+.+.++.|+||||||+|
T Consensus       172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM  251 (519)
T KOG0331|consen  172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM  251 (519)
T ss_pred             cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCChHHHHHHHHHc-CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccceEEEEEeccchhHHHHHH
Q 005313          333 LDMGFEPQIRKIVKEV-PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ  411 (703)
Q Consensus       333 l~~gf~~~i~~il~~l-~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~  411 (703)
                      ++|+|++++++|+..+ ++.+|+||+|||||.+++.++.+|+.+++.+.+...+++..+..+.|.++.+....|...|..
T Consensus       252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~  331 (519)
T KOG0331|consen  252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK  331 (519)
T ss_pred             hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence            9999999999999999 667799999999999999999999999999999988888999999999999999999999999


Q ss_pred             HHHhcC--CCCeEEEEcCCHHHHHHHHHHHhc-CCceeEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCcc
Q 005313          412 ILRSQE--PGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR  488 (703)
Q Consensus       412 ll~~~~--~~~kvLVF~~s~~~a~~la~~L~~-~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILVaTdv~~~GIDIp~v~  488 (703)
                      +|....  .+.|+||||+|++.|+.|+..|.+ .+++.+|||+.+|.+|+.+|+.|++|+++||||||+++||||||+|+
T Consensus       332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~  411 (519)
T KOG0331|consen  332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD  411 (519)
T ss_pred             HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc
Confidence            998874  567999999999999999999997 58999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEecCChHHHHHHHHHHHhccCcccHHHHHHHHcCC
Q 005313          489 VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGG  556 (703)
Q Consensus       489 ~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~~~d~~~~~~l~~~l~~~~~~v~~~L~~la~r~~  556 (703)
                      +|||||+|.++++|+||+|||||+++.|.+++|++..+...+..+++++++..|.++..|.+++...+
T Consensus       412 lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~  479 (519)
T KOG0331|consen  412 LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSG  479 (519)
T ss_pred             EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999987654

>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>smart00456 WW Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging [] Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2 Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG4626 Phage terminase-like protein, large subunit [General function prediction only] Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>COG1485 Predicted ATPase [General function prediction only] Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>KOG1891 consensus Proline binding protein WW45 [General function prediction only] Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms Back     alignment and domain information
>PHA00012 I assembly protein Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 Back     alignment and domain information
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13764 ATPase; Provisional Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13897 type IV secretion system component VirD4; Provisional Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>PRK07413 hypothetical protein; Validated Back     alignment and domain information
>PHA00350 putative assembly protein Back     alignment and domain information
>PRK08006 replicative DNA helicase; Provisional Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK10263 DNA translocase FtsK; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query703
2i4i_A417 Crystal Structure Of Human Dead-Box Rna Helicase Dd 2e-82
2db3_A434 Structural Basis For Rna Unwinding By The Dead-Box 3e-76
3fe2_A242 Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D 1e-70
4a4d_A253 Crystal Structure Of The N-Terminal Domain Of The H 3e-70
3iuy_A228 Crystal Structure Of Ddx53 Dead-Box Domain Length = 1e-53
2j0q_A410 The Crystal Structure Of The Exon Junction Complex 5e-53
2xb2_A411 Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar 5e-53
2hyi_C413 Structure Of The Human Exon Junction Complex With A 5e-53
2hxy_A391 Crystal Structure Of Human Apo-Eif4aiii Length = 39 7e-53
2j0u_A374 The Crystal Structure Of Eif4aiii-Barentsz Complex 2e-52
2j0u_B374 The Crystal Structure Of Eif4aiii-Barentsz Complex 2e-51
1s2m_A400 Crystal Structure Of The Dead Box Protein Dhh1p Len 6e-50
1hv8_A367 Crystal Structure Of A Dead Box Protein From The Hy 5e-49
1wrb_A253 Crystal Structure Of The N-Terminal Reca-Like Domai 2e-48
3eiq_A414 Crystal Structure Of Pdcd4-eif4a Length = 414 4e-48
2zu6_A388 Crystal Structure Of The Eif4a-Pdcd4 Complex Length 1e-47
2vso_A395 Crystal Structure Of A Translation Initiation Compl 3e-47
1fuu_A394 Yeast Initiation Factor 4a Length = 394 5e-45
2z0m_A337 Crystal Structure Of Hypothetical Atp-Dependent Rna 7e-44
1xtk_A390 Structure Of Decd To Dead Mutation Of Human Uap56 L 3e-42
1xtj_A386 Structure Of Human Uap56 In Complex With Adp Length 7e-42
1xti_A391 Structure Of Wildtype Human Uap56 Length = 391 7e-42
3pew_A395 S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 2e-41
3pey_A395 S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length 2e-41
2gxq_A207 Hera N-Terminal Domain In Complex With Amp, Crystal 3e-38
3mwj_A207 Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap 7e-38
3sqw_A579 Structure Of Mss116p (Nte Deletion) Bound To Ssrna 2e-36
3i5x_A563 Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len 5e-36
3sqx_A512 Structure Of Mss116p (Nte And C-Tail Double Deletio 1e-35
3fho_B508 Structure Of S. Pombe Dbp5 Length = 508 7e-33
3ly5_A262 Ddx18 Dead-Domain Length = 262 2e-32
3ber_A249 Human Dead-Box Rna-Helicase Ddx47, Conserved Domain 6e-32
3ews_A445 Human Dead-Box Rna-Helicase Ddx19 In Complex With A 9e-31
3fht_A412 Crystal Structure Of Human Dbp5 In Complex With Amp 9e-31
3g0h_A424 Human Dead-box Rna Helicase Ddx19, In Complex With 1e-30
3fmp_B479 Crystal Structure Of The Nucleoporin Nup214 In Comp 1e-30
2jgn_A185 Ddx3 Helicase Domain Length = 185 8e-30
2pl3_A236 Human Dead-Box Rna Helicase Ddx10, Dead Domain In C 9e-29
1vec_A206 Crystal Structure Of The N-Terminal Domain Of RckP5 1e-27
3dkp_A245 Human Dead-Box Rna-Helicase Ddx52, Conserved Domain 9e-27
1qva_A223 Yeast Initiation Factor 4a N-Terminal Domain Length 1e-24
1qde_A224 Crystal Structure Of The Atpase Domain Of Translati 2e-24
1q0u_A219 Crystal Structure Of The Bstdead N-Terminal Domain 2e-24
3bor_A237 Crystal Structure Of The Deadc Domain Of Human Tran 8e-24
1t6n_A220 Crystal Structure Of The N-Terminal Domain Of Human 1e-23
2g9n_A221 Structure Of The Dead Domain Of Human Eukaryotic In 4e-23
2oxc_A230 Human Dead-Box Rna Helicase Ddx20, Dead Domain In C 6e-20
2kbe_A226 Solution Structure Of Amino-Terminal Domain Of Dbp5 6e-20
2p6n_A191 Human Dead-box Rna Helicase Ddx41, Helicase Domain 2e-19
1fuk_A165 Crystal Structure Of The Carboxy Terminal Domain Of 3e-18
2hjv_A163 Structure Of The Second Domain (Residues 207-368) O 4e-17
3peu_A188 S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To 1e-14
3gfp_A189 Structure Of The C-Terminal Domain Of The Dead-Box 2e-14
3fhc_B235 Crystal Structure Of Human Dbp5 In Complex With Nup 2e-14
2kbf_A187 Solution Structure Of Carboxyl-Terminal Domain Of D 3e-14
3fmo_B300 Crystal Structure Of The Nucleoporin Nup214 In Comp 3e-14
3i32_A300 Dimeric Structure Of A Hera Helicase Fragment Inclu 5e-14
3eaq_A212 Novel Dimerization Motif In The Dead Box Rna Helica 7e-14
1t5i_A172 Crystal Structure Of The C-Terminal Domain Of Uap56 4e-13
2wax_A193 Structure Of The Human Ddx6 C-Terminal Domain In Co 1e-12
2yjt_D170 Crystal Structure Of E. Coli Dead-Box Protein Srmb 2e-10
2rb4_A175 Crystal Structure Of The Helicase Domain Of Human D 4e-10
1oyy_A523 Structure Of The Recq Catalytic Core Bound To Atp-G 2e-09
1oyw_A523 Structure Of The Recq Catalytic Core Length = 523 2e-09
4db4_A256 Mss116p Dead-Box Helicase Domain 2 Bound To A Chima 2e-08
4db2_C257 Mss116p Dead-Box Helicase Domain 2 Bound To An Rna 2e-08
4db2_A257 Mss116p Dead-Box Helicase Domain 2 Bound To An Rna 2e-08
1wp9_A494 Crystal Structure Of Pyrococcus Furiosus Hef Helica 6e-07
1gm5_A780 Structure Of Recg Bound To Three-Way Dna Junction L 1e-05
4gl2_A699 Structural Basis For Dsrna Duplex Backbone Recognit 2e-05
4i1s_A243 Melanoma Differentiation Associated Protein-5 Helic 2e-04
2v1x_A591 Crystal Structure Of Human Recq-Like Dna Helicase L 3e-04
2fwr_A472 Structure Of Archaeoglobus Fulgidis Xpb Length = 47 3e-04
2fzl_A219 Structure Of C-Terminal Domain Of Archaeoglobus Ful 4e-04
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 Back     alignment and structure 
Iteration: 1

 Score =  303 bits (777), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 169/410 (41%), Positives = 248/410 (60%), Gaps = 21/410 (5%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
           V  +G+  PP   SF        ++  +    ++ PTP+Q  + PI  + RD++A A+TG
Sbjct: 3   VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 222 SGKTLGYLLPGFIH---------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
           SGKT  +LLP             L+  + + R G     P  LVL+PTRELA QI +EA 
Sbjct: 63  SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
           KF   SR+    +YGGA  G Q++D++RG  ++VATPGRL D++E  +I L+   YLVLD
Sbjct: 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 182
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
           EADRMLDMGFEPQIR+IV++  +P +  R T+M++AT+P+E++ +A D L   + + +G 
Sbjct: 183 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
           V   + N  ITQ +  +   DK   L  +L +    S  +VF  TKK  D L   L  + 
Sbjct: 243 VGSTSEN--ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 300
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
           +   +IHGD+SQ +R+  L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 301 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 360
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA 552
           VHRI          +A +FF +++     DL+ LL  AKQ+VP  L +MA
Sbjct: 361 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 410
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 Back     alignment and structure
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 Back     alignment and structure
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 Back     alignment and structure
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 Back     alignment and structure
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 Back     alignment and structure
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 Back     alignment and structure
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 Back     alignment and structure
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 Back     alignment and structure
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 Back     alignment and structure
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 Back     alignment and structure
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 Back     alignment and structure
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 Back     alignment and structure
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 Back     alignment and structure
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 Back     alignment and structure
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 Back     alignment and structure
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 Back     alignment and structure
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 Back     alignment and structure
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 Back     alignment and structure
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 Back     alignment and structure
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 Back     alignment and structure
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 Back     alignment and structure
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 Back     alignment and structure
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 Back     alignment and structure
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 Back     alignment and structure
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 Back     alignment and structure
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 Back     alignment and structure
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 Back     alignment and structure
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 Back     alignment and structure
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 Back     alignment and structure
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 Back     alignment and structure
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 Back     alignment and structure
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 Back     alignment and structure
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 Back     alignment and structure
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 Back     alignment and structure
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 Back     alignment and structure
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 Back     alignment and structure
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 Back     alignment and structure
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 Back     alignment and structure
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 Back     alignment and structure
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 Back     alignment and structure
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 Back     alignment and structure
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 Back     alignment and structure
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 Back     alignment and structure
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 Back     alignment and structure
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 Back     alignment and structure
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 Back     alignment and structure
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 Back     alignment and structure
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 Back     alignment and structure
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 Back     alignment and structure
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 Back     alignment and structure
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 Back     alignment and structure
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 Back     alignment and structure
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 Back     alignment and structure
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 Back     alignment and structure
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 Back     alignment and structure
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 Back     alignment and structure
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 Back     alignment and structure
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 Back     alignment and structure
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 Back     alignment and structure
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 Back     alignment and structure
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 Back     alignment and structure
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 Back     alignment and structure
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 Back     alignment and structure
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 Back     alignment and structure
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction Length = 780 Back     alignment and structure
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 Length = 699 Back     alignment and structure
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase Domain Complex With Inhibitor Non-structural Protein V Length = 243 Back     alignment and structure
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 Back     alignment and structure
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb Length = 472 Back     alignment and structure
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus Xpb Length = 219 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query703
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 100.0
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 100.0
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 100.0
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 100.0
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 100.0
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
1tf5_A 844 Preprotein translocase SECA subunit; ATPase, helic 100.0
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 100.0
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 100.0
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 100.0
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 100.0
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 100.0
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 100.0
1yks_A440 Genome polyprotein [contains: flavivirin protease 100.0
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 100.0
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 100.0
3h1t_A590 Type I site-specific restriction-modification syst 100.0
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 100.0
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 100.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 100.0
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 100.0
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 100.0
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 100.0
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 100.0
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 100.0
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 100.0
3bor_A237 Human initiation factor 4A-II; translation initiat 100.0
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 100.0
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 100.0
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 100.0
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 100.0
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 100.0
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 100.0
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 100.0
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 100.0
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 100.0
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 100.0
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.98
2w00_A 1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.97
3jux_A822 Protein translocase subunit SECA; protein transloc 99.97
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.94
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.94
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.94
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.94
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.93
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.92
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.91
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.91
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.91
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.9
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.89
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.88
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.88
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.86
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.77
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 99.85
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 99.84
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.79
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 99.77
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.73
2e45_A55 Fe65 protein, amyloid beta A4 precursor protein-bi 98.88
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 98.85
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 98.75
2jv4_A54 Peptidyl-prolyl CIS/trans isomerase; ppiase domain 98.6
2ho2_A38 Fe65 protein, amyloid beta A4 protein-binding fami 98.57
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 98.55
2ysc_A39 Amyloid beta A4 precursor protein-binding family B 98.46
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} 98.41
2jx8_A52 Hpcif1, phosphorylated CTD-interacting factor 1; p 98.4
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 98.39
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 98.37
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 98.31
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 98.31
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 98.31
1ymz_A43 CC45; artificial protein, computational design, un 98.29
2law_A38 Yorkie homolog; YAP, SMAD1, CDK, signal transducti 98.25
2ysf_A40 E3 ubiquitin-protein ligase itchy homolog; AIP4, N 98.24
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 98.23
2ez5_W46 Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma 98.22
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 98.2
2zaj_A49 Membrane-associated guanylate kinase, WW and PDZ d 98.19
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 98.15
3lfu_A 647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 98.14
2kpz_A49 E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV 98.14
1i5h_W50 Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, 98.14
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 98.1
2l4j_A46 YES-associated protein 2 (YAP2); WW domain, medaka 98.09
2yse_A60 Membrane-associated guanylate kinase, WW and PDZ d 98.07
2djy_A42 SMAD ubiquitination regulatory factor 2; beta shee 98.04
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 98.04
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 98.02
2jmf_A53 E3 ubiquitin-protein ligase suppressor of deltex; 97.96
1e0n_A27 Hypothetical protein; YJQ8WW domain, WW domain, sa 97.96
2dwv_A49 Salvador homolog 1 protein; WW domain, dimer, stru 97.91
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 97.89
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 97.86
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 97.84
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 97.78
1wmv_A54 WWOX, WW domain containing oxidoreductase; all-bet 97.74
2ysd_A57 Membrane-associated guanylate kinase, WW and PDZ d 97.68
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 97.66
1jmq_A46 YAP65, 65 kDa YES-associated protein; polyproline 97.6
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 97.6
3tc5_A166 Peptidyl-prolyl CIS-trans isomerase NIMA-interact; 97.51
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 97.37
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 97.23
2jxw_A75 WW domain-binding protein 4; WW domain containing 97.2
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 97.02
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 97.0
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 96.91
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 96.91
3l4h_A109 E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d 96.89
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 96.89
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 96.86
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 96.84
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 96.82
1pjr_A 724 PCRA; DNA repair, DNA replication, SOS response, h 96.66
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 96.61
1uaa_A 673 REP helicase, protein (ATP-dependent DNA helicase 96.54
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 96.38
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 96.31
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 96.19
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 96.18
2kjq_A149 DNAA-related protein; solution structure, NESG, st 95.99
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 95.99
2zpa_A671 Uncharacterized protein YPFI; RNA modification enz 95.96
2jxw_A75 WW domain-binding protein 4; WW domain containing 95.9
2v1u_A387 Cell division control protein 6 homolog; DNA repli 95.54
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 95.52
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 95.47
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 95.39
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 95.26
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 95.25
2dk7_A73 Transcription elongation regulator 1; structural g 95.21
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 95.18
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 95.17
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 95.14
1yw5_A177 Peptidyl prolyl CIS/trans isomerase; WW-domain, pp 95.11
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 95.09
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 95.06
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 94.99
2chg_A226 Replication factor C small subunit; DNA-binding pr 94.97
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 94.97
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 94.93
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 94.91
3bos_A242 Putative DNA replication factor; P-loop containing 94.71
2qgz_A308 Helicase loader, putative primosome component; str 94.7
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 94.5
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 94.49
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 94.47
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 94.41
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 94.16
3co5_A143 Putative two-component system transcriptional RES 94.12
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 93.92
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 93.75
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 93.65
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 93.53
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 93.44
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 93.41
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 93.34
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 93.19
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 93.15
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 92.83
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 92.77
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 92.61
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 92.33
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 92.26
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 92.25
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 92.16
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 91.93
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 91.91
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 91.76
2fna_A357 Conserved hypothetical protein; structural genomic 91.61
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 91.58
2gno_A305 DNA polymerase III, gamma subunit-related protein; 91.33
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 91.18
3pvs_A447 Replication-associated recombination protein A; ma 90.68
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 90.63
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 90.59
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 90.27
1eg3_A261 Dystrophin; EF-hand like domain, WW domain, struct 90.13
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 90.09
2r6a_A454 DNAB helicase, replicative helicase; replication, 89.91
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 89.83
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 89.79
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 89.72
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 89.71
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 89.63
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 89.54
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 89.5
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 89.38
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 89.34
1ub1_A133 MECP2, attachment region binding protein; chicken 89.23
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 89.01
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 88.99
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 88.55
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 88.37
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 88.19
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 88.11
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 87.94
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 87.86
1xp8_A366 RECA protein, recombinase A; recombination, radior 87.69
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 87.53
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 87.5
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 87.37
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 87.35
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 87.11
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 87.05
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 86.83
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 86.21
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 86.2
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 85.89
2chq_A319 Replication factor C small subunit; DNA-binding pr 85.71
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 85.68
2iut_A574 DNA translocase FTSK; nucleotide-binding, chromoso 85.55
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 85.45
3hjh_A483 Transcription-repair-coupling factor; MFD, mutatio 85.19
2z43_A324 DNA repair and recombination protein RADA; archaea 85.02
2cvh_A220 DNA repair and recombination protein RADB; filamen 84.95
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 84.8
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 84.8
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 84.1
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 83.77
1vma_A306 Cell division protein FTSY; TM0570, structural gen 83.71
1u94_A356 RECA protein, recombinase A; homologous recombinat 83.36
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 82.39
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 81.8
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 81.06
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 80.89
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 80.67
2j37_W504 Signal recognition particle 54 kDa protein (SRP54) 80.56
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 80.53
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 80.47
3u4q_B 1166 ATP-dependent helicase/deoxyribonuclease subunit; 80.36
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 80.19
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 80.16
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=1.1e-62  Score=548.50  Aligned_cols=390  Identities=43%  Similarity=0.686  Sum_probs=355.0

Q ss_pred             hcCCeEEcCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHh
Q 005313          158 RRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK  237 (703)
Q Consensus       158 ~~~~i~~~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~  237 (703)
                      ....+++.+...|.|+.+|++++|++.++++|.+.||..|+|+|+++|+.+++++|++++|+||+|||++|++|++..+.
T Consensus        40 ~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~  119 (434)
T 2db3_A           40 NNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLL  119 (434)
T ss_dssp             GGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hccC-CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccc
Q 005313          238 RCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI  316 (703)
Q Consensus       238 ~~~~-~~~~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~  316 (703)
                      .... ....++++|||+||++|+.|+++++++++...++++.+++|+.....+...+..+++|+|+||++|.+++....+
T Consensus       120 ~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~  199 (434)
T 2db3_A          120 EDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFI  199 (434)
T ss_dssp             HSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSC
T ss_pred             hcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCc
Confidence            6432 123467999999999999999999999999888999999999988778888888999999999999999998888


Q ss_pred             cccCcccEEEecccccccCCChHHHHHHHHHc--CCCceEEEEeccCcHHHHHHHHHhhcCceecccccchhhhccccce
Q 005313          317 SLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV--PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAIT  394 (703)
Q Consensus       317 ~l~~~~~IViDEaH~ml~~gf~~~i~~il~~l--~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~~~~~~~~~~~i~  394 (703)
                      .+.++++|||||||+|++++|...+..++..+  ++.+|+|+||||+++.+..++..++.++..+.+....  .....+.
T Consensus       200 ~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~--~~~~~i~  277 (434)
T 2db3_A          200 TFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG--GACSDVK  277 (434)
T ss_dssp             CCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT--CCCTTEE
T ss_pred             ccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc--ccccccc
Confidence            89999999999999999999999999999885  6789999999999999999999999988887765433  2344577


Q ss_pred             EEEEEeccchhHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHh-cCCceeEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 005313          395 QHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLV  473 (703)
Q Consensus       395 ~~~~~~~~~~k~~~L~~ll~~~~~~~kvLVF~~s~~~a~~la~~L~-~~~~~~~lhg~~~~~eR~~vl~~F~~G~~~ILV  473 (703)
                      +.+..+....|...|.+++.....  ++||||++++.|+.+++.|. ..+.+..+||++++.+|+.+++.|++|+++|||
T Consensus       278 ~~~~~~~~~~k~~~l~~~l~~~~~--~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLv  355 (434)
T 2db3_A          278 QTIYEVNKYAKRSKLIEILSEQAD--GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLI  355 (434)
T ss_dssp             EEEEECCGGGHHHHHHHHHHHCCT--TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEE
T ss_pred             eEEEEeCcHHHHHHHHHHHHhCCC--CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence            788888888899999999987654  49999999999999999998 468899999999999999999999999999999


Q ss_pred             EcccccccCCCCCccEEEEecCCCCHHHHHHHHhccCCCCCccEEEEEEe-cCChHHHHHHHHHHHhccCcccHHHHHH
Q 005313          474 ATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDM  551 (703)
Q Consensus       474 aTdv~~~GIDIp~v~~VI~~d~P~s~~~yiQriGRagR~G~~g~~i~~~~-~~d~~~~~~l~~~l~~~~~~v~~~L~~l  551 (703)
                      ||+++++|||+|++++||+||+|.++++|+||+||+||.|+.|.+++|++ ..+...+..+.++|+...+.+|.+|.+|
T Consensus       356 aT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~  434 (434)
T 2db3_A          356 ATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC  434 (434)
T ss_dssp             ECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred             EchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence            99999999999999999999999999999999999999999999999999 5578889999999999999999998764
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Back     alignment and structure
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Back     alignment and structure
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Back     alignment and structure
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Back     alignment and structure
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Back     alignment and structure
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Back     alignment and structure
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Back     alignment and structure
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Back     alignment and structure
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 Back     alignment and structure
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Back     alignment and structure
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Back     alignment and structure
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3 Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B* Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 703
d1hv8a1208 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase 3e-60
d1wrba1238 c.37.1.19 (A:164-401) putative ATP-dependent RNA h 2e-54
d2j0sa1222 c.37.1.19 (A:22-243) Probable ATP-dependent RNA he 6e-52
d2g9na1218 c.37.1.19 (A:21-238) Initiation factor 4a {Human ( 3e-51
d1qdea_212 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 2e-50
d1t6na_207 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 2e-46
d1veca_206 c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma 1e-43
d1s2ma1206 c.37.1.19 (A:46-251) Putative ATP-dependent RNA he 3e-42
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 5e-42
d1q0ua_209 c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR 1e-40
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 1e-38
d1a1va2299 c.37.1.14 (A:326-624) HCV helicase domain {Human h 7e-33
d1gkub2248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 1e-32
d1fuka_162 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 2e-32
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 1e-31
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 4e-29
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 1e-28
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 1e-27
d2j0sa2168 c.37.1.19 (A:244-411) Probable ATP-dependent RNA h 2e-27
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 1e-21
d2rb4a1168 c.37.1.19 (A:307-474) ATP-dependent RNA helicase D 4e-21
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 8e-20
d1oywa3200 c.37.1.19 (A:207-406) RecQ helicase domain {Escher 9e-20
d1s2ma2171 c.37.1.19 (A:252-422) Putative ATP-dependent RNA h 2e-19
d1t5ia_168 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 7e-19
d1jr6a_138 c.37.1.14 (A:) HCV helicase domain {Human hepatiti 8e-19
d1t5la2181 c.37.1.19 (A:415-595) Nucleotide excision repair e 5e-17
d1c4oa2174 c.37.1.19 (A:410-583) Nucleotide excision repair e 1e-16
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 3e-16
d1gm5a4206 c.37.1.19 (A:550-755) RecG helicase domain {Thermo 2e-10
d1yksa2299 c.37.1.14 (A:325-623) YFV helicase domain {Yellow 8e-08
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 3e-06
d1tf5a4175 c.37.1.19 (A:396-570) Translocation ATPase SecA, n 5e-06
d1pina134 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho 6e-06
d1jmqa_46 b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens 2e-04
d2rm0w137 b.72.1.1 (W:1-37) Formin binding protein FBP28 dom 9e-04
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 0.003
d1i5hw_50 b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain 0.004
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  199 bits (506), Expect = 3e-60
 Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 7/210 (3%)

Query: 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSR-DIVAIAKTGSGKTLGYLLP 231
           +M+F+       +L  + N GF  PT IQ +  P+ L    +IVA A+TGSGKT  + +P
Sbjct: 3   YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIP 62

Query: 232 GFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291
               +         G   ++L+PTRELA Q+ DE      +  +    +YGG    PQ+K
Sbjct: 63  LIELVNENN-----GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIK 117

Query: 292 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 351
            + +  +IVV TPGR+ D +    ++L  V Y +LDEAD ML+MGF   + KI+      
Sbjct: 118 AL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKD 176

Query: 352 RQTLMYTATWPREVRKIAADLLVNPVQVNI 381
           ++ L+++AT PRE+  +A   + +   +  
Sbjct: 177 KRILLFSATMPREILNLAKKYMGDYSFIKA 206
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Length = 206 Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46 Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query703
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 100.0
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 100.0
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 100.0
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 100.0
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 100.0
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 100.0
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 100.0
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 100.0
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 100.0
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.97
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.94
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.94
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.94
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.93
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.92
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.92
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.92
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.92
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.92
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.92
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.89
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.88
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.87
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.78
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.78
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.77
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.76
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.74
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.73
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.73
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.72
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.7
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.69
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.68
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.67
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.62
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.58
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.48
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.44
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.42
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.33
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.13
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.98
d1pina134 Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId 98.92
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 98.65
d1jmqa_46 Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 98.58
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 98.41
d1i5hw_50 Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n 98.28
d2jmfa133 Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr 98.22
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 98.21
d1tk7a145 Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso 98.19
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 98.12
d2rm0w137 Formin binding protein FBP28 domain {Domestic mous 98.09
d2ho2a133 Amyloid beta A4 precursor protein-binding family B 97.74
d1o6wa129 Splicing factor prp40 {Baker's yeast (Saccharomyce 97.69
d1ywia128 Huntingtin-interacting protein HYPA/FBP11 {Human ( 97.68
d2dk1a138 WW domain-binding protein 4, WBP4 {Human (Homo sap 97.55
d1o6wa246 Splicing factor prp40 {Baker's yeast (Saccharomyce 97.34
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 97.27
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 96.85
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 96.69
g1qhh.1 623 DEXX box DNA helicase {Bacillus stearothermophilus 96.51
d1ls1a2207 GTPase domain of the signal sequence recognition p 96.4
d2ysca126 Amyloid beta A4 precursor protein-binding family B 96.25
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 96.16
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 96.15
d2qy9a2211 GTPase domain of the signal recognition particle r 95.82
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 95.72
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 95.62
d1j8yf2211 GTPase domain of the signal sequence recognition p 95.2
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 95.03
d1vmaa2213 GTPase domain of the signal recognition particle r 94.9
d1okkd2207 GTPase domain of the signal recognition particle r 94.76
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 94.73
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 94.69
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 94.41
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 93.72
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 93.69
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 93.62
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 93.56
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 92.97
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 92.6
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 92.46
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 92.44
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 91.6
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 91.4
d1g5ta_157 ATP:corrinoid adenosyltransferase CobA {Salmonella 91.08
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 90.65
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 90.46
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 89.82
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 89.74
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 89.72
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 89.42
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 88.95
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 88.87
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 88.46
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 88.31
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 85.46
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 85.14
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 84.97
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 82.66
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 82.49
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 81.9
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 80.99
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=326.61  Aligned_cols=214  Identities=30%  Similarity=0.555  Sum_probs=198.0

Q ss_pred             cCCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHHhhccCCCC
Q 005313          165 SGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPR  244 (703)
Q Consensus       165 ~~~~~p~p~~sf~~~~l~~~l~~~l~~~g~~~p~piQ~~ai~~il~grdvlv~ApTGsGKTla~llp~l~~l~~~~~~~~  244 (703)
                      +..+..+...+|++++|+++++++|.+.||..|||+|+++||.+++++|++++|+||||||++|++|++..+....    
T Consensus         8 ~~~~~~~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~~----   83 (222)
T d2j0sa1           8 ETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV----   83 (222)
T ss_dssp             CCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS----
T ss_pred             ccCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccccc----
Confidence            3334445667999999999999999999999999999999999999999999999999999999999998875432    


Q ss_pred             CCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEeeCCCCCCchhhhhcCCCcEEEECHHHHHHHHHhccccccCcccE
Q 005313          245 LGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYL  324 (703)
Q Consensus       245 ~g~~vLIl~PtreLa~Q~~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~g~dIlV~Tp~~L~~~l~~~~~~l~~~~~I  324 (703)
                      ..+++||++||+||+.|+++.++++....++++.+++|+.....+...+..+++|+|+||++|.+++....+.++++++|
T Consensus        84 ~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~l  163 (222)
T d2j0sa1          84 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKML  163 (222)
T ss_dssp             CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred             cCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceee
Confidence            34689999999999999999999999999999999999998888888888899999999999999999999999999999


Q ss_pred             EEecccccccCCChHHHHHHHHHcCCCceEEEEeccCcHHHHHHHHHhhcCceecccc
Q 005313          325 VLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG  382 (703)
Q Consensus       325 ViDEaH~ml~~gf~~~i~~il~~l~~~~q~L~lSAT~p~~v~~l~~~~l~~~~~i~i~  382 (703)
                      ||||||+|++.+|...+..|+..+++.+|++++|||+++++.++++.++.+|+.+.++
T Consensus       164 VlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V~  221 (222)
T d2j0sa1         164 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK  221 (222)
T ss_dssp             EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred             eecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEEe
Confidence            9999999999999999999999999999999999999999999999999999888764
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure