Citrus Sinensis ID: 005334
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 701 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | yes | no | 0.985 | 0.912 | 0.649 | 0.0 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.975 | 0.882 | 0.415 | 1e-150 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.934 | 0.896 | 0.400 | 1e-128 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.944 | 0.883 | 0.385 | 1e-120 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.620 | 0.539 | 0.259 | 1e-25 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.666 | 0.245 | 0.229 | 5e-08 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | yes | no | 0.512 | 0.307 | 0.235 | 9e-08 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.517 | 0.310 | 0.240 | 2e-07 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.517 | 0.310 | 0.240 | 2e-07 | |
| E4UPZ4 | 481 | Subtilisin-like protease | N/A | no | 0.375 | 0.546 | 0.262 | 2e-07 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/727 (64%), Positives = 560/727 (77%), Gaps = 36/727 (4%)
Query: 1 MPATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPE 60
MP++F+ H WYDSSL+S+S SA +LYTY+N IHGFSTRLT +EA+SL QPG++SVLPE
Sbjct: 41 MPSSFDLHSNWYDSSLRSISDSAELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPE 100
Query: 61 VRYELHTTRTPEFLGLGK-SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRG 119
RYELHTTRTP FLGL + + LFP + S+V+VGVLDTGVWPE KS+ D G GP+P
Sbjct: 101 HRYELHTTRTPLFLGLDEHTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSS 160
Query: 120 WKG------------------------VWYEEAVGPIDETAESKSPRDDDGHGTHTSTTA 155
WKG YE +GPIDE+ ES+SPRDDDGHGTHTS+TA
Sbjct: 161 WKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTA 220
Query: 156 AGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSM 215
AGSVV GASL G+ASGTARGMA +ARVA YKVCWL GCF SDILA +DKAI D VNV+SM
Sbjct: 221 AGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSM 280
Query: 216 SIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRN 275
S+GGG++DYYRD VAIGAF AM +GI VSCSAGN GP ++S+SNVAPWITTVGAGTLDR+
Sbjct: 281 SLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRD 340
Query: 276 FPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKI 335
FP LGNGK+F+GVSL+ L ++P + A N S+ ++GNLCMTG+LIP KV GKI
Sbjct: 341 FPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKI 400
Query: 336 VVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNY 395
V+CDRG N+RV+KG VK AGGVGMIL NT + GEELVADA LLP+ VGEKAGD I++Y
Sbjct: 401 VMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHY 460
Query: 396 ISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGA 455
+++DP P A+I GT +G++PSPVVAAFSSRGPN ITP ILKPDLIAPGVNILA WTGA
Sbjct: 461 VTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGA 520
Query: 456 VGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNG 515
GPTGL SD R V FNIISGTSMSCPHVSGLAALLK+ HPEWSP+AI+SALMTTAY T
Sbjct: 521 AGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYK 580
Query: 516 NGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQA 575
+GK LLDI+TG+PSTPFD GAGHV P A +PGL+YD T +DYL FLCAL+Y+S QI+
Sbjct: 581 DGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSV 640
Query: 576 TNRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMV 635
+ R++ C SK+YS+ D+NYPSF+V + GVGA KYTRT+T+VG TY V
Sbjct: 641 SRRNYTCDPSKSYSVADLNYPSFAVNVD-------GVGA---YKYTRTVTSVGGAGTYSV 690
Query: 636 SVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTA-SSMPSGTTSFARLQWSDGKHVVGS 694
V+S++T VKI VEP L+F EKKSY VTFT SS PSG+ SF ++WSDGKHVVGS
Sbjct: 691 KVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGS 750
Query: 695 PIAFSWT 701
P+A SWT
Sbjct: 751 PVAISWT 757
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 532 bits (1370), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/743 (41%), Positives = 427/743 (57%), Gaps = 59/743 (7%)
Query: 4 TFNDHFEWYDSSLKSV---------SASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGI 54
TF F+W+ S L+ S+ +LY+Y + I GF+ +LT EAE L+ P +
Sbjct: 41 TFASKFDWHLSFLQEAVLGVEEEEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEV 100
Query: 55 VSVLPEVRYELHTTRTPEFLGLGK--SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTG 112
V+V P+ ++ TT + +FLGL + ++ S I+GVLDTGVWPE SFDDTG
Sbjct: 101 VAVRPDHVLQVQTTYSYKFLGLDGFGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTG 160
Query: 113 MGPVPRGWKGVWYE-----------------------EAVGPIDET----AESKSPRDDD 145
M +PR WKG+ E +E+ E S RD
Sbjct: 161 MPSIPRKWKGICQEGESFSSSSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDST 220
Query: 146 GHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKA 205
GHGTHT++T GS V+ A++ G +G ARGMA A +A YKVCW GC+ SDILA +D A
Sbjct: 221 GHGTHTASTVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKVCWFNGCYSSDILAAIDVA 280
Query: 206 IEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWIT 265
I+D V+V+S+S+GG Y DT+AIG F AM +GI V C+AGN GP +S++N APW++
Sbjct: 281 IQDKVDVLSLSLGGFPIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVS 340
Query: 266 TVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGS 325
T+GAGTLDR FP V L NGK G SLY + + + + C+ GS
Sbjct: 341 TIGAGTLDRRFPAVVRLANGKLLYGESLYPGKGIKNAGREVEVIYVTGGDKGSEFCLRGS 400
Query: 326 LIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVG 385
L ++ GK+V+CDRG N R EKG VK+AGGV MIL NT+ EE D LLP+ +G
Sbjct: 401 LPREEIRGKMVICDRGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIG 460
Query: 386 EKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPG 445
+K Y+++ P A II GT +G +P VA FS+RGP+ P ILKPD+IAPG
Sbjct: 461 YTESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPG 520
Query: 446 VNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSA 505
VNI+A W +GPTGL D R V+F ++SGTSMSCPHVSG+ AL+++A+P WSP+AIKSA
Sbjct: 521 VNIIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSA 580
Query: 506 LMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCAL 565
LMTTA + GK + D +P+ F GAGHV+P A++PGLVY+ DY+ +LC L
Sbjct: 581 LMTTADLYDRQGKAIKD--GNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTL 638
Query: 566 DYSSFQIKQATNRDFACLSSKTYSLG-DVNYPSFSVPFETASGTWGGVGATSTVKYTRTL 624
++ I T+++ +C + G +NYPS +V F+ +T TR +
Sbjct: 639 GFTRSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGK---------TTEMITRRV 689
Query: 625 TNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSG--TTSFA 681
TNVG+P + Y V+V + +K++V P+ L F + SY V F G SFA
Sbjct: 690 TNVGSPNSIYSVNVKAPE-GIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFA 748
Query: 682 --RLQWSDGKHV---VGSPIAFS 699
+L W + ++ V SPI+ +
Sbjct: 749 QGQLTWVNSHNLMQRVRSPISVT 771
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 286/714 (40%), Positives = 397/714 (55%), Gaps = 59/714 (8%)
Query: 8 HFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYELHT 67
H + + S A ++L+TYK +GF+ +LT +EAE + G+VSV ELHT
Sbjct: 52 HRAMLEQVVGSTFAPESVLHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHT 111
Query: 68 TRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVW--- 124
TR+ +FLG T+ S+V+S ++VGVLDTG+WPE SFDD G P P WKG
Sbjct: 112 TRSWDFLGF--PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETS 169
Query: 125 ------------YEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGT 172
+G + PRD +GHGTHT++TAAG +V+ A+L+G GT
Sbjct: 170 NNFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGT 229
Query: 173 ARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGL-TDYYRDTVAI 231
ARG AR+A YKVCW GC +DILA D AI DGV+++S+S+GG Y+ D +AI
Sbjct: 230 ARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAI 289
Query: 232 GAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGV 291
G+F A+ +GI S SAGNGGP + ++++PW+ +V A T+DR F T V +GNG+SF GV
Sbjct: 290 GSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGV 349
Query: 292 SLYSRRPLSGSMVPIVDAANVSST----SSGNLCMTGSLIPAKVAGKIVVCDRG-GNSRV 346
S+ + P+V ++ +T S+ C S+ P + GKIVVC+ G
Sbjct: 350 SINT---FDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEF 406
Query: 347 EKGVEVKDAGGVGMILT-NTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMAT 405
K ++ G G+++T NT Y AD+ LPS+ + A YI S P AT
Sbjct: 407 FKSLD----GAAGVLMTSNTRDY-----ADSYPLPSSVLDPNDLLATLRYIYSIRSPGAT 457
Query: 406 IISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDK 465
I T L +PVV +FSSRGPN T +++KPD+ PGV ILA W +V P G +
Sbjct: 458 IFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWP-SVAPVG--GIR 513
Query: 466 RHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDIST 525
R+ FNIISGTSMSCPH++G+A +K +P WSP+AIKSALMTTA N +
Sbjct: 514 RNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN---------AR 564
Query: 526 GQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSS 585
P F +G+GHV+P+ A+ PGLVYDA DY+ FLC Y++ +++ T AC S
Sbjct: 565 FNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSG 624
Query: 586 KTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVSVSSQSTSVK 645
T + D+NYPSF + + T + RTLT+V + ++ S +
Sbjct: 625 NTGRVWDLNYPSFGLSVSPSQ--------TFNQYFNRTLTSVAPQASTYRAMISAPQGLT 676
Query: 646 ILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPIAFS 699
I V P LSF+ ++KS+ +T S G A L WSDG H V SPI +
Sbjct: 677 ISVNPNVLSFNGLGDRKSFTLTVRGSI--KGFVVSASLVWSDGVHYVRSPITIT 728
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust.
Identities = 278/721 (38%), Positives = 400/721 (55%), Gaps = 59/721 (8%)
Query: 4 TFNDHFEWYDS-SLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVR 62
T H S ++ A +Y+Y + F+ +L+ EA+ + + +VSV
Sbjct: 52 TIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQY 111
Query: 63 YELHTTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKG 122
+LHTT++ +F+GL + +E +VI+GVLDTG+ P+ +SF D G+GP P WKG
Sbjct: 112 RKLHTTKSWDFVGLPLTAKRHLKAE--RDVIIGVLDTGITPDSESFLDHGLGPPPAKWKG 169
Query: 123 VW--YEEAVGPIDE--------------TAESKSPRDDDGHGTHTSTTAAGSVVNGASLF 166
Y+ G ++ E +SP D DGHGTHTS+T AG +V ASL+
Sbjct: 170 SCGPYKNFTGCNNKIIGAKYFKHDGNVPAGEVRSPIDIDGHGTHTSSTVAGVLVANASLY 229
Query: 167 GFASGTARGMAAQARVATYKVCW-LAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYY 225
G A+GTARG AR+A YKVCW +GC DILAG + AI DGV ++S+SIGG + DY
Sbjct: 230 GIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISIGGPIADYS 289
Query: 226 RDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNG 285
D++++G+F AM +GI SAGN GP + +++N PWI TV A +DR F + + LGNG
Sbjct: 290 SDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNG 349
Query: 286 KSFSG--VSLYSRRPLSGSMVPIVDAA-NVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGG 342
KSFSG +S++S + S +V VDAA N C + SL KV GK++VC GG
Sbjct: 350 KSFSGMGISMFSPKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGG 409
Query: 343 NSRVEKGVE--VKDAGGVGMILTNTDSYGEELVADAQLL--PSANVGEKAGDAIKNYISS 398
GVE +K GG G I+ + ++ + +AQ+ P+ +V GD I YI+S
Sbjct: 410 G-----GVESTIKSYGGAGAIIVS-----DQYLDNAQIFMAPATSVNSSVGDIIYRYINS 459
Query: 399 DPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGP 458
A +I + Q+ I P+P VA+FSSRGPNP + +LKPD+ APG++ILA +T
Sbjct: 460 TRSASA-VIQKTRQVTI-PAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSL 517
Query: 459 TGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGK 518
TGL+ D + F I+SGTSM+CPHV+G+AA +K+ HP+W+P+AIKSA++T+A +
Sbjct: 518 TGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPIS---- 573
Query: 519 TLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNR 578
F +G G ++P A PGLVYD Y+ FLC Y++ +
Sbjct: 574 -----RRVNKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGT 628
Query: 579 DFACLSSKTYSLGD--VNYPSFSVPFETASGTWGGVGATSTVK-YTRTLTNVGTPTTYMV 635
SS LG +NYP+ + +A TST+ + R +TNVG P++
Sbjct: 629 RSVSCSSIVPGLGHDSLNYPTIQLTLRSAK--------TSTLAVFRRRVTNVGPPSSVYT 680
Query: 636 SVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSP 695
+ V+I VEP+SLSFS+ +K+S+ V A M G L W +H V SP
Sbjct: 681 ATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSP 740
Query: 696 I 696
I
Sbjct: 741 I 741
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 132/509 (25%), Positives = 221/509 (43%), Gaps = 74/509 (14%)
Query: 29 YKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYELHTTRTPE---------------- 72
Y+ V GFS +L A E L + +V P V Y+ + +
Sbjct: 106 YEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQMDDSA 165
Query: 73 -FLGLGKSETLFPTSEVQSEVIVGVLDTGV---WPEIKSFDDTGMGPVPRGWKGVWYEEA 128
++G + L T + + V ++DTGV P++K + G +KG + +
Sbjct: 166 PYIGANDAWDLGYTGK---GIKVAIIDTGVEYNHPDLKK--NFGQ------YKGYDFVDN 214
Query: 129 VGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVC 188
ET + HGTH + T A A+GT +G+A A + Y+V
Sbjct: 215 DYDPKETPTGDPRGEATDHGTHVAGTVA------------ANGTIKGVAPDATLLAYRVL 262
Query: 189 WLAGCFGSD-ILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFT-AMAQGIFVSCS 246
G ++ ++AG+++A++DG +VM++S+G L + D A AM++G+ S
Sbjct: 263 GPGGSGTTENVIAGVERAVQDGADVMNLSLGNSLNN--PDWATSTALDWAMSEGVVAVTS 320
Query: 247 AGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSR----RPLSGS 302
GN GP ++ + + G Y S + V Y++ + L+
Sbjct: 321 NGNSGPNGWTVGSPGTSREAISVGATQLPLNEYAVTFGSYSSAKVMGYNKEDDVKALNNK 380
Query: 303 MVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMIL 362
V +V+A + + GK+ V RG + V+K K AG +GM++
Sbjct: 381 EVELVEAG---------IGEAKDFEGKDLTGKVAVVKRGSIAFVDKADNAKKAGAIGMVV 431
Query: 363 TNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVA 422
N S E +P+ + + G+ + + + + ++ LG Q VA
Sbjct: 432 YNNLSGEIEANVPGMSVPTIKLSLEDGEKLVSALKAGETKTTFKLTVSKALGEQ----VA 487
Query: 423 AFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRH-VSFNIISGTSMSCP 481
FSSRGP + ++KPD+ APGVNI++ PT D H + GTSM+ P
Sbjct: 488 DFSSRGP-VMDTWMIKPDISAPGVNIVSTI-----PT---HDPDHPYGYGSKQGTSMASP 538
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTTA 510
H++G A++K A P+WS IK+A+M TA
Sbjct: 539 HIAGAVAVIKQAKPKWSVEQIKAAIMNTA 567
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 138/602 (22%), Positives = 234/602 (38%), Gaps = 135/602 (22%)
Query: 28 TYKNVIHGFSTRLTAKEAESLQKQPGIVSV-LPEVRYELHTTRTPEFLGLGKSETLFPTS 86
+Y V++GFST++ + L++ G+ +V L +V Y + + ++
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKAN----SMANVQAVWSNY 204
Query: 87 EVQSE-VIVGVLDTGVWP------------------EIKSFDDTGM------GPVPRGWK 121
+ + E +V V+DTG+ P +++ F DT VP G+
Sbjct: 205 KYKGEGTVVSVIDTGIDPTHKDMRLSDDKDVKLTKYDVEKFTDTAKHGRYFTSKVPYGFN 264
Query: 122 GVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTAR------- 174
+ + D+T D+ HG H A + G A+GT
Sbjct: 265 YADNNDTI--TDDTV-------DEQHGMHV-----------AGIIG-ANGTGDDPTKSVV 303
Query: 175 GMAAQARVATYKVCWLAGCFGSDILAGMDKAIED----GVNVMSMSIGGGLTDYYRDTVA 230
G+A +A++ KV + + A + AIED G +V++MS+G + +
Sbjct: 304 GVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPE 363
Query: 231 IGAF-TAMAQGIFVSCSAGNGGPYANSISNVAPWI------TTVGAGTLDRNFPTYVSLG 283
I A A G SAGN G ++ V VG R T S
Sbjct: 364 IAAVQNANESGTAAVISAGNSGTSGSATQGVNKDYYGLQDNEMVGTPGTSRGATTVASAE 423
Query: 284 NGKSFS-GVSLYSRRPLSGSMVPIVDAAN------------VSSTSSGNLCM-TGSLIPA 329
N S V++ + L I ++N V +SG+L + A
Sbjct: 424 NTDVISQAVTITDGKDLQLGPETIQLSSNDFTGSFDQKKFYVVKDASGDLSKGAAADYTA 483
Query: 330 KVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEEL--VADAQLLPSANVGEK 387
GKI + RG + +K + AG G+I+ N D L + P+ + K
Sbjct: 484 DAKGKIAIVKRGELNFADKQKYAQAAGAAGLIIVNNDGTATPLTSIRLTTTFPTFGLSSK 543
Query: 388 AGDAIKNYISSDPGPMATIISRGTQLGIQPSP-------VVAAFSSRGPNPITPEILKPD 440
G + +++++ P S G ++ + P ++ F+S GP ++ KPD
Sbjct: 544 TGQKLVDWVTAHPDD-----SLGVKIALTLLPNQKYTEDKMSDFTSYGP--VSNLSFKPD 596
Query: 441 LIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAA-----HP 495
+ APG NI W S + + + +SGTSM+ P ++G ALLK A +P
Sbjct: 597 ITAPGGNI---W----------STQNNNGYTNMSGTSMASPFIAGSQALLKQALNNKNNP 643
Query: 496 EWSP-SAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDF----------GAGHVDPVAA 544
++ +K +T T ++++T QP ++ GAG VD AA
Sbjct: 644 FYADYKQLKGTALTDFLKT-------VEMNTAQPINDINYNNVIVSPRRQGAGLVDVKAA 696
Query: 545 LD 546
+D
Sbjct: 697 ID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 166/425 (39%), Gaps = 66/425 (15%)
Query: 144 DDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMD 203
D HGTH S +G+ + G +A++ +V + G +D
Sbjct: 190 DQEHGTHVSGILSGNAPSETK----EPYRLEGAMPEAQLLLMRVEIVNGL--ADYARNYA 243
Query: 204 KAIEDGVN----VMSMSIGGGLTDYYR--DTVAIGAFTAMAQGIFVSCSAGN----GGPY 253
+AI D VN V++MS G Y D A ++G+ + SAGN GG
Sbjct: 244 QAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKT 303
Query: 254 ANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVS 313
+++ P VG + T S K + ++ +P++
Sbjct: 304 RLPLAD-HPDYGVVGTPAAADSTLTVASYSPDKQLTETAMVKTDDQQDKEMPVLSTNRFE 362
Query: 314 STSSGNLCMTGSLIP----AKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYG 369
+ + + V GKI + +RG +K K AG VG+++ + G
Sbjct: 363 PNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFKDKVANAKKAGAVGVLIYDNQDKG 422
Query: 370 EEL-VADAQLLPSANVGEKAG----DAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAF 424
+ + + +P+A + K G D + I+ + P + GT+L + F
Sbjct: 423 FPIELPNVDQMPAAFISRKDGLLLKDNPQKTITFNATPKVLPTASGTKL--------SRF 474
Query: 425 SSRGPNPITPE-ILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHV 483
SS G +T + +KPD+ APG +IL+ + +SGTSMS P V
Sbjct: 475 SSWG---LTADGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLV 518
Query: 484 SGLAALLKA----AHPEWSPSA----IKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFG 535
+G+ LL+ +P+ +PS K LM++A + L D +P G
Sbjct: 519 AGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATA-------LYDEDEKAYFSPRQQG 571
Query: 536 AGHVD 540
AG VD
Sbjct: 572 AGAVD 576
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 103/429 (24%), Positives = 166/429 (38%), Gaps = 66/429 (15%)
Query: 144 DDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMD 203
D HGTH S +G+ + G +A++ +V + G +D
Sbjct: 192 DQEHGTHVSGILSGNAPSETK----EPYRLEGAMPEAQLLLMRVEIVNGL--ADYARNYA 245
Query: 204 KAIEDGVN----VMSMSIGGGLTDYYR--DTVAIGAFTAMAQGIFVSCSAGN----GGPY 253
+AI D VN V++MS G Y D A ++G+ + SAGN GG
Sbjct: 246 QAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKT 305
Query: 254 ANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVS 313
+++ P VG + T S K + + +P++
Sbjct: 306 RLPLAD-HPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFE 364
Query: 314 STSSGNLCM----TGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYG 369
+ + T V GKI + +RG +K K AG VG+++ + G
Sbjct: 365 PNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKG 424
Query: 370 EEL-VADAQLLPSANVGEKAG----DAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAF 424
+ + + +P+A + K G D K I+ + P + GT+L + F
Sbjct: 425 FPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLPTASGTKL--------SRF 476
Query: 425 SSRGPNPITPE-ILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHV 483
SS G +T + +KPD+ APG +IL+ + +SGTSMS P V
Sbjct: 477 SSWG---LTADGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLV 520
Query: 484 SGLAALLKA----AHPEWSPSA----IKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFG 535
+G+ LL+ +P+ +PS K LM++A + L D +P G
Sbjct: 521 AGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATA-------LYDEDEKAYFSPRQQG 573
Query: 536 AGHVDPVAA 544
AG VD A
Sbjct: 574 AGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 103/429 (24%), Positives = 166/429 (38%), Gaps = 66/429 (15%)
Query: 144 DDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMD 203
D HGTH S +G+ + G +A++ +V + G +D
Sbjct: 192 DQEHGTHVSGILSGNAPSETK----EPYRLEGAMPEAQLLLMRVEIVNGL--ADYARNYA 245
Query: 204 KAIEDGVN----VMSMSIGGGLTDYYR--DTVAIGAFTAMAQGIFVSCSAGN----GGPY 253
+AI D VN V++MS G Y D A ++G+ + SAGN GG
Sbjct: 246 QAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKT 305
Query: 254 ANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVS 313
+++ P VG + T S K + + +P++
Sbjct: 306 RLPLAD-HPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFE 364
Query: 314 STSSGNLCM----TGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYG 369
+ + T V GKI + +RG +K K AG VG+++ + G
Sbjct: 365 PNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKG 424
Query: 370 EEL-VADAQLLPSANVGEKAG----DAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAF 424
+ + + +P+A + K G D K I+ + P + GT+L + F
Sbjct: 425 FPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLPTASGTKL--------SRF 476
Query: 425 SSRGPNPITPE-ILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHV 483
SS G +T + +KPD+ APG +IL+ + +SGTSMS P V
Sbjct: 477 SSWG---LTADGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLV 520
Query: 484 SGLAALLKA----AHPEWSPSA----IKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFG 535
+G+ LL+ +P+ +PS K LM++A + L D +P G
Sbjct: 521 AGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATA-------LYDEDEKAYFSPRQQG 573
Query: 536 AGHVDPVAA 544
AG VD A
Sbjct: 574 AGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|E4UPZ4|SUB1_ARTGP Subtilisin-like protease 1 OS=Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) GN=SUB1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 133/328 (40%), Gaps = 65/328 (19%)
Query: 5 FNDHFEWYDSS------LKSVSASAAMLYTYK-NVIHGFSTRLTAKEAESLQKQPGIVSV 57
FN H W S+ ++ +A M + Y + + G+S + + + K P ++ V
Sbjct: 48 FNHHQSWLQSTHTHNITRRATVQNAGMRHKYNFHKMKGYSGVFDDETIKDIAKDPKVMFV 107
Query: 58 LPEVRYELH----TTRTPEFLGLGKSETLFP-------TSEVQSEVIVGVLDTGVWPEIK 106
P+ +H P + GL + + P S + V +DTGV +I
Sbjct: 108 EPDTIISVHGKVDQNNVPSW-GLARISSSKPGTQDYTYDSSAGEGITVYSVDTGV--DIN 164
Query: 107 SFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLF 166
D G + +W V D+ D GHGTHTS T G
Sbjct: 165 HEDFEG--------RAIWGSNQVNDGDDN-------DRSGHGTHTSGTMVGKEF------ 203
Query: 167 GFASGTARGMAAQARVATYKVCWLAGCF-GSDILAGMDKAIED-----GVN--VMSMSIG 218
G+A +A++ KV G S I+AG++ +E G N VM+MS+G
Sbjct: 204 --------GIAKKAKLVAVKVLGNDGSGPTSGIVAGINWCVEHARQNGGTNKAVMNMSLG 255
Query: 219 GGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVA-PWITTVGAGTLDRNFP 277
GG + A A+ QG+F+S +AGN A S S + P + TVGA D +
Sbjct: 256 GGSSSALNRAAA----QAVEQGMFLSVAAGNDNTDARSSSPASEPSVCTVGASAEDDSRS 311
Query: 278 TYVSLGNGKSF--SGVSLYSRRPLSGSM 303
++ + G G ++ S RP GS
Sbjct: 312 SFSNWGPSLDLFAPGSNIISARPGGGSQ 339
|
Secreted subtilisin-like serine protease with keratinolytic activity that contributes to pathogenicity. Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) (taxid: 535722) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 701 | ||||||
| 255538108 | 769 | Xylem serine proteinase 1 precursor, put | 1.0 | 0.911 | 0.744 | 0.0 | |
| 224063461 | 779 | predicted protein [Populus trichocarpa] | 1.0 | 0.899 | 0.736 | 0.0 | |
| 359492553 | 765 | PREDICTED: subtilisin-like protease-like | 1.0 | 0.916 | 0.726 | 0.0 | |
| 449450265 | 770 | PREDICTED: subtilisin-like protease-like | 1.0 | 0.910 | 0.699 | 0.0 | |
| 356552252 | 774 | PREDICTED: subtilisin-like protease-like | 1.0 | 0.905 | 0.684 | 0.0 | |
| 350537151 | 766 | SBT1 protein precursor [Solanum lycopers | 1.0 | 0.915 | 0.678 | 0.0 | |
| 356564135 | 777 | PREDICTED: subtilisin-like protease-like | 1.0 | 0.902 | 0.680 | 0.0 | |
| 356510531 | 770 | PREDICTED: subtilisin-like protease-like | 0.997 | 0.907 | 0.689 | 0.0 | |
| 225438930 | 767 | PREDICTED: subtilisin-like protease-like | 0.998 | 0.912 | 0.675 | 0.0 | |
| 356514463 | 769 | PREDICTED: subtilisin-like protease-like | 0.995 | 0.907 | 0.686 | 0.0 |
| >gi|255538108|ref|XP_002510119.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223550820|gb|EEF52306.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1117 bits (2889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/725 (74%), Positives = 611/725 (84%), Gaps = 24/725 (3%)
Query: 1 MPATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPE 60
MPA+F+DH +WYDSSLKSVS SA MLY Y NVIHGFSTRLT++EAE L+KQ GI+SVLPE
Sbjct: 45 MPASFDDHLQWYDSSLKSVSESADMLYDYNNVIHGFSTRLTSEEAELLEKQEGIISVLPE 104
Query: 61 VRYELHTTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGW 120
+ YELHTTRTPEFLGLGKSE FPTS+ SEV+VGVLDTGVWPE KSFDDTG+GP+PR W
Sbjct: 105 MIYELHTTRTPEFLGLGKSEAFFPTSDSVSEVVVGVLDTGVWPEAKSFDDTGLGPIPRTW 164
Query: 121 KGVW------------------------YEEAVGPIDETAESKSPRDDDGHGTHTSTTAA 156
KG YE A GP+DET ES+SPRDDDGHGTHTSTTAA
Sbjct: 165 KGECETGKNFNSSSCNRKLIGARFFSKGYEAAFGPVDETVESRSPRDDDGHGTHTSTTAA 224
Query: 157 GSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMS 216
GS V+GASLFGFA+G ARGMA QARVA YKVCWL GCFGSDI+A MDKA+EDGVNV+SMS
Sbjct: 225 GSAVSGASLFGFATGIARGMATQARVAAYKVCWLGGCFGSDIVAAMDKAVEDGVNVISMS 284
Query: 217 IGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNF 276
IGGGL+DYYRD VAIGAFTA AQGI VSCSAGNGGP S+SN+APWITTVGAGTLDR+F
Sbjct: 285 IGGGLSDYYRDIVAIGAFTATAQGILVSCSAGNGGPSQGSLSNIAPWITTVGAGTLDRDF 344
Query: 277 PTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIV 336
P YV LGNGK+FSG SLYS +PLS S+VP+V A N S+ +SG+LCM+G+LIP KVAGKIV
Sbjct: 345 PAYVRLGNGKNFSGASLYSGKPLSDSLVPLVSAGNASNATSGSLCMSGTLIPTKVAGKIV 404
Query: 337 VCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYI 396
+CDRGGNSRV+KG+EVK+AGG+GMIL NT+ YG+ELVADA LLP+A VG+ + D IK Y
Sbjct: 405 ICDRGGNSRVQKGLEVKNAGGIGMILANTELYGDELVADAHLLPTAAVGQTSADVIKRYA 464
Query: 397 SSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAV 456
SD P ATI GT +G++PSPVVAAFSSRGPN +TPEILKPD+IAPGVNILAGWTGA
Sbjct: 465 FSDLKPTATIAFGGTHIGVEPSPVVAAFSSRGPNLVTPEILKPDIIAPGVNILAGWTGAA 524
Query: 457 GPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGN 516
GPTGL D R VSFNIISGTSMSCPHVSGLAA +KAAH +WSP+AI+SALMTTAY+ +
Sbjct: 525 GPTGLTDDTRRVSFNIISGTSMSCPHVSGLAAFIKAAHQDWSPAAIRSALMTTAYTAYKS 584
Query: 517 GKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQAT 576
GKT+LD+STGQP+TPFD+GAGHV+P+AALDPGLVYDATV+DYL FLCAL+YS+ QIK
Sbjct: 585 GKTILDVSTGQPATPFDYGAGHVNPLAALDPGLVYDATVEDYLGFLCALNYSAAQIKAVI 644
Query: 577 NRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVS 636
NRDF C +K YSLGD+NYPSFSVP ETASG GG G TSTVKYTRTLTNVGTP TY VS
Sbjct: 645 NRDFTCDPAKKYSLGDLNYPSFSVPLETASGKGGGAGVTSTVKYTRTLTNVGTPATYKVS 704
Query: 637 VSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPI 696
VSS++ SVKI VEPESLSFS QYEKKSY VTF+A+S+PSGTT+FARL+WS GKHVVGSPI
Sbjct: 705 VSSETPSVKISVEPESLSFSEQYEKKSYTVTFSATSLPSGTTNFARLEWSSGKHVVGSPI 764
Query: 697 AFSWT 701
AFSWT
Sbjct: 765 AFSWT 769
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063461|ref|XP_002301156.1| predicted protein [Populus trichocarpa] gi|222842882|gb|EEE80429.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/726 (73%), Positives = 608/726 (83%), Gaps = 25/726 (3%)
Query: 1 MPATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPE 60
MPA + DHF+WYDSSLKSVS SA MLYTY N+IHGFST+LT EAE L+KQ GI+SVLPE
Sbjct: 54 MPANYYDHFQWYDSSLKSVSESADMLYTYNNIIHGFSTQLTPDEAELLEKQSGILSVLPE 113
Query: 61 VRYELHTTRTPEFLGLGKSE-TLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRG 119
+ Y+LHTT TPEFLGLGKS+ L P S SEVIVGVLDTGVWPEIKSF DTG+GP+P
Sbjct: 114 MIYKLHTTHTPEFLGLGKSDAVLLPASASLSEVIVGVLDTGVWPEIKSFGDTGLGPIPST 173
Query: 120 WKGVW------------------------YEEAVGPIDETAESKSPRDDDGHGTHTSTTA 155
WKG YE A GPIDET ESKSPRDDDGHGTHT+TTA
Sbjct: 174 WKGSCQVGKNFNSSSCNRKLIGAQYFSKGYEAAFGPIDETMESKSPRDDDGHGTHTATTA 233
Query: 156 AGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSM 215
AGS V+GASLFG+ASG ARGMA +ARVA YKVCWL GCF SDILA M+KA+ DGVNVMSM
Sbjct: 234 AGSAVSGASLFGYASGIARGMATEARVAAYKVCWLGGCFSSDILAAMEKAVADGVNVMSM 293
Query: 216 SIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRN 275
SIGGGL+DY RDTVAIGAF A AQGI VSCSAGNGGP S+SNVAPWITTVGAGTLDR+
Sbjct: 294 SIGGGLSDYTRDTVAIGAFRAAAQGILVSCSAGNGGPSPGSLSNVAPWITTVGAGTLDRD 353
Query: 276 FPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKI 335
FP +VSLG+GK +SG+SLYS +PLS S+VP+V A NVS+++SG+LCMTG+LIPA+VAGKI
Sbjct: 354 FPAFVSLGDGKKYSGISLYSGKPLSDSLVPLVYAGNVSNSTSGSLCMTGTLIPAQVAGKI 413
Query: 336 VVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNY 395
V+CDRGGNSRV+KG+ VKD+GG+GMIL NT+ YGEELVADA LLP+A VG + +AIKNY
Sbjct: 414 VICDRGGNSRVQKGLVVKDSGGLGMILANTELYGEELVADAHLLPTAAVGLRTANAIKNY 473
Query: 396 ISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGA 455
DP PM TI S GT+LG++PSPVVAAFSSRGPN +TPE+LKPDLIAPGVNILAGWTG
Sbjct: 474 AFLDPKPMGTIASGGTKLGVEPSPVVAAFSSRGPNLVTPEVLKPDLIAPGVNILAGWTGG 533
Query: 456 VGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNG 515
GPTGL +DKRHV FNIISGTSMSCPHVSGLAAL+KAAH +WSP+AIKSALMTTAY+T
Sbjct: 534 AGPTGLTNDKRHVEFNIISGTSMSCPHVSGLAALIKAAHQDWSPAAIKSALMTTAYATYK 593
Query: 516 NGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQA 575
NG+ LLD++TG+PSTPFD+GAGHV+PVAALDPGLVYDATV DY+ F CAL+YS+ IKQ
Sbjct: 594 NGENLLDVATGKPSTPFDYGAGHVNPVAALDPGLVYDATVDDYISFFCALNYSASDIKQI 653
Query: 576 TNRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMV 635
T +DF C SSK YSLGD+NYPSFSVP +TASG GG G STVKYTRTLTNVG P TY V
Sbjct: 654 TTKDFICDSSKKYSLGDLNYPSFSVPLQTASGKEGGAGVKSTVKYTRTLTNVGAPATYKV 713
Query: 636 SVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSP 695
S++SQ+TSVK+LVEPESLSF+++YEKKSY VTFTA+SMPSGT SFA L+WSDGKHVV SP
Sbjct: 714 SMTSQTTSVKMLVEPESLSFAKEYEKKSYTVTFTATSMPSGTNSFAHLEWSDGKHVVRSP 773
Query: 696 IAFSWT 701
IAFSWT
Sbjct: 774 IAFSWT 779
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492553|ref|XP_002283279.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/725 (72%), Positives = 605/725 (83%), Gaps = 24/725 (3%)
Query: 1 MPATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPE 60
MP TF+DHF+WYDSSLK+ S+SA MLYTY NV+HGFSTRLT +EAE L+ Q GI+SVLPE
Sbjct: 41 MPTTFDDHFQWYDSSLKTASSSADMLYTYNNVVHGFSTRLTTEEAELLRGQLGILSVLPE 100
Query: 61 VRYELHTTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGW 120
RYELHTTRTPEFLGLGKS P ++ SEVIVGVLDTGVWPE+KSFDDTG+GPVP W
Sbjct: 101 ARYELHTTRTPEFLGLGKSVAFLPQADSASEVIVGVLDTGVWPELKSFDDTGLGPVPSSW 160
Query: 121 KGVW------------------------YEEAVGPIDETAESKSPRDDDGHGTHTSTTAA 156
KG YE A GP++ET ES+SPRDDDGHG+HTSTTA
Sbjct: 161 KGECETGKTFPLSSCNRKLIGARFFSRGYEVAFGPVNETIESRSPRDDDGHGSHTSTTAV 220
Query: 157 GSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMS 216
GS V GASLFGFA+GTARGMA ARVA YKVCWL GC+GSDI+A MDKA++DGV+V+SMS
Sbjct: 221 GSAVEGASLFGFAAGTARGMATHARVAAYKVCWLGGCYGSDIVAAMDKAVQDGVDVLSMS 280
Query: 217 IGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNF 276
IGGGL+DY +D+VAIGAF AM QGI VSCSAGNGGP +S+SNVAPWITTVGAGTLDR+F
Sbjct: 281 IGGGLSDYTKDSVAIGAFRAMEQGILVSCSAGNGGPAPSSLSNVAPWITTVGAGTLDRDF 340
Query: 277 PTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIV 336
P +V LG+GK FSGVSLYS +PLS S++P+V A N SS+ +GNLC+ +LIP KVAGKIV
Sbjct: 341 PAFVMLGDGKKFSGVSLYSGKPLSDSLIPLVYAGNASSSPNGNLCIPDNLIPGKVAGKIV 400
Query: 337 VCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYI 396
+CDRG N+RV+KG+ VK+AGGVGMILTNTD YGEELVADA LLP+A VG+KAGD+IK+YI
Sbjct: 401 LCDRGSNARVQKGIVVKEAGGVGMILTNTDLYGEELVADAHLLPTAAVGQKAGDSIKSYI 460
Query: 397 SSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAV 456
SSDP PMATI GTQ+G+QPSPVVA+FSSRGPNP+TPEILKPD+IAPGVNILAGWTGAV
Sbjct: 461 SSDPNPMATIAPGGTQVGVQPSPVVASFSSRGPNPVTPEILKPDIIAPGVNILAGWTGAV 520
Query: 457 GPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGN 516
GPTGL+ D R VSFNIISGTSMSCPHVSGLAALLKAAHPEW P+AIKSALMTTAY T
Sbjct: 521 GPTGLQVDTRKVSFNIISGTSMSCPHVSGLAALLKAAHPEWRPAAIKSALMTTAYHTYKG 580
Query: 517 GKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQAT 576
G+T+ D++TG+P+TPFD+GAGHV+PV+ALDPGLVYDATV DYL F CAL+Y +IK+ T
Sbjct: 581 GETIQDVATGRPATPFDYGAGHVNPVSALDPGLVYDATVDDYLSFFCALNYKQDEIKRFT 640
Query: 577 NRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVS 636
NRDF C +K YS+ D+NYPSF+VP +TASG GG G + VKYTRTLTNVGTP TY VS
Sbjct: 641 NRDFTCDMNKKYSVEDLNYPSFAVPLQTASGKGGGSGELTVVKYTRTLTNVGTPATYKVS 700
Query: 637 VSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPI 696
VSSQ +SVKI VEPESL+FS EKKSY VTFTASSMPSG TSFA L+WSDGKH+VGSP+
Sbjct: 701 VSSQISSVKISVEPESLTFSEPNEKKSYTVTFTASSMPSGMTSFAHLEWSDGKHIVGSPV 760
Query: 697 AFSWT 701
AFSWT
Sbjct: 761 AFSWT 765
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450265|ref|XP_004142884.1| PREDICTED: subtilisin-like protease-like isoform 1 [Cucumis sativus] gi|449530704|ref|XP_004172333.1| PREDICTED: subtilisin-like protease-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1034 bits (2673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/725 (69%), Positives = 599/725 (82%), Gaps = 24/725 (3%)
Query: 1 MPATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPE 60
MP F+DHF+WYDSSLKSVS SA MLY+Y VIHGFSTRLT +EA+ ++KQ GI++V+PE
Sbjct: 46 MPQAFDDHFQWYDSSLKSVSDSAQMLYSYNTVIHGFSTRLTVEEAKLMEKQEGIIAVIPE 105
Query: 61 VRYELHTTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGW 120
++YELHTTRTPEFLGLGKS + FP SE SEVI+GVLDTGVWPE++SF D G+GP+P W
Sbjct: 106 MKYELHTTRTPEFLGLGKSVSFFPASEKVSEVIIGVLDTGVWPELESFSDAGLGPIPASW 165
Query: 121 KGVW------------------------YEEAVGPIDETAESKSPRDDDGHGTHTSTTAA 156
KG YE A GPIDE+ ESKSPRDDDGHG+HTSTTAA
Sbjct: 166 KGECEVGKNFTSSNCNRKLIGARYFSKGYEAAFGPIDESQESKSPRDDDGHGSHTSTTAA 225
Query: 157 GSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMS 216
GS V GA+LFGFA+GTARGMAA+ARVATYKVCWL GCF SDILA MDK++EDG N++S+S
Sbjct: 226 GSAVTGANLFGFAAGTARGMAAEARVATYKVCWLGGCFSSDILAAMDKSVEDGCNILSVS 285
Query: 217 IGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNF 276
+GG DYYRD VAIGAF+A AQG+FVSCSAGNGGP ++++SNVAPWITTVGAGTLDR+F
Sbjct: 286 LGGNSADYYRDNVAIGAFSATAQGVFVSCSAGNGGPSSSTLSNVAPWITTVGAGTLDRDF 345
Query: 277 PTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIV 336
P YV+LGNGK +G SLYS +PL S++PIV AA+ S++SSG+LC++G+L PAKV GKIV
Sbjct: 346 PAYVTLGNGKKITGESLYSGKPLPNSLLPIVSAASASNSSSGSLCLSGTLNPAKVTGKIV 405
Query: 337 VCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYI 396
VCDRGGNSRV+KGV VK+AGG+GMIL NT++YGEE +ADA L+P+A VG+KAGDAIKNYI
Sbjct: 406 VCDRGGNSRVQKGVVVKEAGGLGMILANTEAYGEEQLADAHLIPTAAVGQKAGDAIKNYI 465
Query: 397 SSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAV 456
SSD P ATI + T+LG+QPSPVVAAFSSRGPN +TP+ILKPDLIAPGVNILAGWTG
Sbjct: 466 SSDSNPTATISTGTTRLGVQPSPVVAAFSSRGPNLLTPQILKPDLIAPGVNILAGWTGGA 525
Query: 457 GPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGN 516
GPTGL+SDKRHV+FNIISGTSMSCPH+SGLAAL+KAAHP+WSP+AI+SALMTTAYST N
Sbjct: 526 GPTGLDSDKRHVAFNIISGTSMSCPHISGLAALVKAAHPDWSPAAIRSALMTTAYSTYKN 585
Query: 517 GKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQAT 576
G+ + DIS G PSTPFD GAGHV+P AALDPGLVYD T DYL FLCAL+YSS QIK +
Sbjct: 586 GEMIQDISNGSPSTPFDIGAGHVNPTAALDPGLVYDTTTDDYLAFLCALNYSSLQIKVIS 645
Query: 577 NRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVS 636
+DF C +K Y L D+NYPSF+VP ET S G A +T+KYTRTLTN G +TY VS
Sbjct: 646 KKDFTCNGNKNYKLEDLNYPSFAVPLETPSTRGGENVAPTTIKYTRTLTNKGASSTYKVS 705
Query: 637 VSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPI 696
V+++S+SVKI+VEPESLSF+ E+KSY VTF AS MPSG+ SFARL+WSDGKH+VGSPI
Sbjct: 706 VTAKSSSVKIVVEPESLSFTEVNEQKSYTVTFIASPMPSGSQSFARLEWSDGKHIVGSPI 765
Query: 697 AFSWT 701
AF+WT
Sbjct: 766 AFTWT 770
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552252|ref|XP_003544482.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/726 (68%), Positives = 580/726 (79%), Gaps = 25/726 (3%)
Query: 1 MPATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPE 60
MP TF DH W+DSSLKS S SA +LYTYK+V HGFSTRLT ++A++L KQPGI+SV+PE
Sbjct: 49 MPLTFTDHLSWFDSSLKSASPSAEILYTYKHVAHGFSTRLTPEDADTLSKQPGILSVIPE 108
Query: 61 VRYELHTTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGW 120
++Y+LHTTRTP FLGL K+ TL P SE QS+VI+GVLDTGVWPE+KS DDTG+GPVP W
Sbjct: 109 LKYKLHTTRTPSFLGLDKATTLLPASEQQSQVIIGVLDTGVWPELKSLDDTGLGPVPSTW 168
Query: 121 KGVW------------------------YEEAVGPIDETAESKSPRDDDGHGTHTSTTAA 156
KG YE A+GPID T ESKS RDDDGHG+HT TTAA
Sbjct: 169 KGQCEIGNNMNSSNCNRKLVGARFFSKGYEAALGPIDTTTESKSARDDDGHGSHTLTTAA 228
Query: 157 GSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMS 216
GSVV ASLFG ASGTARGMA QARVA YKVCWL GCF SDI AG+DKAIEDGVNV+SMS
Sbjct: 229 GSVVPEASLFGLASGTARGMATQARVAVYKVCWLGGCFTSDIAAGIDKAIEDGVNVLSMS 288
Query: 217 IGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNF 276
IGG L +YYRD +AIG+FTA + GI VS SAGNGGP S+SNVAPWITTVGAGT+DR+F
Sbjct: 289 IGGSLMEYYRDIIAIGSFTATSHGILVSTSAGNGGPSQGSLSNVAPWITTVGAGTIDRDF 348
Query: 277 PTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIV 336
P Y++LG GK+++G SLY +PLS S +P+V A N S++S G LC+ SLIP KV+GKIV
Sbjct: 349 PAYITLGTGKTYTGASLYRGKPLSDSPLPLVYAGNASNSSVGYLCLQDSLIPEKVSGKIV 408
Query: 337 VCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYI 396
+C+RGGN RVEKG+ VK AGG GMIL N+++YGEELVAD+ LLP+A++G+K+ + +KNY+
Sbjct: 409 ICERGGNPRVEKGLVVKLAGGAGMILANSEAYGEELVADSHLLPAASLGQKSSEILKNYV 468
Query: 397 SSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAV 456
SS P P A I GT L +QPSPVVAAFSSRGPN +TP+ILKPDLIAPGVNILAGWTGAV
Sbjct: 469 SSSPNPTAKIAFLGTHLQVQPSPVVAAFSSRGPNALTPKILKPDLIAPGVNILAGWTGAV 528
Query: 457 GPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGN 516
GPTGL D RH+SFNIISGTSMSCPHVSGLAA+LK AHP+WSP+AI+SALMTTAY++ N
Sbjct: 529 GPTGLTVDSRHISFNIISGTSMSCPHVSGLAAILKGAHPQWSPAAIRSALMTTAYTSYKN 588
Query: 517 GKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQAT 576
G+T+ D+STGQP+TPFD+GAGHVDPVAALDPGLVYDA V DYL F CAL+YSSFQIK A
Sbjct: 589 GETIQDVSTGQPATPFDYGAGHVDPVAALDPGLVYDANVDDYLGFFCALNYSSFQIKLAA 648
Query: 577 NRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVS 636
RDF C S K Y + D NYPSF+VP ET SG GG A TVKY+R LTNVG P TY S
Sbjct: 649 RRDFTCDSKKVYRVEDFNYPSFAVPLETTSGIGGGSDAPKTVKYSRVLTNVGAPGTYKAS 708
Query: 637 VSSQ-STSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSP 695
V S +VKI+VEPE+LSF+ YEKK Y+V+F +SMPSGTTSFARL+W+DGKH VGSP
Sbjct: 709 VVSLGDLNVKIVVEPETLSFTELYEKKGYMVSFRYTSMPSGTTSFARLEWTDGKHRVGSP 768
Query: 696 IAFSWT 701
IAFSWT
Sbjct: 769 IAFSWT 774
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350537151|ref|NP_001234282.1| SBT1 protein precursor [Solanum lycopersicum] gi|1771160|emb|CAA67429.1| SBT1 [Solanum lycopersicum] gi|3687305|emb|CAA06999.1| subtilisin-like protease [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/727 (67%), Positives = 584/727 (80%), Gaps = 26/727 (3%)
Query: 1 MPATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPE 60
MPA F+DH +WYDSSLKSVS SA MLYTY +VIHG+ST+LTA EA++L +QPGI+ V E
Sbjct: 40 MPADFDDHTQWYDSSLKSVSKSANMLYTYNSVIHGYSTQLTADEAKALAQQPGILLVHEE 99
Query: 61 VRYELHTTRTPEFLGL--GKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPR 118
V YELHTTR+P FLGL +S + FP +E +SEVI+GVLDTGVWPE KSFDDTG+G VP
Sbjct: 100 VIYELHTTRSPTFLGLEGRESRSFFPQTEARSEVIIGVLDTGVWPESKSFDDTGLGQVPA 159
Query: 119 GWKGVW------------------------YEEAVGPIDETAESKSPRDDDGHGTHTSTT 154
WKG YE A G IDET ESKSPRDD+GHGTHT+TT
Sbjct: 160 SWKGKCQTGKNFDASSCNRKLIGARFFSQGYEAAFGAIDETIESKSPRDDEGHGTHTATT 219
Query: 155 AAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMS 214
AAGSVV GASL G+A+GTARGMA+ ARVA YKVCW GCF SDILAGMD+A+ DGVNV+S
Sbjct: 220 AAGSVVTGASLLGYATGTARGMASHARVAAYKVCWTGGCFSSDILAGMDQAVIDGVNVLS 279
Query: 215 MSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDR 274
+S+GG ++DY+RD VAIGAF+A +QGIFVSCSAGNGGP + ++SNVAPWITTVGAGT+DR
Sbjct: 280 LSLGGTISDYHRDIVAIGAFSAASQGIFVSCSAGNGGPSSGTLSNVAPWITTVGAGTMDR 339
Query: 275 NFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGK 334
FP Y+ +GNGK +GVSLYS + L S++P+V A NVS +S+GNLC +GSLIP KVAGK
Sbjct: 340 EFPAYIGIGNGKKLNGVSLYSGKALPSSVMPLVYAGNVSQSSNGNLCTSGSLIPEKVAGK 399
Query: 335 IVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKN 394
IVVCDRG N+R +KG+ VKDAGG+GMIL NTD+YG+ELVADA L+P+A VG+ AG+ IK
Sbjct: 400 IVVCDRGMNARAQKGLVVKDAGGIGMILANTDTYGDELVADAHLIPTAAVGQTAGNLIKQ 459
Query: 395 YISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTG 454
YI+S+ P ATI GT+LG+QPSPVVAAFSSRGPNPITP++LKPDLIAPGVNILAGWTG
Sbjct: 460 YIASNSNPTATIAFGGTKLGVQPSPVVAAFSSRGPNPITPDVLKPDLIAPGVNILAGWTG 519
Query: 455 AVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTN 514
VGPTGL+ D R+V FNIISGTSMSCPHVSGLAALLKAAHPEWSP+AI+SALMTT+YST
Sbjct: 520 KVGPTGLQEDTRNVGFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTSYSTY 579
Query: 515 GNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQ 574
NGKT+ D++TG STPFD+GAGHV+P AA+ PGLVYD TV DY++FLCALDYS IK
Sbjct: 580 KNGKTIEDVATGMSSTPFDYGAGHVNPTAAVSPGLVYDLTVDDYINFLCALDYSPSMIKV 639
Query: 575 ATNRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYM 634
RD +C +K Y + D+NYPSFS+P ETA G + +YTRTLTNVG P TY
Sbjct: 640 IAKRDISCDENKEYRVADLNYPSFSIPMETAWGEHADSSTPTVTRYTRTLTNVGNPATYK 699
Query: 635 VSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGS 694
SVSS++ VKILVEP++L+FSR+ EKK+Y VTFTA+S PSGTTSFARL+WSDG+HVV S
Sbjct: 700 ASVSSETQDVKILVEPQTLTFSRKNEKKTYTVTFTATSKPSGTTSFARLEWSDGQHVVAS 759
Query: 695 PIAFSWT 701
PIAFSWT
Sbjct: 760 PIAFSWT 766
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564135|ref|XP_003550312.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/726 (68%), Positives = 576/726 (79%), Gaps = 25/726 (3%)
Query: 1 MPATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPE 60
MP TF DH W+D+SLKS S SA +LYTYK+V HGFS RLT K+ ++L KQPGI+SV+PE
Sbjct: 52 MPLTFTDHLSWFDASLKSASPSAEILYTYKHVAHGFSARLTPKDVDTLAKQPGILSVIPE 111
Query: 61 VRYELHTTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGW 120
++Y+LHTTRTP FLGL K+ TL P SE QS+V++G+LDTGVWPE+KS DDTG+GPVP W
Sbjct: 112 LKYKLHTTRTPNFLGLDKATTLLPASEQQSQVVIGLLDTGVWPELKSLDDTGLGPVPSTW 171
Query: 121 KGVW------------------------YEEAVGPIDETAESKSPRDDDGHGTHTSTTAA 156
KG YE A+GPID T ESKS RDDDGHG+HT TTAA
Sbjct: 172 KGQCEIGNNMNSSNCNRKLVGARFFSKGYEAALGPIDTTTESKSARDDDGHGSHTLTTAA 231
Query: 157 GSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMS 216
GSVV ASLFG ASGTARGMA QARVA YKVCWL GCF SDI AG+DKAIEDGVNV+SMS
Sbjct: 232 GSVVPEASLFGLASGTARGMATQARVAVYKVCWLGGCFTSDIAAGIDKAIEDGVNVLSMS 291
Query: 217 IGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNF 276
IGG L +YYRD +AIG+FTAM+ GI VS SAGNGGP S+SNVAPWITTVGAGT+DR+F
Sbjct: 292 IGGSLMEYYRDIIAIGSFTAMSHGILVSTSAGNGGPSQGSLSNVAPWITTVGAGTIDRDF 351
Query: 277 PTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIV 336
P Y++LG GK+++G SLYS +PLS S +P+V A N S++S G LC+ SLIP KV+GKIV
Sbjct: 352 PAYITLGTGKTYTGASLYSGKPLSDSPLPLVYAGNASNSSVGYLCLQDSLIPEKVSGKIV 411
Query: 337 VCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYI 396
+C+RGGN RVEKG+ VK AGG GMIL N+++YGEELVAD+ LLP+A++G+K+ + +KNY+
Sbjct: 412 ICERGGNPRVEKGLVVKLAGGAGMILANSEAYGEELVADSHLLPAASLGQKSSEILKNYV 471
Query: 397 SSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAV 456
SS P P A I GT L +QPSPVVAAFSSRGPN +TP+ILKPDLIAPGVNILAGWTGAV
Sbjct: 472 SSSPNPTAKIAFLGTHLQVQPSPVVAAFSSRGPNALTPKILKPDLIAPGVNILAGWTGAV 531
Query: 457 GPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGN 516
GPTGL D RHVSFNIISGTSMSCPHVSGLAA+LK AHP+WSP+AI+SALMTTAY++ N
Sbjct: 532 GPTGLTVDTRHVSFNIISGTSMSCPHVSGLAAILKGAHPQWSPAAIRSALMTTAYTSYKN 591
Query: 517 GKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQAT 576
G+T+ DISTGQP TPFD+GAGHVDPVAALDPGLVYDA V DYL F CAL+YSSFQIK A
Sbjct: 592 GETIQDISTGQPGTPFDYGAGHVDPVAALDPGLVYDANVDDYLGFFCALNYSSFQIKLAA 651
Query: 577 NRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVS 636
RD+ C K Y + D NYPSF+VP +TASG GG TVKY+R LTNVG P TY S
Sbjct: 652 RRDYTCDPKKDYRVEDFNYPSFAVPMDTASGIGGGSDTLKTVKYSRVLTNVGAPGTYKAS 711
Query: 637 VSSQSTS-VKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSP 695
V S S VK +VEP +LSF+ YEKK Y V+FT +SMPSGTTSFARL+W+DGKH VGSP
Sbjct: 712 VMSLGDSNVKTVVEPNTLSFTELYEKKDYTVSFTYTSMPSGTTSFARLEWTDGKHKVGSP 771
Query: 696 IAFSWT 701
IAFSWT
Sbjct: 772 IAFSWT 777
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510531|ref|XP_003523991.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1015 bits (2625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/725 (68%), Positives = 573/725 (79%), Gaps = 26/725 (3%)
Query: 1 MPATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPE 60
MP +FNDH W+DSSLKSVS SA MLYTYK V HGFSTRLT +EAE L KQPG++SV+PE
Sbjct: 48 MPESFNDHLLWFDSSLKSVSDSAEMLYTYKKVAHGFSTRLTTQEAELLSKQPGVLSVIPE 107
Query: 61 VRYELHTTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGW 120
VRY+LHTTRTPEFLGL K TL S QS+VIVGVLDTGVWPE+KSFDDTG+GPVP W
Sbjct: 108 VRYDLHTTRTPEFLGLAKYSTLSLASGKQSDVIVGVLDTGVWPELKSFDDTGLGPVPSSW 167
Query: 121 KGVW------------------------YEEAVGPIDETAESKSPRDDDGHGTHTSTTAA 156
KG YE A GPIDE ESKSPRDDDGHG+HTSTTAA
Sbjct: 168 KGECERGKNFNPSNCNKKLVGARFFSRGYEAAFGPIDEKTESKSPRDDDGHGSHTSTTAA 227
Query: 157 GSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMS 216
GS V GASLFGFA+GTARGMA QAR+ATYKVCWL GCF SDI AG+DKAIEDGVN++SMS
Sbjct: 228 GSAVVGASLFGFANGTARGMATQARLATYKVCWLGGCFTSDIAAGIDKAIEDGVNILSMS 287
Query: 217 IGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNF 276
IGGGL DYY+DT+AIG F A A GI VS SAGNGGP ++SNVAPW+TTVGAGT+DR+F
Sbjct: 288 IGGGLMDYYKDTIAIGTFAATAHGILVSNSAGNGGPSQATLSNVAPWLTTVGAGTIDRDF 347
Query: 277 PTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIV 336
P Y++LGNGK ++GVSLY+ + S +PIV AANVS S NLC G+LI KVAGKIV
Sbjct: 348 PAYITLGNGKMYTGVSLYNGKLPPNSPLPIVYAANVSDESQ-NLCTRGTLIAEKVAGKIV 406
Query: 337 VCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYI 396
+CDRGGN+RVEKG+ VK AGG+GMIL+N + YGEELVAD+ LLP+A +G+K+ + +K Y+
Sbjct: 407 ICDRGGNARVEKGLVVKSAGGIGMILSNNEDYGEELVADSYLLPAAALGQKSSNELKKYV 466
Query: 397 SSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAV 456
S P P A + GTQLG+QPSPVVAAFSSRGPN +TP+ILKPDLIAPGVNILAGWTGAV
Sbjct: 467 FSSPNPTAKLGFGGTQLGVQPSPVVAAFSSRGPNVLTPKILKPDLIAPGVNILAGWTGAV 526
Query: 457 GPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGN 516
GPTGL D RHV FNIISGTSMSCPHV+GLAALLK HPEWSP+AI+SALMTTAY T N
Sbjct: 527 GPTGLTEDTRHVEFNIISGTSMSCPHVTGLAALLKGTHPEWSPAAIRSALMTTAYRTYKN 586
Query: 517 GKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQAT 576
G+T+ D++TG P+TPFD+GAGHVDPVAA DPGLVYD +V DYL F CAL+YSS+QIK
Sbjct: 587 GQTIKDVATGLPATPFDYGAGHVDPVAAFDPGLVYDTSVDDYLSFFCALNYSSYQIKLVA 646
Query: 577 NRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVS 636
RDF C Y + D+NYPSF+VPF TA G GG +TV+YTRTLTNVG P TY VS
Sbjct: 647 RRDFTCSKRNNYRVEDLNYPSFAVPFNTAYGVKGGSRKPATVQYTRTLTNVGAPATYKVS 706
Query: 637 VSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPI 696
V SQS SVKI+V+P++LSF EKK+Y VTFT+SS PSGT SFA L+WSDGKH V SPI
Sbjct: 707 V-SQSPSVKIMVQPQTLSFGGLNEKKNYTVTFTSSSKPSGTNSFAYLEWSDGKHKVTSPI 765
Query: 697 AFSWT 701
AFSWT
Sbjct: 766 AFSWT 770
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438930|ref|XP_002284101.1| PREDICTED: subtilisin-like protease-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1010 bits (2612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/725 (67%), Positives = 581/725 (80%), Gaps = 25/725 (3%)
Query: 1 MPATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPE 60
MP +F + WYDSSLKSVS SA MLY Y NVIHGFSTRLTA+EA SLQ +PGI+S+L E
Sbjct: 44 MPESFQERAHWYDSSLKSVSESAEMLYKYSNVIHGFSTRLTAEEARSLQGRPGILSILEE 103
Query: 61 VRYELHTTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGW 120
VRYELHTTRTPEFLGL KS LFP S SEVI+GVLDTG+WPE KSFDDTG+GP+P W
Sbjct: 104 VRYELHTTRTPEFLGLDKSADLFPESGSASEVIIGVLDTGIWPESKSFDDTGLGPIPSSW 163
Query: 121 KGVW------------------------YEEAVGPIDETAESKSPRDDDGHGTHTSTTAA 156
KG YE +GPIDE+ ESKSPRDDDGHGTHT+TTAA
Sbjct: 164 KGECETGTNFTSSSCNRKLIGARFFSKGYEATLGPIDESKESKSPRDDDGHGTHTATTAA 223
Query: 157 GSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMS 216
GSVV GASLFGFA GTARGMA +AR+A YKVCW+ GCF +DILA +DKA+ED VN++S+S
Sbjct: 224 GSVVEGASLFGFAEGTARGMATRARIAAYKVCWIGGCFSTDILAALDKAVEDNVNILSLS 283
Query: 217 IGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNF 276
+GGG++DYYRD+VA+GAF AM +GI VSCSAGN GP S+SNVAPWITTVGAGTLDR+F
Sbjct: 284 LGGGMSDYYRDSVAMGAFGAMEKGILVSCSAGNSGPSPYSLSNVAPWITTVGAGTLDRDF 343
Query: 277 PTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIV 336
P +VSLGNGK++SGVSLY PL G+++P V A N S+ +GNLCMT +LIP KVAGK+V
Sbjct: 344 PAFVSLGNGKNYSGVSLYRGDPLPGTLLPFVYAGNASNAPNGNLCMTNTLIPEKVAGKMV 403
Query: 337 VCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYI 396
+CDRG N RV+KG VK AGG+GM+L NT + GEELVADA LLP+ VG+K+GDAIK+Y+
Sbjct: 404 MCDRGVNPRVQKGSVVKAAGGIGMVLANTGTNGEELVADAHLLPATAVGQKSGDAIKSYL 463
Query: 397 SSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAV 456
SD TI+ GT++GIQPSPVVAAFSSRGPN ITP+ILKPDLIAPGVNILAGW+GAV
Sbjct: 464 FSDHDATVTILFEGTKVGIQPSPVVAAFSSRGPNSITPDILKPDLIAPGVNILAGWSGAV 523
Query: 457 GPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGN 516
GPTGL +DKRHV FNIISGTSMSCPH+SGLA LLKAAHPEWSP+AI+SALMTTAY+ +
Sbjct: 524 GPTGLPTDKRHVDFNIISGTSMSCPHISGLAGLLKAAHPEWSPAAIRSALMTTAYTNYKS 583
Query: 517 GKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQAT 576
G+ + D++TG+PST FD GAGHVDPV+AL+PGL+YD TV DYL+FLCA++YS+ QI
Sbjct: 584 GQKIQDVATGKPSTAFDHGAGHVDPVSALNPGLIYDLTVDDYLNFLCAINYSAPQISILA 643
Query: 577 NRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVS 636
R+F C + K YS+ D+NYPSF+VP +T G GG G+++ VK+TRTLTNVG+P+TY VS
Sbjct: 644 KRNFTCDTDKKYSVADLNYPSFAVPLQTPLGG-GGEGSSTVVKHTRTLTNVGSPSTYKVS 702
Query: 637 VSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPI 696
+ S+S SVKI VEP SLSFS EKKS+ VTFTA+SMPS T F R++WSDGKHVVGSPI
Sbjct: 703 IFSESESVKISVEPGSLSFSELNEKKSFKVTFTATSMPSNTNIFGRIEWSDGKHVVGSPI 762
Query: 697 AFSWT 701
SWT
Sbjct: 763 VVSWT 767
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514463|ref|XP_003525925.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/725 (68%), Positives = 567/725 (78%), Gaps = 27/725 (3%)
Query: 1 MPATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPE 60
MP +FNDH WYDSSLKSVS SA LYTYK V HGFSTRLT +EAE L KQPG++SV+PE
Sbjct: 48 MPESFNDHLHWYDSSLKSVSDSAERLYTYKKVAHGFSTRLTTQEAELLSKQPGVLSVIPE 107
Query: 61 VRYELHTTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGW 120
VRYELHTTRTPEFLGL K TL S QS+VIVGVLDTGVWPE+KSFDDTG+ PVP W
Sbjct: 108 VRYELHTTRTPEFLGLAKYTTLSLASGKQSDVIVGVLDTGVWPELKSFDDTGLEPVPSSW 167
Query: 121 KGVW------------------------YEEAVGPIDETAESKSPRDDDGHGTHTSTTAA 156
KG YE A GPIDE ESKSPRDDDGHG+HTSTTAA
Sbjct: 168 KGECERGKNFKPSNCNKKLVGARFFSRGYEAAFGPIDEKTESKSPRDDDGHGSHTSTTAA 227
Query: 157 GSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMS 216
GS V GASLFGFA+GTARGMA QARVATYKVCWL GCF SDI AG+DKAIEDGVN++SMS
Sbjct: 228 GSAVFGASLFGFANGTARGMATQARVATYKVCWLGGCFTSDIAAGIDKAIEDGVNILSMS 287
Query: 217 IGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNF 276
IGGGLTDYY+DT+AIG F A A GI VS SAGNGGP ++SNVAPW+TTVGAGT+DR+F
Sbjct: 288 IGGGLTDYYKDTIAIGTFAATAHGILVSNSAGNGGPSQATLSNVAPWLTTVGAGTIDRDF 347
Query: 277 PTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIV 336
P Y++LGNGK ++GVSLY+ + S +PIV A N S S NLC GSLI KVAGKIV
Sbjct: 348 PAYITLGNGKIYTGVSLYNGKLPLNSPLPIVYAGNASEESQ-NLCTRGSLIAKKVAGKIV 406
Query: 337 VCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYI 396
+CDRGGN+RVEKG+ VK AGG+GMIL+N + YGEELVAD+ LLP+A +G+K+ + +K Y+
Sbjct: 407 ICDRGGNARVEKGLVVKSAGGIGMILSNNEDYGEELVADSYLLPAAALGQKSSNELKKYV 466
Query: 397 SSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAV 456
S P P A + GTQLG+QPSPVVAAFSSRGPN +TP+ILKPDLIAPGVNILAGWTGAV
Sbjct: 467 FSFPNPTAKLGFGGTQLGVQPSPVVAAFSSRGPNVLTPKILKPDLIAPGVNILAGWTGAV 526
Query: 457 GPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGN 516
GPTGL D RHV FNIISGTSMSCPHV+GLAALLK HPEWSP+AI+SALMTTAY T N
Sbjct: 527 GPTGLAEDTRHVDFNIISGTSMSCPHVTGLAALLKGIHPEWSPAAIRSALMTTAYRTYKN 586
Query: 517 GKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQAT 576
G+T+ D++TG P+TPFD+GAGHVDPVAA DPGLVYD TV DYL F CAL+YS +QIK
Sbjct: 587 GQTIKDVATGLPATPFDYGAGHVDPVAAFDPGLVYDTTVDDYLSFFCALNYSPYQIKLVA 646
Query: 577 NRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVS 636
RDF C K Y + D+NYPSF+VPF TA G GG +TV+YTRTLTNVG TY VS
Sbjct: 647 RRDFTCSKRKKYRVEDLNYPSFAVPFNTAYGVKGGSSKPATVQYTRTLTNVGAAGTYKVS 706
Query: 637 VSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPI 696
VS + VKI+V+P++LSF EKK+Y VTF +SS PSGTTSFA L+WSDGKH V SPI
Sbjct: 707 VS--QSPVKIVVQPQTLSFRGLNEKKNYTVTFMSSSKPSGTTSFAYLEWSDGKHKVTSPI 764
Query: 697 AFSWT 701
AFSWT
Sbjct: 765 AFSWT 769
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 701 | ||||||
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.808 | 0.749 | 0.652 | 6.5e-245 | |
| UNIPROTKB|Q75I27 | 765 | OSJNBa0091E13.30 "Putaive subt | 0.820 | 0.751 | 0.628 | 3.1e-236 | |
| UNIPROTKB|Q94H95 | 764 | OSJNBb0048A17.11 "cDNA clone:J | 0.810 | 0.743 | 0.605 | 2e-232 | |
| TAIR|locus:2064696 | 754 | AT2G05920 "AT2G05920" [Arabido | 0.796 | 0.740 | 0.552 | 1.3e-189 | |
| UNIPROTKB|Q7XTY8 | 776 | OSJNBa0019K04.9 "Os04g0573300 | 0.805 | 0.728 | 0.518 | 8.9e-182 | |
| TAIR|locus:2165366 | 780 | SBT1.3 "AT5G51750" [Arabidopsi | 0.808 | 0.726 | 0.507 | 3.4e-180 | |
| UNIPROTKB|Q69P78 | 770 | OJ1344_B01.33 "Putative serine | 0.796 | 0.724 | 0.533 | 2.1e-178 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.805 | 0.729 | 0.504 | 3.5e-178 | |
| TAIR|locus:2087512 | 777 | AT3G14067 "AT3G14067" [Arabido | 0.783 | 0.706 | 0.519 | 4.5e-176 | |
| TAIR|locus:2131566 | 764 | SLP2 "AT4G34980" [Arabidopsis | 0.798 | 0.732 | 0.503 | 4.7e-172 |
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1949 (691.1 bits), Expect = 6.5e-245, Sum P(2) = 6.5e-245
Identities = 377/578 (65%), Positives = 446/578 (77%)
Query: 125 YEEAVGPIDETAESKSPRXXXXXXXXXXXXXXXXVVNGASLFGFASGTARGMAAQARVAT 184
YE +GPIDE+ ES+SPR VV GASL G+ASGTARGMA +ARVA
Sbjct: 190 YESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAV 249
Query: 185 YKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVS 244
YKVCWL GCF SDILA +DKAI D VNV+SMS+GGG++DYYRD VAIGAF AM +GI VS
Sbjct: 250 YKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVS 309
Query: 245 CSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMV 304
CSAGN GP ++S+SNVAPWITTVGAGTLDR+FP LGNGK+F+GVSL+ L ++
Sbjct: 310 CSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLL 369
Query: 305 PIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTN 364
P + A N S+ ++GNLCMTG+LIP KV GKIV+CDRG N+RV+KG VK AGGVGMIL N
Sbjct: 370 PFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILAN 429
Query: 365 TDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAF 424
T + GEELVADA LLP+ VGEKAGD I++Y+++DP P A+I GT +G++PSPVVAAF
Sbjct: 430 TAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAF 489
Query: 425 SSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVS 484
SSRGPN ITP ILKPDLIAPGVNILA WTGA GPTGL SD R V FNIISGTSMSCPHVS
Sbjct: 490 SSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVS 549
Query: 485 GLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAA 544
GLAALLK+ HPEWSP+AI+SALMTTAY T +GK LLDI+TG+PSTPFD GAGHV P A
Sbjct: 550 GLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTA 609
Query: 545 LDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYPSFSVPFET 604
+PGL+YD T +DYL FLCAL+Y+S QI+ + R++ C SK+YS+ D+NYPSF+V +
Sbjct: 610 TNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVD- 668
Query: 605 ASGTWGGVGATSTVKYTRTLTNVGTPTTYMVSVSSQSTSVKILVEPESLSFSRQYEKKSY 664
GVGA KYTRT+T+VG TY V V+S++T VKI VEP L+F EKKSY
Sbjct: 669 ------GVGA---YKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSY 719
Query: 665 VVTFTA-SSMPSGTTSFARLQWSDGKHVVGSPIAFSWT 701
VTFT SS PSG+ SF ++WSDGKHVVGSP+A SWT
Sbjct: 720 TVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISWT 757
|
|
| UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1903 (674.9 bits), Expect = 3.1e-236, Sum P(2) = 3.1e-236
Identities = 367/584 (62%), Positives = 444/584 (76%)
Query: 125 YEEAVGPIDETAESKSPRXXXXXXXXXXXXXXXXVVNGASLFGFASGTARGMAAQARVAT 184
YE A+GP+D T ES+SPR V+GASL GFASGTARGMA +ARVA
Sbjct: 184 YEAAMGPMDTTRESRSPRDDDGHGTHTSSTAAGAAVSGASLLGFASGTARGMAPRARVAV 243
Query: 185 YKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVS 244
YKVCWL GCF SDILAGMD A+ DG V+S+S+GGG DY RD+VAIGAF AM Q + VS
Sbjct: 244 YKVCWLGGCFSSDILAGMDAAVADGCGVLSLSLGGGAADYARDSVAIGAFAAMEQNVLVS 303
Query: 245 CSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMV 304
CSAGN GP +++SNVAPWITTVGAGTLDR+FP YVSLGNGK+++GVSLY+ + L + +
Sbjct: 304 CSAGNAGPGTSTLSNVAPWITTVGAGTLDRDFPAYVSLGNGKNYTGVSLYAGKALPSTPL 363
Query: 305 PIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTN 364
PIV AAN S++++GNLCM G+L P KVAGKIVVCDRG ++RV+KG V+DAGG GM+L+N
Sbjct: 364 PIVYAANASNSTAGNLCMPGTLTPEKVAGKIVVCDRGVSARVQKGFVVRDAGGAGMVLSN 423
Query: 365 TDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAF 424
T + GEELVADA LLP+A VG K G AIK Y++SDP P ATI+ GTQ+ ++PSPVVAAF
Sbjct: 424 TATNGEELVADAHLLPAAGVGAKEGAAIKAYVASDPSPTATIVVAGTQVDVRPSPVVAAF 483
Query: 425 SSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVS 484
SSRGPN +TPEILKPD+IAPGVNILA WTG GPTG+ +D R V+FNIISGTSMSCPHVS
Sbjct: 484 SSRGPNMLTPEILKPDIIAPGVNILAAWTGKAGPTGIAADTRRVAFNIISGTSMSCPHVS 543
Query: 485 GLAALLKAAHPEWSPSAIKSALMTTAYSTN---GNGKTLLDISTGQPSTPFDFGAGHVDP 541
GLAALL++AHPEWSP+A++SALMTTAYST G+ LLD +TG P+TPFD+GAGHVDP
Sbjct: 544 GLAALLRSAHPEWSPAAVRSALMTTAYSTYAGAGDANPLLDAATGAPATPFDYGAGHVDP 603
Query: 542 VAALDPGLVYDATVQDYLDFLCALDYSSFQIKQ-ATNRDFACLSSKTYSLGDVNYPSFSV 600
+A+DPGLVYD DY+DFLCAL+Y+S I A ++ + C K YS+ ++NYPSF+V
Sbjct: 604 ASAVDPGLVYDLGTADYVDFLCALNYTSTMIAAVARSKSYGCTEGKAYSVYNLNYPSFAV 663
Query: 601 PFETASGTWG---GVGATSTVKYTRTLTNVGTPTTYMVSVSSQSTSVKILVEPESLSFSR 657
+ TAS G AT TV + RTLTNVG TY VS ++ V + VEP L+F+
Sbjct: 664 AYSTASSQAAESSGAAAT-TVTHRRTLTNVGAAGTYKVSAAAMP-GVAVAVEPTELAFTS 721
Query: 658 QYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPIAFSWT 701
EKKSY V+FTA S PSGT F RL WSDGKH V SP+AF+WT
Sbjct: 722 AGEKKSYTVSFTAKSQPSGTAGFGRLVWSDGKHSVASPMAFTWT 765
|
|
| UNIPROTKB|Q94H95 OSJNBb0048A17.11 "cDNA clone:J033123P12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1832 (650.0 bits), Expect = 2.0e-232, Sum P(2) = 2.0e-232
Identities = 351/580 (60%), Positives = 431/580 (74%)
Query: 125 YEEAVGPIDETAESKSPRXXXXXXXXXXXXXXXXVVNGASLFGFASGTARGMAAQARVAT 184
YE A GP+D + ES+SPR V GA L G+A+GTA+GMA ARVAT
Sbjct: 194 YEAAKGPVDTSKESRSPRDNDGHGTHTSSTAAGSAVRGADLLGYAAGTAKGMAPHARVAT 253
Query: 185 YKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVS 244
YKVCW+ GCF SDIL M+ A+ DGV+V+S+S+GGG DYYRD++A+GA++AM +GIFVS
Sbjct: 254 YKVCWVGGCFSSDILKAMEVAVNDGVDVLSLSLGGGTADYYRDSIAVGAYSAMERGIFVS 313
Query: 245 CSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMV 304
CSAGN GP + ++SN APWITTVGAGTLDR+FP +V LGNGK++SGVSLYS + L + V
Sbjct: 314 CSAGNAGPGSATLSNGAPWITTVGAGTLDRDFPAHVVLGNGKNYSGVSLYSGKQLPTTPV 373
Query: 305 PIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTN 364
P + A N S++S G LCM+GSLIP KVAGKIV+CDRG N+RV+KG VKDAGG GM+L N
Sbjct: 374 PFIYAGNASNSSMGALCMSGSLIPEKVAGKIVLCDRGTNARVQKGFVVKDAGGAGMVLAN 433
Query: 365 TDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAF 424
T + GEELVADA +LP A VG+KAGD ++ Y SDP P A+I+ GTQ+GIQPSPVVAAF
Sbjct: 434 TAANGEELVADAHVLPGAGVGQKAGDTMRAYALSDPNPTASIVFAGTQVGIQPSPVVAAF 493
Query: 425 SSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVS 484
SSRGPN +TP ILKPDLIAPGVNILA W+G+VGP+GL D R V FNIISGTSMSCPHVS
Sbjct: 494 SSRGPNTVTPGILKPDLIAPGVNILAAWSGSVGPSGLAGDSRRVGFNIISGTSMSCPHVS 553
Query: 485 GLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAA 544
GLAALL+AAH +WSP+AI+SALMTT+Y+ NG +LD++TG P+TP D GAGHVDP A
Sbjct: 554 GLAALLRAAHQDWSPAAIRSALMTTSYNGYPNGNGILDVATGLPATPLDVGAGHVDPSKA 613
Query: 545 LDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDF-ACLSSKTYSLGDVNYPSFSVPFE 603
+DPGLVYD DY+DFLCA+ Y QI T AC ++TY++ +NYPSFSV F
Sbjct: 614 VDPGLVYDIAAADYVDFLCAISYGPMQIAALTKHTTDACSGNRTYAVTALNYPSFSVTFP 673
Query: 604 TASGTWGGVGATSTVKYTRTLTNVGTPTTYMVSVSSQ--STSVKILVEPESLSFSRQYEK 661
GT K+TRT+TNVG P TY V+ S+ ST V + VEP +L+F++ EK
Sbjct: 674 ATGGT---------EKHTRTVTNVGQPGTYKVTASAAAGSTPVTVSVEPSTLTFTKSGEK 724
Query: 662 KSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPIAFSWT 701
+SY V+F A++MPSGT F RL WS HVV SPIA +WT
Sbjct: 725 QSYTVSFAAAAMPSGTNGFGRLVWSSDHHVVSSPIAVTWT 764
|
|
| TAIR|locus:2064696 AT2G05920 "AT2G05920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1577 (560.2 bits), Expect = 1.3e-189, Sum P(2) = 1.3e-189
Identities = 317/574 (55%), Positives = 390/574 (67%)
Query: 130 GPIDETAESKSPRXXXXXXXXXXXXXXXXVVNGASLFGFASGTARGMAAQARVATYKVCW 189
G ES SPR V AS G+A+GTARGMA +ARVATYKVCW
Sbjct: 191 GGFSSKRESVSPRDVDGHGTHTSTTAAGSAVRNASFLGYAAGTARGMATRARVATYKVCW 250
Query: 190 LAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGN 249
GCFGSDILA MD+AI DGV+V+S+S+GGG YYRDT+AIGAF+AM +G+FVSCSAGN
Sbjct: 251 STGCFGSDILAAMDRAILDGVDVLSLSLGGGSAPYYRDTIAIGAFSAMERGVFVSCSAGN 310
Query: 250 GGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDA 309
GP S++NVAPW+ TVGAGTLDR+FP + +LGNGK +GVSLYS + + +V
Sbjct: 311 SGPTRASVANVAPWVMTVGAGTLDRDFPAFANLGNGKRLTGVSLYSGVGMGTKPLELV-- 368
Query: 310 ANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYG 369
N ++SS NLC+ GSL + V GKIVVCDRG N+RVEKG V+DAGG+GMI+ NT + G
Sbjct: 369 YNKGNSSSSNLCLPGSLDSSIVRGKIVVCDRGVNARVEKGAVVRDAGGLGMIMANTAASG 428
Query: 370 EELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGP 429
EELVAD+ LLP+ VG+K GD ++ Y+ SD P A ++ +GT L ++PSPVVAAFSSRGP
Sbjct: 429 EELVADSHLLPAIAVGKKTGDLLREYVKSDSKPTALLVFKGTVLDVKPSPVVAAFSSRGP 488
Query: 430 NPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAAL 489
N +TPEILKPD+I PGVNILAGW+ A+GPTGL+ D R FNI+SGTSMSCPH+SGLA L
Sbjct: 489 NTVTPEILKPDVIGPGVNILAGWSDAIGPTGLDKDSRRTQFNIMSGTSMSCPHISGLAGL 548
Query: 490 LKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGL 549
LKAAHPEWSPSAIKSALMTTAY + L D + S P+ G+GHVDP AL PGL
Sbjct: 549 LKAAHPEWSPSAIKSALMTTAYVLDNTNAPLHDAADNSLSNPYAHGSGHVDPQKALSPGL 608
Query: 550 VYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYPSFSVPFETASGTW 609
VYD + ++Y+ FLC+LDY+ I R S K G +NYPSFSV F
Sbjct: 609 VYDISTEEYIRFLCSLDYTVDHIVAIVKRPSVNCSKKFSDPGQLNYPSFSVLF------- 661
Query: 610 GGVGATSTVKYTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTF 668
G V+YTR +TNVG ++ Y V+V+ + SV I V+P LSF EKK Y VTF
Sbjct: 662 ---GGKRVVRYTREVTNVGAASSVYKVTVNG-APSVGISVKPSKLSFKSVGEKKRYTVTF 717
Query: 669 TASSMPSGTTS--FARLQWSDGKHVVGSPIAFSW 700
+ S T F + WS+ +H V SP+AFSW
Sbjct: 718 VSKKGVSMTNKAEFGSITWSNPQHEVRSPVAFSW 751
|
|
| UNIPROTKB|Q7XTY8 OSJNBa0019K04.9 "Os04g0573300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1474 (523.9 bits), Expect = 8.9e-182, Sum P(2) = 8.9e-182
Identities = 301/581 (51%), Positives = 388/581 (66%)
Query: 125 YEEAVGPIDETAESKSPRXXXXXXXXXXXXXXXXVVNGASLFGFASGTARGMAAQARVAT 184
YE + GPI+ET E KSPR V A+L+G+A G ARGMA +ARVA
Sbjct: 203 YEASSGPINETTELKSPRDQDGHGTHTAATAAGSPVQDANLYGYAGGVARGMAPRARVAA 262
Query: 185 YKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVS 244
YKVCW GCF SDILA +D+A+ DGV+V+S+S+GGG + YY D+++I +F AM G+FV+
Sbjct: 263 YKVCWAGGCFSSDILAAVDRAVSDGVDVLSISLGGGASRYYLDSLSIASFGAMQMGVFVA 322
Query: 245 CSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSR-RPLSGS- 302
CSAGN GP S++N++PWITTVGA T+DR+FP V+LGNG + +GVSLY R LS
Sbjct: 323 CSAGNAGPDPISLTNLSPWITTVGASTMDRDFPATVTLGNGANITGVSLYKGLRNLSPQE 382
Query: 303 MVPIVD-AANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMI 361
P+V N S +LC+ G+L P V+GKIV+CDRG + RV+KG VK+AGG+GMI
Sbjct: 383 QYPVVYLGGNSSMPDPRSLCLEGTLQPHDVSGKIVICDRGISPRVQKGQVVKEAGGIGMI 442
Query: 362 LTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVV 421
L NT + GEELVAD+ LLP+ VGE G A K+Y S P P AT+ GT+LGI+PSPVV
Sbjct: 443 LANTAANGEELVADSHLLPAVAVGEAEGIAAKSYSKSAPKPTATLSFGGTKLGIRPSPVV 502
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
AAFSSRGPN +T EILKPD++APGVNILA W+G P+ L SD R V FNI+SGTSMSCP
Sbjct: 503 AAFSSRGPNILTLEILKPDVVAPGVNILAAWSGDASPSSLSSDSRRVGFNILSGTSMSCP 562
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDP 541
HV+G+AAL+KA+HP+WSP+ IKSALMTTAY + + + D +TG+ STPF+ GAGH+ P
Sbjct: 563 HVAGVAALIKASHPDWSPAQIKSALMTTAYVHDNTYRPMKDAATGKASTPFEHGAGHIHP 622
Query: 542 VAALDPGLVYDATVQDYLDFLCALDYSSFQIKQAT-NRDFACLSSKTYSLGDVNYPSFSV 600
V AL PGLVYD DYL+FLC + Q++ T N + C + + S D+NYP+ SV
Sbjct: 623 VRALTPGLVYDIGQADYLEFLCTQHMTPMQLRTFTKNSNMTCRHTFS-SASDLNYPAISV 681
Query: 601 PFETASGTWGGVGATSTVKYTRTLTNVGTPT-TYMVSVSSQSTSVKILVEPESLSFSRQY 659
F TV+ RT+TNVG P+ TY V V+ + ++VEP +L F
Sbjct: 682 VFADQPSK------ALTVR--RTVTNVGPPSSTYHVKVT-KFKGADVIVEPNTLHFVSTN 732
Query: 660 EKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPIAFSW 700
+K SY VT T + F L WSDG H+V SP+ +W
Sbjct: 733 QKLSYKVTVTTKAAQKAP-EFGALSWSDGVHIVRSPVVLTW 772
|
|
| TAIR|locus:2165366 SBT1.3 "AT5G51750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1438 (511.3 bits), Expect = 3.4e-180, Sum P(2) = 3.4e-180
Identities = 295/581 (50%), Positives = 381/581 (65%)
Query: 125 YEEAVGPIDETAESKSPRXXXXXXXXXXXXXXXXVVNGASLFGFASGTARGMAAQARVAT 184
YE A G IDE E KSPR V GA+LFGFA GTARGMA +ARVA
Sbjct: 205 YEAATGKIDEELEYKSPRDRDGHGTHTAATVAGSPVKGANLFGFAYGTARGMAQKARVAA 264
Query: 185 YKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVS 244
YKVCW+ GCF SDIL+ +D+A+ DGV V+S+S+GGG++ Y RD+++I F AM G+FVS
Sbjct: 265 YKVCWVGGCFSSDILSAVDQAVADGVQVLSISLGGGVSTYSRDSLSIATFGAMEMGVFVS 324
Query: 245 CSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPL--SGS 302
CSAGNGGP S++NV+PWITTVGA T+DR+FP V +G ++F GVSLY R +
Sbjct: 325 CSAGNGGPDPISLTNVSPWITTVGASTMDRDFPATVKIGTMRTFKGVSLYKGRTVLPKNK 384
Query: 303 MVPIVDAA-NVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMI 361
P+V N SS + C+ G+L VAGKIV+CDRG RV+KG VK AGG+GM+
Sbjct: 385 QYPLVYLGRNASSPDPTSFCLDGALDRRHVAGKIVICDRGVTPRVQKGQVVKRAGGIGMV 444
Query: 362 LTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVV 421
LTNT + GEELVAD+ +LP+ VGEK G IK Y + A++ GT++GI+PSPVV
Sbjct: 445 LTNTATNGEELVADSHMLPAVAVGEKEGKLIKQYAMTSKKATASLEILGTRIGIKPSPVV 504
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
AAFSSRGPN ++ EILKPDL+APGVNILA WTG + P+ L SD R V FNI+SGTSMSCP
Sbjct: 505 AAFSSRGPNFLSLEILKPDLLAPGVNILAAWTGDMAPSSLSSDPRRVKFNILSGTSMSCP 564
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDP 541
HVSG+AAL+K+ HP+WSP+AIKSALMTTAY + K L D S PS+P+D GAGH+DP
Sbjct: 565 HVSGVAALIKSRHPDWSPAAIKSALMTTAYVHDNMFKPLTDASGAAPSSPYDHGAGHIDP 624
Query: 542 VAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNR-DFACLSSKTYSLGDVNYPSFSV 600
+ A DPGLVYD Q+Y +FLC D S Q+K T + C + + G++NYP+ S
Sbjct: 625 LRATDPGLVYDIGPQEYFEFLCTQDLSPSQLKVFTKHSNRTCKHTLAKNPGNLNYPAISA 684
Query: 601 PFETASGTWGGVGATSTVKYTRTLTNVGTP-TTYMVSVSSQSTSVKILVEPESLSFSRQY 659
F + T++ RT+TNVG ++Y VSVS + V+P++L+F+ ++
Sbjct: 685 LFPENTHV-----KAMTLR--RTVTNVGPHISSYKVSVSPFK-GASVTVQPKTLNFTSKH 736
Query: 660 EKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPIAFSW 700
+K SY VTF + F L W H V SP+ +W
Sbjct: 737 QKLSYTVTFR-TRFRMKRPEFGGLVWKSTTHKVRSPVIITW 776
|
|
| UNIPROTKB|Q69P78 OJ1344_B01.33 "Putative serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1515 (538.4 bits), Expect = 2.1e-178, Sum P(2) = 2.1e-178
Identities = 303/568 (53%), Positives = 384/568 (67%)
Query: 137 ESKSPRXXXXXXXXXXXXXXXXVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGS 196
E SPR VV A L G+A GTARGMA ARVA YKVCW GCF S
Sbjct: 207 EFSSPRDHDGHGTHTASTAAGAVVADAGLLGYAEGTARGMAPGARVAAYKVCWRQGCFSS 266
Query: 197 DILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANS 256
DILAGM+KAI+DGV+V+S+S+GGG RD +A+GA A +GI V+CSAGN GP +S
Sbjct: 267 DILAGMEKAIDDGVDVLSLSLGGGAFPLSRDPIAVGALAATRRGIVVACSAGNSGPSPSS 326
Query: 257 ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTS 316
+ N APW+ TVGAGTLDRNFP Y LGNG++ +G+SLYS L +P+V + + S
Sbjct: 327 LVNTAPWVITVGAGTLDRNFPAYAELGNGETHAGMSLYSGDGLGDEKLPVVYNKGIRAGS 386
Query: 317 SGN-LCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVAD 375
+ + LCM G+L A V GK+V+CDRGGNSRVEKG+ VK AGGVGM+L NT GEE+VAD
Sbjct: 387 NASKLCMEGTLDAAAVKGKVVLCDRGGNSRVEKGLVVKQAGGVGMVLANTAQSGEEVVAD 446
Query: 376 AQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPE 435
+ LLP+ VG K+GDAI+ Y+ SD + GT L ++P+PVVAAFSSRGPN +
Sbjct: 447 SHLLPAVAVGAKSGDAIRRYVESDADAEVGLTFAGTALDVRPAPVVAAFSSRGPNRQVAQ 506
Query: 436 ILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHP 495
+LKPD+I PGVNILAGWTG+VGPTGL D+R FNI+SGTSMSCPH+SGLAA +KAAHP
Sbjct: 507 LLKPDVIGPGVNILAGWTGSVGPTGLTVDERRSPFNILSGTSMSCPHISGLAAFVKAAHP 566
Query: 496 EWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATV 555
+WSPSAIKSALMTTAY+ + G ++D ++ +TP+ GAGHVDPV AL PGLVYD +V
Sbjct: 567 DWSPSAIKSALMTTAYTVDNTGSPIVDAASNTTATPWSIGAGHVDPVKALSPGLVYDTSV 626
Query: 556 QDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGAT 615
DY+ FLC++ S Q++ T K S GD+NYPSFSV F S + +
Sbjct: 627 DDYVAFLCSVGTSPPQVQAITAAPNVTCQRKLSSPGDLNYPSFSVVFGRRSSS----SRS 682
Query: 616 STVKYTRTLTNVGTP-TTYMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMP 674
+TVKY R LTNVG + Y V+ S + + V+P L+F + +K Y VTF S+ P
Sbjct: 683 TTVKYRRELTNVGDGRSVYTARVTGPS-DIAVAVKPARLAFKKAGDKLRYTVTFK-STTP 740
Query: 675 SGTT--SFARLQWSDGKHVVGSPIAFSW 700
G T +F L WS+G+H V SPI+++W
Sbjct: 741 GGPTDAAFGWLTWSNGEHDVRSPISYTW 768
|
|
| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1416 (503.5 bits), Expect = 3.5e-178, Sum P(2) = 3.5e-178
Identities = 296/587 (50%), Positives = 385/587 (65%)
Query: 125 YEEAVGPIDETAESKSPRXXXXXXXXXXXXXXXXVVNGASLFGFASGTARGMAAQARVAT 184
YE G ++ET E +SPR V AS G+A G A GMA +AR+A
Sbjct: 188 YEATNGKMNETTEFRSPRDSDGHGTHTASISAGRYVFPASTLGYAHGVAAGMAPKARLAA 247
Query: 185 YKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVS 244
YKVCW +GC+ SDILA D A+ DGV+V+S+S+GG + YY D +AIGAF A+ +GIFVS
Sbjct: 248 YKVCWNSGCYDSDILAAFDTAVADGVDVISLSVGGVVVPYYLDAIAIGAFGAIDRGIFVS 307
Query: 245 CSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLS-GSM 303
SAGNGGP A +++NVAPW+TTVGAGT+DR+FP V LGNGK SGVS+Y L G M
Sbjct: 308 ASAGNGGPGALTVTNVAPWMTTVGAGTIDRDFPANVKLGNGKMISGVSVYGGPGLDPGRM 367
Query: 304 VPIVDAANVSSTS--SGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMI 361
P+V ++ S +LC+ GSL P V GKIV+CDRG NSR KG V+ GG+GMI
Sbjct: 368 YPLVYGGSLLGGDGYSSSLCLEGSLDPNLVKGKIVLCDRGINSRATKGEIVRKNGGLGMI 427
Query: 362 LTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS------SDPGPMATIISRGTQLGI 415
+ N GE LVAD +LP+ +VG GD I+ YIS S P ATI+ +GT+LGI
Sbjct: 428 IANGVFDGEGLVADCHVLPATSVGASGGDEIRRYISESSKSRSSKHPTATIVFKGTRLGI 487
Query: 416 QPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISG 475
+P+PVVA+FS+RGPNP TPEILKPD+IAPG+NILA W +GP+G+ SD R FNI+SG
Sbjct: 488 RPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDRIGPSGVTSDNRRTEFNILSG 547
Query: 476 TSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFG 535
TSM+CPHVSGLAALLKAAHP+WSP+AI+SAL+TTAY+ + +G+ ++D STG S+ D+G
Sbjct: 548 TSMACPHVSGLAALLKAAHPDWSPAAIRSALITTAYTVDNSGEPMMDESTGNTSSVMDYG 607
Query: 536 AGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYS-LGDVN 594
+GHV P A+DPGLVYD T DY++FLC +Y+ I T R C ++ +G++N
Sbjct: 608 SGHVHPTKAMDPGLVYDITSYDYINFLCNSNYTRTNIVTITRRQADCDGARRAGHVGNLN 667
Query: 595 YPSFSVPFETASGTWGGVGATSTVKYTRTLTNVG-TPTTYMVSVSSQSTSVKILVEPESL 653
YPSFSV F+ G ST + RT+TNVG + + Y + + + + VEPE L
Sbjct: 668 YPSFSVVFQQY-----GESKMST-HFIRTVTNVGDSDSVYEIKIRPPRGTT-VTVEPEKL 720
Query: 654 SFSRQYEKKSYVVTF--TASSMPSGTTSF--ARLQWSDGKHVVGSPI 696
SF R +K S+VV T + G T+ + WSDGK V SP+
Sbjct: 721 SFRRVGQKLSFVVRVKTTEVKLSPGATNVETGHIVWSDGKRNVTSPL 767
|
|
| TAIR|locus:2087512 AT3G14067 "AT3G14067" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1410 (501.4 bits), Expect = 4.5e-176, Sum P(2) = 4.5e-176
Identities = 300/578 (51%), Positives = 377/578 (65%)
Query: 137 ESKSPRXXXXXXXXXXXXXXXXVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGS 196
ES+SPR VV ASL+ +A GTA GMA++AR+A YK+CW GC+ S
Sbjct: 207 ESRSPRDTEGHGTHTASTAAGSVVANASLYQYARGTATGMASKARIAAYKICWTGGCYDS 266
Query: 197 DILAGMDKAIEDGVNVMSMSIG--GGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA 254
DILA MD+A+ DGV+V+S+S+G G +Y+ D++AIGAF A GI VSCSAGN GP
Sbjct: 267 DILAAMDQAVADGVHVISLSVGASGSAPEYHTDSIAIGAFGATRHGIVVSCSAGNSGPNP 326
Query: 255 NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSS 314
+ +N+APWI TVGA T+DR F G+GK F+G SLY+ L S + +V + + S
Sbjct: 327 ETATNIAPWILTVGASTVDREFAANAITGDGKVFTGTSLYAGESLPDSQLSLVYSGDCGS 386
Query: 315 TSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVA 374
LC G L + V GKIV+CDRGGN+RVEKG VK AGG GMIL NT GEEL A
Sbjct: 387 ----RLCYPGKLNSSLVEGKIVLCDRGGNARVEKGSAVKLAGGAGMILANTAESGEELTA 442
Query: 375 DAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQP-SPVVAAFSSRGPNPIT 433
D+ L+P+ VG KAGD I++YI + P A I GT +G P SP VAAFSSRGPN +T
Sbjct: 443 DSHLVPATMVGAKAGDQIRDYIKTSDSPTAKISFLGTLIGPSPPSPRVAAFSSRGPNHLT 502
Query: 434 PEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAA 493
P ILKPD+IAPGVNILAGWTG VGPT L+ D R V FNIISGTSMSCPHVSGLAALL+ A
Sbjct: 503 PVILKPDVIAPGVNILAGWTGMVGPTDLDIDPRRVQFNIISGTSMSCPHVSGLAALLRKA 562
Query: 494 HPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDA 553
HP+WSP+AIKSAL+TTAY +G+ + D++TG+ S F GAGHVDP AL+PGLVYD
Sbjct: 563 HPDWSPAAIKSALVTTAYDVENSGEPIEDLATGKSSNSFIHGAGHVDPNKALNPGLVYDI 622
Query: 554 TVQDYLDFLCALDYSSFQI----KQATNRDFACLSSKTYSLGDVNYPSFSVPFETASGTW 609
V++Y+ FLCA+ Y I + T D AC +SK + GD+NYPSFSV F +
Sbjct: 623 EVKEYVAFLCAVGYEFPGILVFLQDPTLYD-ACETSKLRTAGDLNYPSFSVVFAST---- 677
Query: 610 GGVGATSTVKYTRTLTNVGT--PTTYMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVT 667
G V VKY R + NVG+ Y V V S + +V+I V P L+FS++ Y VT
Sbjct: 678 GEV-----VKYKRVVKNVGSNVDAVYEVGVKSPA-NVEIDVSPSKLAFSKEKSVLEYEVT 731
Query: 668 FTASSMPSGTTS-----FARLQWSDGKHVVGSPIAFSW 700
F + + G S F ++W+DG+HVV SP+A W
Sbjct: 732 FKSVVLGGGVGSVPGHEFGSIEWTDGEHVVKSPVAVQW 769
|
|
| TAIR|locus:2131566 SLP2 "AT4G34980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1392 (495.1 bits), Expect = 4.7e-172, Sum P(2) = 4.7e-172
Identities = 291/578 (50%), Positives = 381/578 (65%)
Query: 129 VGPIDETAESKSPRXXXXXXXXXXXXXXXXVVNGASLFGFASGTARGMAAQARVATYKVC 188
+G I++T E SPR AS+ G+ASG A+G+A +AR+A YKVC
Sbjct: 187 IGGINKTVEFLSPRDADGHGTHTSSTAAGRHAFKASMSGYASGVAKGVAPKARIAAYKVC 246
Query: 189 WL-AGCFGSDILAGMDKAIEDGVNVMSMSIGGG--LTD-YYRDTVAIGAFTAMAQGIFVS 244
W +GC SDILA D A+ DGV+V+S+SIGGG +T YY D +AIG++ A ++GIFVS
Sbjct: 247 WKDSGCLDSDILAAFDAAVRDGVDVISISIGGGDGITSPYYLDPIAIGSYGAASKGIFVS 306
Query: 245 CSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMV 304
SAGN GP S++N+APW+TTVGA T+DRNFP LG+G GVSLY+ PL+G M
Sbjct: 307 SSAGNEGPNGMSVTNLAPWVTTVGASTIDRNFPADAILGDGHRLRGVSLYAGVPLNGRMF 366
Query: 305 PIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTN 364
P+V S SS +LCM +L P +V GKIV+CDRG + RV KG+ VK AGGVGMIL N
Sbjct: 367 PVVYPGK-SGMSSASLCMENTLDPKQVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILAN 425
Query: 365 TDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAF 424
S GE LV DA L+P+ VG GD IK Y SS P P+A+I RGT +GI+P+PV+A+F
Sbjct: 426 GASNGEGLVGDAHLIPACAVGSNEGDRIKAYASSHPNPIASIDFRGTIVGIKPAPVIASF 485
Query: 425 SSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVS 484
S RGPN ++PEILKPDLIAPGVNILA WT AVGPTGL SD R FNI+SGTSM+CPHVS
Sbjct: 486 SGRGPNGLSPEILKPDLIAPGVNILAAWTDAVGPTGLPSDPRKTEFNILSGTSMACPHVS 545
Query: 485 GLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAA 544
G AALLK+AHP+WSP+ I+SA+MTT + + ++L+D STG+ +TP+D+G+GH++ A
Sbjct: 546 GAAALLKSAHPDWSPAVIRSAMMTTTNLVDNSNRSLIDESTGKSATPYDYGSGHLNLGRA 605
Query: 545 LDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYPSFSVPFET 604
++PGLVYD T DY+ FLC++ Y I+ T C +++ S G++NYPS + F T
Sbjct: 606 MNPGLVYDITNDDYITFLCSIGYGPKTIQVITRTPVRCPTTRKPSPGNLNYPSITAVFPT 665
Query: 605 ASGTWGGVGATSTVKYTRTLTNVG-TPTTYMVSVSSQSTSVKILVEPESLSFSRQYEKKS 663
G+ + TV RT TNVG Y + S V + V+P L F+ +++S
Sbjct: 666 NRR---GL-VSKTV--IRTATNVGQAEAVYRARIESPR-GVTVTVKPPRLVFTSAVKRRS 718
Query: 664 YVVTFTASS--MPSGTTS--FARLQWSDG-KHVVGSPI 696
Y VT T ++ + G T F + W DG KHVV SPI
Sbjct: 719 YAVTVTVNTRNVVLGETGAVFGSVTWFDGGKHVVRSPI 756
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O65351 | SUBL_ARATH | 3, ., 4, ., 2, 1, ., - | 0.6492 | 0.9857 | 0.9128 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 701 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 9e-90 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 2e-38 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-34 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-25 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-18 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 4e-18 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-17 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 7e-16 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-15 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 1e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-14 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 4e-14 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 7e-14 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 3e-13 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 5e-13 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-12 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-12 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-12 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 4e-12 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 4e-12 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 2e-11 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 8e-11 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-10 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 2e-10 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 2e-10 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 3e-10 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-09 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 2e-09 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 3e-09 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 3e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 3e-08 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 3e-08 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 4e-08 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 8e-08 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 2e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 4e-07 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 7e-07 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 1e-06 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 2e-06 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 9e-06 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 1e-05 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 1e-05 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 1e-05 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 4e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 4e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 8e-05 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-04 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 3e-04 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 4e-04 | |
| cd04056 | 361 | cd04056, Peptidases_S53, Peptidase domain in the S | 4e-04 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 5e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 6e-04 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 9e-04 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 0.001 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 0.004 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 282 bits (723), Expect = 9e-90
Identities = 119/236 (50%), Positives = 148/236 (62%), Gaps = 26/236 (11%)
Query: 63 YELHTTRTPEFLGLGKSETLFPT--SEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGW 120
Y+LHTTR+P+FLGL + + +I+GVLDTG+WPE SF D G GP P W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 121 KGV-------------------WY----EEAVGPIDETAESKSPRDDDGHGTHTSTTAAG 157
G Y +A G + E +SPRD DGHGTHT++TAAG
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 158 SVVNGASLFGFASGTARGMAAQARVATYKVCW-LAGCFGSDILAGMDKAIEDGVNVMSMS 216
+VV AS+ GFA GTA G+A +AR+A YKVCW GCFGSDILA +D+AI DGV+V+S S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180
Query: 217 IGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTL 272
IGGG D Y D +AI A+ GIFV+ SAGN GP A+++ NVAPW+TTV A TL
Sbjct: 181 IGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 2e-38
Identities = 64/129 (49%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 279 YVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVC 338
V+LGNGK+ G SLY P+V + S +LC+ GSL P+KV GKIV+C
Sbjct: 1 VVTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLC 57
Query: 339 DRGGN-SRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS 397
DRGGN SRV KG VK AGG GMIL N + G ++VADA +LP+ +V + G AI +YI+
Sbjct: 58 DRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYIN 117
Query: 398 SDPGPMATI 406
S P ATI
Sbjct: 118 STSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-34
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 437 LKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPE 496
LKPD+ APGV+ILA WT D R F ISGTSM+ PHV+G+AALLK+AHP+
Sbjct: 236 LKPDIAAPGVDILAAWTP---EGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 497 WSPSAIKSALMTTAY 511
WSP+AIKSALMTTAY
Sbjct: 293 WSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 58/154 (37%), Positives = 76/154 (49%), Gaps = 22/154 (14%)
Query: 393 KNYISSDPGPMATIISRGTQLGIQPS--PVVAAFSSRGPNPITPEILKPDLIAPGVNILA 450
Y P + I+ G + V SSRGP P + +KPD++APGV+I++
Sbjct: 162 APYTIGSPATAPSAITVGASTVADVAEADTVGPSSSRGP-PTSDSAIKPDIVAPGVDIMS 220
Query: 451 GWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
G S + + GTSM+ PHV+G AALLK AHP+WSP+ IK+ALM TA
Sbjct: 221 TAPG--------SGTGYARMS---GTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTA 269
Query: 511 YSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAA 544
K L D S G GAG VD + A
Sbjct: 270 -------KPLYD-SDGVVYPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 415 IQPSPVVAAFSSRGPNPITPE-ILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNII 473
++ FSSRGP T + +KPD++APG NI++ + P +
Sbjct: 174 GPHDDGISYFSSRGP---TGDGRIKPDVVAPGENIVSCRSPGGNPGAG-VGSGYFEM--- 226
Query: 474 SGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511
SGTSM+ PHVSG ALL A+P +P +K L TA
Sbjct: 227 SGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 4e-18
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 39/210 (18%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
+ V VLDTG+ FD + ++ +P DD+GHGTH
Sbjct: 4 ITVAVLDTGIDAPHPDFDGRIIRFADF-------------VNTVNGRTTPYDDNGHGTHV 50
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGMDKAIE 207
+ AGS G + ++G +G+A A + KV G SDI+AG+D +E
Sbjct: 51 AGIIAGS---GRA----SNGKYKGVAPGANLVGVKV---LDDSGSGSESDIIAGIDWVVE 100
Query: 208 D----GVNVMSMSIGGGLTDYYRDTVAIGAFTAM-AQGIFVSCSAGNGGPYANSISN--V 260
+ + V+++S+G Y + A + GI V +AGN GP +I++
Sbjct: 101 NNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGN 160
Query: 261 APWITTVGAGTLDRNFPTYVSLGNGKSFSG 290
+P + TVGA +D N P + FS
Sbjct: 161 SPKVITVGA--VDDNGPHDDGI---SYFSS 185
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 30/241 (12%)
Query: 90 SEVIVGVLDTGVWPEIKSFDDTGMGP--VPRGWKGV---WYEEAVGPIDETAESKSPRDD 144
V V V+DTG+ G V G+ V + P S D
Sbjct: 2 KGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDA 61
Query: 145 DGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGS--DILAGM 202
GHGTH + AG NG ++ T +G+A +A + YKV G G+ I+A +
Sbjct: 62 TGHGTHVAGIIAG---NGVNVG-----TIKGVAPKADLYAYKVLG-PGGSGTTDVIIAAI 112
Query: 203 DKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISN--V 260
++A++DG++V+++S+G + D AI A+ G+ V +AGN GP +I +
Sbjct: 113 EQAVDDGMDVINLSLGSSVNGPD-DPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPAT 171
Query: 261 APWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMV-PIVDA--ANVSSTSS 317
AP TVGA T+ V+ + G S P S S + P + A ++ ST+
Sbjct: 172 APSAITVGASTV-----ADVAEAD---TVGPSSSRGPPTSDSAIKPDIVAPGVDIMSTAP 223
Query: 318 G 318
G
Sbjct: 224 G 224
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 7e-16
Identities = 55/202 (27%), Positives = 76/202 (37%), Gaps = 24/202 (11%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
V V V+DTGV P+ D G G D P D +GHGTH
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLF-GGGDGGN---------DDDDNENGPTDPDDGNGHGTHV 50
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED-G 209
+ A S NG G+A A++ KV G SDI A +D A D G
Sbjct: 51 AGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQG 101
Query: 210 VNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISN---VAPWITT 266
+V+++S+GG + + G+ V +AGN GP + +P +
Sbjct: 102 ADVINLSLGGPGSPPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIA 161
Query: 267 VGAGTLDRNFPTYVSLGNGKSF 288
VGA D + S G
Sbjct: 162 VGAVDRDGTPASPSSNGGAGVD 183
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-15
Identities = 59/192 (30%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 332 AGKIVVCDRGGNSRVEKGVE---VKDAGGVGMILTNTDS-------YGEELVADAQLLPS 381
GK++ G S++ G+E KDA V M L T E L L
Sbjct: 73 HGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSNQTGALFV 132
Query: 382 ANVGEKAGDAIKNYISSDPGPMATIISRGTQL--GIQPSPVVAAFSSRGPNPITPEILKP 439
+ G + + S+ + R + A+ S +P E KP
Sbjct: 133 VSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSFGSSGASLVSAPDSP-PDEYTKP 191
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D+ APGV++ + GA G +SGTSM+ PHV+G+AALL AAHP+ SP
Sbjct: 192 DVAAPGVDVYSARQGANGDGQYTR---------LSGTSMAAPHVAGVAALLAAAHPDLSP 242
Query: 500 SAIKSALMTTAY 511
IK AL TAY
Sbjct: 243 EQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-15
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 1 MPATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPE 60
A F+ H W+ SS + +A A++LY+YK+ +GF+ +LT +EAE L+K P + V P+
Sbjct: 12 KAAVFSSHKSWHASSKEE-AAGASILYSYKHGFNGFAAKLTEEEAEKLRKHPDVEYVEPD 70
Query: 61 VRYELH 66
ELH
Sbjct: 71 QVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 2e-14
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 420 VVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMS 479
A+FSS GP +L APGV+IL+ + + +SGTSM+
Sbjct: 161 NRASFSSTGPEV--------ELAAPGVDILSTYPNN-------------DYAYLSGTSMA 199
Query: 480 CPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
PHV+G+AAL+ + PE + + ++ AL T
Sbjct: 200 TPHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 20/94 (21%)
Query: 417 PSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGT 476
+ +A+FS+ G + DL APGV+IL+ G + +SGT
Sbjct: 185 SNDALASFSNYGKKTV-------DLAAPGVDILSTSPGG-------------GYGYMSGT 224
Query: 477 SMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
SM+ PHV+G AALL + +P + + IK A++++A
Sbjct: 225 SMATPHVAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 7e-14
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 16/129 (12%)
Query: 389 GDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNI 448
GD N SDP II+ G + + +A FS+ G KPD++APG NI
Sbjct: 148 GDYADNNPVSDPASANNIITVG---AVTENGTIADFSNYGGPVDGI---KPDIVAPGGNI 201
Query: 449 LAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMT 508
L+ G D ++ SGTSM+ P V+G AALL +A+P +P +++ L+T
Sbjct: 202 LSSGPG--------GDLG--GYDSHSGTSMAAPLVAGAAALLLSANPSLTPETLRALLVT 251
Query: 509 TAYSTNGNG 517
TA G
Sbjct: 252 TATDLGSMG 260
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-13
Identities = 52/178 (29%), Positives = 69/178 (38%), Gaps = 22/178 (12%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
V V VLDTGV + W +E D GHGTH
Sbjct: 2 VTVAVLDTGVDADHPDLAGR-----VAQWADF--DENRRISAT-----EVFDAGGHGTHV 49
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVN 211
S T G G + G+A +A + KV G S I+AGM+ A+E +
Sbjct: 50 SGTIGGGGAKGVYI---------GVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDAD 100
Query: 212 VMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGA 269
V+SMS+GG A+ A + +FV SAGN G + A +VGA
Sbjct: 101 VVSMSLGGTYYSEDPLEEAVEALSNQTGALFVV-SAGNEGHGTSGSPGSAYAALSVGA 157
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 424 FSSRGPNPITPE-ILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPH 482
FSS GP T E LKPD+ APG NIL+ + A G + ++SGTSM+ P+
Sbjct: 191 FSSWGP---TNELYLKPDVAAPGGNILSTYPLAGG-----------GYAVLSGTSMATPY 236
Query: 483 VSGLAALLKAA-HPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDP 541
V+G AALL A H + SP+ ++ L +TA + + + GAG V+
Sbjct: 237 VAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSD---GTSALPDLAPVAQQGAGLVNA 293
Query: 542 VAALD 546
AL
Sbjct: 294 YKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 15/79 (18%)
Query: 420 VVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMS 479
V+A FSSRGP+ +KPD+ APGVNI + G + SGTSM+
Sbjct: 186 VLADFSSRGPSTYGR--IKPDISAPGVNIRSAVPG-------------GGYGSSSGTSMA 230
Query: 480 CPHVSGLAALLKAAHPEWS 498
PHV+G+AALL +A+P
Sbjct: 231 APHVAGVAALLWSANPSLI 249
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 58/222 (26%), Positives = 83/222 (37%), Gaps = 35/222 (15%)
Query: 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHG 148
S V V V+DTGV P D G+ + V DD+GHG
Sbjct: 27 GSGVTVAVVDTGVDPT---HPDLLKVKFVLGY------DFVD------NDSDAMDDNGHG 71
Query: 149 THTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGS----DILAGMDK 204
TH + A + NG G A G+A +A++ KV GS DI G+
Sbjct: 72 THVAGIIAAATNNG---TGVA-----GVAPKAKIMPVKVL---DANGSGSLADIANGIRY 120
Query: 205 AIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWI 264
A + G V+++S+GGG + A +G+ V +AGN G + S P
Sbjct: 121 AADKGAKVINLSLGGG---LGSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGA 177
Query: 265 TTVGAGTLDRNFPTYVSLGNGKSFS--GVSLYSRRPLSGSMV 304
V A D ++ + G S G + S P
Sbjct: 178 IAVAATDQDDKRASFSNYGKWVDVSAPGGGILSTTPDGDYAY 219
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 31/199 (15%)
Query: 93 IVGVLDTGVWPEIKSFDDTGMGPVPR-GWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
VGVLDTG+ +G R G+ V + P D D++GHGTH
Sbjct: 1 TVGVLDTGIDVNHPDLSGRYIGLAYRNGYDFVDNDPDPTPDD---------DNNGHGTHV 51
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSD--ILAGMDKAIE-- 207
+ A NG+ G A A++ + KV L G G+D + ++ A E
Sbjct: 52 AGIIAAGDNNGSGGVGVAPN--------AKLESVKV--LPGSGGTDSELAGAIEWAAERP 101
Query: 208 DGVNVMSMSIGGGLT--DYYRDTVAIGAF-TAMAQGIFVSCSAGNGGPYA--NSISNVAP 262
+ + V++MS+G + + A A +G +AGNGG YA N +S+ A
Sbjct: 102 NDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYADNNPVSDPAS 161
Query: 263 W--ITTVGAGTLDRNFPTY 279
I TVGA T + +
Sbjct: 162 ANNIITVGAVTENGTIADF 180
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 3e-12
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 11/72 (15%)
Query: 438 KPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEW 497
D+ APG +IL+ T G + +SGTSM+ P V+G+AALL +A+P+
Sbjct: 181 GVDIAAPGGDILSSPTTGGG-----------GYATLSGTSMAAPIVAGVAALLLSANPDL 229
Query: 498 SPSAIKSALMTT 509
+P+ +K+AL++T
Sbjct: 230 TPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 18/103 (17%)
Query: 418 SPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTS 477
S VA+FSSRGP +KPDL+APG IL+ +G G ++ SGTS
Sbjct: 198 SDTVASFSSRGPT--YDGRIKPDLVAPGTGILSARSGGGGIGDTSDS----AYTSKSGTS 251
Query: 478 MSCPHVSGLAALL----------KAAHPEWSPSAIKSALMTTA 510
M+ P V+G AALL +P S + +K+ L+ +A
Sbjct: 252 MATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLINSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 4e-12
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 15/70 (21%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A FS RGP +KPD+ APGVNIL P G + SGTS++
Sbjct: 359 IAIFSGRGPTR--DGRIKPDIAAPGVNILT-----ASPGG--------GYTTRSGTSVAA 403
Query: 481 PHVSGLAALL 490
V+G ALL
Sbjct: 404 AIVAGACALL 413
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D+ APGV+IL+ W G T +SGTSM+ PHV+GLAA L + P+ SP
Sbjct: 194 DIFAPGVDILSAWIG--SDTA---------TATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 500 SAIKSALMTTA 510
+ +K+ L+ A
Sbjct: 243 AEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 8e-11
Identities = 45/164 (27%), Positives = 64/164 (39%), Gaps = 36/164 (21%)
Query: 382 ANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDL 441
A G GD K + P +++ G I ++FS GP DL
Sbjct: 155 AAAGNTGGDGQKTTVVY-PAWYPGVLAVG---SIDRDGTPSSFSLPGP--------WVDL 202
Query: 442 IAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSA 501
APG NI++ G G SGTS + P VSG AAL+++ P+ + +
Sbjct: 203 AAPGENIVSLSPGGDGLA------------TTSGTSFAAPFVSGTAALVRSRFPDLTAAQ 250
Query: 502 IKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAAL 545
++ + TA G+ G G VDPVAAL
Sbjct: 251 VRRRIEATADHPARGGRD------------DYVGYGVVDPVAAL 282
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D+ APG IL+ + +SGTSM+ PHV+G+AALL + P S
Sbjct: 200 DVSAPGGGILSTTPDGD-------------YAYMSGTSMATPHVAGVAALLYSQGP-LSA 245
Query: 500 SAIKSALMTTA 510
S ++ AL TA
Sbjct: 246 SEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 38/150 (25%)
Query: 397 SSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAV 456
SDP P T S R P P + KPD+ AP G
Sbjct: 163 GSDPAPGGTPSSFDPV------------GIRLPTPEVRQ--KPDVTAP--------DGVN 200
Query: 457 GPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGN 516
G + D +F GTS + PH +G+AAL+ +A+P +P+ I+ AL +TA
Sbjct: 201 GTVDGDGD-GPPNF---FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTA------ 250
Query: 517 GKTLLDISTGQPSTPFDFGAGHVDPVAALD 546
LD+ G+P G+G VD A+
Sbjct: 251 ----LDM--GEPGYDNASGSGLVDADRAVA 274
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-10
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 308 DAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDS 367
V + C L + V GKIV+ RGG S VEK + AG G+I+ N D+
Sbjct: 9 PLVYVGNGDDAGGCCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGVIIYNNDT 68
Query: 368 YGEELVADA---QLLPSANVGEKAGDAI 392
G +P + + G+A+
Sbjct: 69 GGLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 31/151 (20%)
Query: 405 TIISRGTQLGIQPSPVVAAFSSRGPNPITPEI-LKPDLIAPGVNILAGWTGAVGPTGLES 463
T+ S ++ ++ FSS GP TP++ LKPD+ APG NI + T
Sbjct: 218 TVASANKKVPNPNGGQMSGFSSWGP---TPDLDLKPDITAPGGNIYS--TVNDN------ 266
Query: 464 DKRHVSFNIISGTSMSCPHVSGLAAL----LKAAHPEWSP----SAIKSALMTTAYSTNG 515
++ +SGTSM+ PHV+G +AL LK +P+ S +K+ LM TA
Sbjct: 267 -----TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATP--- 318
Query: 516 NGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546
L T +P GAG +D A+
Sbjct: 319 ---PLDSEDTKTYYSPRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 92 VIVGVLDTGVW---PEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDD---- 144
V V V+DTG+ P G P G K + VG + P DD
Sbjct: 15 VKVAVVDTGIDYTHP------ALGGCFGP-GCKVAGGYDFVGDDYDGTNPPVPDDDPMDC 67
Query: 145 DGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSD----ILA 200
GHGTH + A + + +GF G+A +A + Y+V GC GS I+A
Sbjct: 68 QGHGTHVAGIIAAN----PNAYGFT-----GVAPEATLGAYRV---FGCSGSTTEDTIIA 115
Query: 201 GMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGN---GGPYANSI 257
+A EDG +V++ S+GG + + D A+ A + G+ V+ +AGN GP+ S
Sbjct: 116 AFLRAYEDGADVITASLGGP-SGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASS 174
Query: 258 SNVAPWITTVGA 269
+ V +
Sbjct: 175 PASGRGVIAVAS 186
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 52/188 (27%), Positives = 67/188 (35%), Gaps = 56/188 (29%)
Query: 96 VLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTA 155
VLDTG+ F + +W + VG D +GHGTH + T
Sbjct: 31 VLDTGIRTTHVEFGG----------RAIWGADFVGGDP-------DSDCNGHGTHVAGTV 73
Query: 156 AGS---VVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGMDKAIED 208
G V A+L V KV C G S I+AG++ D
Sbjct: 74 GGKTYGVAKKANLVA--------------V---KVL---DCNGSGTLSGIIAGLEWVAND 113
Query: 209 GVN-----VMSMSIGGGLTDYYRDTVAIGAFTAM-AQGIFVSCSAGNGGPYANSISN-VA 261
V +MS+GGG T A A G+ V +AGN A + S A
Sbjct: 114 ATKRGKPAVANMSLGGG-----ASTALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASA 168
Query: 262 PWITTVGA 269
P TVGA
Sbjct: 169 PEAITVGA 176
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 3e-09
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 32/183 (17%)
Query: 137 ESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG- 195
++ +D +GHGTH + A + G+A +A + KV G G
Sbjct: 32 DNNDYQDGNGHGTHVAGIIAALDNGVGVV---------GVAPEADLYAVKVLNDDGS-GT 81
Query: 196 -SDILAGMDKAIEDGVNVMSMSIGGGLTD-YYRDTVAIGAFTAMAQGIFVSCSAGNGGPY 253
SDI+AG++ AIE+G+++++MS+GG R+ + A A GI V +AGN G
Sbjct: 82 YSDIIAGIEWAIENGMDIINMSLGGPSDSPALREAIK----KAYAAGILVVAAAGNSGN- 136
Query: 254 ANSISNVAP----WITTVGAGTLDRNFPTYVSLGNGKSFS--GVSLYSRRP------LSG 301
S P + VGA + N ++ S G + GV + S P LSG
Sbjct: 137 -GDSSYDYPAKYPSVIAVGAVDSNNNRASFSSTGPEVELAAPGVDILSTYPNNDYAYLSG 195
Query: 302 -SM 303
SM
Sbjct: 196 TSM 198
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 50/181 (27%), Positives = 70/181 (38%), Gaps = 42/181 (23%)
Query: 90 SEVIVGVLDTGV-----------W---PEIKS--FDDTGMGPV--PRGWKGVWYEEAVGP 131
+V+V V+DTGV W EI DD G G V GW
Sbjct: 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYVDDIYGW----------- 50
Query: 132 IDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLA 191
+ P DD+GHGTH + NG + G A + M + A
Sbjct: 51 -NFVNNDNDPMDDNGHGTHVAGIIGAVGNNGIGIAGVAWN-VKIMPLKFLGADGSG---- 104
Query: 192 GCFGSDILAGMDKAIEDGVNVMSMSIGG-GLTDYYRDTVAIGAFTAMAQGIFVSCSAGNG 250
SD + +D A++ G +++ S GG G + RD +A A+ GI +AGN
Sbjct: 105 --TTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDAGILFVAAAGND 158
Query: 251 G 251
G
Sbjct: 159 G 159
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 430 NPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAAL 489
+ D+ APGV+I++ G G S +SGTSM+ PHV+G+AAL
Sbjct: 204 AVANFSNGEVDIAAPGVDIVSAAPG----GGYRS---------MSGTSMATPHVAGVAAL 250
Query: 490 LKAAHPEWSPSAIKSALM--TTAYSTNGNGKTLLDISTGQ 527
A P+ A+ + L TA T L G
Sbjct: 251 WAEALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGV 290
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 21/123 (17%)
Query: 389 GDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPE-ILKPDLIAPGVN 447
G I + P ++S G + + A+FSS GP T + LKPD++A G
Sbjct: 158 GSTQWKGIGA-PADAENVLSVG---AVDANGNKASFSSIGP---TADGRLKPDVMALGTG 210
Query: 448 ILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALM 507
I + G + +GTS SCP ++GL A L AHP W+ IK A++
Sbjct: 211 IYV-----INGDG--------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAIL 257
Query: 508 TTA 510
+A
Sbjct: 258 KSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 31/202 (15%)
Query: 93 IVGVLDTGVWPEIKSF--DDTG----------MGPVPRGWKGVWYEEAVGP-----IDET 135
+V V+D+GV P +F DD G +Y E V P D
Sbjct: 14 VVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKV-PFAYNYADNN 72
Query: 136 AESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKV---CWLAG 192
+ D HG H + AG+ + G +G+A +A++ KV
Sbjct: 73 DDILDEDDGSSHGMHVAGIVAGNGDEEDNGEGI-----KGVAPEAQLLAMKVFSNPEGGS 127
Query: 193 CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFT-AMAQGIFVSCSAGN-- 249
+ ++ A++ G +V++MS+G D A A G+ V +AGN
Sbjct: 128 TYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDG 187
Query: 250 --GGPYANSISNVAPWITTVGA 269
G + ++ P TVG+
Sbjct: 188 NSGSGTSKPLATNNPDTGTVGS 209
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 50/209 (23%), Positives = 74/209 (35%), Gaps = 35/209 (16%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
++V +DTGV + + RGW G + D + P DD+GHGTHT
Sbjct: 4 IVVANIDTGV-----DWTHPALKNKYRGWGGGSADHDYNWFDPVGNTPLPYDDNGHGTHT 58
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAI----E 207
T G+ G G+A AR + G +D L +
Sbjct: 59 MGTMVGNDG---------DGQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDS 109
Query: 208 DGVNVM----------SMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSI 257
G S G ++ + VA A+ A GIF +AGN GP +++
Sbjct: 110 AGNPADPDLAPDVINNSWGGPSGDNEWLQPAVA--AWR--AAGIFPVFAAGNDGPRCSTL 165
Query: 258 SNVA---PWITTVGAGTLDRNFPTYVSLG 283
+ P VGA + + S G
Sbjct: 166 NAPPANYPESFAVGATDRNDVLADFSSRG 194
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 18/94 (19%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGP------TGLESDKRHVSFNIISG 475
A++S+ GP D+ APG + + G P T ++ + G
Sbjct: 204 ASYSNYGP--------AVDVSAPGGDCASDVNGDGYPDSNTGTTSPGGS----TYGFLQG 251
Query: 476 TSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
TSM+ PHV+G+AAL+K+ +P +P+ I+S L +T
Sbjct: 252 TSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.0 bits (126), Expect = 4e-07
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 417 PSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGT 476
S VA+FS+ G D+ APGVNIL + +SGT
Sbjct: 314 LSDTVASFSNDGSPT------GVDIAAPGVNIL------SLSAVNTLPGDGADYVTLSGT 361
Query: 477 SMSCPHVSGLAALLKAAHP-EWSPSAIKSALMTTAYSTNGNGKTLL----DISTGQPSTP 531
SM+ PHVSG+AAL+ +A+P E +P+ +++ ++TTA T +G L + +T
Sbjct: 362 SMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAATD 421
Query: 532 FDFGAGHVDPVAALDPGLVYDATVQDYLDFLCA 564
G + + + T+ L
Sbjct: 422 VAGGTLPANGTGSSQGAVEAPGTLALLTPALGG 454
|
Length = 508 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-07
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 323 TGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVA------DA 376
T A V GKIV+ RGG S EK + AG +I+ N +
Sbjct: 37 TTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTD 96
Query: 377 QLLPSANVGEKAGDAIKNYISSDP 400
+P+ + G+A+ + + +
Sbjct: 97 PSIPTVGISYADGEALLSLLEAGK 120
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 31/174 (17%)
Query: 91 EVIVGVLDTGVWP----EIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDG 146
+V V V+D+G+ P S VP+G G +EA ET + D G
Sbjct: 1 KVTVAVIDSGIDPDHPDLKNSISSYSKNLVPKG--GYDGKEA----GETGDINDIVDKLG 54
Query: 147 HGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVC-WLAGCFGSDILAGMDKA 205
HGT AG + A+G +G+A + +Y+V S I+ + A
Sbjct: 55 HGTAV----AGQIA--------ANGNIKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDA 102
Query: 206 IEDGVNVMSMSIGG---GLTDYYRDTVAIGAFT-----AMAQGIFVSCSAGNGG 251
+DGV+V+++S+GG +Y D V A+ A ++G V +AGN G
Sbjct: 103 ADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 44/149 (29%), Positives = 57/149 (38%), Gaps = 29/149 (19%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
V V VLDTG+ +F G + + G E V D GHGTH
Sbjct: 10 VRVAVLDTGIDLTHPAF--AGRDITTKSFVG---GEDVQ------------DGHGHGTHC 52
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSD--ILAGMDKAIEDG 209
+ T G V G G ARG A +A L G D ILAG+ A+ +G
Sbjct: 53 AGTIFGRDVPGPRY-----GVARG----AEIALIGKV-LGDGGGGDGGILAGIQWAVANG 102
Query: 210 VNVMSMSIGGGLTDYYRDTVAIGAFTAMA 238
+V+SMS+G G + A
Sbjct: 103 ADVISMSLGADFPGLVDQGWPPGLAFSRA 131
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A++S+ G DL+APGV I WT G G D + SGTS + P
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGI---WTTGTGR-GSAGDYPGGGYGSFSGTSFASP 214
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTT 509
+G+AAL+ +A+P +P+ ++ L +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 9e-06
Identities = 46/185 (24%), Positives = 64/185 (34%), Gaps = 37/185 (20%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
V VGV+D+G+ F + V D S D D HGTH
Sbjct: 5 VKVGVIDSGIDLSHPEFAG----------RVSEASYYVAVNDAGYAS--NGDGDSHGTHV 52
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSD--ILAGMDKAIEDG 209
+ A + G G+A A + + + AG SD I A D G
Sbjct: 53 AGVIAAARDGGG---------MHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASG 103
Query: 210 VNVMSMSIGGGLTDYY-------------RDTVAIGAFTAMAQGIFVSCSAGNGGPYANS 256
V +++ S GG +A A A A G+FV +AGN G S
Sbjct: 104 VRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVF-AAGNDGQANPS 162
Query: 257 ISNVA 261
++ A
Sbjct: 163 LAAAA 167
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 433 TPEILKPD--LIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALL 490
A GV+I+A T SG S + PHV+G+ ALL
Sbjct: 155 PKSFWYIYVEFSADGVDIIAPAPHGRYLTV-------------SGNSFAAPHVTGMVALL 201
Query: 491 KAAHPEWSPSAIKSALMTTA 510
+ P+ + +K L A
Sbjct: 202 LSEKPDIDANDLKRLLQRLA 221
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 331 VAGKIVVCDRGGNSRVEKGVEVKDAGGVGMIL-TNTDSYGEELVADAQLLPSANVGEKAG 389
V GKI + RG + VEK K AG VG+I+ N D + +A +P + ++ G
Sbjct: 46 VKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDG 105
Query: 390 DAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGP 429
+A+K + S ++ T+ +P +A FSSRGP
Sbjct: 106 EALKAALESS-----KKLTFNTKKEKATNPDLADFSSRGP 140
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 390 DAIKNYIS----SDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPG 445
D N+ + + P I+ G + +VA FS+ G + D+ APG
Sbjct: 186 DITPNFPNDYDKNGGEPANNFITVGASSKKYENNLVANFSNYGKKNV-------DVFAPG 238
Query: 446 VNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSA 505
I + + SGTSM+ P VSG+AAL+ + +P + +K
Sbjct: 239 ERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQI 285
Query: 506 LMTTA 510
++ +
Sbjct: 286 ILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 414 GIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVS---- 469
A +S GP P +KPD++A G N+ +G L S
Sbjct: 191 SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGG 248
Query: 470 -FNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALM 507
F + GTS + P + LAA L A PE SP I+ AL+
Sbjct: 249 GFVTVGGTSFAAPLAARLAAGLFAELPELSPETIR-ALL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
V ++SSRGP+ KPDL A G W + + +F++ GTSM+
Sbjct: 221 VVSWSSRGPSIAG--DPKPDLAAIGA---FAWAPGRVLDSGGALDGNEAFDLFGGTSMAT 275
Query: 481 PHVSGLAALL------KAAHPEWSPSAIKSALMTTA 510
P +G AAL+ K E+ P +++ LM+TA
Sbjct: 276 PMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 8e-05
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVN-ILAGWTGAVGPTGLESDKRHVSFNIISGTSMS 479
A+FS+ G D+ APGV IL+ G G ++ +SGTSM+
Sbjct: 198 KASFSNYG--------RWVDIAAPGVGTILSTVPKLDGDGG-------GNYEYLSGTSMA 242
Query: 480 CPHVSGLAALLKAAHP-EWSPSAIKSALMTT 509
PHVSG+AAL+ + P ++P I+ L +
Sbjct: 243 APHVSGVAALVLSKFPDVFTPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 13/167 (7%)
Query: 135 TAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCF 194
+ S + D DGHGTH + AG + +S +G+A +A++ + +G
Sbjct: 44 DSLSDTKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNL 98
Query: 195 GS--DILAGMDKAIEDGVNVMSMSIGGGLTDYYRD-TVAIGAFTAMAQGIFVSCSAGNGG 251
S D+ + G + S S G + + Y A F I SAGN G
Sbjct: 99 SSPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSAGNDG 158
Query: 252 PYANSISNVAPW---ITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYS 295
++ + TVGA + G G+S + ++ S
Sbjct: 159 NDGSNTIGSPATAKNVLTVGASN--NPSVSNGEGGLGQSDNSDTVAS 203
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.4 bits (101), Expect = 3e-04
Identities = 62/270 (22%), Positives = 99/270 (36%), Gaps = 43/270 (15%)
Query: 140 SPRDDDGHGTHTSTTAAGSVV-NGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDI 198
DD+GHGTH + T A + NGA + G A G A++ KV L GS
Sbjct: 178 PFLDDNGHGTHVAGTIAAVIFDNGAGVAGVAPG--------AKLLLVKV--LGSGGGSGE 227
Query: 199 LAGMDKAIEDGVN------VMSMSIGGGLTDYYRDTVAIGAFTAMAQG-IFVSCSAGNGG 251
L+ + + IE N V+++S+GG L+D + A G + + +AGN G
Sbjct: 228 LSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDG 287
Query: 252 PYANSISNVAPW------ITTVGAGTLDRNFPTYVSLGNGKSFS----GVSLYSRRPLSG 301
A+ P + VGA L ++ + G+ GV++ S ++
Sbjct: 288 SNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPTGVDIAAPGVNILSLSAVNT 347
Query: 302 SMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMI 361
D +S TS V+G + N +V++ I
Sbjct: 348 LPGDGADYVTLSGTSMAA---------PHVSGVAALV-LSANPNELTPAQVRNL-----I 392
Query: 362 LTNTDSYGEELVADAQLLPSANVGEKAGDA 391
+T V + AN+ A D
Sbjct: 393 VTTAGLTPLSGVDNLVGGGLANLDAAATDV 422
|
Length = 508 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 441 LIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPS 500
L APG NI + T G G + +SGTS + PHVSG AALL P +
Sbjct: 208 LAAPGENIYS--TDPDGGNG---------YGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 501 AIKSALMTTA 510
++ L+TTA
Sbjct: 257 QVRQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 38/152 (25%), Positives = 50/152 (32%), Gaps = 28/152 (18%)
Query: 172 TARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIED---GVNVMSMSIGGG---LTDYY 225
A +A A + Y G + L A+ D +V+S+S G L Y
Sbjct: 82 YAGAIAPGANITLYFA---PGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAY 138
Query: 226 RDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVA-----------PWITTVGAGTLDR 274
V A AQGI V ++G+ G P++T VG TL
Sbjct: 139 AQRVCNLFAQAAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198
Query: 275 NF------PTYVSLGNGKSFS--GVSLYSRRP 298
T S G S G S Y RP
Sbjct: 199 GGTGSSAESTVWSSEGGWGGSGGGFSNYFPRP 230
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 361 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 475 GTSMSCPHVSGLAAL----LKAAHPEWSPSAIKSALMTTAYS 512
GTSMS P+ G AL LKA ++P +++ AL TA
Sbjct: 370 GTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK 411
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 59/234 (25%), Positives = 90/234 (38%), Gaps = 31/234 (13%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
V+V ++DTGV G + GW + + + D DGHGT
Sbjct: 1 VVVAIIDTGVDLNHPDLS--GKPKLVPGW------------NFVSNNDPTSDIDGHGTAC 46
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCW-LAGCFGSDILAGMDKAIEDGV 210
+ AA NG G A G+A A++ ++ L + SDI + A ++G
Sbjct: 47 AGVAAAVGNNGL-------GVA-GVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGA 98
Query: 211 NVMSMSIGGGLTDYYRDTVAI-GAFTAM--AQGIFVSCSAGNGGPYANSISNVAPWITTV 267
+V+S S GG + AI A T +G V +AGN G +S P + V
Sbjct: 99 DVISNSWGGS-DSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAV 157
Query: 268 GAGTLDRNFPTYVSLGNGKSFS--GVSLYS--RRPLSGSMVPIVDAANVSSTSS 317
A + +Y + GN GV +++ S P + S TS
Sbjct: 158 AATDSNDARASYSNYGNYVDLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSF 211
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 9e-04
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 28/122 (22%)
Query: 399 DPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEI------LKPDLIAPGVNILAGW 452
+P +I G GI +A FSSRG T E+ +KPD++ G +
Sbjct: 147 NPADQMDVIGVG---GIDFDDNIARFSSRGMT--TWELPGGYGRVKPDIVTYGSGV---- 197
Query: 453 TGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPE----WSPSAIKSALMT 508
G+ G + +SGTS++ P V+G ALL + PE +P+++K AL+
Sbjct: 198 YGSKLKGGCRA---------LSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIE 248
Query: 509 TA 510
+A
Sbjct: 249 SA 250
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 46/197 (23%), Positives = 65/197 (32%), Gaps = 24/197 (12%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
+IV V+DTGV G G G+ P ++ GHGTH
Sbjct: 12 IIVAVVDTGVDGTHPDLQGNGDG---DGYDPAVNGYNFVPNVGDIDNDVS-VGGGHGTHV 67
Query: 152 STTAAGSVVNGASLFGFASGTARG-----MAAQARVATYKVCWLAGCFGSDILAGMDKAI 206
+ T A NG + G A M+ Q Y V + A + A
Sbjct: 68 AGTIAAVNNNGGGVGGIAGAGGVAPGVKIMSIQIFAGRYYV------GDDAVAAAIVYAA 121
Query: 207 EDGVNVMSMSIGGGLTDYYRDTV--AIGAF-----TAMAQGIFVSCSAGNGGPYANSISN 259
++G ++ S GG Y + A F + G V SAGN Y +
Sbjct: 122 DNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNS--YTDEHRF 179
Query: 260 VAPWITTVGAGTLDRNF 276
A + + LD N
Sbjct: 180 PAAYPGVIAVAALDTND 196
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 13/58 (22%)
Query: 441 LIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWS 498
L APG NI S S+ ++GTSM+ PHV+ +A+L+ + +P S
Sbjct: 534 LAAPGTNIY-------------STFPKNSYRKLNGTSMAAPHVAAIASLILSINPSLS 578
|
Length = 639 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 472 IISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
+ SGTS + P V+G+ AL+ A+P SP +S L TA
Sbjct: 244 VFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTA 282
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 701 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.91 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.74 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.74 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.41 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.3 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.67 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.66 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.61 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.6 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.58 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.58 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.56 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.5 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.44 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.41 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.37 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.31 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.29 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.28 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.26 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.26 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.25 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.18 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 97.95 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.79 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.24 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 96.55 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.15 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 95.95 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 95.91 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 95.68 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 95.18 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.66 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 94.62 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 94.42 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 93.84 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.87 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 89.01 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 88.66 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=429.13 Aligned_cols=281 Identities=58% Similarity=0.962 Sum_probs=236.3
Q ss_pred eccCCCCCCcccCCCCCCC--CCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccC-------Cc-
Q 005334 63 YELHTTRTPEFLGLGKSET--LFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVG-------PI- 132 (701)
Q Consensus 63 ~~~~~~~s~~~~gl~~~~~--~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~-------~~- 132 (701)
++++++++++|+|+..... +|..+.+|+||+|||||||||++||+|.+....+.+..|.+.|...... ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4788999999999987655 4778999999999999999999999999988888888888777322110 00
Q ss_pred ---------------cCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecC-CCCChH
Q 005334 133 ---------------DETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWL-AGCFGS 196 (701)
Q Consensus 133 ---------------~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~-~g~~~~ 196 (701)
+......++.|..||||||||||||+...+....|...+.+.|+||+|+|+.+|+++. ..+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 1122345678899999999999999987776666776777899999999999999988 448889
Q ss_pred HHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCcee
Q 005334 197 DILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNF 276 (701)
Q Consensus 197 ~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~ 276 (701)
++++||++|++++++|||||||......+.+.+..+++.+.++|++||+||||+|+...+.++..||+++|||++
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~----- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST----- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-----
Confidence 999999999999999999999987655667888888889999999999999999988888888999999999820
Q ss_pred eeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcC
Q 005334 277 PTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAG 356 (701)
Q Consensus 277 ~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~G 356 (701)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCC
Q 005334 357 GVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEI 436 (701)
Q Consensus 357 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~ 436 (701)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 437 LKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 437 lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
+||||+|||++|++++..... .........|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus 236 ~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 478999999999999875311 111223357999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-49 Score=406.76 Aligned_cols=270 Identities=23% Similarity=0.242 Sum_probs=203.8
Q ss_pred CCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcc
Q 005334 86 SEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASL 165 (701)
Q Consensus 86 ~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~ 165 (701)
+++|+||+|||||||||..||+|.+...+..+..+.. ........|..+|||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~d~~gHGT~vAgii---------- 58 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVNV------------LGDLDGGSGGGDEGRAMLEII---------- 58 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcceee------------ccccCCCCCCCchHHHHHHHH----------
Confidence 5789999999999999999886544332222222211 111234568889999999999
Q ss_pred cccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCCCCCCc-cCHHHHHHHHHHHC-CCEE
Q 005334 166 FGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYY-RDTVAIGAFTAMAQ-GIFV 243 (701)
Q Consensus 166 ~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~-~d~i~~a~~~a~~~-Gi~v 243 (701)
.||||+|+|+.+|+. ...+++++||+||++.|++|||||||....+.+ ...+..++.++.++ |++|
T Consensus 59 --------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~Gvlv 126 (275)
T cd05562 59 --------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLY 126 (275)
T ss_pred --------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHHHHHcCCcEE
Confidence 489999999999874 457899999999999999999999998654433 34677778888887 9999
Q ss_pred EEecCCCCCCCC-ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccC
Q 005334 244 SCSAGNGGPYAN-SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCM 322 (701)
Q Consensus 244 V~AAGN~G~~~~-~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~ 322 (701)
|+||||+|+... ..+...|++|+|||.+.+....... |.
T Consensus 127 VaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s----------------------------------------~~ 166 (275)
T cd05562 127 FSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS----------------------------------------DP 166 (275)
T ss_pred EEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc----------------------------------------cc
Confidence 999999998543 3466889999999964332210000 00
Q ss_pred CCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCC
Q 005334 323 TGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGP 402 (701)
Q Consensus 323 ~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 402 (701)
..
T Consensus 167 ----~~-------------------------------------------------------------------------- 168 (275)
T cd05562 167 ----AP-------------------------------------------------------------------------- 168 (275)
T ss_pred ----cc--------------------------------------------------------------------------
Confidence 00
Q ss_pred eEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCC-cEEecccCCCCCCCCCCCcccceeEeeccccchhh
Q 005334 403 MATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGV-NILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481 (701)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 481 (701)
.......+.|++|||+. ++++||||+|||. ++.+.+.. ..|..++|||||||
T Consensus 169 ------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~~~~~~sGTS~AaP 221 (275)
T cd05562 169 ------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------DGPPNFFGTSAAAP 221 (275)
T ss_pred ------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------CceeecccchHHHH
Confidence 00011345678899987 5789999999975 44444433 27899999999999
Q ss_pred hHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 482 HVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 482 ~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+|++
T Consensus 222 ~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 222 HAAGVAALVLSANPGLTPADIRDALRSTALDMGE------------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC------------CCCCCCcCcCcccHHHHhh
Confidence 9999999999999999999999999999998742 2234589999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-49 Score=434.10 Aligned_cols=293 Identities=20% Similarity=0.202 Sum_probs=211.4
Q ss_pred cccCCCC--CCCCCC--CCCCCCCCEEEEEccCCCCCCCCccCCCCCCCC--Cccceee-----E-ecccCCccCCCCCC
Q 005334 72 EFLGLGK--SETLFP--TSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVP--RGWKGVW-----Y-EEAVGPIDETAESK 139 (701)
Q Consensus 72 ~~~gl~~--~~~~~~--~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~--~~~~g~~-----~-~~~~~~~~~~~~~~ 139 (701)
..|+++. +..+|+ .+.+|+||+|||||||||++||+|.+....... ...++.. + +...+ ++......
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDdD~nG~vdd~~G-~nfVd~~~ 372 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDDDNNGNVDDEYG-ANFVNNDG 372 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccccccCCccccccc-ccccCCCC
Confidence 3466654 344665 356899999999999999999999875311100 0001110 0 00111 23333445
Q ss_pred CCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEecc
Q 005334 140 SPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIG 218 (701)
Q Consensus 140 ~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG 218 (701)
+|.|..||||||||||||...++ ..+.||||+|+|+++|+++..| +..+++++||+||++.|++|||||||
T Consensus 373 ~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG 444 (639)
T PTZ00262 373 GPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFS 444 (639)
T ss_pred CCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccc
Confidence 67899999999999999975332 1248999999999999998776 78899999999999999999999999
Q ss_pred CCCCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCc--------------ccc----CCCceEEecCCccCceeeeEE
Q 005334 219 GGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANS--------------ISN----VAPWITTVGAGTLDRNFPTYV 280 (701)
Q Consensus 219 ~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~ap~vitVgAst~~~~~~~~~ 280 (701)
+.. +...+..++.+|.++|++||+||||+|+.... ++. ..|++|+|||...+..
T Consensus 445 ~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~----- 516 (639)
T PTZ00262 445 FDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKN----- 516 (639)
T ss_pred cCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCC-----
Confidence 742 34567778889999999999999999864321 111 1345555555321100
Q ss_pred EcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEE
Q 005334 281 SLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGM 360 (701)
Q Consensus 281 ~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~ 360 (701)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCc
Q 005334 361 ILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPD 440 (701)
Q Consensus 361 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPD 440 (701)
..-..+.||++|.. ++|
T Consensus 517 --------------------------------------------------------~~~s~s~~Snyg~~-------~VD 533 (639)
T PTZ00262 517 --------------------------------------------------------NQYSLSPNSFYSAK-------YCQ 533 (639)
T ss_pred --------------------------------------------------------CcccccccccCCCC-------cce
Confidence 00023345565522 359
Q ss_pred EEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccc
Q 005334 441 LIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTL 520 (701)
Q Consensus 441 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~ 520 (701)
|+|||++|+++++.+ .|..++|||||||||||+||||++++|+|++.+|+++|++||.++....
T Consensus 534 IaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~~--- 597 (639)
T PTZ00262 534 LAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLK--- 597 (639)
T ss_pred EEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCCC---
Confidence 999999999998764 7999999999999999999999999999999999999999998764211
Q ss_pred ccCCCCCCCCCCCCC-ccccCccccCCCCccc
Q 005334 521 LDISTGQPSTPFDFG-AGHVDPVAALDPGLVY 551 (701)
Q Consensus 521 ~~~~~~~~~~~~~~G-~G~vn~~~A~~~glv~ 551 (701)
. .+| .|+||+.+|++..+-+
T Consensus 598 ---------n--~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 598 ---------N--KVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred ---------C--ccccCcEEcHHHHHHHHHhc
Confidence 1 233 3899999999976644
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=400.05 Aligned_cols=243 Identities=26% Similarity=0.355 Sum_probs=197.4
Q ss_pred CCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCC
Q 005334 83 FPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNG 162 (701)
Q Consensus 83 ~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~ 162 (701)
|+++++|+||+|||||||||.+||+|.+.... ..| .......|..||||||||||+|+..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~~~---~~~---------------~~~~~~~d~~gHGT~VAGiIa~~~~-- 60 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVKER---TNW---------------TNEKTLDDGLGHGTFVAGVIASSRE-- 60 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccccc---ccc---------------CCCCCCCCCCCcHHHHHHHHHccCC--
Confidence 88999999999999999999999999853110 011 1112456788999999999999742
Q ss_pred CcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCC
Q 005334 163 ASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGI 241 (701)
Q Consensus 163 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi 241 (701)
.+.||||+|+|+.+|++.+.+ +..+.++++|++|+++++||||||||... +....+..++.++.++|+
T Consensus 61 ---------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~~~~~~~~~~~~~~~~gi 129 (255)
T cd07479 61 ---------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--FMDKPFVDKVWELTANNI 129 (255)
T ss_pred ---------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC--CCCcHHHHHHHHHHHCCc
Confidence 248999999999999998776 56778999999999999999999999753 234556667778889999
Q ss_pred EEEEecCCCCCCCCc--cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCC
Q 005334 242 FVSCSAGNGGPYANS--ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGN 319 (701)
Q Consensus 242 ~vV~AAGN~G~~~~~--~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~ 319 (701)
+||+||||+|+...+ .+...+++|+|||..
T Consensus 130 ~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~------------------------------------------------ 161 (255)
T cd07479 130 IMVSAIGNDGPLYGTLNNPADQMDVIGVGGID------------------------------------------------ 161 (255)
T ss_pred EEEEEcCCCCCCcccccCcccCCCceEEeeec------------------------------------------------
Confidence 999999999976443 345678888888731
Q ss_pred ccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcC
Q 005334 320 LCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSD 399 (701)
Q Consensus 320 ~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 399 (701)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEecceeecccCCCceecccCCCCCCC----CCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecc
Q 005334 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPI----TPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISG 475 (701)
Q Consensus 400 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 475 (701)
..+.++.|||+|++.. ..+++||||.|||.+|+++.... .|..++|
T Consensus 162 -----------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~-------------~~~~~sG 211 (255)
T cd07479 162 -----------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKG-------------GCRALSG 211 (255)
T ss_pred -----------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCC-------------CeEEecc
Confidence 1226688999996531 25788999999999999876543 6889999
Q ss_pred ccchhhhHhHHHHHHHhhCC----CCCHHHHHHHHHhccccCC
Q 005334 476 TSMSCPHVSGLAALLKAAHP----EWSPSAIKSALMTTAYSTN 514 (701)
Q Consensus 476 TSmAaP~VAG~aALl~~~~P----~~sp~~Ik~~L~~TA~~~~ 514 (701)
||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 212 TS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 212 TSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 99999999999999999999 7999999999999999864
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=406.40 Aligned_cols=283 Identities=28% Similarity=0.288 Sum_probs=189.4
Q ss_pred CCCCEEEEEccCCCCCCCCccCCCCCCCCCccceee-Ee-cccCCccCC-CCCCCCCCCCCChhHHHHhhcccccCCCcc
Q 005334 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVW-YE-EAVGPIDET-AESKSPRDDDGHGTHTSTTAAGSVVNGASL 165 (701)
Q Consensus 89 G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~-~~-~~~~~~~~~-~~~~~~~D~~gHGThvAgiaAG~~~~~~~~ 165 (701)
|+||+|+|||||||.+||+|.++... .|...+ +. ......+.. .....+.|.+||||||||||||+.....+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~~~~~~~ 76 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFDYKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRGKMEYNL 76 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccCcCCCccCCcCCCCCccCCCCCccccchhHHHHHhccCcccccc
Confidence 89999999999999999999754211 111000 00 000001111 111346899999999999999986433322
Q ss_pred cccC-CCceeeecCCCeEEEEEeecCCC-CChHHHHH-------HHHHH--HHcCCeEEEEeccCCCCCCc-----cCHH
Q 005334 166 FGFA-SGTARGMAAQARVATYKVCWLAG-CFGSDILA-------GMDKA--IEDGVNVMSMSIGGGLTDYY-----RDTV 229 (701)
Q Consensus 166 ~G~~-~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a--i~~gvdVInlSlG~~~~~~~-----~d~i 229 (701)
+++. ...+.||||+|+|+.+|++...+ +....+.. +++|+ .+++++|||||||.....+. .+..
T Consensus 77 ~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~ 156 (311)
T cd07497 77 YGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDIS 156 (311)
T ss_pred cccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccccccCcCHH
Confidence 2211 23468999999999999996543 32333333 34443 36799999999998542211 1222
Q ss_pred HHHHHH-HHHCCCEEEEecCCCCCCCCc--cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeE
Q 005334 230 AIGAFT-AMAQGIFVSCSAGNGGPYANS--ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPI 306 (701)
Q Consensus 230 ~~a~~~-a~~~Gi~vV~AAGN~G~~~~~--~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l 306 (701)
+..... +.++|+++|+||||+|+...+ .+..++++|+|||++.....+. +..
T Consensus 157 ~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~-------------------------~~~ 211 (311)
T cd07497 157 SLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF-------------------------YLF 211 (311)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch-------------------------hhh
Confidence 222222 238999999999999986443 4557899999999643211000 000
Q ss_pred EEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEech
Q 005334 307 VDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGE 386 (701)
Q Consensus 307 ~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~ 386 (701)
.+
T Consensus 212 ~~------------------------------------------------------------------------------ 213 (311)
T cd07497 212 GY------------------------------------------------------------------------------ 213 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred hhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcc
Q 005334 387 KAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKR 466 (701)
Q Consensus 387 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 466 (701)
.....+.++.||||||+. ++++||||+|||++|+++.+...... ....
T Consensus 214 ---------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~---~~~~ 261 (311)
T cd07497 214 ---------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG---ALDG 261 (311)
T ss_pred ---------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc---ccCC
Confidence 001234789999999998 59999999999999999876542200 0111
Q ss_pred cceeEeeccccchhhhHhHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 005334 467 HVSFNIISGTSMSCPHVSGLAALLKAAHP------EWSPSAIKSALMTTA 510 (701)
Q Consensus 467 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~~sp~~Ik~~L~~TA 510 (701)
...|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 262 ~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 262 NEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 24699999999999999999999999986 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=411.90 Aligned_cols=402 Identities=23% Similarity=0.244 Sum_probs=227.8
Q ss_pred CCCCCCEEEEEccCCCCCCCCccCC-CCCCCCCccceeeEeccc------C----------C--ccCCCCCCCCCCCCCC
Q 005334 87 EVQSEVIVGVLDTGVWPEIKSFDDT-GMGPVPRGWKGVWYEEAV------G----------P--IDETAESKSPRDDDGH 147 (701)
Q Consensus 87 ~~G~gVvVgVIDtGId~~Hp~f~~~-~~~~~~~~~~g~~~~~~~------~----------~--~~~~~~~~~~~D~~gH 147 (701)
.+|+||+|||||||||+.||+|.+. +..++...|+........ + . .....+.....|..||
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~GH 80 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGH 80 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCccccCceEEeHHHHHHHHhcCCccccCcCCCCCCc
Confidence 3799999999999999999999954 445566667654411100 0 0 0011112235689999
Q ss_pred hhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC-----------CChHHHHHHHHHHHHc-----CCe
Q 005334 148 GTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-----------CFGSDILAGMDKAIED-----GVN 211 (701)
Q Consensus 148 GThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~ai~~-----gvd 211 (701)
||||||||||+..++ ..+.||||+|+|+++|++...+ +..++++.||+|+++. .+.
T Consensus 81 GThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~ 152 (455)
T cd07478 81 GTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPL 152 (455)
T ss_pred hHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCe
Confidence 999999999996442 2348999999999999998765 5678999999999874 478
Q ss_pred EEEEeccCCCC-CCccCHHHHHHHHHHHC-CCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEE
Q 005334 212 VMSMSIGGGLT-DYYRDTVAIGAFTAMAQ-GIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFS 289 (701)
Q Consensus 212 VInlSlG~~~~-~~~~d~i~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~ 289 (701)
|||||||.... ....+.++.++..+.++ |++||+||||+|....+.... +... ...-...+..+.++.-.
T Consensus 153 VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~----~~~~----~~~~~ie~~v~~~~~~~ 224 (455)
T cd07478 153 VINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGG----IVPN----GETKTVELNVGEGEKGF 224 (455)
T ss_pred EEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeee----eccC----CceEEEEEEECCCCcce
Confidence 99999998653 34456777777777765 999999999999754443321 0000 00011122222222111
Q ss_pred EEEeecCCCCCCceeeEEEcCCCCCCcCC-CccCCCCCCCCCccceEEEEecCCCchh--hhhHHHhHcCceEEEEeecC
Q 005334 290 GVSLYSRRPLSGSMVPIVDAANVSSTSSG-NLCMTGSLIPAKVAGKIVVCDRGGNSRV--EKGVEVKDAGGVGMILTNTD 366 (701)
Q Consensus 290 g~s~~~~~~~~~~~~~l~~~~~~~~~~~~-~~C~~~~~~~~~~~gkiv~~~~g~~~~~--~~~~~~~~~Ga~g~i~~n~~ 366 (701)
...++.... ..-.+.++.........-. ..-....+.......++.+..+...... +........-..|++...-.
T Consensus 225 ~~eiW~~~~-d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~~~GiW~i~~~ 303 (455)
T cd07478 225 NLEIWGDFP-DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKPGIWKIRLT 303 (455)
T ss_pred EEEEecCCC-CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccCCCccceEEEEE
Confidence 111111110 0001111111110000000 0000000000000111111111000000 00000000111122211111
Q ss_pred CCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceee------c-ccCCCceecccCCCCCCCCCCCCCC
Q 005334 367 SYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQL------G-IQPSPVVAAFSSRGPNPITPEILKP 439 (701)
Q Consensus 367 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~------~-~~~~~~~a~fSS~GP~~~~~~~lKP 439 (701)
...........++|.-.+...+.. ++.. ++..+++...+.. . ......++.||||||+. ++++||
T Consensus 304 ~~~~~~g~~~~Wlp~~~~~~~~t~----f~~~--~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~--~~~~kp 375 (455)
T cd07478 304 GVSITDGRFDAWLPSRGLLSENTR----FLEP--DPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR--DGRIKP 375 (455)
T ss_pred eccCCCceEEEEecCcCcCCCCCE----eecC--CCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--CCCcCc
Confidence 100001112234443333322211 1111 2333444333211 1 12234699999999998 699999
Q ss_pred cEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhC------CCCCHHHHHHHHHhccccC
Q 005334 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAH------PEWSPSAIKSALMTTAYST 513 (701)
Q Consensus 440 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~~sp~~Ik~~L~~TA~~~ 513 (701)
||+|||++|+++++.+ .|..++|||||||||||++|||+|++ |.|++++||++|++||+++
T Consensus 376 di~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~ 442 (455)
T cd07478 376 DIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRR 442 (455)
T ss_pred eEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccC
Confidence 9999999999998864 79999999999999999999999975 5679999999999999987
Q ss_pred CCCCcccccCCCCCCCCCCCCCcc
Q 005334 514 NGNGKTLLDISTGQPSTPFDFGAG 537 (701)
Q Consensus 514 ~~~g~~~~~~~~~~~~~~~~~G~G 537 (701)
. ...+++.+||||
T Consensus 443 ~-----------~~~~pn~~~GyG 455 (455)
T cd07478 443 P-----------GDEYPNPEWGYG 455 (455)
T ss_pred C-----------CCCCCCCCCCCC
Confidence 4 234567799998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=396.22 Aligned_cols=292 Identities=30% Similarity=0.371 Sum_probs=225.2
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCC--CCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGP--VPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAG 157 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG 157 (701)
+.+|+.+++|+||+|||||+|||++||+|.+...+. ....|+-. .+... ..+...+...+.|..||||||||||+|
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~~~~~~~~~d~~-~~~~~-~~~~~~~~~~~~d~~gHGT~vAgiia~ 80 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYDFV-GDDYD-GTNPPVPDDDPMDCQGHGTHVAGIIAA 80 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCCCceeccccccC-Ccccc-cccCCCCCCCCCCCCCcHHHHHHHHhc
Confidence 468999999999999999999999999998753221 01111100 00000 011123334567889999999999999
Q ss_pred cccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334 158 SVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTA 236 (701)
Q Consensus 158 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a 236 (701)
...+ .| +.|+||+|+|+.+|++...+ .....++++|++|++++++|||+|||.... +..+.+...+.++
T Consensus 81 ~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~~-~~~~~~~~~~~~~ 150 (312)
T cd07489 81 NPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPSG-WSEDPWAVVASRI 150 (312)
T ss_pred CCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCCC-CCCCHHHHHHHHH
Confidence 8643 12 48999999999999998665 667778999999999999999999998542 2346677777888
Q ss_pred HHCCCEEEEecCCCCCCCC---ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCC
Q 005334 237 MAQGIFVSCSAGNGGPYAN---SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVS 313 (701)
Q Consensus 237 ~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~ 313 (701)
.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 151 ~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------------------------------ 188 (312)
T cd07489 151 VDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------------------------------ 188 (312)
T ss_pred HHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec------------------------------------------
Confidence 9999999999999986532 2345667788887620
Q ss_pred CCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 005334 314 STSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIK 393 (701)
Q Consensus 314 ~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 393 (701)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEee
Q 005334 394 NYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNII 473 (701)
Q Consensus 394 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 473 (701)
+.||++||+. +...||||+|||++++++++... ..|..+
T Consensus 189 ----------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-----------~~~~~~ 227 (312)
T cd07489 189 ----------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-----------GGYAVL 227 (312)
T ss_pred ----------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC-----------CceEee
Confidence 4588999988 47899999999999999887642 158999
Q ss_pred ccccchhhhHhHHHHHHHhhC-CCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCCCCc
Q 005334 474 SGTSMSCPHVSGLAALLKAAH-PEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGL 549 (701)
Q Consensus 474 sGTSmAaP~VAG~aALl~~~~-P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~gl 549 (701)
+|||||||+|||++|||+|++ |.+++.+||++|++||..+...+.... ....++...+|+|+||+.+|++..-
T Consensus 228 ~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~---~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 228 SGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA---LPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc---ccCCCCHhhcCcceeeHHHHhcCCc
Confidence 999999999999999999999 999999999999999998764432111 1123566799999999999999543
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=401.56 Aligned_cols=300 Identities=26% Similarity=0.334 Sum_probs=218.9
Q ss_pred CCCCCC-CCCCCEEEEEccCCCCCCCCccCCCCCCCCC-----ccceeeEec---c-cCC----ccCCCCCCC---CCCC
Q 005334 82 LFPTSE-VQSEVIVGVLDTGVWPEIKSFDDTGMGPVPR-----GWKGVWYEE---A-VGP----IDETAESKS---PRDD 144 (701)
Q Consensus 82 ~~~~~~-~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~-----~~~g~~~~~---~-~~~----~~~~~~~~~---~~D~ 144 (701)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+... . ..+ ++..+.... ..|.
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDDG 81 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCCC
Confidence 688877 9999999999999999999998764332100 000000000 0 000 111111111 3478
Q ss_pred CCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecC--C-CCChHHHHHHHHHHHHcCCeEEEEeccCCC
Q 005334 145 DGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWL--A-GCFGSDILAGMDKAIEDGVNVMSMSIGGGL 221 (701)
Q Consensus 145 ~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~-g~~~~~i~~ai~~ai~~gvdVInlSlG~~~ 221 (701)
.+|||||||||+|....... ...+.|+||+|+|+.+|+++. . .+....+++|++++++.|++|||||||...
T Consensus 82 ~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~ 156 (346)
T cd07475 82 SSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTA 156 (346)
T ss_pred CCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 89999999999998644211 223599999999999999973 3 377888999999999999999999999865
Q ss_pred CC-CccCHHHHHHHHHHHCCCEEEEecCCCCCCCCccc----------------cCCCceEEecCCccCceeeeEEEcCC
Q 005334 222 TD-YYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSIS----------------NVAPWITTVGAGTLDRNFPTYVSLGN 284 (701)
Q Consensus 222 ~~-~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------------~~ap~vitVgAst~~~~~~~~~~l~~ 284 (701)
.. .....+..++.++.++|++||+||||+|....... ...+++|+||+...
T Consensus 157 ~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~------------ 224 (346)
T cd07475 157 GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK------------ 224 (346)
T ss_pred CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccc------------
Confidence 32 44566777888899999999999999986543211 12334444444210
Q ss_pred CcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEee
Q 005334 285 GKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTN 364 (701)
Q Consensus 285 g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 364 (701)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEec
Q 005334 365 TDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAP 444 (701)
Q Consensus 365 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~AP 444 (701)
.........++.||+|||+. ..++||||+||
T Consensus 225 -----------------------------------------------~~~~~~~~~~~~~S~~G~~~--~~~~~pdi~ap 255 (346)
T cd07475 225 -----------------------------------------------KVPNPNGGQMSGFSSWGPTP--DLDLKPDITAP 255 (346)
T ss_pred -----------------------------------------------ccCCCCCCccCCCcCCCCCc--ccCcCCeEEeC
Confidence 00012334788999999998 58999999999
Q ss_pred CCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhh----CCCCCHHH----HHHHHHhccccCCCC
Q 005334 445 GVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAA----HPEWSPSA----IKSALMTTAYSTNGN 516 (701)
Q Consensus 445 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~sp~~----Ik~~L~~TA~~~~~~ 516 (701)
|.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+...
T Consensus 256 G~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~- 321 (346)
T cd07475 256 GGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLD- 321 (346)
T ss_pred CCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccc-
Confidence 99999987653 7889999999999999999999998 79999877 78899999995321
Q ss_pred CcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 517 GKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 517 g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
.......+.+..+|+|+||+.+|++
T Consensus 322 -----~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 322 -----SEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred -----cCCCCccCCccccCcchhcHHHhhC
Confidence 1112556778899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=385.20 Aligned_cols=246 Identities=24% Similarity=0.302 Sum_probs=203.3
Q ss_pred CCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccC
Q 005334 82 LFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVN 161 (701)
Q Consensus 82 ~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~ 161 (701)
+|..+++|+||+|||||+|||++||+|.+..+.+....| .......|..+|||||||||+|+...
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~---------------~~~~~~~~~~gHGT~VAgii~g~~~~ 66 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYA---------------AAACQDGGASAHGTHVASLIFGQPCS 66 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCcc---------------ccCCCCCCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999999999999876433211111 01224567889999999999987421
Q ss_pred CCcccccCCCceeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHHcCCeEEEEeccCCCC-CCccCHHHHHHHHHHH
Q 005334 162 GASLFGFASGTARGMAAQARVATYKVCWLAG--CFGSDILAGMDKAIEDGVNVMSMSIGGGLT-DYYRDTVAIGAFTAMA 238 (701)
Q Consensus 162 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~ai~~gvdVInlSlG~~~~-~~~~d~i~~a~~~a~~ 238 (701)
.+.||||+|+|+.+|++...+ +...++++||++|+++|+||||||||.... ......+..++.+|.+
T Consensus 67 ----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~ 136 (267)
T cd07476 67 ----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAMCQQ 136 (267)
T ss_pred ----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHHHHHHHHHHH
Confidence 248999999999999997654 457789999999999999999999997542 3345667888888999
Q ss_pred CCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCC
Q 005334 239 QGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSG 318 (701)
Q Consensus 239 ~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (701)
+|++||+||||+|.....++...|++|+|||...
T Consensus 137 ~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------------------------------- 170 (267)
T cd07476 137 NNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD---------------------------------------------- 170 (267)
T ss_pred CCCEEEEecCCCCCCCCCCcccCCceEEEEeecC----------------------------------------------
Confidence 9999999999999877777888899999998321
Q ss_pred CccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhc
Q 005334 319 NLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISS 398 (701)
Q Consensus 319 ~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 398 (701)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccc
Q 005334 399 DPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSM 478 (701)
Q Consensus 399 ~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 478 (701)
.+.++.||++|+.. .||||+|||.+|+++.+.+ .|..++||||
T Consensus 171 -------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~-------------~~~~~sGTS~ 213 (267)
T cd07476 171 -------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALGG-------------EVVRRSGTSF 213 (267)
T ss_pred -------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCCC-------------CeEEeccHHH
Confidence 11456789999764 3889999999999987764 6899999999
Q ss_pred hhhhHhHHHHHHHhhCCC----CCHHHHHHHHHhccccCCC
Q 005334 479 SCPHVSGLAALLKAAHPE----WSPSAIKSALMTTAYSTNG 515 (701)
Q Consensus 479 AaP~VAG~aALl~~~~P~----~sp~~Ik~~L~~TA~~~~~ 515 (701)
|||||||++|||++++|. ++|++||++|++||+++..
T Consensus 214 AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 214 AAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred HHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 999999999999999887 9999999999999999864
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=382.85 Aligned_cols=283 Identities=37% Similarity=0.553 Sum_probs=211.9
Q ss_pred CCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCC--------CCCCCCCCCCChhHHHHhhccccc
Q 005334 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETA--------ESKSPRDDDGHGTHTSTTAAGSVV 160 (701)
Q Consensus 89 G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~D~~gHGThvAgiaAG~~~ 160 (701)
|+||+|||||+||+++||+|.+..... .++.. .++.......... ......|..+|||||||+|+|...
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~ 77 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFPN--DKVKG-GYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGV 77 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCCC--Cceee-eeECccCCCCcccccccccccccCCCCCCCCcHHHHHHHHhcCCC
Confidence 899999999999999999998542110 11111 1211111000000 111245688999999999998854
Q ss_pred CCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHC
Q 005334 161 NGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQ 239 (701)
Q Consensus 161 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~ 239 (701)
+ ...+.|+||+|+|+.+|++...+ +...+++++|+++++++++|||||||..... ..+.+..++.++.++
T Consensus 78 n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-~~~~~~~~~~~~~~~ 148 (295)
T cd07474 78 N--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-PDDPDAIAINNAVKA 148 (295)
T ss_pred c--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-CCCHHHHHHHHHHhc
Confidence 3 22348999999999999997544 7888999999999999999999999975432 356777788899999
Q ss_pred CCEEEEecCCCCCCCCcc--ccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcC
Q 005334 240 GIFVSCSAGNGGPYANSI--SNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSS 317 (701)
Q Consensus 240 Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (701)
|+++|+||||+|...... +...+++|+|||+....
T Consensus 149 gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~------------------------------------------- 185 (295)
T cd07474 149 GVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD------------------------------------------- 185 (295)
T ss_pred CCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-------------------------------------------
Confidence 999999999998765543 45788999999853100
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHh
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEecceeecccCCCceecccCCC-CCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccc
Q 005334 398 SDPGPMATIISRGTQLGIQPSPVVAAFSSRG-PNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGT 476 (701)
Q Consensus 398 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G-P~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 476 (701)
.........|+++| +.. ...+||||+|||++|++++.... ..|..++||
T Consensus 186 -----------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~-----------~~~~~~~GT 235 (295)
T cd07474 186 -----------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG-----------TGYARMSGT 235 (295)
T ss_pred -----------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC-----------CceEEeccH
Confidence 00111334445544 444 58899999999999999987631 268999999
Q ss_pred cchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCcccc
Q 005334 477 SMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAA 544 (701)
Q Consensus 477 SmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A 544 (701)
|||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..+|+|+||+.+|
T Consensus 236 S~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 236 SMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCcceeccccC
Confidence 999999999999999999999999999999999998864331 222445999999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=371.96 Aligned_cols=234 Identities=26% Similarity=0.353 Sum_probs=189.9
Q ss_pred CEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCC
Q 005334 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASG 171 (701)
Q Consensus 92 VvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g 171 (701)
|+|||||||||.+||+|.++.+. .| . .......|..+|||||||||+|+....
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~----~~------------~--~~~~~~~~~~~HGT~vAgiia~~~~~~--------- 53 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA----RL------------F--FAGPGAPAPSAHGTAVASLLAGAGAQR--------- 53 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc----cc------------c--CCCCCCCCCCCCHHHHHHHHhCCCCCC---------
Confidence 78999999999999999765322 00 0 001135678899999999999985321
Q ss_pred ceeeecCCCeEEEEEeecCCC----CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEEEec
Q 005334 172 TARGMAAQARVATYKVCWLAG----CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSA 247 (701)
Q Consensus 172 ~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AA 247 (701)
.|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||... ...+..++.++.++|++||+||
T Consensus 54 --~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~----~~~l~~ai~~a~~~gilvv~Aa 127 (239)
T cd05561 54 --PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP----NALLAAAVAAAAARGMVLVAAA 127 (239)
T ss_pred --cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEec
Confidence 6999999999999998642 67788999999999999999999999743 3456777778999999999999
Q ss_pred CCCCCCC-CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCC
Q 005334 248 GNGGPYA-NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSL 326 (701)
Q Consensus 248 GN~G~~~-~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~ 326 (701)
||+|+.. ..++...|++|+|++..
T Consensus 128 GN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------------------------------- 152 (239)
T cd05561 128 GNDGPAAPPLYPAAYPGVIAVTAVD------------------------------------------------------- 152 (239)
T ss_pred CCCCCCCCccCcccCCCceEEEeec-------------------------------------------------------
Confidence 9999753 35666778888888731
Q ss_pred CCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEE
Q 005334 327 IPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATI 406 (701)
Q Consensus 327 ~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 406 (701)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHH
Q 005334 407 ISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGL 486 (701)
Q Consensus 407 ~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 486 (701)
..+.++.||++|+.. ||.|||++|+++.+.+ .|..++|||||||||||+
T Consensus 153 ----------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~ 201 (239)
T cd05561 153 ----------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPGG-------------GYRYVSGTSFAAPFVTAA 201 (239)
T ss_pred ----------CCCCccccCCCCCcc--------eEEccccceecccCCC-------------CEEEeCCHHHHHHHHHHH
Confidence 112556789999876 9999999999976553 789999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCcc
Q 005334 487 AALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAG 537 (701)
Q Consensus 487 aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 537 (701)
+|||+|++| +++++||++|++||+++... .....||||
T Consensus 202 aAll~~~~p-~~~~~i~~~L~~ta~~~g~~------------~~d~~~G~G 239 (239)
T cd05561 202 LALLLQASP-LAPDDARARLAATAKDLGPP------------GRDPVFGYG 239 (239)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHhhccCCC------------CcCCCcCCC
Confidence 999999999 99999999999999987532 233488987
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=374.11 Aligned_cols=247 Identities=33% Similarity=0.420 Sum_probs=195.6
Q ss_pred CCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCccccc
Q 005334 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGF 168 (701)
Q Consensus 89 G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~ 168 (701)
|+||+|||||+||+++||+|.+.-.. |.+..++.....++.......+.|..+|||||||||+|.....
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~d~~~HGT~vagii~g~~~~~------ 69 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRG-----WGGGSADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGNDGDG------ 69 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccc-----cCCCCcccccccccCCCCCCCCCCCCCchhhhhhheeecCCCC------
Confidence 89999999999999999999875111 1111111111111122223456788999999999999874321
Q ss_pred CCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH------------cCCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334 169 ASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE------------DGVNVMSMSIGGGLTDYYRDTVAIGAFTA 236 (701)
Q Consensus 169 ~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~------------~gvdVInlSlG~~~~~~~~d~i~~a~~~a 236 (701)
...|+||+|+|+.+|++...++...+++++++++++ .|++|||||||.... ....+..++..+
T Consensus 70 ---~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~--~~~~~~~~~~~~ 144 (264)
T cd07481 70 ---QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG--DNEWLQPAVAAW 144 (264)
T ss_pred ---CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC--CchHHHHHHHHH
Confidence 128999999999999998877888899999999985 789999999998643 234555666678
Q ss_pred HHCCCEEEEecCCCCCCCCc---cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCC
Q 005334 237 MAQGIFVSCSAGNGGPYANS---ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVS 313 (701)
Q Consensus 237 ~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~ 313 (701)
.++|++||+||||+|..... .+...|++|+|||.+
T Consensus 145 ~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~------------------------------------------ 182 (264)
T cd07481 145 RAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD------------------------------------------ 182 (264)
T ss_pred HHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC------------------------------------------
Confidence 88999999999999865432 456778888888732
Q ss_pred CCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 005334 314 STSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIK 393 (701)
Q Consensus 314 ~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 393 (701)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEee
Q 005334 394 NYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNII 473 (701)
Q Consensus 394 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 473 (701)
..+.++.||++||.. .+++||||+|||.+|+++++.+ .|..+
T Consensus 183 -----------------------~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~-------------~~~~~ 224 (264)
T cd07481 183 -----------------------RNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG-------------GYGSS 224 (264)
T ss_pred -----------------------CCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC-------------ceEee
Confidence 112567899999988 4899999999999999998764 78899
Q ss_pred ccccchhhhHhHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 005334 474 SGTSMSCPHVSGLAALLKAAHPE--WSPSAIKSALMTTAY 511 (701)
Q Consensus 474 sGTSmAaP~VAG~aALl~~~~P~--~sp~~Ik~~L~~TA~ 511 (701)
+|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 225 ~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 225 SGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=383.54 Aligned_cols=220 Identities=25% Similarity=0.276 Sum_probs=165.1
Q ss_pred CCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHHcCCeEEEEecc
Q 005334 142 RDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG---CFGSDILAGMDKAIEDGVNVMSMSIG 218 (701)
Q Consensus 142 ~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~ai~~gvdVInlSlG 218 (701)
.|..+|||||||||||+..++ ..+.|+||+|+|+.+|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 467799999999999985332 2358999999999999986532 23457999999999999999999999
Q ss_pred CCCCCCccCHHHHHHHH-HHHCCCEEEEecCCCCCCCCcccc---CCCceEEecCCccCceeeeEEEcCCCcEEEEEEee
Q 005334 219 GGLTDYYRDTVAIGAFT-AMAQGIFVSCSAGNGGPYANSISN---VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLY 294 (701)
Q Consensus 219 ~~~~~~~~d~i~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~ 294 (701)
..........+...+.+ +.++|+++|+||||+|+...++.. .++++|+|||..........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 86431112233333433 457899999999999987766542 46899999995321100000
Q ss_pred cCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccc
Q 005334 295 SRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVA 374 (701)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 374 (701)
|.
T Consensus 319 ---------y~--------------------------------------------------------------------- 320 (412)
T cd04857 319 ---------YS--------------------------------------------------------------------- 320 (412)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred cccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccC
Q 005334 375 DAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTG 454 (701)
Q Consensus 375 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~ 454 (701)
......+.++.||||||+. ++.+||||+|||+.|.+.-..
T Consensus 321 --------------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~ 360 (412)
T cd04857 321 --------------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNW 360 (412)
T ss_pred --------------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccC
Confidence 0001234688999999998 699999999999999875221
Q ss_pred CCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHh----hCCCCCHHHHHHHHHhccccC
Q 005334 455 AVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPSAIKSALMTTAYST 513 (701)
Q Consensus 455 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~~ 513 (701)
. ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 361 ~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 361 T-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred C-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 1 12688999999999999999999975 579999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=372.97 Aligned_cols=251 Identities=27% Similarity=0.386 Sum_probs=181.9
Q ss_pred CCCEEEEEccCCCCCCCCccCCCCCC---CC--------Cccceee--Eeccc----------CCccC------CCCCCC
Q 005334 90 SEVIVGVLDTGVWPEIKSFDDTGMGP---VP--------RGWKGVW--YEEAV----------GPIDE------TAESKS 140 (701)
Q Consensus 90 ~gVvVgVIDtGId~~Hp~f~~~~~~~---~~--------~~~~g~~--~~~~~----------~~~~~------~~~~~~ 140 (701)
|+|+|||||||||++||+|++..+.. .+ ..|..+| |+... ...+. ......
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 68999999999999999998753211 00 0111111 11100 00000 011223
Q ss_pred CCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCC
Q 005334 141 PRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGG 220 (701)
Q Consensus 141 ~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~ 220 (701)
+.+..+|||||||||||...+.. | +.|+||+|+|+.+|++........++++||+||++.|++|||||||..
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~n~~---g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~ 152 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRDNGI---G-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKS 152 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCCCCC---c-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 45688999999999999854321 2 489999999999999865446778999999999999999999999974
Q ss_pred CCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCcc---c--------cCCCceEEecCCccCceeeeEEEcCCCcEEE
Q 005334 221 LTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSI---S--------NVAPWITTVGAGTLDRNFPTYVSLGNGKSFS 289 (701)
Q Consensus 221 ~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---~--------~~ap~vitVgAst~~~~~~~~~~l~~g~~~~ 289 (701)
... ....+..++..|.++|+++|+||||+|...... + ...+++|+|||....
T Consensus 153 ~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~---------------- 215 (291)
T cd07483 153 FSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK---------------- 215 (291)
T ss_pred CCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc----------------
Confidence 322 234566677788999999999999998542211 1 122444555542110
Q ss_pred EEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCC
Q 005334 290 GVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYG 369 (701)
Q Consensus 290 g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 369 (701)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEE
Q 005334 370 EELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNIL 449 (701)
Q Consensus 370 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~ 449 (701)
.....++.||++|+. +|||.|||++|+
T Consensus 216 ----------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~APG~~i~ 242 (291)
T cd07483 216 ----------------------------------------------YENNLVANFSNYGKK-------NVDVFAPGERIY 242 (291)
T ss_pred ----------------------------------------------CCcccccccCCCCCC-------ceEEEeCCCCeE
Confidence 011256789999974 459999999999
Q ss_pred ecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 450 AGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 450 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
++.+.. .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 243 s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 243 STTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 987654 7899999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=368.32 Aligned_cols=261 Identities=26% Similarity=0.307 Sum_probs=200.9
Q ss_pred CCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCcc-ceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccccc
Q 005334 82 LFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGW-KGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVV 160 (701)
Q Consensus 82 ~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~ 160 (701)
+|..+++|+||+|||||||||++||+|.+.........+ ...++. .+.........|..||||||||||+|+..
T Consensus 2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~gHGT~VAgiia~~~~ 76 (273)
T cd07485 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPAVNGYNFV-----PNVGDIDNDVSVGGGHGTHVAGTIAAVNN 76 (273)
T ss_pred ccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccccCCcccc-----cccCCcCCCCCCCCCCHHHHHHHHHcccC
Confidence 799999999999999999999999999987211000000 000000 00011123456788999999999999754
Q ss_pred CCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHC
Q 005334 161 NGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQ 239 (701)
Q Consensus 161 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~ 239 (701)
.....-|.+ .+.|+||+|+|+.+|++...+ +...+++++|++|++.|++|||||||......+...+..++..+.++
T Consensus 77 ~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~a~~~~~~~ 154 (273)
T cd07485 77 NGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIEN 154 (273)
T ss_pred CCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccccCHHHHHHHHHHHHh
Confidence 332221221 236799999999999998754 77788999999999999999999999865444556677777788888
Q ss_pred -------CCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCC
Q 005334 240 -------GIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANV 312 (701)
Q Consensus 240 -------Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~ 312 (701)
|++||+||||+|......+...|++|+||+.+.
T Consensus 155 ~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~---------------------------------------- 194 (273)
T cd07485 155 AGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT---------------------------------------- 194 (273)
T ss_pred cccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC----------------------------------------
Confidence 999999999999887766778899999998421
Q ss_pred CCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHH
Q 005334 313 SSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAI 392 (701)
Q Consensus 313 ~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l 392 (701)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCC-cEEecccCCCCCCCCCCCcccceeE
Q 005334 393 KNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGV-NILAGWTGAVGPTGLESDKRHVSFN 471 (701)
Q Consensus 393 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~ 471 (701)
.+.++.||++|+.. ||+|||. .|+++++.... .....|.
T Consensus 195 -------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~-------~~~~~~~ 234 (273)
T cd07485 195 -------------------------NDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG-------DGGGNYE 234 (273)
T ss_pred -------------------------CCCcCccccCCCce--------EEEeCCCCccccccccccC-------CCCCCeE
Confidence 12556899999876 9999999 88888765311 1123689
Q ss_pred eeccccchhhhHhHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 005334 472 IISGTSMSCPHVSGLAALLKAAHPE-WSPSAIKSALMTT 509 (701)
Q Consensus 472 ~~sGTSmAaP~VAG~aALl~~~~P~-~sp~~Ik~~L~~T 509 (701)
.++|||||||+|||++|||+|++|+ |+|+|||++|++|
T Consensus 235 ~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 235 YLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred eeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=366.46 Aligned_cols=242 Identities=30% Similarity=0.355 Sum_probs=188.0
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCC-CCCCCCChhHHHHhhcccccCCCcccccC
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKS-PRDDDGHGTHTSTTAAGSVVNGASLFGFA 169 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~D~~gHGThvAgiaAG~~~~~~~~~G~~ 169 (701)
||+||||||||+++||+|....... ..++.+. + +....... ..|..+|||||||+|+|+..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~~-~~~i~~~-~-------~~~~~~~~~~~~~~~HGT~vagiia~~~~--------- 62 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLFK-NLRILGE-Y-------DFVDNSNNTNYTDDDHGTAVLSTMAGYTP--------- 62 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcccc-CCceeee-e-------cCccCCCCCCCCCCCchhhhheeeeeCCC---------
Confidence 7999999999999999995221100 0011111 1 11112222 36788999999999999742
Q ss_pred CCceeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCc------------cCHHHHHHH
Q 005334 170 SGTARGMAAQARVATYKVCWLAG---CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYY------------RDTVAIGAF 234 (701)
Q Consensus 170 ~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~------------~d~i~~a~~ 234 (701)
+...|+||+|+|+.+|+..... ....++++|+++|.+.|++|||||||....... ...+..++.
T Consensus 63 -~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 141 (261)
T cd07493 63 -GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAAN 141 (261)
T ss_pred -CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHH
Confidence 2358999999999999875432 345678999999999999999999998643211 235667778
Q ss_pred HHHHCCCEEEEecCCCCCC---CCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCC
Q 005334 235 TAMAQGIFVSCSAGNGGPY---ANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAAN 311 (701)
Q Consensus 235 ~a~~~Gi~vV~AAGN~G~~---~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~ 311 (701)
.|.++|+++|+||||+|.. ....+...|++|+|||..
T Consensus 142 ~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~---------------------------------------- 181 (261)
T cd07493 142 IAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD---------------------------------------- 181 (261)
T ss_pred HHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec----------------------------------------
Confidence 8999999999999999976 345566788999999731
Q ss_pred CCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHH
Q 005334 312 VSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDA 391 (701)
Q Consensus 312 ~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~ 391 (701)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeE
Q 005334 392 IKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFN 471 (701)
Q Consensus 392 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 471 (701)
..+.++.||++||.. ++++||||+|||.+|++..... .|.
T Consensus 182 -------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~~-------------~~~ 221 (261)
T cd07493 182 -------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGDG-------------NIT 221 (261)
T ss_pred -------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCCC-------------cEE
Confidence 112567899999987 6899999999999999854432 689
Q ss_pred eeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 472 IISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 472 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
.++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 222 ~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 222 YANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred eeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=364.26 Aligned_cols=256 Identities=34% Similarity=0.457 Sum_probs=204.8
Q ss_pred CCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCccccc
Q 005334 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGF 168 (701)
Q Consensus 89 G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~ 168 (701)
|+||+|+|||+||+++||+|.+.... .+.. ...........|..+|||||||+|+|.....
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~~~~---------~~~~~~~~~~~d~~~HGT~vAgiiag~~~~~------ 61 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----FADF---------VNTVNGRTTPYDDNGHGTHVAGIIAGSGRAS------ 61 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----cccc---------cccccCCCCCCCCCCchHHHHHHHhcCCccc------
Confidence 89999999999999999999976322 1110 0001123456778899999999999985432
Q ss_pred CCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc----CCeEEEEeccCCCC-CCccCHHHHHHHHHHHCCCE
Q 005334 169 ASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED----GVNVMSMSIGGGLT-DYYRDTVAIGAFTAMAQGIF 242 (701)
Q Consensus 169 ~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~----gvdVInlSlG~~~~-~~~~d~i~~a~~~a~~~Gi~ 242 (701)
.+.+.|+||+|+|+.+|+++..+ ....++++||+++++. +++|||||||.... ....+.+..++.++.++|++
T Consensus 62 -~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gil 140 (264)
T cd07487 62 -NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIV 140 (264)
T ss_pred -CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCE
Confidence 22358999999999999998776 6778999999999998 99999999998653 45667888888899999999
Q ss_pred EEEecCCCCCCCC--ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCc
Q 005334 243 VSCSAGNGGPYAN--SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNL 320 (701)
Q Consensus 243 vV~AAGN~G~~~~--~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 320 (701)
||+||||+|.... ..+...+++|+|||...+..
T Consensus 141 vv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------------------------------- 175 (264)
T cd07487 141 VVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------------------------------- 175 (264)
T ss_pred EEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------------------------------
Confidence 9999999998765 55567889999998432110
Q ss_pred cCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCC
Q 005334 321 CMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDP 400 (701)
Q Consensus 321 C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 400 (701)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchh
Q 005334 401 GPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480 (701)
Q Consensus 401 ~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 480 (701)
....++.||++||+. ++++||||+|||++|+++.+..... .......|..++||||||
T Consensus 176 ----------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~~~~GTS~Aa 233 (264)
T cd07487 176 ----------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVGSGYFEMSGTSMAT 233 (264)
T ss_pred ----------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCCCceEeccccchHH
Confidence 001568899999998 6899999999999999986653111 112224789999999999
Q ss_pred hhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 481 PHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 481 P~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
|+|||++|||+|++|+|++.+||++|++||+
T Consensus 234 p~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 234 PHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=363.91 Aligned_cols=262 Identities=26% Similarity=0.237 Sum_probs=185.9
Q ss_pred EEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCCc
Q 005334 93 IVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGT 172 (701)
Q Consensus 93 vVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~ 172 (701)
+|||||||||.+||+|.+.... +.++ . .....+.|..||||||||||++..... ..
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~~-------~~~~-------~--~~~~~~~d~~gHGT~vAgiia~~~~~~--------~~ 57 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALAE-------DDLD-------S--DEPGWTADDLGHGTAVAGLALYGDLTL--------PG 57 (291)
T ss_pred EEEEecCCCCCCChhhhhhhcc-------cccc-------c--cCCCCcCCCCCChHHHHHHHHcCcccC--------CC
Confidence 7999999999999999875211 0000 0 011116789999999999999764321 12
Q ss_pred eeeecCCCeEEEEEeecCCC-----CChHHHHHHHHHHHHcC---CeEEEEeccCCCCCCc--cCHHHHHHH-HHHHCCC
Q 005334 173 ARGMAAQARVATYKVCWLAG-----CFGSDILAGMDKAIEDG---VNVMSMSIGGGLTDYY--RDTVAIGAF-TAMAQGI 241 (701)
Q Consensus 173 ~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~ai~~g---vdVInlSlG~~~~~~~--~d~i~~a~~-~a~~~Gi 241 (701)
..|+||+++|+.+|++...| ....++++||+|+++.+ ++|||||||....... ...+..++. .+.++|+
T Consensus 58 ~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~id~~a~~~gv 137 (291)
T cd04847 58 NGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAALDQLAAEYDV 137 (291)
T ss_pred CCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHHHHHHhccCCe
Confidence 37999999999999998763 56678999999999853 5999999998653211 123444443 3568999
Q ss_pred EEEEecCCCCCCCCc------------cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEc
Q 005334 242 FVSCSAGNGGPYANS------------ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDA 309 (701)
Q Consensus 242 ~vV~AAGN~G~~~~~------------~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~ 309 (701)
+||+||||+|..... .+..++++|+|||.+.+......-
T Consensus 138 lvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s----------------------------- 188 (291)
T cd04847 138 LFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA----------------------------- 188 (291)
T ss_pred EEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc-----------------------------
Confidence 999999999977543 244678999999964432210000
Q ss_pred CCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhH
Q 005334 310 ANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAG 389 (701)
Q Consensus 310 ~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g 389 (701)
.
T Consensus 189 ------------~------------------------------------------------------------------- 189 (291)
T cd04847 189 ------------R------------------------------------------------------------------- 189 (291)
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCC-----CCCCCC
Q 005334 390 DAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGP-----TGLESD 464 (701)
Q Consensus 390 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~-----~~~~~~ 464 (701)
.+.......+.||+|||.. ++.+||||+|||++|.+........ ......
T Consensus 190 -----------------------~~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T cd04847 190 -----------------------YSAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSS 244 (291)
T ss_pred -----------------------ccccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeecccC
Confidence 0000001223399999998 6999999999999998865432100 000011
Q ss_pred cccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 465 KRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 465 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
.....|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 245 ~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 245 PSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 22347999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=353.13 Aligned_cols=232 Identities=35% Similarity=0.491 Sum_probs=192.3
Q ss_pred CCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccC
Q 005334 82 LFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVN 161 (701)
Q Consensus 82 ~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~ 161 (701)
+|..+++|+||+|||||+||+++||+|.++... + +.. . ......|..+|||||||||+|+.
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~~~-------~--~~~-------~-~~~~~~d~~~HGT~vAgiia~~~-- 77 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRAIW-------G--ADF-------V-GGDPDSDCNGHGTHVAGTVGGKT-- 77 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCeee-------e--eec-------C-CCCCCCCCCccHHHHHHHHHccc--
Confidence 666789999999999999999999999875211 0 111 0 11125688899999999999863
Q ss_pred CCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc-----CCeEEEEeccCCCCCCccCHHHHHHHH
Q 005334 162 GASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED-----GVNVMSMSIGGGLTDYYRDTVAIGAFT 235 (701)
Q Consensus 162 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~-----gvdVInlSlG~~~~~~~~d~i~~a~~~ 235 (701)
.||||+|+|+.+|+++..+ ...++++++++++++. +++|||||||... ...+..++.+
T Consensus 78 ------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~----~~~~~~~~~~ 141 (255)
T cd04077 78 ------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA----STALDAAVAA 141 (255)
T ss_pred ------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC----CHHHHHHHHH
Confidence 6999999999999998775 6778899999999987 4899999999854 4556667778
Q ss_pred HHHCCCEEEEecCCCCCCC-CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCC
Q 005334 236 AMAQGIFVSCSAGNGGPYA-NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSS 314 (701)
Q Consensus 236 a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~ 314 (701)
+.++|+++|+||||+|... ...+...|++|+|||.+.
T Consensus 142 ~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~------------------------------------------ 179 (255)
T cd04077 142 AVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS------------------------------------------ 179 (255)
T ss_pred HHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC------------------------------------------
Confidence 9999999999999999765 455667899999998421
Q ss_pred CcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHH
Q 005334 315 TSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKN 394 (701)
Q Consensus 315 ~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 394 (701)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeec
Q 005334 395 YISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIIS 474 (701)
Q Consensus 395 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 474 (701)
.+..+.||++||.. ||+|||.+|+++..... ..|..++
T Consensus 180 -----------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~-----------~~~~~~~ 217 (255)
T cd04077 180 -----------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGSD-----------TATATLS 217 (255)
T ss_pred -----------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCCC-----------CcEEeeC
Confidence 11467899999987 99999999999876421 3789999
Q ss_pred cccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 005334 475 GTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYS 512 (701)
Q Consensus 475 GTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~ 512 (701)
|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 218 GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 218 GTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=359.75 Aligned_cols=252 Identities=26% Similarity=0.339 Sum_probs=183.8
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
+..+|+.+++|+||+||||||||+..|| |....+. +... .. ........|..|||||||+++
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~~~~------~~-~~~~~~~~D~~gHGT~vag~i--- 71 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------VRVV------LA-PGATDPACDENGHGTGESANL--- 71 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------ceee------cC-CCCCCCCCCCCCcchheeece---
Confidence 4569999999999999999999999898 7654321 1110 00 011234568889999999865
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCCCCCC----------ccCH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDY----------YRDT 228 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~----------~~d~ 228 (701)
.||||+|+|+.+|+++. ...++++||+||++++++|||||||...... ....
T Consensus 72 ---------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~a 133 (298)
T cd07494 72 ---------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKA 133 (298)
T ss_pred ---------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccccccchhhHH
Confidence 69999999999999864 5677999999999999999999999853211 1335
Q ss_pred HHHHHHHHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEE
Q 005334 229 VAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVD 308 (701)
Q Consensus 229 i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~ 308 (701)
+..++.+|.++|++||+||||++. .++...|++|+|||++.+.. +..
T Consensus 134 l~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~--------------------- 180 (298)
T cd07494 134 LAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GAR--------------------- 180 (298)
T ss_pred HHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccc---------------------
Confidence 777788899999999999999974 46888999999999533211 000
Q ss_pred cCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhh
Q 005334 309 AANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKA 388 (701)
Q Consensus 309 ~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~ 388 (701)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcE----------------EecCCcEEecc
Q 005334 389 GDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDL----------------IAPGVNILAGW 452 (701)
Q Consensus 389 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI----------------~APG~~I~sa~ 452 (701)
......+.|+| . ..+++.|||+ +|||..|.++.
T Consensus 181 ---------------------------~~~~~~~~~~s---~-~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~ 229 (298)
T cd07494 181 ---------------------------RASSYASGFRS---K-IYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSC 229 (298)
T ss_pred ---------------------------cccccccCccc---c-cCCCCccCccccccCcCCcccccccccCCCcceeccc
Confidence 00000011111 1 1245667776 47999987655
Q ss_pred cCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCC
Q 005334 453 TGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNG 515 (701)
Q Consensus 453 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~ 515 (701)
..... .......|..++|||||||||||++|||+|++|+|++++||.+|++||+++..
T Consensus 230 ~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 230 AAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred cCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 32110 00112479999999999999999999999999999999999999999997743
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=351.86 Aligned_cols=241 Identities=33% Similarity=0.432 Sum_probs=199.1
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
+..+|..+ +|+||+|||||+||+++||+|....+. .. + +.......+.|..+|||||||||++.
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~~~---~~-----~-------~~~~~~~~~~d~~~HGT~vagii~~~ 81 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVKFV---LG-----Y-------DFVDNDSDAMDDNGHGTHVAGIIAAA 81 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccCCcc---cc-----e-------eccCCCCCCCCCCCcHHHHHHHHhCc
Confidence 35689888 999999999999999999998543211 00 1 11112223668889999999999987
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAM 237 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~ 237 (701)
.... ..+.|+||+|+|+.+|+++..+ +...+++++|+++++.|++|||||||... ....+..++..+.
T Consensus 82 ~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~---~~~~~~~~~~~a~ 150 (260)
T cd07484 82 TNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL---GSTALQEAINYAW 150 (260)
T ss_pred cCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC---CCHHHHHHHHHHH
Confidence 4332 2248999999999999998765 77889999999999999999999999853 4456777777888
Q ss_pred HCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcC
Q 005334 238 AQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSS 317 (701)
Q Consensus 238 ~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (701)
++|++||+||||+|.....+++..|++|+||+.+.
T Consensus 151 ~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~--------------------------------------------- 185 (260)
T cd07484 151 NKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ--------------------------------------------- 185 (260)
T ss_pred HCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC---------------------------------------------
Confidence 99999999999999988888889999999998421
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHh
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecccc
Q 005334 398 SDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTS 477 (701)
Q Consensus 398 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 477 (701)
.+..+.||++|+.. |++|||.+|++..+.. .|..++|||
T Consensus 186 --------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~-------------~~~~~~GTS 224 (260)
T cd07484 186 --------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPDG-------------DYAYMSGTS 224 (260)
T ss_pred --------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCCC-------------CEEEeeeHH
Confidence 11456789999766 9999999999887653 789999999
Q ss_pred chhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 005334 478 MSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYST 513 (701)
Q Consensus 478 mAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~ 513 (701)
||||+|||++|||++++| |++.+||++|++||+++
T Consensus 225 ~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 225 MATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=348.07 Aligned_cols=253 Identities=36% Similarity=0.459 Sum_probs=187.9
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCC
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFAS 170 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~ 170 (701)
||+|||||+|||++||+|.+.... |+ ++.. +.........|..+|||||||||+|+.. .
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~~-----~~--~~~~-----~~~~~~~~~~d~~~HGT~vAgiia~~~~---------~ 59 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVAQ-----WA--DFDE-----NRRISATEVFDAGGHGTHVSGTIGGGGA---------K 59 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccCC-----ce--eccC-----CCCCCCCCCCCCCCcHHHHHHHHhcCCC---------C
Confidence 799999999999999999875321 11 1110 0111223456788999999999999854 1
Q ss_pred CceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHH-CCCEEEEecCC
Q 005334 171 GTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMA-QGIFVSCSAGN 249 (701)
Q Consensus 171 g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~-~Gi~vV~AAGN 249 (701)
+...|+||+|+|+.+|++...++...+++++|+++++.+++|||||||..... .+.+..++....+ +|++||+||||
T Consensus 60 ~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~~~~~~~~g~lvV~aAGN 137 (254)
T cd07490 60 GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAVEALSNQTGALFVVSAGN 137 (254)
T ss_pred CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHHHHHHHcCCCEEEEeCCC
Confidence 22479999999999999987778889999999999999999999999986533 4555555444443 69999999999
Q ss_pred CCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCC
Q 005334 250 GGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPA 329 (701)
Q Consensus 250 ~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~ 329 (701)
+|......+...|++|+|||.+.+........
T Consensus 138 ~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~------------------------------------------------ 169 (254)
T cd07490 138 EGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS------------------------------------------------ 169 (254)
T ss_pred CCCCCCCCCccCCceeEEecccccCCccCccC------------------------------------------------
Confidence 99887777788999999999643221000000
Q ss_pred CccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEec
Q 005334 330 KVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISR 409 (701)
Q Consensus 330 ~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 409 (701)
T Consensus 170 -------------------------------------------------------------------------------- 169 (254)
T cd07490 170 -------------------------------------------------------------------------------- 169 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHH
Q 005334 410 GTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAAL 489 (701)
Q Consensus 410 ~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 489 (701)
.........+.+|... ....||||.|||.+|+++.... .....|..++|||||||+|||++||
T Consensus 170 -------~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~AaP~vaG~aAl 232 (254)
T cd07490 170 -------FGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAAPHVAGVAAL 232 (254)
T ss_pred -------CcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHHHHHHHHHHH
Confidence 0001112223333332 4678999999999999975321 1123789999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHhccc
Q 005334 490 LKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 490 l~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
|+|++|+|++.+||++|++||+
T Consensus 233 ~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 233 LAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=352.52 Aligned_cols=256 Identities=30% Similarity=0.371 Sum_probs=189.2
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCC---C---CCccceeeEeccc---CC-------ccCCCCCCCCCCCCCChhHHHHh
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGP---V---PRGWKGVWYEEAV---GP-------IDETAESKSPRDDDGHGTHTSTT 154 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~---~---~~~~~g~~~~~~~---~~-------~~~~~~~~~~~D~~gHGThvAgi 154 (701)
||+|||||||||++||+|.+..... + ....++...+... +. ...........+..+||||||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgi 80 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTHVAGT 80 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHHHHHHH
Confidence 7999999999999999999764210 0 0000000000000 00 00001122345678999999999
Q ss_pred hcccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHH----------HcCCeEEEEeccCCCCCC
Q 005334 155 AAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAI----------EDGVNVMSMSIGGGLTDY 224 (701)
Q Consensus 155 aAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai----------~~gvdVInlSlG~~~~~~ 224 (701)
|||...++ .| +.||||+|+|+.+|+++..+...+++++|++|++ .++++|||||||.....
T Consensus 81 iaa~~~~~---~~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~~~- 151 (285)
T cd07496 81 IAAVTNNG---VG-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGAC- 151 (285)
T ss_pred HhCcCCCC---CC-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCCCC-
Confidence 99986422 12 3899999999999999887778899999999998 45789999999985432
Q ss_pred ccCHHHHHHHHHHHCCCEEEEecCCCCCCC-CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCce
Q 005334 225 YRDTVAIGAFTAMAQGIFVSCSAGNGGPYA-NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSM 303 (701)
Q Consensus 225 ~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~ 303 (701)
...+..++..+.++|++||+||||+|... ...+...|++|+|||.+.
T Consensus 152 -~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------------------- 199 (285)
T cd07496 152 -SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL------------------------------- 199 (285)
T ss_pred -CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC-------------------------------
Confidence 45677777789999999999999999875 556677889999998421
Q ss_pred eeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEE
Q 005334 304 VPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSAN 383 (701)
Q Consensus 304 ~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~ 383 (701)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCC--CC
Q 005334 384 VGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT--GL 461 (701)
Q Consensus 384 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~--~~ 461 (701)
.+.++.||++|+.. ||.|||++|.+......... ..
T Consensus 200 ----------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~ 237 (285)
T cd07496 200 ----------------------------------RGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTG 237 (285)
T ss_pred ----------------------------------CCCcccccCCCCCC--------CEEeCCCCccccCCCCcccccccc
Confidence 12567899999976 99999999998876542110 00
Q ss_pred CCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhc
Q 005334 462 ESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509 (701)
Q Consensus 462 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~T 509 (701)
........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 238 ~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 238 TTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 111223468899999999999999999999999999999999999986
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=355.97 Aligned_cols=277 Identities=29% Similarity=0.329 Sum_probs=198.0
Q ss_pred CCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCc
Q 005334 85 TSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGAS 164 (701)
Q Consensus 85 ~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~ 164 (701)
++++|+||+|||||+|||++||+|.+....... ......... ........|..+|||||||||+|+......
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~~~~-~~~~~~~~~-------~~~~~~~~d~~~HGT~vAgiia~~~~~~~~ 73 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFNKTN-LFHRKIVRY-------DSLSDTKDDVDGHGTHVAGIIAGKGNDSSS 73 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcCcCc-cCcccEEEe-------eccCCCCCCCCCCcchhheeeccCCcCCCc
Confidence 578999999999999999999999764221000 000000000 001112237899999999999998644321
Q ss_pred ccccCCCceeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHH-H-CC
Q 005334 165 LFGFASGTARGMAAQARVATYKVCWLAG--CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAM-A-QG 240 (701)
Q Consensus 165 ~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~-~-~G 240 (701)
...+.|+||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||......+ .....++.++. + +|
T Consensus 74 -----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~~-~~~~~~~~~~~~~~~g 147 (293)
T cd04842 74 -----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGY-TLLARAYDQFAYNNPD 147 (293)
T ss_pred -----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcccc-chHHHHHHHHHHhCCC
Confidence 11348999999999999998765 566778999999999999999999998654212 23333333333 3 89
Q ss_pred CEEEEecCCCCCCCC---ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcC
Q 005334 241 IFVSCSAGNGGPYAN---SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSS 317 (701)
Q Consensus 241 i~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (701)
++||+||||+|.... ..+...+++|+|||.+.......
T Consensus 148 ~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~--------------------------------------- 188 (293)
T cd04842 148 ILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG--------------------------------------- 188 (293)
T ss_pred eEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc---------------------------------------
Confidence 999999999997764 56678899999999654322000
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHh
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
..|..
T Consensus 189 -~~~~~-------------------------------------------------------------------------- 193 (293)
T cd04842 189 -EGGLG-------------------------------------------------------------------------- 193 (293)
T ss_pred -ccccc--------------------------------------------------------------------------
Confidence 00000
Q ss_pred cCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecccc
Q 005334 398 SDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTS 477 (701)
Q Consensus 398 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 477 (701)
.......++.||++||+. .+++||||+|||++|+++...... ........|..++|||
T Consensus 194 ----------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~----~~~~~~~~~~~~~GTS 251 (293)
T cd04842 194 ----------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGG----IGDTSDSAYTSKSGTS 251 (293)
T ss_pred ----------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCC----CCCCChhheeecCcHH
Confidence 012234789999999987 689999999999999999765310 0111224788999999
Q ss_pred chhhhHhHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 005334 478 MSCPHVSGLAALLKAAH-----P---EWSPSAIKSALMTTAY 511 (701)
Q Consensus 478 mAaP~VAG~aALl~~~~-----P---~~sp~~Ik~~L~~TA~ 511 (701)
||||+|||++|||+|++ | .+++.+||++|++||+
T Consensus 252 ~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 252 MATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=343.89 Aligned_cols=239 Identities=29% Similarity=0.405 Sum_probs=189.2
Q ss_pred CEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCC
Q 005334 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASG 171 (701)
Q Consensus 92 VvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g 171 (701)
|+|||||+||+++||+|.+... ....|. .......+.|..+|||||||||+|+..+. .
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~--~~~~~~------------~~~~~~~~~~~~~HGT~vAgiiag~~~~~--------~ 58 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPK--LVPGWN------------FVSNNDPTSDIDGHGTACAGVAAAVGNNG--------L 58 (242)
T ss_pred CEEEEecCCCCCCChhhccCcC--ccCCcc------------ccCCCCCCCCCCCCHHHHHHHHHhccCCC--------c
Confidence 7899999999999999997410 011121 11112245788999999999999985322 2
Q ss_pred ceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCC-CCccCHHHHHHHHHHH-CCCEEEEecC
Q 005334 172 TARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLT-DYYRDTVAIGAFTAMA-QGIFVSCSAG 248 (701)
Q Consensus 172 ~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~-~~~~d~i~~a~~~a~~-~Gi~vV~AAG 248 (701)
.+.|+||+|+|+.+|++...+ +...++.++++++++.+++|||||||.... ..+...+..++..+.+ +|+++|+|||
T Consensus 59 ~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaG 138 (242)
T cd07498 59 GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAG 138 (242)
T ss_pred eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCCeEEEEecC
Confidence 248999999999999998764 678889999999999999999999998643 3345667777777888 9999999999
Q ss_pred CCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCC
Q 005334 249 NGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIP 328 (701)
Q Consensus 249 N~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~ 328 (701)
|+|......+...|++|+|||.+.
T Consensus 139 N~g~~~~~~pa~~~~vi~Vga~~~-------------------------------------------------------- 162 (242)
T cd07498 139 NSGRSVSSGYAANPSVIAVAATDS-------------------------------------------------------- 162 (242)
T ss_pred CCCCccCCCCcCCCCeEEEEEeCC--------------------------------------------------------
Confidence 999887767788999999998421
Q ss_pred CCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEe
Q 005334 329 AKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIIS 408 (701)
Q Consensus 329 ~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~ 408 (701)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHH
Q 005334 409 RGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAA 488 (701)
Q Consensus 409 ~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 488 (701)
.+.++.||++||.. |++|||.+++......... .......|..++|||||||+|||++|
T Consensus 163 ---------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~A 221 (242)
T cd07498 163 ---------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFASPVAAGVAA 221 (242)
T ss_pred ---------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHHHHHHHHHHH
Confidence 12467899999987 9999999998885543111 11123478899999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhc
Q 005334 489 LLKAAHPEWSPSAIKSALMTT 509 (701)
Q Consensus 489 Ll~~~~P~~sp~~Ik~~L~~T 509 (701)
||+|++|+|++++||++|++|
T Consensus 222 ll~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 222 LILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=351.48 Aligned_cols=264 Identities=27% Similarity=0.330 Sum_probs=183.2
Q ss_pred CCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCC
Q 005334 84 PTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGA 163 (701)
Q Consensus 84 ~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~ 163 (701)
..+++|+||+|||||+|||++||+|.+..... . +. .+...+.|..||||||||||+|+...
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~~~-------~---------~~-~~~~~~~d~~gHGT~VAgiiag~~~~-- 62 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDITT-------K---------SF-VGGEDVQDGHGHGTHCAGTIFGRDVP-- 62 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcccC-------c---------cc-CCCCCCCCCCCcHHHHHHHHhcccCC--
Confidence 35789999999999999999999998763210 0 00 11122568899999999999998543
Q ss_pred cccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCC----------CccCHHHHH
Q 005334 164 SLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTD----------YYRDTVAIG 232 (701)
Q Consensus 164 ~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~----------~~~d~i~~a 232 (701)
+...||||+|+|+.+|++...+ ....++++||+||++.|++|||||||..... .....+...
T Consensus 63 -------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~ 135 (297)
T cd07480 63 -------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAY 135 (297)
T ss_pred -------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCchhHHHHHHH
Confidence 2237999999999999997654 6777899999999999999999999985411 111122222
Q ss_pred HHHH---------------HHCCCEEEEecCCCCCCCCcccc-----CCCceEEecCCccCceeeeEEEcCCCcEEEEEE
Q 005334 233 AFTA---------------MAQGIFVSCSAGNGGPYANSISN-----VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVS 292 (701)
Q Consensus 233 ~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s 292 (701)
...+ .++|++||+||||+|........ ..+++++|++..
T Consensus 136 ~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~--------------------- 194 (297)
T cd07480 136 RQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVG--------------------- 194 (297)
T ss_pred HHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEEC---------------------
Confidence 2223 67999999999999865332111 112222222210
Q ss_pred eecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccc
Q 005334 293 LYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEEL 372 (701)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 372 (701)
T Consensus 195 -------------------------------------------------------------------------------- 194 (297)
T cd07480 195 -------------------------------------------------------------------------------- 194 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecc
Q 005334 373 VADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGW 452 (701)
Q Consensus 373 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~ 452 (701)
.......|+++.+. ...||||+|||.+|++++
T Consensus 195 --------------------------------------------~~~~~~~~~~~~~~----~~~~~dv~ApG~~i~s~~ 226 (297)
T cd07480 195 --------------------------------------------ALGRTGNFSAVANF----SNGEVDIAAPGVDIVSAA 226 (297)
T ss_pred --------------------------------------------CCCCCCCccccCCC----CCCceEEEeCCCCeEeec
Confidence 00011222333222 235789999999999987
Q ss_pred cCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCC
Q 005334 453 TGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPF 532 (701)
Q Consensus 453 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 532 (701)
+.. .|..++|||||||+|||++|||+|++|++++.+++.+|+.......... ......+.
T Consensus 227 ~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~ 286 (297)
T cd07480 227 PGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQ-------FAPGLDLP 286 (297)
T ss_pred CCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCC-------CCCCCChh
Confidence 764 7999999999999999999999999999998888888774332210000 02234556
Q ss_pred CCCccccCcc
Q 005334 533 DFGAGHVDPV 542 (701)
Q Consensus 533 ~~G~G~vn~~ 542 (701)
++|+|++++.
T Consensus 287 ~~g~G~~~~~ 296 (297)
T cd07480 287 DRGVGLGLAP 296 (297)
T ss_pred hcCCceeecC
Confidence 8999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=342.60 Aligned_cols=246 Identities=30% Similarity=0.424 Sum_probs=189.3
Q ss_pred CCCEEEEEccCCCCCCCCccCCCCCCC-CCcccee-----eEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCC
Q 005334 90 SEVIVGVLDTGVWPEIKSFDDTGMGPV-PRGWKGV-----WYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGA 163 (701)
Q Consensus 90 ~gVvVgVIDtGId~~Hp~f~~~~~~~~-~~~~~g~-----~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~ 163 (701)
+||+|||||||||++||+|.++..... ...+.+. .|......++......++.|..+|||||||||+|+.....
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~va~ii~~~~~~~~ 81 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVGNNGI 81 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcccCCCcccccCCCCCCCCCCCcHHHHHHHHHCcCCCCC
Confidence 689999999999999999998632110 0000000 0100000012222344567889999999999999854332
Q ss_pred cccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCE
Q 005334 164 SLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIF 242 (701)
Q Consensus 164 ~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~ 242 (701)
.+.|+||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||.... ...+..++.++.++|++
T Consensus 82 --------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~---~~~~~~~~~~~~~~g~i 150 (259)
T cd07473 82 --------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP---SQALRDAIARAIDAGIL 150 (259)
T ss_pred --------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHHHHHHHHHHhCCCE
Confidence 248999999999999998776 888899999999999999999999998533 56677778899999999
Q ss_pred EEEecCCCCCCC---Ccccc--CCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcC
Q 005334 243 VSCSAGNGGPYA---NSISN--VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSS 317 (701)
Q Consensus 243 vV~AAGN~G~~~---~~~~~--~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (701)
||+||||+|... ..++. ..|++|+||+.+.
T Consensus 151 vV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~--------------------------------------------- 185 (259)
T cd07473 151 FVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS--------------------------------------------- 185 (259)
T ss_pred EEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC---------------------------------------------
Confidence 999999998762 23333 3578888887321
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHh
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecccc
Q 005334 398 SDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTS 477 (701)
Q Consensus 398 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 477 (701)
.+.++.||++||. +||+.|||.++++..... .|..++|||
T Consensus 186 --------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~~-------------~~~~~~GTS 225 (259)
T cd07473 186 --------------------NDALASFSNYGKK-------TVDLAAPGVDILSTSPGG-------------GYGYMSGTS 225 (259)
T ss_pred --------------------CCCcCcccCCCCC-------CcEEEeccCCeEeccCCC-------------cEEEeccHh
Confidence 1245568999985 459999999999966543 789999999
Q ss_pred chhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 478 MSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 478 mAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
||||+|||++|||+|++|.+++++||++|++||+
T Consensus 226 ~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 226 MATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=347.93 Aligned_cols=244 Identities=22% Similarity=0.229 Sum_probs=176.4
Q ss_pred CCCCCCC-CCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 80 ETLFPTS-EVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 80 ~~~~~~~-~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
..+|+.. ..|+||+|+|||+|||.+||+|.++.... .....+.|..+|||||||||||.
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~--------------------~~~~~~~d~~gHGT~VAGiIaa~ 64 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL--------------------ISGLTDQADSDHGTAVLGIIVAK 64 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc--------------------cCCCCCCCCCCCcchhheeeeee
Confidence 4578774 45899999999999999999998763221 00112568899999999999986
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH----cCCeEEEEeccCCCCC------CccCH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE----DGVNVMSMSIGGGLTD------YYRDT 228 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~----~gvdVInlSlG~~~~~------~~~d~ 228 (701)
.. .+| +.||||+|+|+.+|++. .++++++|.+|++ .++.+||||||..... .+...
T Consensus 65 ~n----~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~ 130 (277)
T cd04843 65 DN----GIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQA 130 (277)
T ss_pred cC----CCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCcccCcchhhHH
Confidence 31 122 38999999999999975 3456677777776 3577899999986421 12334
Q ss_pred HHHHHHHHHHCCCEEEEecCCCCCCCCccc-------------cCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeec
Q 005334 229 VAIGAFTAMAQGIFVSCSAGNGGPYANSIS-------------NVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYS 295 (701)
Q Consensus 229 i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~ 295 (701)
+..++.+|.++|+++|+||||++....... ...|++|+|||...+
T Consensus 131 ~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~---------------------- 188 (277)
T cd04843 131 NFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST---------------------- 188 (277)
T ss_pred HHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC----------------------
Confidence 455677888999999999999986421110 012456666653110
Q ss_pred CCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccccc
Q 005334 296 RRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVAD 375 (701)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 375 (701)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCC
Q 005334 376 AQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGA 455 (701)
Q Consensus 376 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 455 (701)
....++.||++|+.. ||.|||++|+++....
T Consensus 189 -----------------------------------------~~~~~~~fSn~G~~v--------di~APG~~i~s~~~~~ 219 (277)
T cd04843 189 -----------------------------------------TGHTRLAFSNYGSRV--------DVYGWGENVTTTGYGD 219 (277)
T ss_pred -----------------------------------------CCCccccccCCCCcc--------ceEcCCCCeEecCCCC
Confidence 001378899999976 9999999999998764
Q ss_pred CCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 005334 456 VGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKA----A-HPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 456 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~~sp~~Ik~~L~~TA~ 511 (701)
..... ......|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 220 ~~~~~---~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 220 LQDLG---GENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred ccccc---CCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 32100 11112357899999999999999999975 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=331.02 Aligned_cols=225 Identities=35% Similarity=0.483 Sum_probs=185.2
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCC-CCCCCCCCChhHHHHhhcccccCCCcccccC
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAES-KSPRDDDGHGTHTSTTAAGSVVNGASLFGFA 169 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~ 169 (701)
||+|||||+||+++||+|.+.... .| +..... ....|..+|||||||+|+|.....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~~----~~------------~~~~~~~~~~~~~~~HGT~vA~ii~~~~~~~------- 57 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIVG----GA------------NFTGDDNNDYQDGNGHGTHVAGIIAALDNGV------- 57 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccccC----cc------------cccCCCCCCCCCCCCCHHHHHHHHhcccCCC-------
Confidence 799999999999999999875321 11 000111 346678899999999999975332
Q ss_pred CCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEEEecC
Q 005334 170 SGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAG 248 (701)
Q Consensus 170 ~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAG 248 (701)
.+.|+||+|+|+.+|+++..+ ....+++++++++++.|++|||||||... ....+..++..+.++|+++|+|||
T Consensus 58 --~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~~~~~~~~~a~~~giliv~aaG 132 (229)
T cd07477 58 --GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSPALREAIKKAYAAGILVVAAAG 132 (229)
T ss_pred --ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCHHHHHHHHHHHHCCCEEEEecC
Confidence 248999999999999998776 66789999999999999999999999753 234556666788899999999999
Q ss_pred CCCCCCCcc--ccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCC
Q 005334 249 NGGPYANSI--SNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSL 326 (701)
Q Consensus 249 N~G~~~~~~--~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~ 326 (701)
|++...... +...|++|+||+.+.
T Consensus 133 N~~~~~~~~~~pa~~~~vi~Vga~~~------------------------------------------------------ 158 (229)
T cd07477 133 NSGNGDSSYDYPAKYPSVIAVGAVDS------------------------------------------------------ 158 (229)
T ss_pred CCCCCCCCccCCCCCCCEEEEEeecC------------------------------------------------------
Confidence 999776654 778899999998421
Q ss_pred CCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEE
Q 005334 327 IPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATI 406 (701)
Q Consensus 327 ~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 406 (701)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHH
Q 005334 407 ISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGL 486 (701)
Q Consensus 407 ~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 486 (701)
.+.+..||++|+.. |+.|||.+|+++++.. .|..++|||||||+|||+
T Consensus 159 -----------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~ 206 (229)
T cd07477 159 -----------NNNRASFSSTGPEV--------ELAAPGVDILSTYPNN-------------DYAYLSGTSMATPHVAGV 206 (229)
T ss_pred -----------CCCcCCccCCCCCc--------eEEeCCCCeEEecCCC-------------CEEEEccHHHHHHHHHHH
Confidence 11455789999865 9999999999987764 688999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhc
Q 005334 487 AALLKAAHPEWSPSAIKSALMTT 509 (701)
Q Consensus 487 aALl~~~~P~~sp~~Ik~~L~~T 509 (701)
+|||+|++|++++.+||++|++|
T Consensus 207 ~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 207 AALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=348.03 Aligned_cols=272 Identities=32% Similarity=0.472 Sum_probs=204.5
Q ss_pred EEEEEccCCCCCCCCcc-CCCCCCCCCcccee--eEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccC
Q 005334 93 IVGVLDTGVWPEIKSFD-DTGMGPVPRGWKGV--WYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFA 169 (701)
Q Consensus 93 vVgVIDtGId~~Hp~f~-~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~ 169 (701)
+|||||+|||++||+|. .+- . |... .|..... ........|..+|||||||+|+|.. . .+.
T Consensus 1 ~V~viDtGid~~h~~~~~~~~-~-----~~~~~~~~~~~~~----~~~~~~~~~~~~HGT~va~ii~~~~-~-~~~---- 64 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF-I-----WSKVPGGYNFVDG----NPNPSPSDDDNGHGTHVAGIIAGNG-G-NNG---- 64 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE-E-----EEEEEEEEETTTT----BSTTTSSSTSSSHHHHHHHHHHHTT-S-SSS----
T ss_pred CEEEEcCCcCCCChhHccCCc-c-----cccccceeeccCC----CCCcCccccCCCccchhhhhccccc-c-ccc----
Confidence 69999999999999998 431 1 1110 1111111 1223456778899999999999996 2 222
Q ss_pred CCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHH-HcCCeEEEEeccCCC--C-CCccCHHHHHHHHHHHCCCEEEE
Q 005334 170 SGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAI-EDGVNVMSMSIGGGL--T-DYYRDTVAIGAFTAMAQGIFVSC 245 (701)
Q Consensus 170 ~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai-~~gvdVInlSlG~~~--~-~~~~d~i~~a~~~a~~~Gi~vV~ 245 (701)
....|+||+|+|+.+|++...+....+++++|++++ +++++|||||||... . ....+.+..+...+.++|+++|+
T Consensus 65 -~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~ 143 (282)
T PF00082_consen 65 -PGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAEKKGILIVF 143 (282)
T ss_dssp -SSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHHHTTEEEEE
T ss_pred -cccccccccccccccccccccccccccccchhhhhhhccCCccccccccccccccccccccccccccccccccCcceee
Confidence 223899999999999998777677888999999999 899999999998832 1 22334455666688899999999
Q ss_pred ecCCCCCCCCc---cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccC
Q 005334 246 SAGNGGPYANS---ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCM 322 (701)
Q Consensus 246 AAGN~G~~~~~---~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~ 322 (701)
||||+|+.... .+...+++|+||+.+
T Consensus 144 aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~--------------------------------------------------- 172 (282)
T PF00082_consen 144 AAGNNGPNDDRNISFPASSPNVITVGAVD--------------------------------------------------- 172 (282)
T ss_dssp E--SSSSBTTBTGEBTTTSTTSEEEEEEE---------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc---------------------------------------------------
Confidence 99999877643 445567888888732
Q ss_pred CCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCC
Q 005334 323 TGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGP 402 (701)
Q Consensus 323 ~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 402 (701)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhh
Q 005334 403 MATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPH 482 (701)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 482 (701)
....++.||++|+... ++++||||+|||.+|++.++.... ..|..++|||||||+
T Consensus 173 --------------~~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~----------~~~~~~~GTS~Aap~ 227 (282)
T PF00082_consen 173 --------------NNGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR----------GSYTSFSGTSFAAPV 227 (282)
T ss_dssp --------------TTSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES----------EEEEEEESHHHHHHH
T ss_pred --------------cccccccccccccccc-cccccccccccccccccccccccc----------ccccccCcCCchHHH
Confidence 0114578999976543 689999999999999888866421 258899999999999
Q ss_pred HhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 483 VSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 483 VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
|||++|||+|++|+|++.+||.+|++||++..... .......||||+||+.+|++
T Consensus 228 vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 228 VAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChhCHHHHhC
Confidence 99999999999999999999999999999986211 12233488999999999974
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=340.95 Aligned_cols=282 Identities=30% Similarity=0.426 Sum_probs=229.1
Q ss_pred ceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceeccCC-----CCCCcccCCCCCCC-------CCC----CCCCCCCCEE
Q 005334 31 NVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYELHT-----TRTPEFLGLGKSET-------LFP----TSEVQSEVIV 94 (701)
Q Consensus 31 ~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~gl~~~~~-------~~~----~~~~G~gVvV 94 (701)
.+|+|..-..+.+-+..+++.|-++.++++...+... .+...-|||.++.. -|- ....|+||..
T Consensus 144 ~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvta 223 (501)
T KOG1153|consen 144 RVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTA 223 (501)
T ss_pred chhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEE
Confidence 3888999999999999999999999999988776543 23333455544211 111 2337999999
Q ss_pred EEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCCcee
Q 005334 95 GVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTAR 174 (701)
Q Consensus 95 gVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~ 174 (701)
.|+||||+.+||+|.++. .| |.| + .......|++||||||||+|+|.. .
T Consensus 224 Yv~DTGVni~H~dFegRa------~w-Ga~-------i---~~~~~~~D~nGHGTH~AG~I~sKt--------------~ 272 (501)
T KOG1153|consen 224 YVLDTGVNIEHPDFEGRA------IW-GAT-------I---PPKDGDEDCNGHGTHVAGLIGSKT--------------F 272 (501)
T ss_pred EEecccccccccccccce------ec-ccc-------c---CCCCcccccCCCcceeeeeeeccc--------------c
Confidence 999999999999999872 33 221 0 111235789999999999999884 8
Q ss_pred eecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc---------CCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEE
Q 005334 175 GMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED---------GVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVS 244 (701)
Q Consensus 175 GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~---------gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV 244 (701)
|+|.+++|+++||++++| +..+++++++|++++. +..|.|||+|+.. +-++..|+..|.+.||+++
T Consensus 273 GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~----S~aLn~AV~~A~~~Gi~fa 348 (501)
T KOG1153|consen 273 GVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR----SAALNMAVNAASERGIHFA 348 (501)
T ss_pred ccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc----cHHHHHHHHHHhhcCeEEE
Confidence 999999999999999998 8999999999999986 4789999999853 4567888889999999999
Q ss_pred EecCCCCCCCCc-cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCC
Q 005334 245 CSAGNGGPYANS-ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMT 323 (701)
Q Consensus 245 ~AAGN~G~~~~~-~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~ 323 (701)
+||||+-.+.+. .+..+..+|||||++.
T Consensus 349 ~AAGNe~eDAC~~SPass~~aITVGAst~--------------------------------------------------- 377 (501)
T KOG1153|consen 349 VAAGNEHEDACNSSPASSKKAITVGASTK--------------------------------------------------- 377 (501)
T ss_pred EcCCCcchhhhccCcccccccEEeccccc---------------------------------------------------
Confidence 999999877654 4457889999999642
Q ss_pred CCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCe
Q 005334 324 GSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPM 403 (701)
Q Consensus 324 ~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 403 (701)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhH
Q 005334 404 ATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHV 483 (701)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 483 (701)
.+.+|.||+||++. ||-|||++|+|.|.+... .-.++||||||+|||
T Consensus 378 --------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~ilSGTSMasPhv 424 (501)
T KOG1153|consen 378 --------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAILSGTSMASPHV 424 (501)
T ss_pred --------------ccchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chheeecccccCcch
Confidence 12789999999999 999999999999998632 567999999999999
Q ss_pred hHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 005334 484 SGLAALLKAAHPE---------WSPSAIKSALMTTAY 511 (701)
Q Consensus 484 AG~aALl~~~~P~---------~sp~~Ik~~L~~TA~ 511 (701)
||++|..++++|. .||.++|..++.-..
T Consensus 425 aG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 425 AGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999999999883 388888888877554
|
|
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=341.41 Aligned_cols=149 Identities=26% Similarity=0.317 Sum_probs=106.6
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCCCCCcc-ceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccC
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGPVPRGW-KGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFA 169 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~ 169 (701)
.|+|||||||||++||+|.+...... ..+ ....+... ............|..||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~d~~gHGT~vAgiia~~~~--------- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYS-KNLVPKGGYDGK--EAGETGDINDIVDKLGHGTAVAGQIAANGN--------- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccccc-cccccCCCcCCc--cccccCCCCcCCCCCCcHhHHHHHHhcCCC---------
Confidence 48999999999999999996422100 000 00000000 001111123456789999999999998631
Q ss_pred CCceeeecCCCeEEEEEeecCCCC-ChHHHHHHHHHHHHcCCeEEEEeccCCCCCC--------ccCHHHHHHHHHHHCC
Q 005334 170 SGTARGMAAQARVATYKVCWLAGC-FGSDILAGMDKAIEDGVNVMSMSIGGGLTDY--------YRDTVAIGAFTAMAQG 240 (701)
Q Consensus 170 ~g~~~GvAP~A~l~~~kv~~~~g~-~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~--------~~d~i~~a~~~a~~~G 240 (701)
..||||+|+|+.+|+++..+. ...+++++|++|++++++|||||||...... ....+..++..+.++|
T Consensus 69 ---~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g 145 (294)
T cd07482 69 ---IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKG 145 (294)
T ss_pred ---CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHHCC
Confidence 159999999999999987764 8889999999999999999999999754221 1234556666788999
Q ss_pred CEEEEecCCCCCCC
Q 005334 241 IFVSCSAGNGGPYA 254 (701)
Q Consensus 241 i~vV~AAGN~G~~~ 254 (701)
++||+||||+|...
T Consensus 146 ~lvv~AAGN~g~~~ 159 (294)
T cd07482 146 SIVVAAAGNDGLDV 159 (294)
T ss_pred CEEEEeCCCCCccc
Confidence 99999999998653
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=331.84 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=117.3
Q ss_pred CCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCccccc
Q 005334 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGF 168 (701)
Q Consensus 89 G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~ 168 (701)
+++|+|||||||||++||+|.++... +..+..... +.........|..||||||||||+
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~~-------~~~~~~~~~--~~~~~~~~~~d~~gHGT~vAgiI~------------ 60 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKIIG-------GKSFSPYEG--DGNKVSPYYVSADGHGTAMARMIC------------ 60 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccccc-------CCCCCCCCC--CcccCCCCCCCCCCcHHHHHHHHH------------
Confidence 78999999999999999999875221 111111000 000011123578899999999994
Q ss_pred CCCceeeecCCCeEEEEEeecCCC-------CChHHHHHHHHHHHHcCCeEEEEeccCCCCCC---ccCHHHHHHHHHHH
Q 005334 169 ASGTARGMAAQARVATYKVCWLAG-------CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDY---YRDTVAIGAFTAMA 238 (701)
Q Consensus 169 ~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~---~~d~i~~a~~~a~~ 238 (701)
|+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||...... ....+..++.+|.+
T Consensus 61 ------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~ 134 (247)
T cd07491 61 ------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALD 134 (247)
T ss_pred ------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHHh
Confidence 689999999999997653 45678999999999999999999999864321 25667888889999
Q ss_pred CCCEEEEecCCCCCCCC-c--cccCCCceEEecCC
Q 005334 239 QGIFVSCSAGNGGPYAN-S--ISNVAPWITTVGAG 270 (701)
Q Consensus 239 ~Gi~vV~AAGN~G~~~~-~--~~~~ap~vitVgAs 270 (701)
+|++||+||||+|.... . .+...|++|+|||.
T Consensus 135 ~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 135 RGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred CCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 99999999999997654 3 34567899999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=340.84 Aligned_cols=248 Identities=21% Similarity=0.198 Sum_probs=179.5
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCC--CCCCChhHHHHhhc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPR--DDDGHGTHTSTTAA 156 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--D~~gHGThvAgiaA 156 (701)
...+|+.+++|+||+|+|||||||++||+|.++.... ..|. ... ......+. |..||||||||||+
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~--~~~~-----~~~-----~~~~~~~~~~~~~gHGT~vAgiia 95 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPE--ASYD-----FND-----NDPDPTPRYDDDNSHGTRCAGEIA 95 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhccccc--cccc-----ccC-----CCCCCCCccccccccCcceeeEEE
Confidence 3569999999999999999999999999998763221 1111 100 01111222 78899999999999
Q ss_pred ccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCCCCC----CccCHHHHH
Q 005334 157 GSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTD----YYRDTVAIG 232 (701)
Q Consensus 157 G~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~----~~~d~i~~a 232 (701)
|+..... ...||||+|+|+.+|++... .....+..++.++.+ .++|||||||..... ........+
T Consensus 96 g~~~~~~--------~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a 165 (297)
T cd04059 96 AVGNNGI--------CGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRA 165 (297)
T ss_pred eecCCCc--------ccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCCCCccCCCcHHHHHH
Confidence 9853221 23899999999999998754 334455566655544 469999999976422 122334444
Q ss_pred HHHHHH-----CCCEEEEecCCCCCCCCc----cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCce
Q 005334 233 AFTAMA-----QGIFVSCSAGNGGPYANS----ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSM 303 (701)
Q Consensus 233 ~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~ 303 (701)
+.++.+ +|++||+||||+|..... .....|++|+|||.+.
T Consensus 166 ~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~------------------------------- 214 (297)
T cd04059 166 LENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA------------------------------- 214 (297)
T ss_pred HHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC-------------------------------
Confidence 445554 699999999999973221 1235678888887321
Q ss_pred eeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEE
Q 005334 304 VPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSAN 383 (701)
Q Consensus 304 ~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~ 383 (701)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCc-------EEecccCCC
Q 005334 384 VGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVN-------ILAGWTGAV 456 (701)
Q Consensus 384 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~-------I~sa~~~~~ 456 (701)
.+.++.||++|+.. ++.|||.. |+++....
T Consensus 215 ----------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~~- 251 (297)
T cd04059 215 ----------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLGG- 251 (297)
T ss_pred ----------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCCC-
Confidence 12567899999987 89999987 66654441
Q ss_pred CCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 457 GPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 457 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
....|..++|||||||+|||++|||+|+||+|++.|||.+|++||+
T Consensus 252 ---------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 252 ---------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred ---------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 0126788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=320.79 Aligned_cols=221 Identities=23% Similarity=0.261 Sum_probs=173.3
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCC
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFAS 170 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~ 170 (701)
||+|||||||||++||+|.+..... .. +. .. ..........|..||||||||||++.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~-----~~--~~--~~--~~~~~~~~~~d~~gHGT~vAgiia~~------------ 57 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDG-----EV--TI--DL--EIIVVSAEGGDKDGHGTACAGIIKKY------------ 57 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccccc-----cc--cc--cc--ccccCCCCCCCCCCcHHHHHHHHHcc------------
Confidence 7999999999999999999763221 00 00 00 01122334568899999999999753
Q ss_pred CceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEEEecCC
Q 005334 171 GTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGN 249 (701)
Q Consensus 171 g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN 249 (701)
+|+++|+.+|+++..+ +...++++||+|++++|++|||||||..... ....+..++.++.++|+++|+||||
T Consensus 58 ------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~~~~a~~~g~l~V~aagN 130 (222)
T cd07492 58 ------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKELLEYAYKAGGIIVAAAPN 130 (222)
T ss_pred ------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHHHHHHHHCCCEEEEECCC
Confidence 5999999999998776 7888999999999999999999999986432 2345667777888999999999999
Q ss_pred CCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCC
Q 005334 250 GGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPA 329 (701)
Q Consensus 250 ~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~ 329 (701)
++..... +...|.+|+|++...++
T Consensus 131 ~~~~~~~-Pa~~~~vi~V~~~~~~~------------------------------------------------------- 154 (222)
T cd07492 131 NNDIGTP-PASFPNVIGVKSDTADD------------------------------------------------------- 154 (222)
T ss_pred CCCCCCC-CccCCceEEEEecCCCC-------------------------------------------------------
Confidence 9865433 56678888888732110
Q ss_pred CccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEec
Q 005334 330 KVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISR 409 (701)
Q Consensus 330 ~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 409 (701)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHH
Q 005334 410 GTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAAL 489 (701)
Q Consensus 410 ~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 489 (701)
.. +.+++ ++|+.|||.+|+++++.. .|..++|||||||+|||++||
T Consensus 155 ----------~~---~~~~~--------~~~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aap~vaG~~Al 200 (222)
T cd07492 155 ----------PK---SFWYI--------YVEFSADGVDIIAPAPHG-------------RYLTVSGNSFAAPHVTGMVAL 200 (222)
T ss_pred ----------Cc---ccccC--------CceEEeCCCCeEeecCCC-------------CEEEeccHHHHHHHHHHHHHH
Confidence 00 11122 449999999999987763 789999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHhccc
Q 005334 490 LKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 490 l~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
|+|++|+|+++|||++|++||+
T Consensus 201 l~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 201 LLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHhCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=326.42 Aligned_cols=242 Identities=28% Similarity=0.297 Sum_probs=185.5
Q ss_pred CCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccc
Q 005334 88 VQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFG 167 (701)
Q Consensus 88 ~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G 167 (701)
+|+||+|+|||+||+++||+|.+.........+ ..........|..+|||||||+|+|+...
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~HGT~vagiiag~~~~------ 62 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYVA------------VNDAGYASNGDGDSHGTHVAGVIAAARDG------ 62 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccccc------------cccccCCCCCCCCChHHHHHHHHhcCcCC------
Confidence 599999999999999999999986432111000 00001234567889999999999998543
Q ss_pred cCCCceeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHHcCCeEEEEeccCCCCC------------CccCHHHHHH
Q 005334 168 FASGTARGMAAQARVATYKVCWLAG--CFGSDILAGMDKAIEDGVNVMSMSIGGGLTD------------YYRDTVAIGA 233 (701)
Q Consensus 168 ~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~------------~~~d~i~~a~ 233 (701)
....|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||..... .....+....
T Consensus 63 ---~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (267)
T cd04848 63 ---GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAAL 139 (267)
T ss_pred ---CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccccchHHHHHH
Confidence 2348999999999999998764 6667889999999999999999999986522 2455666777
Q ss_pred HHHHHCCCEEEEecCCCCCCCCcc---------ccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCcee
Q 005334 234 FTAMAQGIFVSCSAGNGGPYANSI---------SNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMV 304 (701)
Q Consensus 234 ~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~ 304 (701)
..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 140 ~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------------------------------ 189 (267)
T cd04848 140 ARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------------------------------ 189 (267)
T ss_pred HHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC------------------------------
Confidence 788899999999999998654322 23456778887743211
Q ss_pred eEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEe
Q 005334 305 PIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANV 384 (701)
Q Consensus 305 ~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 384 (701)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceec--ccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCC
Q 005334 385 GEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAA--FSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLE 462 (701)
Q Consensus 385 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 462 (701)
.... ||++|+.. -.++++|||.+|+++.+...
T Consensus 190 -----------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~~------ 223 (267)
T cd04848 190 -----------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDGG------ 223 (267)
T ss_pred -----------------------------------Ccccccccccchhh-----hhheeecCcCceeecccCCC------
Confidence 1222 47777654 24479999999999876311
Q ss_pred CCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 463 SDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 463 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
..|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 224 -----~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 224 -----NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred -----CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 26889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=326.58 Aligned_cols=237 Identities=24% Similarity=0.281 Sum_probs=179.0
Q ss_pred CCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCC-C--CChHHHHHHHHHHHHcCCeEEEEeccCCC
Q 005334 145 DGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLA-G--CFGSDILAGMDKAIEDGVNVMSMSIGGGL 221 (701)
Q Consensus 145 ~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~ai~~gvdVInlSlG~~~ 221 (701)
.-|||||||||+|+..... ...|+||+|+|+++++.+.. | -+...+.+|+..+++..+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 4599999999999975542 24799999999999997643 2 45567899999999999999999999765
Q ss_pred -CCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCcccc---CCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCC
Q 005334 222 -TDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISN---VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRR 297 (701)
Q Consensus 222 -~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~ 297 (701)
.+.....++..-..+.++|+++|+||||+||...+++. ..-.+|.|||.-.. ..
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp----------------------~m 439 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSP----------------------GM 439 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCH----------------------HH
Confidence 34445556655555568999999999999998877664 33467777772100 00
Q ss_pred CCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccccccc
Q 005334 298 PLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQ 377 (701)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 377 (701)
+ ...|.+.
T Consensus 440 m--~a~y~~~---------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 440 M--QAEYSVR---------------------------------------------------------------------- 447 (1304)
T ss_pred H--Hhhhhhh----------------------------------------------------------------------
Confidence 0 0000000
Q ss_pred ccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCC
Q 005334 378 LLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVG 457 (701)
Q Consensus 378 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~ 457 (701)
.+-......+|||||+. ||-+--.|.|||+.|-+--.-.
T Consensus 448 -------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~t-- 486 (1304)
T KOG1114|consen 448 -------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYT-- 486 (1304)
T ss_pred -------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCchhh--
Confidence 01123577899999999 7889999999999886532111
Q ss_pred CCCCCCCcccceeEeeccccchhhhHhHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCC
Q 005334 458 PTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFD 533 (701)
Q Consensus 458 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 533 (701)
...-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||++++.. .+|.
T Consensus 487 ---------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------------d~fa 544 (1304)
T KOG1114|consen 487 ---------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------------DSFA 544 (1304)
T ss_pred ---------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------chhc
Confidence 12457899999999999999999865 477899999999999999998632 4689
Q ss_pred CCccccCccccCC
Q 005334 534 FGAGHVDPVAALD 546 (701)
Q Consensus 534 ~G~G~vn~~~A~~ 546 (701)
+|.|+|++.+|.+
T Consensus 545 qG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 545 QGQGMLQVDKAYE 557 (1304)
T ss_pred cCcceeehhHHHH
Confidence 9999999999986
|
|
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=306.37 Aligned_cols=337 Identities=25% Similarity=0.384 Sum_probs=249.3
Q ss_pred cHHHHHHHhhcccc-c------cccEEEEecceeeEEEEEeC-----HHHHHHhhcCCCeEEEEeCceeccCC-------
Q 005334 7 DHFEWYDSSLKSVS-A------SAAMLYTYKNVIHGFSTRLT-----AKEAESLQKQPGIVSVLPEVRYELHT------- 67 (701)
Q Consensus 7 ~h~~~~~~~l~~~~-~------~~~~~~~y~~~~ng~s~~l~-----~~~~~~L~~~p~V~~V~~~~~~~~~~------- 67 (701)
.|++++++-|.... . ....--.|-.-|.-+-++-. .-+++.|..+|.|+.|.|.+.+....
T Consensus 64 ~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~ 143 (1033)
T KOG4266|consen 64 DRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGLSYPDGKK 143 (1033)
T ss_pred HHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhcccccccCC
Confidence 47788888776322 1 12222334444555555433 23578999999999999987654310
Q ss_pred -----CCCCcc------------------cC--C----------CCCCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCC
Q 005334 68 -----TRTPEF------------------LG--L----------GKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTG 112 (701)
Q Consensus 68 -----~~s~~~------------------~g--l----------~~~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~ 112 (701)
+.+-.+ ++ | -++.-+|+.|++|++|+|||.|||+.-+||.|+..-
T Consensus 144 ~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvK 223 (1033)
T KOG4266|consen 144 RPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNVK 223 (1033)
T ss_pred CCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCCccccchh
Confidence 000000 00 0 002449999999999999999999999999998541
Q ss_pred CCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC
Q 005334 113 MGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG 192 (701)
Q Consensus 113 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g 192 (701)
....|. . .....|..||||.|||+|||.. .-.|.||++.|+++|||-+.-
T Consensus 224 ---ERTNWT--------------N-E~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~q 273 (1033)
T KOG4266|consen 224 ---ERTNWT--------------N-EDTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQ 273 (1033)
T ss_pred ---hhcCCc--------------C-ccccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccce
Confidence 011231 1 1245678899999999999884 137999999999999997765
Q ss_pred -CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCccccCCC--ceEEecC
Q 005334 193 -CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAP--WITTVGA 269 (701)
Q Consensus 193 -~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap--~vitVgA 269 (701)
.+.+.+++|+.+|+...+||+|+|+|++ ++.+.++-.-+.....++|++|.|+||+||-.++..|.+. .++.||.
T Consensus 274 VSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG 351 (1033)
T KOG4266|consen 274 VSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG 351 (1033)
T ss_pred eehhhHHHHHHHHHHhhhcceEeeccCCc--ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc
Confidence 8899999999999999999999999995 3445566666667888999999999999998887766432 2333332
Q ss_pred CccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhh
Q 005334 270 GTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKG 349 (701)
Q Consensus 270 st~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~ 349 (701)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCC
Q 005334 350 VEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGP 429 (701)
Q Consensus 350 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP 429 (701)
.+..+.+|.|||||-
T Consensus 352 -----------------------------------------------------------------IdfdD~IA~FSSRGM 366 (1033)
T KOG4266|consen 352 -----------------------------------------------------------------IDFDDHIASFSSRGM 366 (1033)
T ss_pred -----------------------------------------------------------------ccccchhhhhccCCc
Confidence 123458999999997
Q ss_pred CCC----CCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHh----hCCCCCHHH
Q 005334 430 NPI----TPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPSA 501 (701)
Q Consensus 430 ~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~ 501 (701)
+.. .-||+||||++-|.+|....... +...+||||.|+|.|||+++||.+ +.--+.|+.
T Consensus 367 tTWELP~GYGRmkpDiVtYG~~v~GS~v~~-------------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPAS 433 (1033)
T KOG4266|consen 367 TTWELPHGYGRMKPDIVTYGRDVMGSKVST-------------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPAS 433 (1033)
T ss_pred ceeecCCcccccCCceEeeccccccCcccc-------------cchhccCCcccchhhhceeeeEeeeheehhhccCHHH
Confidence 653 35999999999999988764443 677899999999999999999976 234468999
Q ss_pred HHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 502 IKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 502 Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
+|.+|+..|.++.. ..-|.||+|++|+.++.+
T Consensus 434 mKQaLiegA~kLpg-------------~NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 434 MKQALIEGAAKLPG-------------PNMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred HHHHHHhHHhhCCC-------------CchhhccCcchhHHHHHH
Confidence 99999999998853 234799999999998876
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=281.47 Aligned_cols=194 Identities=21% Similarity=0.152 Sum_probs=140.7
Q ss_pred CCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHH--HHcCCeEEEEec
Q 005334 140 SPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKA--IEDGVNVMSMSI 217 (701)
Q Consensus 140 ~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--i~~gvdVInlSl 217 (701)
...|.+||||||||||||. .|++|+++|+..++.. .....+..+++|+ .+.+++||||||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCC
Confidence 3568999999999999997 4667999998765522 1233466778888 567999999999
Q ss_pred cCCCCCC------ccCHHHHHHHHHHHC-CCEEEEecCCCCCCC-----CccccCCCceEEecCCccCceeeeEEEcCCC
Q 005334 218 GGGLTDY------YRDTVAIGAFTAMAQ-GIFVSCSAGNGGPYA-----NSISNVAPWITTVGAGTLDRNFPTYVSLGNG 285 (701)
Q Consensus 218 G~~~~~~------~~d~i~~a~~~a~~~-Gi~vV~AAGN~G~~~-----~~~~~~ap~vitVgAst~~~~~~~~~~l~~g 285 (701)
|...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||......
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 9864321 223456666666666 999999999999743 223456788999998432110
Q ss_pred cEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeec
Q 005334 286 KSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNT 365 (701)
Q Consensus 286 ~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 365 (701)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCC--CCCCCCCCCCCCcEEe
Q 005334 366 DSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSR--GPNPITPEILKPDLIA 443 (701)
Q Consensus 366 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~--GP~~~~~~~lKPDI~A 443 (701)
....+.||++ +|+. .+..||||+|
T Consensus 164 ----------------------------------------------------~~~~s~~sn~~~~~~~--~~~~~~di~A 189 (247)
T cd07488 164 ----------------------------------------------------RFFASDVSNAGSEINS--YGRRKVLIVA 189 (247)
T ss_pred ----------------------------------------------------cceecccccccCCCCC--CCCceeEEEE
Confidence 0022345554 4443 5788999999
Q ss_pred cCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCC------HHHHHHHHHhcc
Q 005334 444 PGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWS------PSAIKSALMTTA 510 (701)
Q Consensus 444 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s------p~~Ik~~L~~TA 510 (701)
||++|++ +. ..|..++|||||||||||++|||++++|++. -.++|.+|+.|+
T Consensus 190 PG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 190 PGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred eeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 9999998 22 2688999999999999999999999987665 456777777653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-31 Score=267.70 Aligned_cols=234 Identities=35% Similarity=0.496 Sum_probs=175.2
Q ss_pred CEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCC
Q 005334 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASG 171 (701)
Q Consensus 92 VvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g 171 (701)
|+|+|||+||+++||+|...... ....+. .. ..........+..+||||||++|++......
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~~-~~~~~~-----~~----~~~~~~~~~~~~~~HGt~va~~i~~~~~~~~-------- 62 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFGG-GDGGND-----DD----DNENGPTDPDDGNGHGTHVAGIIAASANNGG-------- 62 (241)
T ss_pred CEEEEEeCCCCCCCcchhccccC-cccccc-----cc----cCcCCCCCCCCCCCcHHHHHHHHhcCCCCCC--------
Confidence 68999999999999987211000 000000 00 0001112456788999999999999854321
Q ss_pred ceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHH-HcCCeEEEEeccCCCCCCccCHHHHHHHHHHHC-CCEEEEecC
Q 005334 172 TARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAI-EDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQ-GIFVSCSAG 248 (701)
Q Consensus 172 ~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai-~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~-Gi~vV~AAG 248 (701)
..|+||+++|+.+|+....+ .....+++++++++ +.+++|||||||..... ....+...+..+.++ |+++|+|+|
T Consensus 63 -~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaG 140 (241)
T cd00306 63 -GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAG 140 (241)
T ss_pred -CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecC
Confidence 27999999999999987765 67788999999999 89999999999986443 345566666677777 999999999
Q ss_pred CCCCCCC---ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCC
Q 005334 249 NGGPYAN---SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGS 325 (701)
Q Consensus 249 N~G~~~~---~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~ 325 (701)
|.+.... ..+...|++|+||+.+.+..
T Consensus 141 N~~~~~~~~~~~p~~~~~vi~Vga~~~~~~-------------------------------------------------- 170 (241)
T cd00306 141 NDGPDGGTNIGYPAASPNVIAVGAVDRDGT-------------------------------------------------- 170 (241)
T ss_pred CCCCCCCCCccCCccCCceEEEEecCcCCC--------------------------------------------------
Confidence 9998776 46778899999998532211
Q ss_pred CCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEE
Q 005334 326 LIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMAT 405 (701)
Q Consensus 326 ~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 405 (701)
T Consensus 171 -------------------------------------------------------------------------------- 170 (241)
T cd00306 171 -------------------------------------------------------------------------------- 170 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecceeecccCCCce-ecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHh
Q 005334 406 IISRGTQLGIQPSPVV-AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVS 484 (701)
Q Consensus 406 i~~~~~~~~~~~~~~~-a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 484 (701)
. ..++++| .|||+.|||.++...... ....+..++|||||||+||
T Consensus 171 ---------------~~~~~~~~~--------~~~~~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap~va 216 (241)
T cd00306 171 ---------------PASPSSNGG--------AGVDIAAPGGDILSSPTT-----------GGGGYATLSGTSMAAPIVA 216 (241)
T ss_pred ---------------ccCCcCCCC--------CCceEEeCcCCccCcccC-----------CCCCeEeeccHHHHHHHHH
Confidence 1 1233333 467999999999875111 1137899999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhc
Q 005334 485 GLAALLKAAHPEWSPSAIKSALMTT 509 (701)
Q Consensus 485 G~aALl~~~~P~~sp~~Ik~~L~~T 509 (701)
|++|||+|++|++++.++|++|++|
T Consensus 217 G~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 217 GVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 9999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=232.73 Aligned_cols=248 Identities=33% Similarity=0.455 Sum_probs=184.6
Q ss_pred CCCCCC--CCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCC--CCCCCCCChhHHHHhh
Q 005334 80 ETLFPT--SEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESK--SPRDDDGHGTHTSTTA 155 (701)
Q Consensus 80 ~~~~~~--~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~D~~gHGThvAgia 155 (701)
...|.. +.+|+||.|+|||+||+..||+|.+..... .+...... ...|..+|||||++++
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~d~~~hGt~vag~i 193 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVAG----------------GDFVDGDPEPPFLDDNGHGTHVAGTI 193 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhcccccc----------------cccccCCCCCCCCCCCCCcceeeeee
Confidence 457777 899999999999999999999998763210 01111111 2578999999999999
Q ss_pred cccccCCCcccccCCCceeeecCCCeEEEEEeecCC-C-CChHHHHHHHHHHHHcC--CeEEEEeccCCCCCCccCHHHH
Q 005334 156 AGSVVNGASLFGFASGTARGMAAQARVATYKVCWLA-G-CFGSDILAGMDKAIEDG--VNVMSMSIGGGLTDYYRDTVAI 231 (701)
Q Consensus 156 AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~ai~~g--vdVInlSlG~~~~~~~~d~i~~ 231 (701)
++....+ .....|++|+++++.+|++... | ....+++++|+++++.+ +++||||+|..........+..
T Consensus 194 a~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~~~~~~~~~~~ 266 (508)
T COG1404 194 AAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGD 266 (508)
T ss_pred eeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCccccccHHHHH
Confidence 9842111 1124899999999999999866 5 67778899999999999 9999999998522233445556
Q ss_pred HHHHHHHCC-CEEEEecCCCCCCCCc----cccCC--CceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCcee
Q 005334 232 GAFTAMAQG-IFVSCSAGNGGPYANS----ISNVA--PWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMV 304 (701)
Q Consensus 232 a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~a--p~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~ 304 (701)
++..++..| +++|+++||.|..... .+... +.+++|+|..
T Consensus 267 a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~--------------------------------- 313 (508)
T COG1404 267 ALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD--------------------------------- 313 (508)
T ss_pred HHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC---------------------------------
Confidence 666777777 9999999999865421 11111 2344444421
Q ss_pred eEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEe
Q 005334 305 PIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANV 384 (701)
Q Consensus 305 ~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 384 (701)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEe-----cccCCCCCC
Q 005334 385 GEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILA-----GWTGAVGPT 459 (701)
Q Consensus 385 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s-----a~~~~~~~~ 459 (701)
..+.++.||++|+.. +.++.|||.+|.+ .+.+..
T Consensus 314 --------------------------------~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~~--- 352 (508)
T COG1404 314 --------------------------------LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDG--- 352 (508)
T ss_pred --------------------------------CCCccccccccCCCC------CcceeCCCccccccccceeeeCCc---
Confidence 123778899999752 2299999999998 433321
Q ss_pred CCCCCcccceeEeeccccchhhhHhHHHHHHHhhCC-CCCHHHHHHHHHhcccc
Q 005334 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHP-EWSPSAIKSALMTTAYS 512 (701)
Q Consensus 460 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~sp~~Ik~~L~~TA~~ 512 (701)
..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 353 --------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 353 --------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred --------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 2499999999999999999999999999 89999999998888874
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=181.16 Aligned_cols=101 Identities=28% Similarity=0.272 Sum_probs=81.7
Q ss_pred ceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHc---CCeEEEEeccCCCCC---CccCHHHHHHHHHHHCCCEEEE
Q 005334 172 TARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIED---GVNVMSMSIGGGLTD---YYRDTVAIGAFTAMAQGIFVSC 245 (701)
Q Consensus 172 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~---gvdVInlSlG~~~~~---~~~d~i~~a~~~a~~~Gi~vV~ 245 (701)
.+.||||+|+|+.|++++.. ..+++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35899999999999997542 45678889999887 999999999986532 2345677788889999999999
Q ss_pred ecCCCCCCCC-----------ccccCCCceEEecCCccCce
Q 005334 246 SAGNGGPYAN-----------SISNVAPWITTVGAGTLDRN 275 (701)
Q Consensus 246 AAGN~G~~~~-----------~~~~~ap~vitVgAst~~~~ 275 (701)
|+||+|.... ..+..+|||++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997653 34678999999999876544
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-18 Score=175.97 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=99.4
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCC--C--CCCChhHHHHhh
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPR--D--DDGHGTHTSTTA 155 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--D--~~gHGThvAgia 155 (701)
..+|..+++|++|.++|+|.||||-||+++.+--. ...|+... .+++..|+ | .+.|||.|||-+
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~nyna-------easydfss-----ndpfpyprytddwfnshgtrcagev 218 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSNYNA-------EASYDFSS-----NDPFPYPRYTDDWFNSHGTRCAGEV 218 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcccCc-------eeeccccc-----CCCCCCCcccchhhhccCcccccee
Confidence 45999999999999999999999999999865100 00122211 12222232 2 478999999988
Q ss_pred cccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH-cCCeEEEEeccCCCCCCc----cCHHH
Q 005334 156 AGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE-DGVNVMSMSIGGGLTDYY----RDTVA 230 (701)
Q Consensus 156 AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~-~gvdVInlSlG~~~~~~~----~d~i~ 230 (701)
++...++. .| .|||.+.++..+|+++. .+..|+++|-..-.+ ..++|.+-|||.....-. .+...
T Consensus 219 ~aardngi--cg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgktvdgprnatm 288 (629)
T KOG3526|consen 219 VAARDNGI--CG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATM 288 (629)
T ss_pred eeeccCCc--ee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHH
Confidence 87765443 23 69999999999999864 455666665322211 357899999997542221 12222
Q ss_pred HHHHHHHH-----CCCEEEEecCCCCCC
Q 005334 231 IGAFTAMA-----QGIFVSCSAGNGGPY 253 (701)
Q Consensus 231 ~a~~~a~~-----~Gi~vV~AAGN~G~~ 253 (701)
.++-+-+. .|-+.|.|.|..|.+
T Consensus 289 raiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 289 RAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred HHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 22223232 356899999988854
|
|
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=118.06 Aligned_cols=123 Identities=51% Similarity=0.805 Sum_probs=100.9
Q ss_pred EEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCC-chhhhhHHHhHcCce
Q 005334 280 VSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGN-SRVEKGVEVKDAGGV 358 (701)
Q Consensus 280 ~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~-~~~~~~~~~~~~Ga~ 358 (701)
+.|+||+++.|++++++.. ..+++++............|.+..++..+++||||+|+++.+ .+.++..+++++||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 6799999999999997553 456777644433334557899888888999999999999999 889999999999999
Q ss_pred EEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEE
Q 005334 359 GMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMAT 405 (701)
Q Consensus 359 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 405 (701)
|+|++++.............+|.+.|+..++..|++|++++.+++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999887654433334568999999999999999999998777654
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=114.74 Aligned_cols=117 Identities=29% Similarity=0.340 Sum_probs=93.4
Q ss_pred CceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccccc-cccc
Q 005334 301 GSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVAD-AQLL 379 (701)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~-~~~~ 379 (701)
....++++.+. |....+...+++|||+||+|+.|.+.+|..+++++||.|+|++|+.......... ...+
T Consensus 25 ~~~~~lv~~g~---------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 25 GKTYELVDAGL---------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CcEEEEEEccC---------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 45778888643 3344455678999999999999999999999999999999999887543222222 2568
Q ss_pred ceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCC
Q 005334 380 PSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNP 431 (701)
Q Consensus 380 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~ 431 (701)
|++.|+..+|..|++|+++ +++|.+..+.. ..+++.++.||||||..
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999999987 67777777666 56788999999999974
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.67 E-value=3e-07 Score=83.83 Aligned_cols=97 Identities=24% Similarity=0.305 Sum_probs=76.3
Q ss_pred eeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc---ccc--ccc
Q 005334 303 MVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE---LVA--DAQ 377 (701)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~--~~~ 377 (701)
.-++++... .....|.+..+...+++|||+||+|+.|.+.+|..+++++||.|+|++|+...... ... ...
T Consensus 18 ~~~lv~~~~----~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 18 TAPLVPLDP----ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred EEEEEEcCC----CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCC
Confidence 456666432 23478988888778899999999999999999999999999999999987663211 111 345
Q ss_pred ccceEEechhhHHHHHHhHhcCCCCe
Q 005334 378 LLPSANVGEKAGDAIKNYISSDPGPM 403 (701)
Q Consensus 378 ~~p~~~i~~~~g~~l~~~~~~~~~~~ 403 (701)
.+|+++|+..+|+.|++++..+.+.+
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~ 119 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLE 119 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEE
Confidence 69999999999999999998776433
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.9e-08 Score=86.32 Aligned_cols=79 Identities=27% Similarity=0.369 Sum_probs=64.5
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCC----CCccccccccccceEEechhhHHHHH
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDS----YGEELVADAQLLPSANVGEKAGDAIK 393 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~~~~p~~~i~~~~g~~l~ 393 (701)
...|....+...+++||||||+||.|.+.+|..+++++||.|+|++|... ...........+|+++|+..+|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45677777888999999999999999999999999999999999999211 12233455688999999999999999
Q ss_pred HhH
Q 005334 394 NYI 396 (701)
Q Consensus 394 ~~~ 396 (701)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-07 Score=84.54 Aligned_cols=86 Identities=23% Similarity=0.354 Sum_probs=69.6
Q ss_pred CCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccc----ccccccceEEechhhHHHH
Q 005334 317 SGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELV----ADAQLLPSANVGEKAGDAI 392 (701)
Q Consensus 317 ~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 392 (701)
....|.+..+. .+++|||+||+|+.|.+.+|..+++++||.|+|++|+........ .....+|+++++..+|..|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 34679888774 459999999999999999999999999999999998876422211 1235799999999999999
Q ss_pred HHhHhcCCCCe
Q 005334 393 KNYISSDPGPM 403 (701)
Q Consensus 393 ~~~~~~~~~~~ 403 (701)
++|+..+...+
T Consensus 105 ~~~l~~g~~v~ 115 (118)
T cd04818 105 KAALAAGGTVT 115 (118)
T ss_pred HHHHhcCCcEE
Confidence 99998776443
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.7e-08 Score=81.78 Aligned_cols=62 Identities=45% Similarity=0.770 Sum_probs=49.4
Q ss_pred cccHHHHHHHhhccc-----cccccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceeccC
Q 005334 5 FNDHFEWYDSSLKSV-----SASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYELH 66 (701)
Q Consensus 5 ~~~h~~~~~~~l~~~-----~~~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~ 66 (701)
+..|.+|+.+++.+. ....+++|+|+..||||+++++++++++|+++|+|++|+||+.+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 16 FSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred HHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 567889999876653 23789999999999999999999999999999999999999998764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-07 Score=82.84 Aligned_cols=92 Identities=21% Similarity=0.300 Sum_probs=74.1
Q ss_pred ceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc----cccccc
Q 005334 302 SMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE----LVADAQ 377 (701)
Q Consensus 302 ~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~----~~~~~~ 377 (701)
..+|++... ....|....+.+.+++|||+|++||.|+|.+|..+++++||.++|++|+...... ......
T Consensus 20 ~~~~~~~~~------~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 20 TLLPLRNLT------SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred cceeeecCC------CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 356666643 4567998888888899999999999999999999999999999999998753111 112446
Q ss_pred ccceEEechhhHHHHHHhHhcC
Q 005334 378 LLPSANVGEKAGDAIKNYISSD 399 (701)
Q Consensus 378 ~~p~~~i~~~~g~~l~~~~~~~ 399 (701)
.||+++|+..+|+.|.+.+...
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred cccEEEEeHHHHHHHHHHhccC
Confidence 7899999999999999887643
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.3e-07 Score=82.58 Aligned_cols=89 Identities=24% Similarity=0.332 Sum_probs=71.9
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCC-cc-c--c----ccccccceEEechhhH
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYG-EE-L--V----ADAQLLPSANVGEKAG 389 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~-~--~----~~~~~~p~~~i~~~~g 389 (701)
...|.+.. +..+++|||+|++||.|.|.+|..+++++||.++|++|+.... .. + . .....||+++|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 46798643 3567899999999999999999999999999999999876541 11 1 1 1235799999999999
Q ss_pred HHHHHhHhcCCCCeEEEE
Q 005334 390 DAIKNYISSDPGPMATII 407 (701)
Q Consensus 390 ~~l~~~~~~~~~~~~~i~ 407 (701)
+.|++.+..+..+++.|.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999999888776653
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.3e-07 Score=84.91 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=72.1
Q ss_pred CCCccCCCCC--CCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCc-cc---cccccccceEEechhhHH
Q 005334 317 SGNLCMTGSL--IPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGE-EL---VADAQLLPSANVGEKAGD 390 (701)
Q Consensus 317 ~~~~C~~~~~--~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~---~~~~~~~p~~~i~~~~g~ 390 (701)
....|.+... ++.++.|+|+|++||.|+|.+|..+++++||.++|++|+...+. .+ ......+|+++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 3567987776 56789999999999999999999999999999999999876221 11 122346899999999999
Q ss_pred HHHHhHhcCCCCeEE
Q 005334 391 AIKNYISSDPGPMAT 405 (701)
Q Consensus 391 ~l~~~~~~~~~~~~~ 405 (701)
.|++++..+.+.+.+
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999887665543
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.4e-07 Score=82.96 Aligned_cols=85 Identities=25% Similarity=0.324 Sum_probs=69.7
Q ss_pred CCccCCCC--CCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCc-cc-c----ccccccceEEechhhH
Q 005334 318 GNLCMTGS--LIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGE-EL-V----ADAQLLPSANVGEKAG 389 (701)
Q Consensus 318 ~~~C~~~~--~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~-~----~~~~~~p~~~i~~~~g 389 (701)
...|..+. +...+++|||+||+++.|.+.+|..+++++||.|+|++++..... .. . .....+|++.|+..+|
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 45687776 677889999999999999999999999999999999998876321 11 1 1346799999999999
Q ss_pred HHHHHhHhcCCCC
Q 005334 390 DAIKNYISSDPGP 402 (701)
Q Consensus 390 ~~l~~~~~~~~~~ 402 (701)
..|++|+.++.+.
T Consensus 110 ~~l~~~~~~~~~v 122 (126)
T cd00538 110 EALLSLLEAGKTV 122 (126)
T ss_pred HHHHHHHhcCCce
Confidence 9999999876543
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=8e-07 Score=81.29 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=67.5
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCC-----ccc--c-----ccccccceEEec
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYG-----EEL--V-----ADAQLLPSANVG 385 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~~--~-----~~~~~~p~~~i~ 385 (701)
...|.+... +..++|||+|++||.|+|.+|..+++++||.++|++|+.... ..+ . .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467976543 557899999999999999999999999999999999865432 111 1 124579999999
Q ss_pred hhhHHHHHHhHhcCCCCe
Q 005334 386 EKAGDAIKNYISSDPGPM 403 (701)
Q Consensus 386 ~~~g~~l~~~~~~~~~~~ 403 (701)
..+|+.|++++..+...+
T Consensus 106 ~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHHHhCCceE
Confidence 999999999998765443
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-06 Score=78.22 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=66.8
Q ss_pred CCccCCCCCC--CC----CccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc-c----------cccccccc
Q 005334 318 GNLCMTGSLI--PA----KVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE-L----------VADAQLLP 380 (701)
Q Consensus 318 ~~~C~~~~~~--~~----~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~----------~~~~~~~p 380 (701)
...|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|++|+...... . ..+...||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 3568665432 22 377899999999999999999999999999999998654211 1 11234699
Q ss_pred eEEechhhHHHHHHhHhcCCCCeE
Q 005334 381 SANVGEKAGDAIKNYISSDPGPMA 404 (701)
Q Consensus 381 ~~~i~~~~g~~l~~~~~~~~~~~~ 404 (701)
+++|+..+|+.|+..+..+...+.
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999987765443
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=78.80 Aligned_cols=94 Identities=22% Similarity=0.304 Sum_probs=72.6
Q ss_pred eeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc----ccccccc
Q 005334 303 MVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE----LVADAQL 378 (701)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~----~~~~~~~ 378 (701)
.-++++.. ...|.+..+ +.+++|||+|++|+.|.+.+|..+++++||.|+|++|+...+.. ...+...
T Consensus 23 ~g~lv~~~-------~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~ 94 (122)
T cd02130 23 TGPLVVVP-------NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPY 94 (122)
T ss_pred EEEEEEeC-------CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCE
Confidence 45666642 246876554 35799999999999999999999999999999999988732211 1123457
Q ss_pred cceEEechhhHHHHHHhHhcCCCCeE
Q 005334 379 LPSANVGEKAGDAIKNYISSDPGPMA 404 (701)
Q Consensus 379 ~p~~~i~~~~g~~l~~~~~~~~~~~~ 404 (701)
+|++.|+..+|+.|++.+.++.+.++
T Consensus 95 Ip~v~Is~~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 95 VPTVGISQEDGKALVAALANGGEVSA 120 (122)
T ss_pred eeEEEecHHHHHHHHHHHhcCCcEEE
Confidence 99999999999999999988776544
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.9e-06 Score=79.05 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=66.9
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccc------ccccccceEEechhhHHH
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELV------ADAQLLPSANVGEKAGDA 391 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 391 (701)
...|.+.. .+++|||+|++||.|++.+|..+++++||.++|++|+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46797654 478999999999999999999999999999999998765321111 113579999999999999
Q ss_pred HHHhHhcCCCCe
Q 005334 392 IKNYISSDPGPM 403 (701)
Q Consensus 392 l~~~~~~~~~~~ 403 (701)
|++.+..+...+
T Consensus 125 L~~~l~~g~~Vt 136 (139)
T cd02132 125 LNKSLDQGKKVE 136 (139)
T ss_pred HHHHHHcCCcEE
Confidence 999998776543
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.5e-06 Score=78.71 Aligned_cols=74 Identities=27% Similarity=0.510 Sum_probs=60.4
Q ss_pred CCCCCccceEEEEecCCCc-----hhhhhHHHhHcCceEEEEeecCCC-C-c-cccc---cccccceEEechhhHHHHHH
Q 005334 326 LIPAKVAGKIVVCDRGGNS-----RVEKGVEVKDAGGVGMILTNTDSY-G-E-ELVA---DAQLLPSANVGEKAGDAIKN 394 (701)
Q Consensus 326 ~~~~~~~gkiv~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~~-~-~-~~~~---~~~~~p~~~i~~~~g~~l~~ 394 (701)
+...+++|||+|++||.|. |.+|.++++++||.|+|++|+... + . .... ....||++.++..+|+.|++
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 3456799999999999999 999999999999999999998722 1 1 1112 14689999999999999999
Q ss_pred hHhcC
Q 005334 395 YISSD 399 (701)
Q Consensus 395 ~~~~~ 399 (701)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 88544
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.4e-06 Score=75.92 Aligned_cols=81 Identities=15% Similarity=0.252 Sum_probs=65.3
Q ss_pred CCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc--c----cccccccceEEechhhHH
Q 005334 317 SGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE--L----VADAQLLPSANVGEKAGD 390 (701)
Q Consensus 317 ~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~----~~~~~~~p~~~i~~~~g~ 390 (701)
....|.+. +..+++|||+|++||.|+|.+|..+++++||.++|++|+...... . ......+|+++++..+++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 34679665 567899999999999999999999999999999999987653211 1 123457999999999999
Q ss_pred HHHHhHhcC
Q 005334 391 AIKNYISSD 399 (701)
Q Consensus 391 ~l~~~~~~~ 399 (701)
.|+.++...
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 999887543
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4e-06 Score=92.18 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=97.4
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
+...|..+++|.++.|+|.|+|+...||+..+.- . +...|. .... -+......+......|||-|++-.+..
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~-~-~~~s~d-----~~~~-~~~p~~~~~~~~~~~~g~~Ca~~~a~~ 93 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNNY-D-PLGSYD-----VNRH-DNDPEPRCDGTNENKHGTRCAGCVAAR 93 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCccccccc-C-cceeEe-----eecC-CCCcccccCCCCccccCCCCCcccccc
Confidence 4679999999999999999999999999998642 1 111111 1100 011112222334678999999999887
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH-cCCeEEEEeccCCCCC----CccCHHHHHH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE-DGVNVMSMSIGGGLTD----YYRDTVAIGA 233 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~-~gvdVInlSlG~~~~~----~~~d~i~~a~ 233 (701)
.... --..|+++++++..++++.. ...+...+...... .-+++-+.|||.+... .-......+.
T Consensus 94 ~~~~--------~C~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~ 162 (431)
T KOG3525|consen 94 ANNL--------TCGVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTLAREAL 162 (431)
T ss_pred cCCC--------cCCCCcccCccccceeeeee---ecccceecccccCCCCCceeecCcCCcccCCCcCCCCcchhhhhh
Confidence 5222 12379999999999988752 11222222222222 3578999999976421 1112222222
Q ss_pred HH-----HHHCCCEEEEecCCCCCCCC
Q 005334 234 FT-----AMAQGIFVSCSAGNGGPYAN 255 (701)
Q Consensus 234 ~~-----a~~~Gi~vV~AAGN~G~~~~ 255 (701)
+. ...+|-+.|++.||.|....
T Consensus 163 ~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 163 VYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred hccccccccCCCCeeEEEecCcccccc
Confidence 22 23568899999999885543
|
|
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-05 Score=93.93 Aligned_cols=158 Identities=19% Similarity=0.228 Sum_probs=87.2
Q ss_pred CCCCCCCCCCCCEEEEEc-cCCCCCCCCcc--CC--CCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhh
Q 005334 81 TLFPTSEVQSEVIVGVLD-TGVWPEIKSFD--DT--GMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTA 155 (701)
Q Consensus 81 ~~~~~~~~G~gVvVgVID-tGId~~Hp~f~--~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgia 155 (701)
.+.+.+.+|+|+.||||| -|-.+..-++. +. |.++++. .+ ..+ -.-..+|++|=+.=
T Consensus 219 ~l~~~g~tGkG~tIaIid~yG~p~~~~dl~~Fd~~~Gip~~~~-~~-V~~---------------ig~g~~~~~~g~~E- 280 (1174)
T COG4934 219 ALYESGATGKGETIAIIDAYGDPYNNQDLYSFDQQYGIPNPIL-SR-VTY---------------IGPGIGSGTGGAEE- 280 (1174)
T ss_pred ecccCCCCCCCcEEEEEeccCCcccHHHHHHHHHhhCCCCCCc-eE-EEE---------------eCCCCCCCCCcccc-
Confidence 456667889999999999 55444333222 11 1111000 00 000 00244566664420
Q ss_pred cccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCC-eEEEEeccCCC---C--CCccCHH
Q 005334 156 AGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGV-NVMSMSIGGGL---T--DYYRDTV 229 (701)
Q Consensus 156 AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gv-dVInlSlG~~~---~--~~~~d~i 229 (701)
.-++..-..-+||+|+|..+-. .. .....+..|+.+-...-+ -+|-+||+... . +.+-+.+
T Consensus 281 ----------~sLDVE~s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~ 347 (1174)
T COG4934 281 ----------TSLDVEWSHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLM 347 (1174)
T ss_pred ----------ceeehhhhhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHH
Confidence 1112223467999999998866 21 222223333333222211 33445666532 1 1133455
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCCCc--------cccCCCceEEecC
Q 005334 230 AIGAFTAMAQGIFVSCSAGNGGPYANS--------ISNVAPWITTVGA 269 (701)
Q Consensus 230 ~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~ap~vitVgA 269 (701)
..-.+.|..+||.+++|+|.+|....+ .+..+||+++||.
T Consensus 348 d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 348 DLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 566668889999999999999876542 4458899999997
|
|
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.7e-06 Score=75.39 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=71.2
Q ss_pred eeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc-ccccccccceE
Q 005334 304 VPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE-LVADAQLLPSA 382 (701)
Q Consensus 304 ~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~p~~ 382 (701)
+|++..... .......|.+...+..+++|||+|++||.|.+.+|..+++++||.++|++|+...... ...+...+|.+
T Consensus 28 ~p~~~~~~~-~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~ 106 (129)
T cd02124 28 LPLWALSLD-TSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAA 106 (129)
T ss_pred ceEEEeecc-cCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeE
Confidence 555443322 2244578987655556899999999999999999999999999999999987654221 12233345666
Q ss_pred EechhhHHHHHHhHhcCCCCe
Q 005334 383 NVGEKAGDAIKNYISSDPGPM 403 (701)
Q Consensus 383 ~i~~~~g~~l~~~~~~~~~~~ 403 (701)
.+ ..+|+.|++.+..+...+
T Consensus 107 ~~-~~~G~~l~~~l~~G~~vt 126 (129)
T cd02124 107 VT-PEDGEAWIDALAAGSNVT 126 (129)
T ss_pred Ee-HHHHHHHHHHHhcCCeEE
Confidence 66 999999999998765433
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.7e-06 Score=77.42 Aligned_cols=84 Identities=27% Similarity=0.303 Sum_probs=68.2
Q ss_pred CCccCCCCCCC---CCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc-ccc-----cccccceEEechhh
Q 005334 318 GNLCMTGSLIP---AKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE-LVA-----DAQLLPSANVGEKA 388 (701)
Q Consensus 318 ~~~C~~~~~~~---~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~-----~~~~~p~~~i~~~~ 388 (701)
...|.+....+ ..+.|+|+|++||.|+|.+|..+++++||.++|++|+...... ... ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45797766533 7899999999999999999999999999999999998654221 111 24589999999999
Q ss_pred HHHHHHhHhcCCC
Q 005334 389 GDAIKNYISSDPG 401 (701)
Q Consensus 389 g~~l~~~~~~~~~ 401 (701)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999877654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0001 Score=66.11 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=56.0
Q ss_pred eeEEEEEEEeeCCCCCe-EEEEEE-e----c--CCc----------e-EEEEeeCeEEEeecceeEEEEEEEEeee---C
Q 005334 616 STVKYTRTLTNVGTPTT-YMVSVS-S----Q--STS----------V-KILVEPESLSFSRQYEKKSYVVTFTASS---M 673 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~-y~~~v~-~----~--p~g----------~-~v~v~p~~l~~~~~~~~~~~~vt~~~~~---~ 673 (701)
...+++.|++|.|+... |+++.. . . ..| . .+...|..|++ ++|++++++|+|+.++ .
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 45889999999999887 888765 1 1 111 1 67788899999 7999999999999964 2
Q ss_pred CCCCeEEEEEEEEc-CC-eEEEeeEE
Q 005334 674 PSGTTSFARLQWSD-GK-HVVGSPIA 697 (701)
Q Consensus 674 ~~~~~~~G~~~~~~-~~-~~v~~P~~ 697 (701)
..+.|++|+|.+++ .. ..+++|+.
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 45789999999994 44 59999984
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=66.31 Aligned_cols=91 Identities=21% Similarity=0.207 Sum_probs=68.9
Q ss_pred CceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCC--chhhhhHHHhHcCceEEEEeecCCCCcccc-----
Q 005334 301 GSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGN--SRVEKGVEVKDAGGVGMILTNTDSYGEELV----- 373 (701)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----- 373 (701)
....++++.+.. .+..+...+++|||++++++.+ .+.+|..+++++||.|+|++|.........
T Consensus 22 ~~~~~lV~~g~G---------~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~ 92 (127)
T cd04819 22 EAKGEPVDAGYG---------LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGT 92 (127)
T ss_pred CeeEEEEEeCCC---------CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccc
Confidence 346788886533 1122335579999999999998 888999999999999999998765432211
Q ss_pred --ccccccceEEechhhHHHHHHhHhcCC
Q 005334 374 --ADAQLLPSANVGEKAGDAIKNYISSDP 400 (701)
Q Consensus 374 --~~~~~~p~~~i~~~~g~~l~~~~~~~~ 400 (701)
.....+|++.|+.++++.|...++.+.
T Consensus 93 ~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 93 EDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 223579999999999999999987643
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=61.34 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=60.0
Q ss_pred CCCCccceEEEEecCCC------chhhh-------hHHHhHcCceEEEEeecCCC-------Ccccc-ccccccceEEec
Q 005334 327 IPAKVAGKIVVCDRGGN------SRVEK-------GVEVKDAGGVGMILTNTDSY-------GEELV-ADAQLLPSANVG 385 (701)
Q Consensus 327 ~~~~~~gkiv~~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~~-------~~~~~-~~~~~~p~~~i~ 385 (701)
...+++||||++.++.| .+..| ...+.++||.|+|++|.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999999999 88887 68999999999999985321 11111 223469999999
Q ss_pred hhhHHHHHHhHhcCCCCe
Q 005334 386 EKAGDAIKNYISSDPGPM 403 (701)
Q Consensus 386 ~~~g~~l~~~~~~~~~~~ 403 (701)
.+++..|...+..+...+
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 999999999988765433
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.005 Score=59.54 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=56.7
Q ss_pred CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc------------------------------ccc---
Q 005334 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE------------------------------LVA--- 374 (701)
Q Consensus 328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~------------------------------~~~--- 374 (701)
..+++|||+|++++.|.+.+|..+|+++||+|+|++++..+... ...
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 45799999999999999999999999999999999987422100 000
Q ss_pred -cccccceEEechhhHHHHHHhHhcC
Q 005334 375 -DAQLLPSANVGEKAGDAIKNYISSD 399 (701)
Q Consensus 375 -~~~~~p~~~i~~~~g~~l~~~~~~~ 399 (701)
....||+.-|+..+++.|++.+.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1235899999999999999987543
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.014 Score=54.18 Aligned_cols=63 Identities=19% Similarity=0.139 Sum_probs=50.0
Q ss_pred ceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCC------------------chhhhhHHHhHcCceEEEEe
Q 005334 302 SMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGN------------------SRVEKGVEVKDAGGVGMILT 363 (701)
Q Consensus 302 ~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~ 363 (701)
...|+++.+-.- ....|....+...+++||||++.++.| .+..|...++++||.|+|++
T Consensus 20 ~~aelVfvGyGi---~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 20 KDAPLVFVGYGI---KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred cceeeEEecCCc---CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 457788766431 234687778888899999999998876 45679999999999999999
Q ss_pred ecCC
Q 005334 364 NTDS 367 (701)
Q Consensus 364 n~~~ 367 (701)
++..
T Consensus 97 ~~~~ 100 (142)
T cd04814 97 HELA 100 (142)
T ss_pred eCCC
Confidence 8755
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.022 Score=52.56 Aligned_cols=64 Identities=28% Similarity=0.244 Sum_probs=50.1
Q ss_pred ceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCc------------hhhhhHHHhHcCceEEEEeecCCC
Q 005334 302 SMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNS------------RVEKGVEVKDAGGVGMILTNTDSY 368 (701)
Q Consensus 302 ~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~~ 368 (701)
...++++.+-.. ....|....+...+++|||||+.++.+. +..|..++.+.||.|+|+++....
T Consensus 22 v~gelVfvGyG~---~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGL---VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCc---CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 456777766432 2356877777788999999999998763 567999999999999999997543
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.023 Score=61.51 Aligned_cols=79 Identities=20% Similarity=0.295 Sum_probs=64.5
Q ss_pred CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCC------CccccccccccceEEechhhHHHHHHhHhcCCC
Q 005334 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSY------GEELVADAQLLPSANVGEKAGDAIKNYISSDPG 401 (701)
Q Consensus 328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 401 (701)
...++||++++.||.|.|.+|...++++||.++++.|+..+ +.........||.+++++++++.+.....++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 56889999999999999999999999999999999998543 233344567899999999999999886666655
Q ss_pred CeEEE
Q 005334 402 PMATI 406 (701)
Q Consensus 402 ~~~~i 406 (701)
.+..+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 44433
|
|
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.034 Score=52.24 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=48.8
Q ss_pred ceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCC------------------CchhhhhHHHhHcCceEEEEe
Q 005334 302 SMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGG------------------NSRVEKGVEVKDAGGVGMILT 363 (701)
Q Consensus 302 ~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~ 363 (701)
..-++|+.+-. .....|....+...+++|||||+.++. |.+..|..++++.||.|+|++
T Consensus 20 vtg~lVfvGyG---i~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~ 96 (151)
T cd04822 20 VTAPVVFAGYG---ITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVV 96 (151)
T ss_pred ceEeEEEecCC---cCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEE
Confidence 35677776543 224567766777789999999998763 456789999999999999999
Q ss_pred ecCCC
Q 005334 364 NTDSY 368 (701)
Q Consensus 364 n~~~~ 368 (701)
++...
T Consensus 97 ~d~~~ 101 (151)
T cd04822 97 NGPNS 101 (151)
T ss_pred eCCcc
Confidence 98654
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.073 Score=53.30 Aligned_cols=40 Identities=35% Similarity=0.418 Sum_probs=36.3
Q ss_pred CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCC
Q 005334 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDS 367 (701)
Q Consensus 328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 367 (701)
..+++|||||++++.+.+.+|..+++++||.|+|+++...
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 5689999999999999888999999999999999998653
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.17 Score=41.85 Aligned_cols=57 Identities=28% Similarity=0.233 Sum_probs=38.2
Q ss_pred eeEEEEEEEeeCCCCC-e-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeC
Q 005334 616 STVKYTRTLTNVGTPT-T-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSM 673 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~-~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~ 673 (701)
.+.+++.+|+|-|... . .++++. .|.|-.+...|..+.--++|++++++++|++..+
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~-~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLS-LPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CEEEEEEEEEECCCCceeeEEEEEe-CCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 6899999999998765 3 888888 8999998889988764489999999999998754
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.76 Score=39.98 Aligned_cols=80 Identities=25% Similarity=0.177 Sum_probs=59.5
Q ss_pred eeEEEEEEEeeCCCCCe-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeCCCCCeEEEEEEEEcCCeEEEe
Q 005334 616 STVKYTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGS 694 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~~~v~~ 694 (701)
...+.+.+++|.+.... |++... ......++++|..=.+ ++|++.++.|+|.+. ... +.+.+.|...-....+.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~-~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~-~~~-g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQP-ESLSSFFSVEPPSGFL-APGESVELEVTFSPT-KPL-GDYEGSLVITTEGGSFEI 95 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeC-CcCCCCEEEECCCCEE-CCCCEEEEEEEEEeC-CCC-ceEEEEEEEEECCeEEEE
Confidence 46778889999999887 998754 3234567777776556 789999999999965 222 346888988866678888
Q ss_pred eEEEE
Q 005334 695 PIAFS 699 (701)
Q Consensus 695 P~~v~ 699 (701)
|+-+.
T Consensus 96 ~v~a~ 100 (102)
T PF14874_consen 96 PVKAE 100 (102)
T ss_pred EEEEE
Confidence 88665
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.048 Score=50.69 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=36.8
Q ss_pred CCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCC
Q 005334 329 AKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSY 368 (701)
Q Consensus 329 ~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 368 (701)
-+++|||++++.|...+..|..++++.||+|+|+|.+..+
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 5799999999999999999999999999999999987543
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.076 Score=48.88 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=71.8
Q ss_pred eeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccc----------
Q 005334 303 MVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEEL---------- 372 (701)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~---------- 372 (701)
.++|+.+. ....|.... +.-...|.+.+.+||+|+|..|..++.++||..+|+.++......+
T Consensus 65 ~~~lV~ad------Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~ 137 (193)
T KOG3920|consen 65 NLELVLAD------PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDE 137 (193)
T ss_pred CcceeecC------ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcc
Confidence 45666543 456675432 2346778999999999999999999999999999998776554433
Q ss_pred cccccccceEEechhhHHHHHHhHhcCCCCeEEEEec
Q 005334 373 VADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISR 409 (701)
Q Consensus 373 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 409 (701)
..+...+|++++-..+|..+..-+..-..+-+.|...
T Consensus 138 sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 138 SQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred cccccCCceEEEeccceEEEehhHHHhCCccEEEecc
Confidence 2346789999999988887766665555555555443
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.56 Score=49.84 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=58.8
Q ss_pred CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccc----cccccccceEEechhhHHHHHHhHhcC
Q 005334 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEEL----VADAQLLPSANVGEKAGDAIKNYISSD 399 (701)
Q Consensus 328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----~~~~~~~p~~~i~~~~g~~l~~~~~~~ 399 (701)
.......+++..||+|+|.+|..+++++|..++|++|+....... ......++.++++...|+.|..|....
T Consensus 75 ~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~~ 150 (348)
T KOG4628|consen 75 STRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGRT 150 (348)
T ss_pred CCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhccc
Confidence 345667899999999999999999999999999999976654332 234567899999999999999885443
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=89.01 E-value=3.3 Score=37.16 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=39.9
Q ss_pred eeEEEEEEEeeCCCCCe-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeC
Q 005334 616 STVKYTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSM 673 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~ 673 (701)
-.-.++.+++|...... |++++. .++|+.+......+.+ ++|++.++.|.+..+..
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~-g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVE-GLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEE-S-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEe-cCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 45678889999999888 999999 8889999665588888 79999999999998754
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=88.66 E-value=2 Score=40.70 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=33.1
Q ss_pred CCCCCCccceEEEEecCCCch-------------------hhhhHHHhHcCceEEEEeecC
Q 005334 325 SLIPAKVAGKIVVCDRGGNSR-------------------VEKGVEVKDAGGVGMILTNTD 366 (701)
Q Consensus 325 ~~~~~~~~gkiv~~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~~n~~ 366 (701)
.+..-+++||||++..+...+ ..|.+.+++.||.|+|+++..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 455679999999998765422 238899999999999998764
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 701 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-108 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 4e-96 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 5e-11 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 4e-07 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 1e-06 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 1e-06 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-06 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 2e-06 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 2e-06 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 2e-06 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 2e-06 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 2e-06 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 2e-06 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 3e-06 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 3e-06 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 3e-06 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 3e-06 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 3e-06 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 3e-06 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 4e-06 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 5e-06 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 6e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 7e-06 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 7e-06 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 7e-06 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 7e-06 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 7e-06 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 8e-06 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 9e-06 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 9e-06 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 9e-06 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 9e-06 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 9e-06 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 9e-06 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 1e-05 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 1e-05 | ||
| 1r6v_A | 671 | Crystal Structure Of Fervidolysin From Fervidobacte | 1e-05 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 1e-05 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 3e-05 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 5e-05 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 1e-04 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 2e-04 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 2e-04 | ||
| 3lpd_A | 339 | Crystal Structure Of A Subtilisin-Like Protease Len | 4e-04 | ||
| 3lpa_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 4e-04 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 4e-04 | ||
| 3lpc_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 4e-04 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 4e-04 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 4e-04 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 4e-04 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 7e-04 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 8e-04 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 8e-04 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 8e-04 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 8e-04 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 8e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium Pennivorans, A Keratinolytic Enzyme Related To Subtilisin Length = 671 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339 | Back alignment and structure |
|
| >pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 631 bits (1629), Expect = 0.0
Identities = 246/661 (37%), Positives = 348/661 (52%), Gaps = 42/661 (6%)
Query: 67 TTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGV--- 123
TT T +FL L S L+P S + +VIV VLD+G+WPE SF D GM +P+ WKG+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 124 -----------------WYEEAVGPID--ETAESKSPRDDDGHGTHTSTTAAGSVVNGAS 164
++ + + D S RD DGHGTH ++ AG+ G S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 165 LFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDY 224
FG+A GTARG+A +AR+A YK + G F SD++A MD+A+ DGV+++S+S G
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIPL 180
Query: 225 YRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGN 284
Y D ++I +F AM +G+ VS SAGN GP S++N +PWI V +G DR F ++LGN
Sbjct: 181 YEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN 240
Query: 285 GKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNS 344
G G SL+ R P++ +S SS L IV+CD G+
Sbjct: 241 GLKIRGWSLFPARA-FVRDSPVIYNKTLSDCSSEELLSQ----VENPENTIVICDDNGDF 295
Query: 345 RVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMA 404
++ + A I + D + P V +K G + NY+ + P A
Sbjct: 296 S-DQMRIITRARLKAAIFISED--PGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTA 352
Query: 405 TIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESD 464
TI + T L +P+PVVAA S+RGP+ I KPD++APGV ILA + V T + ++
Sbjct: 353 TITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTN 412
Query: 465 -KRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDI 523
+ + SGTSM+ PH +G+AA+LKAAHPEWSPSAI+SA+MTTA + K + D
Sbjct: 413 ILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDS 472
Query: 524 STGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACL 583
+ +TP D GAGHVDP ALDPGLVYDAT QDY++ LC+L+++ Q K +
Sbjct: 473 DNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASH- 531
Query: 584 SSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPT-TYMVSVSSQST 642
+ + D+NYPSF + G K+ RT+TNVG TY + +
Sbjct: 532 -NCSNPSADLNYPSFIALYSIE-----GNFTLLEQKFKRTVTNVGKGAATYKAKLKAPK- 584
Query: 643 SVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQW--SDGKHVVGSPIAFSW 700
+ I V P+ L F + EK+SY +T + + + W +G H V SPI S
Sbjct: 585 NSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSP 644
Query: 701 T 701
Sbjct: 645 I 645
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 629 bits (1624), Expect = 0.0
Identities = 259/652 (39%), Positives = 353/652 (54%), Gaps = 51/652 (7%)
Query: 67 TTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVW-- 124
TTR+ +FLG T+ S+V+S ++VGVLDTG+WPE SFDD G P P WKG
Sbjct: 1 TTRSWDFLGF--PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 125 -------------YEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASG 171
+G + PRD +GHGTHT++TAAG +V+ A+L+G G
Sbjct: 59 SNNFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLG 118
Query: 172 TARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGL-TDYYRDTVA 230
TARG AR+A YKVCW GC +DILA D AI DGV+++S+S+GG Y+ D +A
Sbjct: 119 TARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIA 178
Query: 231 IGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSG 290
IG+F A+ +GI S SAGNGGP + ++++PW+ +V A T+DR F T V +GNG+SF G
Sbjct: 179 IGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQG 238
Query: 291 VSLYSRRPLSGSMVPIVDAANVSSTSS-GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKG 349
VS+ + +V D N S C S+ P + GKIVVC+
Sbjct: 239 VSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPH---- 294
Query: 350 VEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISR 409
K G +L +++ AD+ LPS+ + A YI S P AT I +
Sbjct: 295 EFFKSLDGAAGVLMTSNTRD---YADSYPLPSSVLDPNDLLATLRYIYSIRSPGAT-IFK 350
Query: 410 GTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVS 469
T + +PVV +FSSRGPN T +++KPD+ PGV ILA W G +R+
Sbjct: 351 STTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGG---IRRNTL 407
Query: 470 FNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPS 529
FNIISGTSMSCPH++G+A +K +P WSP+AIKSALMTTA N + P
Sbjct: 408 FNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN---------ARFNPQ 458
Query: 530 TPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYS 589
F +G+GHV+P+ A+ PGLVYDA DY+ FLC Y++ +++ T AC S T
Sbjct: 459 AEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGR 518
Query: 590 LGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPT-TYMVSVSSQSTSVKILV 648
+ D+NYPSF + T + RTLT+V TY +S+ + I V
Sbjct: 519 VWDLNYPSFGLSVSP--------SQTFNQYFNRTLTSVAPQASTYRAMISAPQ-GLTISV 569
Query: 649 EPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPIAFSW 700
P LSF+ ++KS+ +T S G A L WSDG H V SPI +
Sbjct: 570 NPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASLVWSDGVHYVRSPITITS 619
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 449 bits (1156), Expect = e-146
Identities = 110/592 (18%), Positives = 193/592 (32%), Gaps = 58/592 (9%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGV--------------WYEEAVGPIDETAE 137
+V V+D G +++ T K W + V + ++
Sbjct: 19 TVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSK 78
Query: 138 SKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGC--FG 195
D HGTH S +G+ A G +A++ +V + G +
Sbjct: 79 DGKTAVDQEHGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRVEIVNGLADYA 134
Query: 196 SDILAGMDKAIEDGVNVMSMSIGG--GLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPY 253
+ + AI G V++MS G D A ++G+ + SAGN +
Sbjct: 135 RNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSF 194
Query: 254 A---NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAA 310
P VG + T S K + +P++
Sbjct: 195 GGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTN 254
Query: 311 NVSSTSSGNL----CMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTD 366
+ + T V GKI + +RG +K + K AG VG+++ +
Sbjct: 255 RFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQ 314
Query: 367 SYGEEL-VADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFS 425
G + + + +P+A + K G +K+ T + L ++ FS
Sbjct: 315 DKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKT----ITFNATPKVLPTASGTKLSRFS 370
Query: 426 SRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSG 485
S G +KPD+ APG +IL+ + +SGTSMS P V+G
Sbjct: 371 SWGLTA--DGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAG 415
Query: 486 LAALLKAAHPEWSPSAIKSALMTTAYSTNGN-GKTLLDISTGQPSTPFDFGAGHVDPVAA 544
+ LL+ + P S + A + L D +P GAG VD A
Sbjct: 416 IMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKA 475
Query: 545 LDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYPSFSVPFET 604
+ T +D L+ S + + + S K L Y + +
Sbjct: 476 SAATMY--VTDKDNTSSKVHLNNVSDKFEV--TVNVHNKSDKPQEL---YYQATVQTDKV 528
Query: 605 ASGTWGGVGATSTVKYTRTLT-NVGTPTTYMVSVSSQSTSVKILVEPESLSF 655
+ + +T + V + + S +L + ++ F
Sbjct: 529 DGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYF 580
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 7e-30
Identities = 82/481 (17%), Positives = 149/481 (30%), Gaps = 100/481 (20%)
Query: 90 SEVIVGVLDTGVW---PEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDG 146
+ ++D+G ++ + G T P +++
Sbjct: 22 GNRTICIIDSGYDRSHNDLNA----------NNVTGT-------NNSGTGNWYQPGNNNA 64
Query: 147 HGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGM 202
HGTH + T A + N + G A + KV G S ++A +
Sbjct: 65 HGTHVAGTIAA-IANNEGVVGVMPN------QNANIHIVKVF---NEAGWGYSSSLVAAI 114
Query: 203 DKAIED-GVNVMSMSIGG-GLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNV 260
D + G NV++MS+GG G T R+ + T G+ + +AGN G + S
Sbjct: 115 DTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVLLIAAAGNAGDSSYSYPAS 170
Query: 261 APWITTVGAGTLDRNFPTYVSLGNGKSFS--GVSLYSRRP------LSGSMVPIVDAANV 312
+ +V A + + + + S G ++ S ++ +N
Sbjct: 171 YDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNG 230
Query: 313 SSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYG--- 369
+ S PA + A + ++ +
Sbjct: 231 VVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYP 290
Query: 370 ----EELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFS 425
+ A A ++N D T+ S + + + +A +
Sbjct: 291 EINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPS----VSVDRATGLALKA 346
Query: 426 SRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSG 485
G + + G + +GTSM+ PHVSG
Sbjct: 347 KLGQST--------TVSNQGNQ---------------------DYEYYNGTSMATPHVSG 377
Query: 486 LAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAAL 545
+A L+ + HPE S S +++AL TA D+ G G ++ VAA
Sbjct: 378 VATLVWSYHPECSASQVRAALNATA----------DDL--SVAGRDNQTGYGMINAVAAK 425
Query: 546 D 546
Sbjct: 426 A 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-24
Identities = 55/223 (24%), Positives = 83/223 (37%), Gaps = 25/223 (11%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+ FSSRGP LKP+++APG I+A +D + GT+M+
Sbjct: 309 ITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMAT 362
Query: 481 PHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVD 540
PHV+G+AALL AHP W+P +K+AL+ TA DI +GAG V+
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETA-----------DIVKPDEIADIAYGAGRVN 411
Query: 541 PVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYPSFSV 600
A T Y+ + A + T + +
Sbjct: 412 AYKAAYYDNYAKLTFTGYVS-------NKGSQSHQFTISGAGFVTATLYWDNSGSD-LDL 463
Query: 601 PFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVSVSSQSTS 643
+G T+ + + T T+ + V S S S
Sbjct: 464 YLYDPNGNQVDYSYTAYYGFEKVGYYNPTAGTWTIKVVSYSGS 506
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 4e-21
Identities = 65/330 (19%), Positives = 121/330 (36%), Gaps = 60/330 (18%)
Query: 20 SASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSV----LPEVRY-----ELHTTRT 70
A + Y Y +I + ++ K+ + L V++ +
Sbjct: 57 FLGAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVE 115
Query: 71 PEFLGLGKSETLFPTSEVQSE----VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYE 126
E L ++ + + +G++DTG+
Sbjct: 116 TEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG---------------- 159
Query: 127 EAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYK 186
+ +G +D +P DD+GHGTH ++ AAG+ +G +GMA A++ K
Sbjct: 160 KVIGWVDFVNGKTTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIK 212
Query: 187 VCWLAGCFG----SDILAGMDKAIED----GVNVMSMSIGGGLTDYYRDTVAIGAFTAMA 238
V G SDI+ G+D A+++ G+ V+++S+G + D+++ A
Sbjct: 213 VL---NGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWD 269
Query: 239 QGIFVSCSAGNGGPYANSISN--VAPWITTVGAGTLDRNFPTYVSLGNGKSFS------- 289
G+ V +AGN GP ++ + A + TVGA + S G
Sbjct: 270 AGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDVITDFSSRGPTADNRLKPEVVA 329
Query: 290 -GVSLYSRRPLSGSMVPIVDA--ANVSSTS 316
G + + R SM ++ T+
Sbjct: 330 PGNWIIAARASGTSMGQPINDYYTAAPGTA 359
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 9e-24
Identities = 47/242 (19%), Positives = 80/242 (33%), Gaps = 46/242 (19%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
V ++SR P + APG I + + +++GTSM+
Sbjct: 419 VYTWTSRDPCIDG--GQGVTVCAPGGAIASVPQFTMS-----------KSQLMNGTSMAA 465
Query: 481 PHVSGLAAL----LKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGA 536
PHV+G AL LK + E+SP +IK A+ TA PF G
Sbjct: 466 PHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY-------------VDPFAQGH 512
Query: 537 GHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYP 596
G ++ A + + + + L F ++ + K R +S Y
Sbjct: 513 GLLNVEKAFEHLTEHRQSKDNMLRF--SVRVGNNADKGIHLRQGVQRNSIDY-------- 562
Query: 597 SFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMV----SVSSQSTSVKILVEPES 652
+V E + L + + +S + S+ + V+P
Sbjct: 563 --NVYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTG 620
Query: 653 LS 654
L
Sbjct: 621 LQ 622
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 98.0 bits (243), Expect = 4e-21
Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 27/256 (10%)
Query: 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGV--WYEEAVGPIDETAESKSPRDDDG 146
++ + ++DT ++ G + V + +V DE +
Sbjct: 212 TADGWLTIVDTTEQGDLDQALRIGEYSRTHETRNVDDFLSISVNVHDEGNVLEVVGMSSP 271
Query: 147 HGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGC---FGSDILAGMD 203
HGTH S+ A+G+ +S G+A A++ + + G+ ++ M
Sbjct: 272 HGTHVSSIASGN---------HSSRDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMT 322
Query: 204 KAIE-----DGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQ-GIFVSCSAGNGGPYANSI 257
K +E ++V++MS G + + + G+ SAGN GP ++
Sbjct: 323 KVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTV 382
Query: 258 SNVA----PWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLS-GSMVPIVDA--A 310
P + VGA + ++ + + SR P G V A
Sbjct: 383 GTPPDISQPSLIGVGAYVSPQMMEAEYAMREKLPGNVYTWTSRDPCIDGGQGVTVCAPGG 442
Query: 311 NVSSTSSGNLCMTGSL 326
++S + + +
Sbjct: 443 AIASVPQFTMSKSQLM 458
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 7e-22
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 36/126 (28%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
A+FSS GP + D++APGV+I + G + +GTSM+
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMAS 224
Query: 481 PHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVD 540
PHV+G AAL+ + HP W+ + ++S+L T + F +G G ++
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT---------------KLGDSFYYGKGLIN 269
Query: 541 PVAALD 546
AA
Sbjct: 270 VQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 61/235 (25%), Positives = 97/235 (41%), Gaps = 57/235 (24%)
Query: 90 SEVIVGVLDTGVW---PEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDG 146
S V V V+D+G+ P++K V G V +E+ +D++
Sbjct: 24 SNVKVAVIDSGIDSSHPDLK---------VAGGASMV-----------PSETNPFQDNNS 63
Query: 147 HGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGM 202
HGTH + T A + G G+A A + KV G G S I+ G+
Sbjct: 64 HGTHVAGTVAAL--------NNSIGVL-GVAPSASLYAVKVL---GADGSGQYSWIINGI 111
Query: 203 DKAIEDGVNVMSMSIGG-GLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNV- 260
+ AI + ++V++MS+GG + + V A+A G+ V +AGN G +S +
Sbjct: 112 EWAIANNMDVINMSLGGPSGSAALKAAVD----KAVASGVVVVAAAGNEGTSGSSSTVGY 167
Query: 261 ---APWITTVGAGTLDRNFPTYVSLGNGKSFS--GVSLYSRRP------LSG-SM 303
P + VGA ++ S+G GVS+ S P +G SM
Sbjct: 168 PGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSM 222
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 3e-21
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 36/125 (28%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
A+FSS G + +++APG + + + PT ++ ++GTSM+
Sbjct: 185 RASFSSVGA--------ELEVMAPGAGVYSTY-----PTN--------TYATLNGTSMAS 223
Query: 481 PHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVD 540
PHV+G AAL+ + HP S S +++ L +TA + F +G G ++
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTAT---------------YLGSSFYYGKGLIN 268
Query: 541 PVAAL 545
AA
Sbjct: 269 VEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 5e-19
Identities = 58/235 (24%), Positives = 92/235 (39%), Gaps = 58/235 (24%)
Query: 90 SEVIVGVLDTGVW---PEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDG 146
+ V V VLDTG+ P++ VG A D +G
Sbjct: 24 ANVKVAVLDTGIQASHPDLN---------------------VVGGASFVAGEAYNTDGNG 62
Query: 147 HGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGM 202
HGTH + T A +G G+A + KV G S I++G+
Sbjct: 63 HGTHVAGTVAAL--------DNTTGVL-GVAPSVSLYAVKVL---NSSGSGSYSGIVSGI 110
Query: 203 DKAIEDGVNVMSMSIGGGL-TDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNV- 260
+ A +G++V++MS+GG + + V A A+G+ V +AGN G ++ +
Sbjct: 111 EWATTNGMDVINMSLGGASGSTAMKQAVD----NAYARGVVVVAAAGNSGNSGSTNTIGY 166
Query: 261 ---APWITTVGAGTLDRNFPTYVSLGNGKSFS--GVSLYSRRP------LSG-SM 303
+ VGA + N ++ S+G G +YS P L+G SM
Sbjct: 167 PAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNTYATLNGTSM 221
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 4e-21
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 28/137 (20%)
Query: 411 TQLGIQPSPVVAAFSSRGP----NPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKR 466
+ + VA +SSRG + ++ APG ++ + W
Sbjct: 193 ENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG----------- 241
Query: 467 HVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTG 526
+N ISGTSM+ PHVSGLAA + A +P S + ++S L A +DI G
Sbjct: 242 --GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA--------KSVDIKGG 291
Query: 527 QPSTPFD---FGAGHVD 540
+ D G G
Sbjct: 292 YGAAIGDDYASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 6e-19
Identities = 51/243 (20%), Positives = 82/243 (33%), Gaps = 44/243 (18%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
+ + VLDTGV + + + A PI+ S D +GHGTH
Sbjct: 28 INIAVLDTGVNTSHPDLVN-------NVEQCKDFTGATTPINN-----SCTDRNGHGTHV 75
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGMDKAIE 207
+ TA + G+A A + YKV G DI A + A +
Sbjct: 76 AGTALADGGSD-------QAGIYGVAPDADLWAYKVL---LDSGSGYSDDIAAAIRHAAD 125
Query: 208 DGV-----NVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISN--V 260
++SMS+G + + A+ A ++G+ + +AGN G +I
Sbjct: 126 QATATGTKTIISMSLGSSANNSLISS-AVNY--AYSKGVLIVAAAGNSGYSQGTIGYPGA 182
Query: 261 APWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAA----NVSSTS 316
P V A + TY +S S ++ + +V ST
Sbjct: 183 LPNAIAVAALENVQQNGTYRV----ADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW 238
Query: 317 SGN 319
Sbjct: 239 YNG 241
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 95.9 bits (238), Expect = 1e-20
Identities = 57/289 (19%), Positives = 88/289 (30%), Gaps = 33/289 (11%)
Query: 418 SPVVAAFSSRGPNPITPEILKPDLIAPGVNIL-----AGWTGAVGPTGLESDKRHVSFNI 472
+ VA FSSR + APGV IL G G +++
Sbjct: 325 TFRVAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDY 376
Query: 473 ISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPF 532
GTSM+ PHV+G+ A+L P P I+ L TA+ NGNG
Sbjct: 377 YQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD------------H 424
Query: 533 DFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGD 592
D G G V AAL L V+ +F + + T + +
Sbjct: 425 DTGYGLVKLDAALQGPLPTQGGVE---EFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAK 481
Query: 593 VNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVSVSSQSTSVKILVEPES 652
+ SGT+ V P + ++++ E ++
Sbjct: 482 TGPDGIARFPHIDSGTY-----DIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQA 536
Query: 653 LSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPIAFSWT 701
+ + +S S D + VV P+
Sbjct: 537 SFVGFGVSPDATQLNVNFNSTLQVKFSTNLSTLKDPQFVVVDPLLRGVY 585
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 1e-10
Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 38/174 (21%)
Query: 90 SEVIVGVLDTGVW---PEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDG 146
+ +IV V+DTGV P+++ + G +E
Sbjct: 154 TNIIVAVVDTGVDGTHPDLE----------GQVIAGY----RPAFDEELPAGTDSSYGGS 199
Query: 147 HGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG-------SDIL 199
GTH + T A +G G G+A A++ + G +
Sbjct: 200 AGTHVAGTIAAKK-DGK---GIV-----GVAPGAKIMPIVIFDDPALVGGNGYVGDDYVA 250
Query: 200 AGMDKAIEDGVNVMSMSIGG-GLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGP 252
AG+ A + G VM+ S GG G + ++ AM G+ + SAGN
Sbjct: 251 AGIIWATDHGAKVMNHSWGGWGYSYTMKEAFD----YAMEHGVVMVVSAGNNTS 300
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 36/125 (28%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
A+FS G D++APGVN+ + + G+ ++ ++GTSM+
Sbjct: 180 RASFSQYGA--------GLDIVAPGVNVQSTYPGS-------------TYASLNGTSMAT 218
Query: 481 PHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVD 540
PHV+G AAL+K +P WS I++ L TA S +G+G V+
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN---------------LYGSGLVN 263
Query: 541 PVAAL 545
AA
Sbjct: 264 AEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 57/230 (24%), Positives = 88/230 (38%), Gaps = 53/230 (23%)
Query: 90 SEVIVGVLDTGVW--PEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGH 147
S V V VLDTG+ P++ G S +D +GH
Sbjct: 24 SGVKVAVLDTGISTHPDLN------------IRGG---------ASFVPGEPSTQDGNGH 62
Query: 148 GTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGMD 203
GTH + T A + G G+A A + KV G G S I G++
Sbjct: 63 GTHVAGTIAAL--------NNSIGVL-GVAPSAELYAVKVL---GASGSGSVSSIAQGLE 110
Query: 204 KAIEDGVNVMSMSIGG-GLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAP 262
A +G++V ++S+G + V +A ++G+ V ++GN G + S
Sbjct: 111 WAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSGAGSISYPARYA 166
Query: 263 WITTVGAGTLDRNFPTYVSLGNGKSFS--GVSLYSRRP------LSG-SM 303
VGA + N ++ G G GV++ S P L+G SM
Sbjct: 167 NAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSM 216
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 95.1 bits (236), Expect = 2e-20
Identities = 55/299 (18%), Positives = 96/299 (32%), Gaps = 51/299 (17%)
Query: 2 PATFNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEV 61
+ + +L+ + ++ GF +++ E K P + + E
Sbjct: 88 LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI--EE 145
Query: 62 RYELHTTRTPEFLGLGK-SETLFPTSEVQSE-----VIVGVLDTGVWPEIKSFDDTGMGP 115
+ P L + + + E Q V V +LDT + + + +
Sbjct: 146 DSSVFAQSIPW--NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIE------ 197
Query: 116 VPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARG 175
G V E V D T + D HGTH + +G G
Sbjct: 198 ---GRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRDA--------------G 240
Query: 176 MAAQARVATYKVCWLAGCFG----SDILAGMDKAIEDGVN------VMSMSIGGGLTDYY 225
+A A + + +V C G S L G++ + + V+ + + GG +
Sbjct: 241 VAKGASMRSLRVL---NCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVL 297
Query: 226 RDTVAIGAFTAMAQGIFVSCSAGNGGPYANSIS-NVAPWITTVGAGTLDRNFPTYVSLG 283
G+ + +AGN A S AP + TVGA T +LG
Sbjct: 298 NAACQ----RLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPVTLGTLG 352
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 1e-13
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
DL APG +I+ + T F SGTS + HV+G+AA++ +A PE +
Sbjct: 360 DLFAPGEDIIGASSD--CSTC---------FVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 500 SAIKSALMTTA 510
+ ++ L+ +
Sbjct: 409 AELRQRLIHFS 419
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 4e-19
Identities = 62/304 (20%), Positives = 102/304 (33%), Gaps = 77/304 (25%)
Query: 20 SASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYELHTTRTPEFLGLGKS 79
++Y +K I + A L+K PG+ V + ++ P +LG G +
Sbjct: 21 GIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFD--HQAVLLGKPSWLGGGST 77
Query: 80 ETLFP----------------TSEVQSEVIVGVLDTGVW---PEIKSFDDTGMGPVPRGW 120
+ T S + V VLDTGV P++ +
Sbjct: 78 QPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLA-------ANIAWCV 130
Query: 121 KGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQA 180
+ + + + D +GHGTH T A G G+A
Sbjct: 131 STLRG-------KVSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGVV-GVAPGV 174
Query: 181 RVATYKVCWLAGCFG----SDILAGMDKAIED--------------------GVNVMSMS 216
++ + +V G SDI G+++AI V+SMS
Sbjct: 175 QIYSVRVL---DARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMS 231
Query: 217 IGG-GLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRN 275
+GG Y D + A GI + ++GN G + S P + VGA + N
Sbjct: 232 LGGPADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDN 287
Query: 276 FPTY 279
++
Sbjct: 288 IASF 291
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-15
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 48/139 (34%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R P ++ APGV+IL+ + S+ + GT+M+
Sbjct: 288 IASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMAT 324
Query: 481 PHVSGLAALLKAAH-------------PEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQ 527
PHVSG+ AL++AA+ + S + ++ L TA G
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA------- 377
Query: 528 PSTPFDFGAGHVDPVAALD 546
D+G G V A+
Sbjct: 378 -----DYGYGVVRAALAVQ 391
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 5e-19
Identities = 54/243 (22%), Positives = 85/243 (34%), Gaps = 35/243 (14%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
IV V DTG+ +D+ M RG + + + + D +GHGTH
Sbjct: 24 QIVAVADTGLDT---GRNDSSMHEAFRG--------KITALYALGRTNNANDTNGHGTHV 72
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG---SDILAGMDKAIED 208
+ + G NG++ +GMA QA + + G G S++ +A
Sbjct: 73 AGSVLG---NGST--------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSA 121
Query: 209 GVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISN--VAPWITT 266
G + + S G + Y + + +AGN GP +IS A T
Sbjct: 122 GARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAIT 181
Query: 267 VGAGTLDRNFPTYVSLGNGKSFSGVSLYSRR--PLSGSMVPIVDA--ANVSSTSSGNLCM 322
VGA R + V+ +S R G + P V A + S S
Sbjct: 182 VGATENLRPSFGSYADNIN----HVAQFSSRGPTKDGRIKPDVMAPGTFILSARSSLAPD 237
Query: 323 TGS 325
+
Sbjct: 238 SSF 240
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 9e-18
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 10/134 (7%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
VA FSSRGP +KPD++APG IL+ + + ++ + + GTSM+
Sbjct: 202 VAQFSSRGPTKD--GRIKPDVMAPGTFILSARSSLAPDSSFWANH-DSKYAYMGGTSMAT 258
Query: 481 PHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVD 540
P V+G A L+ + K +L+ A G + G G V
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAA-------DIGLGYPNGNQGWGRVT 311
Query: 541 PVAALDPGLVYDAT 554
+L+ V +++
Sbjct: 312 LDKSLNVAYVNESS 325
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 8e-19
Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 31/130 (23%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
FS+ G N K ++APG IL P L +GTSM+
Sbjct: 253 PCHFSNWGGNNT-----KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAA 295
Query: 481 PHVSGLAALLKAAHPE----WSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGA 536
P ++G++ALL + + A+++AL+ TA + P
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA----------IPCDPEVVEEPERCLR 345
Query: 537 GHVDPVAALD 546
G V+ A+
Sbjct: 346 GFVNIPGAMK 355
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 30/246 (12%), Positives = 67/246 (27%), Gaps = 43/246 (17%)
Query: 90 SEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETA------------- 136
++ + ++D + F+ + V W
Sbjct: 49 PQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKE 108
Query: 137 --------ESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVC 188
++K + H H ++T G + G+A RV
Sbjct: 109 EALEAVIPDTKDRIVLNDHACHVTSTIVGQEHSPVF----------GIAPNCRVINMPQD 158
Query: 189 WLAG------CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFT-AMAQGI 241
+ ++ +D A+E G N++ + + + + A +
Sbjct: 159 AVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNV 218
Query: 242 FVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFS-----GVSLYSR 296
+ GN + + V P VGA +D + + G + G +
Sbjct: 219 LIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTPCHFSNWGGNNTKEGILAPGEEILGA 278
Query: 297 RPLSGS 302
+P +
Sbjct: 279 QPCTEE 284
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 5e-18
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 38/131 (29%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
++ F++ + D++APGV I + + + + +SGT+M+
Sbjct: 215 LSDFTNTNE--------EIDIVAPGVGIKSTYLDS-------------GYAELSGTAMAA 253
Query: 481 PHVSGLAALLKAAHPE-----WSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFG 535
PHV+G AL+ + S + I + L+ A G + G
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRA------------TPIGFTAQAEGNG 301
Query: 536 AGHVDPVAALD 546
+D V +
Sbjct: 302 FLTLDLVERIT 312
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 55/284 (19%), Positives = 100/284 (35%), Gaps = 61/284 (21%)
Query: 48 LQKQPGIVSVLPEVRYELHTTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVW---PE 104
++K I +V + P + + ++ ++ S + I+GV+DTG P+
Sbjct: 1 MRKFRLIPYK--QVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPD 58
Query: 105 IKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGAS 164
+ G+ D + + D++GHGTH + T A +
Sbjct: 59 LAERIIGGVNLTT---------------DYGGDETNFSDNNGHGTHVAGTVAAA------ 97
Query: 165 LFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGMDKAIED------GVNVMS 214
SG G+A +A + K G I + A++ + +++
Sbjct: 98 --ETGSGVV-GVAPKADLFIIKAL---SGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIIT 151
Query: 215 MSIGGGL-TDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNV-----APWITTVG 268
MS+GG ++ D V A++ + V C+AGN G + + VG
Sbjct: 152 MSLGGPTDSEELHDAVK----YAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVG 207
Query: 269 AGTLDRNFPTYVSLGNGKSFS--GVSLYSRRP------LSG-SM 303
A D + + GV + S LSG +M
Sbjct: 208 AVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTAM 251
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 9e-18
Identities = 23/139 (16%), Positives = 38/139 (27%), Gaps = 33/139 (23%)
Query: 408 SRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRH 467
S G N + D+ APG NI P
Sbjct: 223 QYRKGETPVLHGGGITGSRFGNNWV-------DIAAPGQNITFLR-----PDA------- 263
Query: 468 VSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQ 527
SGTS + VSG+ A + + +P + + +K L+ +A
Sbjct: 264 -KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDK-------- 314
Query: 528 PSTPFDFGAGHVDPVAALD 546
++ A+
Sbjct: 315 -----VTEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 38/261 (14%), Positives = 68/261 (26%), Gaps = 69/261 (26%)
Query: 90 SEVIVGVLDTGV--WPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGH 147
+ V+V V+D+GV + + G K H
Sbjct: 44 TPVVVSVVDSGVAFIGGLSDSEFAKFSFTQDGSPFPV--------------KKSEALYIH 89
Query: 148 GTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG----CFGSDILAGMD 203
GT ++ A G G+ A +++ +V + +
Sbjct: 90 GTAMASLIASRY-------GIY-----GVYPHALISSRRVIPDGVQDSWIRAIESIMSNV 137
Query: 204 KAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGG------------ 251
++++S G + + + + GN G
Sbjct: 138 FLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRI 197
Query: 252 -----PYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFS------------GVSLY 294
+S++ + V A R T V G G + S G ++
Sbjct: 198 WPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITGSRFGNNWVDIAAPGQNIT 257
Query: 295 SRRP------LSG-SM-VPIV 307
RP SG S IV
Sbjct: 258 FLRPDAKTGTGSGTSEATAIV 278
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 37/126 (29%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+ G D++APGV+I++ TG + +SGTSM+
Sbjct: 191 LASFSNYGT--------WVDVVAPGVDIVSTITGN-------------RYAYMSGTSMAS 229
Query: 481 PHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVD 540
PHV+GLAALL + + I+ A+ TA +G G F G ++
Sbjct: 230 PHVAGLAALLASQGR--NNIEIRQAIEQTADKISGTGT--------------YFKYGRIN 273
Query: 541 PVAALD 546
A+
Sbjct: 274 SYNAVT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 54/225 (24%), Positives = 77/225 (34%), Gaps = 39/225 (17%)
Query: 90 SEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGT 149
S + V+DTGV D V +G+ D P D + HGT
Sbjct: 31 SGQEIAVIDTGVDYTHPDLDGK----VIKGY------------DFVDNDYDPMDLNNHGT 74
Query: 150 HTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED 208
H + AA N G A GMA R+ + G SDI + A +
Sbjct: 75 HVAGIAAAETNNA---TGIA-----GMAPNTRILAVRALDRNGSGTLSDIADAIIYAADS 126
Query: 209 GVNVMSMSIGG-GLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTV 267
G V+++S+G T + V A +G V +AGN G + V
Sbjct: 127 GAEVINLSLGCDCHTTTLENAVN----YAWNKGSVVVAAAGNNGSSTTFEPASYENVIAV 182
Query: 268 GAGTLDRNFPTYVSLGNGKSFS--GVSLYSRRP------LSG-SM 303
GA ++ + G GV + S +SG SM
Sbjct: 183 GAVDQYDRLASFSNYGTWVDVVAPGVDIVSTITGNRYAYMSGTSM 227
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 37/126 (29%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
++FS+ G D+ APG +I + + PT ++ +SGTSM+
Sbjct: 190 KSSFSTYGSWV--------DVAAPGSSIYSTY-----PTS--------TYASLSGTSMAT 228
Query: 481 PHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVD 540
PHV+G+A LL + S S I++A+ TA +G G + G V+
Sbjct: 229 PHVAGVAGLLASQGR--SASNIRAAIENTADKISGTGT--------------YWAKGRVN 272
Query: 541 PVAALD 546
A+
Sbjct: 273 AYKAVQ 278
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 53/228 (23%), Positives = 85/228 (37%), Gaps = 45/228 (19%)
Query: 90 SEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGT 149
S + ++DTGV + G D +P++ +GHGT
Sbjct: 30 SGAKIAIVDTGVQSNHPDLAG-------KVVGG---------WDFVDNDSTPQNGNGHGT 73
Query: 150 HTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGMDKA 205
H + AA N G A G A +A + +V G + + G+ A
Sbjct: 74 HCAGIAAAVTNNS---TGIA-----GTAPKASILAVRVL---DNSGSGTWTAVANGITYA 122
Query: 206 IEDGVNVMSMSIGGGL-TDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWI 264
+ G V+S+S+GG + + V A +G V +AGN G A +
Sbjct: 123 ADQGAKVISLSLGGTVGNSGLQQAVN----YAWNKGSVVVAAAGNAGNTAPNYPAYYSNA 178
Query: 265 TTVGAGTLDRNFPTYVSLGNGKSFS--GVSLYSRRP------LSG-SM 303
V + + N ++ + G+ + G S+YS P LSG SM
Sbjct: 179 IAVASTDQNDNKSSFSTYGSWVDVAAPGSSIYSTYPTSTYASLSGTSM 226
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 3e-17
Identities = 29/136 (21%), Positives = 44/136 (32%), Gaps = 30/136 (22%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHV---------SFN 471
++ FS+ G N D+ APG + V E +
Sbjct: 349 LSEFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYI 401
Query: 472 IISGTSMSCPHVSGLAALLKAA-HPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPST 530
+GT+++ P VSG AL+ H E P L S N +
Sbjct: 402 YQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFS----------- 450
Query: 531 PFDFGAGHVDPVAALD 546
+G G +D AL+
Sbjct: 451 --RYGHGELDVYKALN 464
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 2e-15
Identities = 38/198 (19%), Positives = 63/198 (31%), Gaps = 33/198 (16%)
Query: 90 SEVIVGVLDTGVW---PEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDG 146
+ + ++DTGV ++K+ T G E +ET + D G
Sbjct: 146 ANTKIAIIDTGVMKNHDDLKNNFSTD-SKNLVPLNGFRGTEP----EETGDVHDVNDRKG 200
Query: 147 HGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAI 206
HGT S + A+G G+A + Y+V + + +A
Sbjct: 201 HGTMVSGQTS------------ANGKLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAA 248
Query: 207 EDGVNVMSMSIGGGLTDYYRDTVAIGAFT-------------AMAQGIFVSCSAGNGGPY 253
DG V+++S+G + D A + V +AGN G
Sbjct: 249 NDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGID 308
Query: 254 ANSISNVAPWITTVGAGT 271
N + G G
Sbjct: 309 VNDKQKLKLQREYQGNGE 326
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 48/139 (34%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R P ++ APGV+IL+ + S+ + GT+M+
Sbjct: 213 IASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMAT 249
Query: 481 PHVSGLAALLKAAH-------------PEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQ 527
PHVSG+ AL++AA+ + S + ++ L TA G
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA------------DDLGP 297
Query: 528 PSTPFDFGAGHVDPVAALD 546
D+G G V A+
Sbjct: 298 TGWDADYGYGVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 58/246 (23%), Positives = 91/246 (36%), Gaps = 59/246 (23%)
Query: 90 SEVIVGVLDTGVW---PEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDG 146
S + V VLDTGV P++ + + + + + D +G
Sbjct: 29 SVIQVAVLDTGVDYDHPDLA-------ANIAWCVSTLRG-------KVSTKLRDCADQNG 74
Query: 147 HGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGC-FGSDILAGMDKA 205
HGTH T A + N G G+A ++ + +V G SDI G+++A
Sbjct: 75 HGTHVIGTIAA-LNND-------IGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQA 125
Query: 206 I--------------------EDGVNVMSMSIGG-GLTDYYRDTVAIGAFTAMAQGIFVS 244
I +D V+SMS+GG Y D + A GI +
Sbjct: 126 ILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMII----QAYNAGIVIV 181
Query: 245 CSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP------ 298
++GN G + S P + VGA + N ++ + S GV + S P
Sbjct: 182 AASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDSYET 241
Query: 299 LSG-SM 303
L G +M
Sbjct: 242 LMGTAM 247
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 52/258 (20%), Positives = 83/258 (32%), Gaps = 44/258 (17%)
Query: 90 SEVIVGVLDTGVW--PEIK-------------SFDDTGMGPVPRGWKGVWYEEAVGPIDE 134
V+V V+DTG+ ++ G G + + +
Sbjct: 32 QNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDWFDNWACGGR 91
Query: 135 TAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCF 194
K D HG+H + T A N G A G+A A+V + G +
Sbjct: 92 PDPRKERSDSSWHGSHVAGTIAAVTNNR-------IGVA-GVAYGAKVVPVRALGRCGGY 143
Query: 195 GSDILAGMDKAI----------EDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVS 244
SDI G+ A + V++MS+G Y I A G V
Sbjct: 144 DSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMIDR--ATRLGALVV 201
Query: 245 CSAGNGGPYANSISNVAP----WITTVGAGTLDRNFPTYVSLGNGKSFS--GVSLYSRRP 298
+AGN + SN P + +VGA T ++ + G + G + S
Sbjct: 202 VAAGNEN---QNASNTWPTSCNNVLSVGATTSRGIRASFSNYGVDVDLAAPGQDILSTVD 258
Query: 299 LSGSMVPIVDAANVSSTS 316
+ ++ TS
Sbjct: 259 SGTRRPVSDAYSFMAGTS 276
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 31/129 (24%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A+FS+ G + DL APG +IL+ ++ ++ ++GTSM+ P
Sbjct: 235 ASFSNYGVDV--------DLAAPGQDILSTVDSGTRRPVSDA------YSFMAGTSMATP 280
Query: 482 HVSGLAALLKAA----HPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAG 537
HVSG+AAL+ +A + +P+ +K L++T NG G+G
Sbjct: 281 HVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG-------------RLDRALGSG 327
Query: 538 HVDPVAALD 546
VD AA++
Sbjct: 328 IVDAEAAVN 336
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 19/89 (21%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
++FS+ G D+ APG +I + W + T N ISGTSM+ P
Sbjct: 188 SSFSNYGT--------CLDIYAPGSSITSSWYTSNSAT-----------NTISGTSMASP 228
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTTA 510
HV+G+AAL +P SP+ + + L T A
Sbjct: 229 HVAGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 50/195 (25%), Positives = 72/195 (36%), Gaps = 44/195 (22%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
V V+DTGV F G G+ D D +GHGTH
Sbjct: 33 VTAFVIDTGVLNTHNEFG----GRASSGY------------DFIDNDYDATDCNGHGTHV 76
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGMDKAIE 207
+ T GS G+A V +V C G S ++AG++
Sbjct: 77 AGTIGGSTY--------------GVAKNVNVVGVRVL---NCSGSGSNSGVIAGINWVKN 119
Query: 208 DGVN--VMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSIS-NVAPWI 264
+ V +MS+GGG + D V A+A GI +AGN A + S A
Sbjct: 120 NASGPAVANMSLGGGASQATDDAVN----AAVAAGITFVVAAGNDNSNACNYSPARAADA 175
Query: 265 TTVGAGTLDRNFPTY 279
TVG+ T + + ++
Sbjct: 176 ITVGSTTSNDSRSSF 190
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 3e-14
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
DL APG +I + W + T ++GTSM+ PHV+G+AAL +P +P
Sbjct: 196 DLFAPGASIPSAWYTSDTAT-----------QTLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 500 SAIKSALMTTA 510
+++ SA++ A
Sbjct: 245 ASVASAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 46/195 (23%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
V V V+DTG+ + F G G+ A + +D +GHGTH
Sbjct: 33 VNVYVIDTGIRTTHREFG----GRARVGY--------------DALGGNGQDCNGHGTHV 74
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGMDKAIE 207
+ T G G+A + +V C G S ++AG+D
Sbjct: 75 AGTIGGVTY--------------GVAKAVNLYAVRVL---DCNGSGSTSGVIAGVDWVTR 117
Query: 208 DGVN--VMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSIS-NVAPWI 264
+ V +MS+GGG++ + V ++A G+ + +AGN A + S
Sbjct: 118 NHRRPAVANMSLGGGVSTALDNAVK----NSIAAGVVYAVAAGNDNANACNYSPARVAEA 173
Query: 265 TTVGAGTLDRNFPTY 279
TVGA T ++
Sbjct: 174 LTVGATTSSDARASF 188
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 3e-14
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
DL APG +I+ + T F SGTS + HV+G+AA++ +A PE +
Sbjct: 208 DLFAPGEDIIGASSD--CSTC---------FVSQSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 500 SAIKSALMTTA 510
+ ++ L+ +
Sbjct: 257 AELRQRLIHFS 267
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 7e-13
Identities = 44/203 (21%), Positives = 69/203 (33%), Gaps = 41/203 (20%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
V V +LDT + + + + G V E V D T + D HGTH
Sbjct: 28 VEVYLLDTSIQSDHREIE---------GRVMVTDFENVPEEDGTRFHRQASKCDSHGTHL 78
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGMDKAIE 207
+ +G G+A A + + +V C G S L G++ +
Sbjct: 79 AGVVSGRDA--------------GVAKGASMRSLRVL---NCQGKGTVSGTLIGLEFIRK 121
Query: 208 DGVN------VMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSIS-NV 260
+ V+ + + GG + G+ + +AGN A S
Sbjct: 122 SQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVTAAGNFRDDACLYSPAS 177
Query: 261 APWITTVGAGTLDRNFPTYVSLG 283
AP + TVGA T +LG
Sbjct: 178 APEVITVGATNAQDQPVTLGTLG 200
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 46/195 (23%), Positives = 71/195 (36%), Gaps = 44/195 (22%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
V V+DTGV + F G G+ D D +GHGTH
Sbjct: 31 VTAYVIDTGVNNNHEEFG----GRSVSGY------------DFVDNDADSSDCNGHGTHV 74
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG----SDILAGMDKAIE 207
+ T GS G+A + +V C G S +++G+D +
Sbjct: 75 AGTIGGSQY--------------GVAKNVNIVGVRVL---SCSGSGTTSGVISGVDWVAQ 117
Query: 208 DGVN--VMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSIS-NVAPWI 264
+ V +MS+GGG + V A+ G+ +AGN A + S P
Sbjct: 118 NASGPSVANMSLGGGQSTALDSAVQ----GAIQSGVSFMLAAGNSNADACNTSPARVPSG 173
Query: 265 TTVGAGTLDRNFPTY 279
TVG+ T + ++
Sbjct: 174 VTVGSTTSSDSRSSF 188
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 21/89 (23%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
++FS+ G DL APG I + W + ISGTSM+ P
Sbjct: 186 SSFSNWGSCV--------DLFAPGSQIKSAWYDG-------------GYKTISGTSMATP 224
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTTA 510
HV+G+AAL + +P + L + A
Sbjct: 225 HVAGVAALYLQENNGLTPLQLTGLLNSRA 253
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 33/152 (21%)
Query: 140 SPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG---- 195
+ RD GHGTH + T G+A + + KV G
Sbjct: 63 TARDGHGHGTHCAGTIGSKTW--------------GVAKKVSIFGVKVL---DDSGSGSL 105
Query: 196 SDILAGMDKAIEDGVN-------VMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAG 248
S+I+AGMD D + V SMS+GGG + A + G+FV+ +AG
Sbjct: 106 SNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAA----RLQSSGVFVAVAAG 161
Query: 249 NGGPYANSIS-NVAPWITTVGAGTLDRNFPTY 279
N A + S P + TVGA + T+
Sbjct: 162 NDNRDAANTSPASEPTVCTVGATDSNDVRSTF 193
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D+ APG +I + W G G T N ISGTSM+ PH++GLAA L S
Sbjct: 201 DIFAPGTSITSTWIG--GRT-----------NTISGTSMATPHIAGLAAYLFGLEGG-SA 246
Query: 500 SAIKSALMTTA 510
A+ + T +
Sbjct: 247 GAMCGRIQTLS 257
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 33/152 (21%)
Query: 140 SPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG---- 195
S RD +GHGTH + T G+A + ++ KV G
Sbjct: 62 SSRDGNGHGTHCAGTVGSRTY--------------GVAKKTQLFGVKVL---DDNGSGQY 104
Query: 196 SDILAGMDKAIEDGVN-------VMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAG 248
S I+AGMD D N V S+S+GGG + A + G+ V+ +AG
Sbjct: 105 STIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAA----RLQSSGVMVAVAAG 160
Query: 249 NGGPYANSIS-NVAPWITTVGAGTLDRNFPTY 279
N A + S P + TVGA ++
Sbjct: 161 NNNADARNYSPASEPSVCTVGASDRYDRRSSF 192
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D+ PG +IL+ W G S ISGTSM+ PHV+GLAA L +
Sbjct: 200 DIFGPGTDILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKT-TA 245
Query: 500 SAIKSALMTTA 510
++ + TA
Sbjct: 246 ASACRYIADTA 256
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 2e-07
Identities = 19/89 (21%), Positives = 32/89 (35%)
Query: 452 WTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511
++ G SD N GTS + P +G+ LL A+P + ++ + +A
Sbjct: 247 YSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAV 306
Query: 512 STNGNGKTLLDISTGQPSTPFDFGAGHVD 540
N S +G G +D
Sbjct: 307 GLEKNADGDWRDSAMGKKYSHRYGFGKID 335
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 4e-07
Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 42/243 (17%)
Query: 92 VIVGVLDTGVW---PEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHG 148
V+ ++D G+ ++K + D T K DD HG
Sbjct: 56 VVAAIVDDGLDYENEDLK----------DNFCAEGSW----DFNDNTNLPKPRLSDDYHG 101
Query: 149 THTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIE 207
T + A N G+ A+++ ++ L+G D A + +
Sbjct: 102 TRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRI--LSGDITTEDEAASLIYGL- 150
Query: 208 DGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQ---------GIFVSCSAGNGGPYANSIS 258
D ++ S S G + + A+ + G ++GNGG ++ +
Sbjct: 151 DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCN 210
Query: 259 NVA----PWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSS 314
+ T+GA P Y + S S + S + + +
Sbjct: 211 YDGYTNSIYSITIGAIDHKDLHPPYSEGCSAVMAVTYSSGSGEYIHSSDINGRCSNSHGG 270
Query: 315 TSS 317
TS+
Sbjct: 271 TSA 273
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 5e-07
Identities = 35/216 (16%), Positives = 63/216 (29%), Gaps = 53/216 (24%)
Query: 92 VIVGVLDTGVW---PEIK-------SFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSP 141
++V +LD G+ P++ SFD P P+ +
Sbjct: 40 IVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRY------------------TQ 81
Query: 142 RDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAG 201
+D+ HGT + A NG A A + +D +
Sbjct: 82 MNDNRHGTRCAGEVAAVANNGV-----------CGVGVAYNARIGGVRMLDGEVTDAVEA 130
Query: 202 MDKAIE-DGVNVMSMSIGG--------GLTDYYRDTVAIGAFTAM-AQGIFVSCSAGNGG 251
+ + +++ S S G G + G G ++GNGG
Sbjct: 131 RSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGG 190
Query: 252 PYANSISNVA----PWITTVGAGTLDRNFPTYVSLG 283
+S + + ++ + T N P Y
Sbjct: 191 REHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEAC 226
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 5e-06
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 457 GPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGN 516
+ +D R +GTS S P +G+ AL A+ + ++ ++ T+ + N
Sbjct: 241 EKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLN 300
Query: 517 GKTLLDISTGQPSTPFDFGAGHVDPVAALD 546
G+ + +G G +D A +
Sbjct: 301 ADDWATNGVGRKVSH-SYGYGLLDAGAMVA 329
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 5e-05
Identities = 73/646 (11%), Positives = 158/646 (24%), Gaps = 198/646 (30%)
Query: 25 MLYTYKNVIH----GFSTRLTAKEAESLQKQPGIVSVLPEVRYELHTTRTPEFLGLGKSE 80
Y YK+++ F K+ + + K S+L + + +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPK-----SILSKEEID-------HIIMS---- 57
Query: 81 TLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGW-KGVWYEEAVGPIDETAESK 139
+ + + L + ++ F + + + E P T
Sbjct: 58 ---KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI-NYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 140 SPRDDDGHGTHTSTTAAGSVVNGASLF--GFAS-----GTARGMAAQARVATY-KVCWLA 191
RD + N +F S R + R A + +
Sbjct: 114 EQRD--------------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 192 GCFGSDILAGM---DKAIED--GVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCS 246
G G +A ++ + +++ + M Q +
Sbjct: 160 GS-GKTWVALDVCLSYKVQCKMDFKIFWLNLK-----NCNSPETV---LEMLQKLLYQ-- 208
Query: 247 AGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPI 306
I D + + + + ++ L +P ++ +
Sbjct: 209 -----------------IDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLL-V 249
Query: 307 VDAANVSSTSSGNL----CMTGSLIPAKVAGKIVVCDR-GGNSRVEKGVEVKDAGGVGMI 361
+ NV + + N C KI++ R +
Sbjct: 250 LL--NVQNAKAWNAFNLSC------------KILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 362 LTNTDSYGEELVA-----DAQLLPS----------ANVGEKAGDAI---KNYISSDPGPM 403
+T T + L+ Q LP + + E D + N+ + +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 404 ATIISRG-------------TQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILA 450
TII +L + P I +L ++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSA----------HIPTILLS---------LI- 395
Query: 451 GWTGAVGPTG------------LESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWS 498
W + +E + + +I S + AL H
Sbjct: 396 -WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----H---- 446
Query: 499 PSAIKSALMTTAYSTNGNGKTLLD--ISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQ 556
S + + + ++ LD + H + ++
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYF--------YSHIGHH---LKNIEHPERMTLFRM 495
Query: 557 DYLDFLCALDYSSFQIKQATNRD---FACLSSKTYSLGDV-NYPSF 598
+LDF F ++Q D + S +L + Y +
Sbjct: 496 VFLDF-------RF-LEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 3/111 (2%)
Query: 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMIL---TNTDSYGEELVADAQLLPSANV 384
+ GKI + RG S +K G +I+ T+ G +DA + + +
Sbjct: 110 GKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGI 169
Query: 385 GEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPE 435
++ GDA+ + + AT+ G ++ S V A N
Sbjct: 170 TKQEGDALAANLRAGEKITATVKVAGAEVKTLTSHNVIATKKPDANKKNTN 220
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 701 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.9 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.86 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.02 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.65 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.54 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.28 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.1 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 97.57 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 96.6 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 95.9 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 95.27 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 95.05 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 94.36 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 92.14 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.29 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 81.61 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-126 Score=1093.34 Aligned_cols=612 Identities=39% Similarity=0.652 Sum_probs=551.3
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecc-------cCC--------
Q 005334 67 TTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEA-------VGP-------- 131 (701)
Q Consensus 67 ~~~s~~~~gl~~~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~-------~~~-------- 131 (701)
|+++|+|+||.+..++|..+.+|+||+|||||||||++||+|.+.+++|+|.+|+|.|.... +.+
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 57899999998778899999999999999999999999999999999999999999993210 001
Q ss_pred -------ccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHH
Q 005334 132 -------IDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDK 204 (701)
Q Consensus 132 -------~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ 204 (701)
.+...+..+++|..||||||||||||+.+.+.+++|++.|++.||||+|+|++||+|+..|+..+++++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai~~ 160 (649)
T 3i6s_A 81 KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQ 160 (649)
T ss_dssp HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHHHHHHHH
T ss_pred CcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHHHHHHHH
Confidence 1122345678999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCC
Q 005334 205 AIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGN 284 (701)
Q Consensus 205 ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~ 284 (701)
|+++|+||||||||....+++.+.+++++++|+++||+||+||||+|+...++++.+||+|+|||++.||.|...+.++|
T Consensus 161 A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~lgn 240 (649)
T 3i6s_A 161 AVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN 240 (649)
T ss_dssp HHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEETT
T ss_pred HHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEeCC
Confidence 99999999999999887778889999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCc--cceEEEEecCCCchhhhhHHHhHcCceEEEE
Q 005334 285 GKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKV--AGKIVVCDRGGNSRVEKGVEVKDAGGVGMIL 362 (701)
Q Consensus 285 g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~--~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~ 362 (701)
++++.|.++++.... ...+|+++.. ....|.+..+++..+ +||||+|+++.+.+.+|..+++++|+.|+|+
T Consensus 241 g~~~~g~sl~~~~~~-~~~~plv~~~------~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~ 313 (649)
T 3i6s_A 241 GLKIRGWSLFPARAF-VRDSPVIYNK------TLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFI 313 (649)
T ss_dssp SCEEEEECCCSSCBC-EEEEEEECCT------TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEE
T ss_pred CcEEeeeecccCccc-CcceeeEecc------cccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEE
Confidence 999999999987653 6789999965 356899988888888 9999999999999999999999999999999
Q ss_pred eecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEE
Q 005334 363 TNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLI 442 (701)
Q Consensus 363 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~ 442 (701)
+|.. .....+.+.+|+++++..+++.|++|++++.+++++|.+..+..+..+++.++.||||||+...+++|||||+
T Consensus 314 ~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~ 390 (649)
T 3i6s_A 314 SEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDIL 390 (649)
T ss_dssp CCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCCEE
T ss_pred ecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCeEE
Confidence 9986 4556678899999999999999999999999999999999999998999999999999999988899999999
Q ss_pred ecCCcEEecccCCCCCCCCCCCc-ccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccc
Q 005334 443 APGVNILAGWTGAVGPTGLESDK-RHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLL 521 (701)
Q Consensus 443 APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~ 521 (701)
|||++|+++|+....+.....+. +...|..+||||||||||||+||||||+||+|||++||++||+||+++++.+.++.
T Consensus 391 APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~ 470 (649)
T 3i6s_A 391 APGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIK 470 (649)
T ss_dssp EECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCE
T ss_pred eCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCccc
Confidence 99999999999865544333332 44689999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCccccCccccCCCCccccCChhhHHhhhhcCCCCcceEEEeeccccc--ccCCCCCCCCCCCCCceE
Q 005334 522 DISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFA--CLSSKTYSLGDVNYPSFS 599 (701)
Q Consensus 522 ~~~~~~~~~~~~~G~G~vn~~~A~~~glv~d~~~~dy~~~lc~~~~~~~~~~~~~~~~~~--c~~~~~~~~~~ln~ps~~ 599 (701)
+...+.++++|+||+|+|||.+|++||||||++++||++|||++||+.++|+.|++.+++ |+. .+.+||||||+
T Consensus 471 ~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~----~~~~lNyPs~~ 546 (649)
T 3i6s_A 471 DSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN----PSADLNYPSFI 546 (649)
T ss_dssp ETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC----CCCCCCCSSEE
T ss_pred ccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC----chhhcCCCcEE
Confidence 876678899999999999999999999999999999999999999999999999998777 975 46799999999
Q ss_pred eec-cCCCCCcCCcCccee--EEEEEEEeeCCCCCe-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeCCC
Q 005334 600 VPF-ETASGTWGGVGATST--VKYTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPS 675 (701)
Q Consensus 600 ~~~-~~~~~~~~~~~~~~~--~~~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~ 675 (701)
+.+ +.... .. ++|+|||||||+..+ |+++|+ .|+|++|+|+|++|+|++.+|+++|+|||+......
T Consensus 547 ~~~~~~~~~--------~~~~~~~~Rtvtnvg~~~~~y~~~v~-~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~ 617 (649)
T 3i6s_A 547 ALYSIEGNF--------TLLEQKFKRTVTNVGKGAATYKAKLK-APKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEG 617 (649)
T ss_dssp EEECCSSCC--------CCEEEEEEEEEEECC--CEEEEEEEE-CCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC--
T ss_pred eecccCCCC--------ccceEEEEEEEEEeCCCCcEEEEEEe-cCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCC
Confidence 987 42110 12 899999999999888 999999 999999999999999988999999999999875556
Q ss_pred CCeEEEEEEEEc--CCeEEEeeEEEEeC
Q 005334 676 GTTSFARLQWSD--GKHVVGSPIAFSWT 701 (701)
Q Consensus 676 ~~~~~G~~~~~~--~~~~v~~P~~v~~~ 701 (701)
+.|.||+|+|+| ++|.||+||+|++.
T Consensus 618 ~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 618 QSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp -CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred CceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 678999999998 99999999999863
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-115 Score=1000.34 Aligned_cols=598 Identities=43% Similarity=0.723 Sum_probs=498.0
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecc---------------cCC
Q 005334 67 TTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEA---------------VGP 131 (701)
Q Consensus 67 ~~~s~~~~gl~~~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~---------------~~~ 131 (701)
||++|+|+||+ ..+|.+..+|+||+|||||||||++||+|.|+++.+++.+|+|.|.... .+.
T Consensus 1 tt~s~~flGl~--~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~~n~k~ig~~~~~~~~ 78 (621)
T 3vta_A 1 TTRSWDFLGFP--LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGR 78 (621)
T ss_dssp CCSHHHHTTCC--TTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCCCCSSEEEEEECCCSS
T ss_pred CCCChhHcCCC--ccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcccCcceeeeeecccCC
Confidence 68999999996 4689999999999999999999999999999999999999999983211 111
Q ss_pred ccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCe
Q 005334 132 IDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVN 211 (701)
Q Consensus 132 ~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvd 211 (701)
.....+..+|+|.+||||||||||||+.+.+.+.+|.+.+.++||||+|+|++||+|++.||..+++++||++|+++|+|
T Consensus 79 ~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~~~a~~~g~d 158 (621)
T 3vta_A 79 PISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVD 158 (621)
T ss_dssp SCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHHHHHHHHTCS
T ss_pred ccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHHHHHHHhCCC
Confidence 12233456789999999999999999999888888988899999999999999999999999999999999999999999
Q ss_pred EEEEeccCCC-CCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEE
Q 005334 212 VMSMSIGGGL-TDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSG 290 (701)
Q Consensus 212 VInlSlG~~~-~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g 290 (701)
|||||||+.. ..++.+++++++++|+++||+||+||||+|+...++++.+||+++|++++.+|.|...+.++++..+.+
T Consensus 159 Vin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~~~ 238 (621)
T 3vta_A 159 IISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQG 238 (621)
T ss_dssp EEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEEEE
T ss_pred EEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCceeee
Confidence 9999999865 456678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCceeeEEEcCCCCC----CcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecC
Q 005334 291 VSLYSRRPLSGSMVPIVDAANVSS----TSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTD 366 (701)
Q Consensus 291 ~s~~~~~~~~~~~~~l~~~~~~~~----~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 366 (701)
.+++... ...+++++..+... ......|....+++..++|||++|+++. ..+.......|+.++|++++.
T Consensus 239 ~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~---~~~~~~~~~~Ga~gvi~~~~~ 312 (621)
T 3vta_A 239 VSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF---GPHEFFKSLDGAAGVLMTSNT 312 (621)
T ss_dssp BCCCCSC---CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCC---CHHHHHHHHTTCSEEEEECSC
T ss_pred eecccCC---CcccccccccccccccccccccccccccccccccccceEEEEecCC---ChhHHhhhhcceeEEEEEecC
Confidence 8876543 46778887665432 2345679999999999999999998653 356677788899999998875
Q ss_pred CCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCC
Q 005334 367 SYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGV 446 (701)
Q Consensus 367 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~ 446 (701)
.. ..+.+.+|...++..++..++.|+..+..+.+.+....+. .....+.++.||||||+...+++|||||+|||+
T Consensus 313 ~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~-~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~ 387 (621)
T 3vta_A 313 RD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASAPVVVSFSSRGPNRATKDVIKPDISGPGV 387 (621)
T ss_dssp CS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEE-ECTTCCCBCTTSCCCSCTTCTTSCSCCEEEECS
T ss_pred CC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEe-ccCCCCceeeecCCCCCCCCCCeeccccccCCc
Confidence 43 3456789999999999999999999999888887555444 346789999999999998888999999999999
Q ss_pred cEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCC
Q 005334 447 NILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTG 526 (701)
Q Consensus 447 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~ 526 (701)
+|+++|+....... ..+...|..|||||||||||||+||||||+||+|||++||++||+||++++.. .
T Consensus 388 ~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~---------~ 455 (621)
T 3vta_A 388 EILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNAR---------F 455 (621)
T ss_dssp SEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTT---------T
T ss_pred ceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCccccc---------C
Confidence 99999987543222 23446799999999999999999999999999999999999999999988654 3
Q ss_pred CCCCCCCCCccccCccccCCCCccccCChhhHHhhhhcCCCCcceEEEeecccccccCCCCCCCCCCCCCceEeeccCCC
Q 005334 527 QPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYPSFSVPFETAS 606 (701)
Q Consensus 527 ~~~~~~~~G~G~vn~~~A~~~glv~d~~~~dy~~~lc~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ln~ps~~~~~~~~~ 606 (701)
.++.+|+||+|+|||.+|++||||||++.+||+.|||+++|+.++|+.+++....|.........+||||||++.+....
T Consensus 456 ~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~~v~~~~~~ 535 (621)
T 3vta_A 456 NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQ 535 (621)
T ss_dssp CTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGGSCCSSEEEECCSSC
T ss_pred CCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcccccccccEEEEccCCC
Confidence 45678999999999999999999999999999999999999999999999988889776555678999999999765322
Q ss_pred CCcCCcCcceeEEEEEEEeeCCCCCe-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeCCCCCeEEEEEEE
Q 005334 607 GTWGGVGATSTVKYTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQW 685 (701)
Q Consensus 607 ~~~~~~~~~~~~~~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~ 685 (701)
. .+++|+|||||||+..+ |+++++ .|+|++|+|+|++|+|++.+|+++|+|||+.. ..+.|+||+|+|
T Consensus 536 ~--------~~~t~~rtvtnvg~~~~ty~~~v~-~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~~~g~l~w 604 (621)
T 3vta_A 536 T--------FNQYFNRTLTSVAPQASTYRAMIS-APQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASLVW 604 (621)
T ss_dssp C--------EEEEEEEEEEECSSSCEEEEEEEE-CCSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSEEEEEEEE
T ss_pred c--------eEEEEEEEEEccCCCCeEEEEEEE-CCCCcEEEEecCEEEEcCCCcEEEEEEEEEec--CCCceEEEEEEE
Confidence 1 68999999999999888 999999 99999999999999999899999999999864 567899999999
Q ss_pred EcCCeEEEeeEEEEe
Q 005334 686 SDGKHVVGSPIAFSW 700 (701)
Q Consensus 686 ~~~~~~v~~P~~v~~ 700 (701)
+|++|.|||||+|+.
T Consensus 605 ~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 605 SDGVHYVRSPITITS 619 (621)
T ss_dssp ECSSCCCEEEEEEEC
T ss_pred EcCCEEEEeCEEEEE
Confidence 999999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-82 Score=753.73 Aligned_cols=524 Identities=23% Similarity=0.292 Sum_probs=414.1
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEe-----------------cccCCc----cCCCCC
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYE-----------------EAVGPI----DETAES 138 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~-----------------~~~~~~----~~~~~~ 138 (701)
..+|..+.+|+||+|||||||||++||+|.+. ..|++.|.. .++.++ +.....
T Consensus 7 ~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~ 80 (926)
T 1xf1_A 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG 80 (926)
T ss_dssp HHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCS
T ss_pred HHHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccCC
Confidence 45899899999999999999999999999853 345444310 001111 111122
Q ss_pred CCCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHHcCCeEEEEe
Q 005334 139 KSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG--CFGSDILAGMDKAIEDGVNVMSMS 216 (701)
Q Consensus 139 ~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~ai~~gvdVInlS 216 (701)
. ..|..||||||||||||+.+.+.+. .+.+.||||+|+|++||+|+..+ +...++++||++|+++|+||||||
T Consensus 81 ~-~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~Ai~~gvdVIn~S 155 (926)
T 1xf1_A 81 K-TAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMS 155 (926)
T ss_dssp C-CCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred C-CCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHhCCcEEEEC
Confidence 2 2388999999999999997655432 24569999999999999998876 566789999999999999999999
Q ss_pred ccCCC--CCCccCHHHHHHHHHHHCCCEEEEecCCCCCC-------------CCcccc--CCCceEEecCCccCceeeeE
Q 005334 217 IGGGL--TDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPY-------------ANSISN--VAPWITTVGAGTLDRNFPTY 279 (701)
Q Consensus 217 lG~~~--~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~-------------~~~~~~--~ap~vitVgAst~~~~~~~~ 279 (701)
||+.. ...+.+.++.++++|.++||+||+||||+|+. ..++.+ .+||+|+|||++.++.+...
T Consensus 156 lG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~~~~~~~~~ 235 (926)
T 1xf1_A 156 FGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTET 235 (926)
T ss_dssp CSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEBCSEEEEEE
T ss_pred CCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEeccccccccccc
Confidence 99864 34456788889999999999999999999963 222333 48999999999999999998
Q ss_pred EEc-CCCcEEEEEEeecCCCC-CCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCc
Q 005334 280 VSL-GNGKSFSGVSLYSRRPL-SGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGG 357 (701)
Q Consensus 280 ~~l-~~g~~~~g~s~~~~~~~-~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga 357 (701)
+.+ +++....+.+++....+ ....+++++... .|.+..+ .+++||||+|+|+.|.+.+|..+++++|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~--------g~~~~~~--~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga 305 (926)
T 1xf1_A 236 VRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR--------GTKEDDF--KDVKGKIALIERGDIDFKDKIAKAKKAGA 305 (926)
T ss_dssp EEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT--------SCSTTTT--TTCTTSEEEEECCSSCHHHHHHHHHHTTC
T ss_pred eEEEcCCCcceeeEEEecCCCCCCceEEEEECCC--------CCCccch--hhcCCeEEEEECCCCCHHHHHHHHHhCCC
Confidence 888 67666666666543332 456899998754 3766666 68999999999999999999999999999
Q ss_pred eEEEEeecCCCCccc-cccccccceEEechhhHHHHHHhHhcCCCCeEEEEeccee--ecccCCCceecccCCCCCCCCC
Q 005334 358 VGMILTNTDSYGEEL-VADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQ--LGIQPSPVVAAFSSRGPNPITP 434 (701)
Q Consensus 358 ~g~i~~n~~~~~~~~-~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~a~fSS~GP~~~~~ 434 (701)
.|+|++|+....... ......+|+..++..++..|++ ++.++|.+..+. ......+.++.||||||+. +
T Consensus 306 ~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~------~~~~ti~~~~~~~~~~~~~~~~~a~FSSrGp~~--~ 377 (926)
T 1xf1_A 306 VGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------NPQKTITFNATPKVLPTASGTKLSRFSSWGLTA--D 377 (926)
T ss_dssp SEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH------CSSCEEEECSSCEEEECSSCSBCCTTSCCCBCT--T
T ss_pred cEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh------CCceEEEecccceecccCCcceeccccCCCCCC--C
Confidence 999999986543322 3446789999999999998874 355667666654 4556688999999999996 7
Q ss_pred CCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHH----hhCCCCCHHH----HHHHH
Q 005334 435 EILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLK----AAHPEWSPSA----IKSAL 506 (701)
Q Consensus 435 ~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----~~~P~~sp~~----Ik~~L 506 (701)
+++||||+|||++|+++++++ .|..+||||||||||||+||||+ +.||+|+|+| ||++|
T Consensus 378 ~~lKPDI~APG~~I~sa~~~~-------------~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L 444 (926)
T 1xf1_A 378 GNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVL 444 (926)
T ss_dssp SCBSCCEEEECCCEEESSSCS-------------SSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHH
T ss_pred CccCceEECCCCCEEeeccCC-------------cceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 999999999999999999764 79999999999999999999995 5699999997 99999
Q ss_pred HhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCCCCccccCChhhHHhhhhcCCCCcceEEEeecccccccCCC
Q 005334 507 MTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSK 586 (701)
Q Consensus 507 ~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~glv~d~~~~dy~~~lc~~~~~~~~~~~~~~~~~~c~~~~ 586 (701)
|+||++++..+. ...+++++||+|+||+.+|++|.+ |||..+++..
T Consensus 445 ~~TA~~~~~~~~-------~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~---------------- 490 (926)
T 1xf1_A 445 MSSATALYDEDE-------KAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS---------------- 490 (926)
T ss_dssp HHHSBCCEEGGG-------TEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS----------------
T ss_pred HhcCCCcccCCC-------CccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc----------------
Confidence 999998753321 235678899999999999999855 6787765332
Q ss_pred CCCCCCCCCCceEeeccCCCCCcCCcCcceeEEEEEEEeeCCCCC--e-EEEEEEe-cCCceEEEEeeCeEEEeec----
Q 005334 587 TYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPT--T-YMVSVSS-QSTSVKILVEPESLSFSRQ---- 658 (701)
Q Consensus 587 ~~~~~~ln~ps~~~~~~~~~~~~~~~~~~~~~~~~rtvtnv~~~~--~-y~~~v~~-~p~g~~v~v~p~~l~~~~~---- 658 (701)
+|.+..+ . .+++++|||||+|+.. . |++++.. .|.+..++|+|..|.|...
T Consensus 491 ----------~i~l~~~--~---------~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vt 549 (926)
T 1xf1_A 491 ----------KVHLNNV--S---------DKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKIT 549 (926)
T ss_dssp ----------CEEEEEE--C---------SEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEE
T ss_pred ----------eeecccc--C---------ccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEE
Confidence 2232222 1 4688999999999853 4 8888872 3789999999987776544
Q ss_pred ---ceeEEEEEEEEeee--------CCCCCeEEEEEEEE--cCCeE-EEeeEEEEe
Q 005334 659 ---YEKKSYVVTFTASS--------MPSGTTSFARLQWS--DGKHV-VGSPIAFSW 700 (701)
Q Consensus 659 ---~~~~~~~vt~~~~~--------~~~~~~~~G~~~~~--~~~~~-v~~P~~v~~ 700 (701)
||+++|+|||+... ++.+.|+||+|+|+ +++|. ||+||++..
T Consensus 550 v~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 550 IPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp ECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred ECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 99999999999751 34667899999999 67665 999999863
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-60 Score=533.17 Aligned_cols=341 Identities=29% Similarity=0.471 Sum_probs=273.4
Q ss_pred cccEEEEecceeeEEEEEeCHHHHHHh-----------hcCCCeEEEEeCceeccCCCCC--CcccCCCCCCCCCCCCCC
Q 005334 22 SAAMLYTYKNVIHGFSTRLTAKEAESL-----------QKQPGIVSVLPEVRYELHTTRT--PEFLGLGKSETLFPTSEV 88 (701)
Q Consensus 22 ~~~~~~~y~~~~ng~s~~l~~~~~~~L-----------~~~p~V~~V~~~~~~~~~~~~s--~~~~gl~~~~~~~~~~~~ 88 (701)
..+++|+|+ .|+||+++++++++++| +++|+|++|++++.+++..... ...+...+...+|..+.+
T Consensus 59 g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (539)
T 3afg_A 59 GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYD 137 (539)
T ss_dssp TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBCSCCBCCSCC
T ss_pred CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCcHhHHhcCCC
Confidence 468999997 79999999999999999 8999999999999988754321 111222234678999999
Q ss_pred CCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCccccc
Q 005334 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGF 168 (701)
Q Consensus 89 G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~ 168 (701)
|+||+|||||||||++||+|.++.. + .++. ......+.|.+||||||||||||+....
T Consensus 138 G~gv~VaViDtGid~~Hpdl~~~i~--------~-~~d~-------~~~~~~~~D~~gHGThVAgiiag~~~~~------ 195 (539)
T 3afg_A 138 GSGITIGIIDTGIDASHPDLQGKVI--------G-WVDF-------VNGKTTPYDDNGHGTHVASIAAGTGAAS------ 195 (539)
T ss_dssp CTTCEEEEEESBCCTTSGGGTTTEE--------E-EEET-------TTCCSSCCBSSSHHHHHHHHHHCCCGGG------
T ss_pred CCCcEEEEEecCCCCCChHHhCCEe--------e-eEEC-------CCCCCCCCCCCCCHHHHHHHHhCcCccC------
Confidence 9999999999999999999986521 1 1111 1122357889999999999999974321
Q ss_pred CCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc----CCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEE
Q 005334 169 ASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED----GVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFV 243 (701)
Q Consensus 169 ~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~----gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~v 243 (701)
.|.+.||||+|+|+.+|+++..| +..+++++||+||+++ |++|||||||........+.+..++.+|.++|++|
T Consensus 196 -~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~Gvlv 274 (539)
T 3afg_A 196 -NGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVV 274 (539)
T ss_dssp -TTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEE
T ss_pred -CCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEE
Confidence 23458999999999999998877 7889999999999975 99999999998765556788899999999999999
Q ss_pred EEecCCCCCCCC--ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCcc
Q 005334 244 SCSAGNGGPYAN--SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLC 321 (701)
Q Consensus 244 V~AAGN~G~~~~--~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C 321 (701)
|+||||+|+... ..+..++++|+|||++
T Consensus 275 V~AAGN~g~~~~~~~~Pa~~~~vitVgA~~-------------------------------------------------- 304 (539)
T 3afg_A 275 VVAAGNSGPNKYTVGSPAAASKVITVGAVD-------------------------------------------------- 304 (539)
T ss_dssp EEECCSCCSSSSCCCTTTTCSSSEEEEEEC--------------------------------------------------
T ss_pred EEECCCCCCCCCcccCCccCCceEEEeeec--------------------------------------------------
Confidence 999999998644 3456788999999831
Q ss_pred CCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCC
Q 005334 322 MTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPG 401 (701)
Q Consensus 322 ~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 401 (701)
T Consensus 305 -------------------------------------------------------------------------------- 304 (539)
T 3afg_A 305 -------------------------------------------------------------------------------- 304 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhh
Q 005334 402 PMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481 (701)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 481 (701)
..+.++.||||||+. ++++||||+|||++|+++++..... .+.....|..++|||||||
T Consensus 305 ---------------~~~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~----~~~~~~~y~~~sGTSmAaP 363 (539)
T 3afg_A 305 ---------------KYDVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSM----GQPINDYYTAAPGTAMATP 363 (539)
T ss_dssp ---------------TTSCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCC----SEECSSSEEEECSHHHHHH
T ss_pred ---------------CCcccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCC----CCCCcccccccCchHHHHH
Confidence 112678999999998 6899999999999999998764211 0111235999999999999
Q ss_pred hHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCCCC
Q 005334 482 HVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPG 548 (701)
Q Consensus 482 ~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~g 548 (701)
||||++|||+|++|+|+|++||++|++||++++..+ .+++.||+|+||+.+|++..
T Consensus 364 ~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~~-----------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 364 HVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDE-----------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGGG-----------CSBTTTBTCBCCHHHHHTGG
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC-----------CCccCccCCccCHHHHhhhc
Confidence 999999999999999999999999999999875221 23458999999999999843
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-55 Score=487.46 Aligned_cols=378 Identities=26% Similarity=0.368 Sum_probs=275.9
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
++.+|..+ |+||+|||||||||++||+|.++ .|.+.++ ........+.|..||||||||||+|.
T Consensus 13 ~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-------~~~~~~~-------~~~~~~~~~~d~~gHGT~vAgiia~~ 76 (441)
T 1y9z_A 13 ATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-------NVTGTNN-------SGTGNWYQPGNNNAHGTHVAGTIAAI 76 (441)
T ss_dssp CSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS-------EEEECCC-------TTSCCTTCCCSSCCHHHHHHHHHHCC
T ss_pred hhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC-------cccCccc-------CCCCCCCCCCCCCCcHHHHHHHHhcc
Confidence 35688765 77999999999999999999875 2222211 01112335678899999999999997
Q ss_pred ccCCCcccccCCCceeeecCCC--eEEEEEeecCCC-CChHHHHHHHHHHHHc-CCeEEEEeccCCCCCCccCHHHHHHH
Q 005334 159 VVNGASLFGFASGTARGMAAQA--RVATYKVCWLAG-CFGSDILAGMDKAIED-GVNVMSMSIGGGLTDYYRDTVAIGAF 234 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~g-~~~~~i~~ai~~ai~~-gvdVInlSlG~~~~~~~~d~i~~a~~ 234 (701)
... .| +.||||+| +|+.+|+++..| +..+++++||+||+++ |+||||||||.... ...+..++.
T Consensus 77 ~~~----~g-----~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G~~~~---~~~~~~ai~ 144 (441)
T 1y9z_A 77 ANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGS---TTTERNALN 144 (441)
T ss_dssp CSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSCC---BHHHHHHHH
T ss_pred cCC----CC-----ceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCCCCCCC---CHHHHHHHH
Confidence 521 12 48999995 999999999877 7888999999999999 99999999998532 345666777
Q ss_pred HHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEc-------------------CCCc----EEEEE
Q 005334 235 TAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSL-------------------GNGK----SFSGV 291 (701)
Q Consensus 235 ~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l-------------------~~g~----~~~g~ 291 (701)
+|.++|++||+||||+|+....++...||+|+|||++.+.....+... +++. .+.|.
T Consensus 145 ~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~ 224 (441)
T 1y9z_A 145 THYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQ 224 (441)
T ss_dssp HHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEEEECSTTCEEEEEEEETTE
T ss_pred HHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCeeccccCCCcccceeecccc
Confidence 899999999999999998877888889999999998876542211111 2221 22233
Q ss_pred EeecCCCCCCc-eee--EEEcCCCC---CCcCCCccCCC--CCCCCCccceEEEEecCCC-----chhhhhHHHhHcCce
Q 005334 292 SLYSRRPLSGS-MVP--IVDAANVS---STSSGNLCMTG--SLIPAKVAGKIVVCDRGGN-----SRVEKGVEVKDAGGV 358 (701)
Q Consensus 292 s~~~~~~~~~~-~~~--l~~~~~~~---~~~~~~~C~~~--~~~~~~~~gkiv~~~~g~~-----~~~~~~~~~~~~Ga~ 358 (701)
+++.....+.. .++ +.+..... .......|... .++..+++|||++|+|+.+ .+.+|..+++++|+.
T Consensus 225 s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~ 304 (441)
T 1y9z_A 225 SYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAK 304 (441)
T ss_dssp ECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCS
T ss_pred cccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCe
Confidence 33321110000 000 01111000 00122457543 5677899999999999876 678899999999999
Q ss_pred EEEEeecCCCCcc------ccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCC
Q 005334 359 GMILTNTDSYGEE------LVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPI 432 (701)
Q Consensus 359 g~i~~n~~~~~~~------~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~ 432 (701)
|+|++|+...... .....+.+|.+.++..+|+.|++|+.+. .+
T Consensus 305 gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~t--------------------------- 353 (441)
T 1y9z_A 305 GIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----TT--------------------------- 353 (441)
T ss_dssp EEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----EE---------------------------
T ss_pred EEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----cc---------------------------
Confidence 9999987543111 1233567999999999999999886431 10
Q ss_pred CCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 005334 433 TPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYS 512 (701)
Q Consensus 433 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~ 512 (701)
+ +... ...|..++|||||||||||++|||+|+||+|||++||++||+||++
T Consensus 354 --------~--------~~~~-------------~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~ 404 (441)
T 1y9z_A 354 --------V--------SNQG-------------NQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADD 404 (441)
T ss_dssp --------E--------EEEE-------------EESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBC
T ss_pred --------c--------cccc-------------CCCceeecccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchh
Confidence 0 0111 1379999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccCCCCCCCCCCCCCccccCccccCCCCccccCChhhHHhhhhcCCC
Q 005334 513 TNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDY 567 (701)
Q Consensus 513 ~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~glv~d~~~~dy~~~lc~~~~ 567 (701)
++..+ .+.+||+|+||+.+|+ ||+.|||++++
T Consensus 405 ~~~~g------------~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~ 436 (441)
T 1y9z_A 405 LSVAG------------RDNQTGYGMINAVAAK-----------AYLDESCTGPT 436 (441)
T ss_dssp CSSSS------------CBTTTBTCBCCHHHHH-----------HHHHHCTTCC-
T ss_pred hccCC------------CcccccccccCHHHHH-----------HHHHhhhcCCC
Confidence 86443 2348999999999996 49999999886
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=494.53 Aligned_cols=333 Identities=21% Similarity=0.254 Sum_probs=262.5
Q ss_pred cccEEEEecceeeEEEEEeCHHHHHHhhc-CCCeEEEEeCceeccCCCCCC----------cccCCC---CCCCCCCCCC
Q 005334 22 SAAMLYTYKNVIHGFSTRLTAKEAESLQK-QPGIVSVLPEVRYELHTTRTP----------EFLGLG---KSETLFPTSE 87 (701)
Q Consensus 22 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~-~p~V~~V~~~~~~~~~~~~s~----------~~~gl~---~~~~~~~~~~ 87 (701)
..+++++|. .|++|+++++++++++|++ +|+|++|++++.++++.+... ..|++. ....+|..+.
T Consensus 65 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~ 143 (471)
T 3t41_A 65 SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLP 143 (471)
T ss_dssp TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCC
T ss_pred CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhccC
Confidence 568889996 5999999999999999999 999999999998887543321 123332 2236899999
Q ss_pred CCCCCEEEEEccCCCCCCCCccCCCCCCCCCccc-eeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCccc
Q 005334 88 VQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWK-GVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLF 166 (701)
Q Consensus 88 ~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~ 166 (701)
+|+||+|||||||||++||+|.++..... ..+. +..|.. .......+...+.|..||||||||||||+.
T Consensus 144 ~G~gv~VaViDtGid~~Hp~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~d~~gHGT~vAgiiaa~g------- 213 (471)
T 3t41_A 144 KHANTKIAIIDTGVMKNHDDLKNNFSTDS-KNLVPLNGFRG--TEPEETGDVHDVNDRKGHGTMVSGQTSANG------- 213 (471)
T ss_dssp SSCCCCEEEEESCCCTTCTTTTTTBCTTC-EECCCTTCGGG--CCTTCCCCTTCCCCSSSHHHHHHHHHHCBS-------
T ss_pred CCCCcEEEEEeCCCCCCChhHhcCcccCC-cccccCCCccC--CCcccCCCCCCCcCCCCccchhhheeecCC-------
Confidence 99999999999999999999997532200 0000 000000 001112223357889999999999999863
Q ss_pred ccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCCCC-------------CCccCHHHHHH
Q 005334 167 GFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLT-------------DYYRDTVAIGA 233 (701)
Q Consensus 167 G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~~~-------------~~~~d~i~~a~ 233 (701)
...||||+|+|+.+|+++..++...++++||++|+++|++|||||||.... ....+.+..++
T Consensus 214 -----~~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai 288 (471)
T 3t41_A 214 -----KLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAI 288 (471)
T ss_dssp -----SSBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHH
T ss_pred -----ceeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHH
Confidence 148999999999999998877899999999999999999999999997321 02235677788
Q ss_pred HHHHHCCCEEEEecCCCCCCCCc------------------cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeec
Q 005334 234 FTAMAQGIFVSCSAGNGGPYANS------------------ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYS 295 (701)
Q Consensus 234 ~~a~~~Gi~vV~AAGN~G~~~~~------------------~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~ 295 (701)
..+.++|++||+||||+|..... .+..+|++|+|||++
T Consensus 289 ~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~------------------------ 344 (471)
T 3t41_A 289 NYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTD------------------------ 344 (471)
T ss_dssp HHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEEC------------------------
T ss_pred HHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeC------------------------
Confidence 88999999999999999976532 556778888888732
Q ss_pred CCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccccc
Q 005334 296 RRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVAD 375 (701)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 375 (701)
T Consensus 345 -------------------------------------------------------------------------------- 344 (471)
T 3t41_A 345 -------------------------------------------------------------------------------- 344 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCc--------
Q 005334 376 AQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVN-------- 447 (701)
Q Consensus 376 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~-------- 447 (701)
..+.++.||++||+. |||+|||++
T Consensus 345 -----------------------------------------~~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g 376 (471)
T 3t41_A 345 -----------------------------------------QKSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFG 376 (471)
T ss_dssp -----------------------------------------TTSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHH
T ss_pred -----------------------------------------CCCCCCCccCCCCCC-------CeEEecCCCcccccccc
Confidence 112678999999974 599999987
Q ss_pred --------------EEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCC-CCCHHHHHHHHHhcccc
Q 005334 448 --------------ILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHP-EWSPSAIKSALMTTAYS 512 (701)
Q Consensus 448 --------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~sp~~Ik~~L~~TA~~ 512 (701)
|+++++.+ .|..++|||||||||||++|||+|++| +|+|++||++|++||++
T Consensus 377 ~~~~~~~~~~~~~~i~s~~~~~-------------~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~ 443 (471)
T 3t41_A 377 VDKWMNEGYMHKENILTTANNG-------------RYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTS 443 (471)
T ss_dssp HHHHHHTTTHHHHSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBC
T ss_pred cccccccccccCceeEecCCCC-------------CEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCC
Confidence 88887664 799999999999999999999999999 89999999999999997
Q ss_pred CCCCCcccccCCCCCCCCCCCCCccccCccccCCCC
Q 005334 513 TNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPG 548 (701)
Q Consensus 513 ~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~g 548 (701)
... .+...||||+||+.+|++..
T Consensus 444 ~~~-------------~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 444 KNN-------------KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp CSC-------------CCHHHHTTCBBCHHHHTTTT
T ss_pred CCC-------------CCcCccccChhCHHHHHHHH
Confidence 642 23348999999999999854
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-56 Score=485.31 Aligned_cols=321 Identities=28% Similarity=0.394 Sum_probs=260.4
Q ss_pred cccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceeccCCCCC-----------CcccCCCC--CCCCCCCCCC
Q 005334 22 SAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYELHTTRT-----------PEFLGLGK--SETLFPTSEV 88 (701)
Q Consensus 22 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~~~s-----------~~~~gl~~--~~~~~~~~~~ 88 (701)
..+++++|. .|++|+++++++++++|+++|+|++|++++.++++.... ...|++.. ...+|..+ +
T Consensus 23 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~ 100 (395)
T 2z2z_A 23 GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-D 100 (395)
T ss_dssp TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGGGGGTC-S
T ss_pred CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHHHHhhc-C
Confidence 568999998 599999999999999999999999999999987753221 12233322 35689888 9
Q ss_pred CCC--CEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCccc
Q 005334 89 QSE--VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLF 166 (701)
Q Consensus 89 G~g--VvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~ 166 (701)
|+| |+|||||||||++||+|.++. +.+ ++...+... ....++.|..||||||||||||.. ++ .
T Consensus 101 G~g~~v~VaViDtGid~~Hp~l~~~~-------~~~--~~~~~~~~~--~~~~~~~d~~gHGT~vAgiia~~~-n~---~ 165 (395)
T 2z2z_A 101 GSVSVIQVAVLDTGVDYDHPDLAANI-------AWC--VSTLRGKVS--TKLRDCADQNGHGTHVIGTIAALN-ND---I 165 (395)
T ss_dssp SCCTTCEEEEEESCBCTTCTTTGGGE-------EEE--EECGGGCCB--CCHHHHBCSSSHHHHHHHHHHCCC-SS---S
T ss_pred CCCCcEEEEEEcCCCCCCChhHhhcc-------ccC--ccccCCccc--CCCCCCCCCCCCHHHHHHHHHeec-CC---C
Confidence 999 999999999999999998751 111 111111110 001124688999999999999973 11 1
Q ss_pred ccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc--------------------CCeEEEEeccCCCCCCc
Q 005334 167 GFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED--------------------GVNVMSMSIGGGLTDYY 225 (701)
Q Consensus 167 G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~--------------------gvdVInlSlG~~~~~~~ 225 (701)
| +.||||+|+|+.+|+++..| +..+++++||+||+++ +++|||||||....
T Consensus 166 g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~--- 237 (395)
T 2z2z_A 166 G-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD--- 237 (395)
T ss_dssp S-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSCC---
T ss_pred c-----eEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCCC---
Confidence 2 38999999999999998877 7788999999999998 99999999998532
Q ss_pred cCHHHHHHHHHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceee
Q 005334 226 RDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVP 305 (701)
Q Consensus 226 ~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~ 305 (701)
...+..++.+|.++|++||+||||+|.....++...|++|+|||++
T Consensus 238 ~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~---------------------------------- 283 (395)
T 2z2z_A 238 DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAID---------------------------------- 283 (395)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC----------------------------------
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEec----------------------------------
Confidence 3566777778899999999999999988778888899999999842
Q ss_pred EEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEec
Q 005334 306 IVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVG 385 (701)
Q Consensus 306 l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~ 385 (701)
T Consensus 284 -------------------------------------------------------------------------------- 283 (395)
T 2z2z_A 284 -------------------------------------------------------------------------------- 283 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCc
Q 005334 386 EKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDK 465 (701)
Q Consensus 386 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 465 (701)
..+.++.||+||| +|+|||++|+++++.+
T Consensus 284 -------------------------------~~~~~a~fS~~G~----------~v~APG~~i~s~~~~~---------- 312 (395)
T 2z2z_A 284 -------------------------------SNDNIASFSNRQP----------EVSAPGVDILSTYPDD---------- 312 (395)
T ss_dssp -------------------------------TTSCBCTTSCSSC----------SEEEECSSEEEEETTT----------
T ss_pred -------------------------------CCCCCCcccCCCC----------CEEeCCCCeeeecCCC----------
Confidence 1126789999997 5799999999998764
Q ss_pred ccceeEeeccccchhhhHhHHHHHHHhhCC-------------CCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCC
Q 005334 466 RHVSFNIISGTSMSCPHVSGLAALLKAAHP-------------EWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPF 532 (701)
Q Consensus 466 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-------------~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 532 (701)
.|..++|||||||||||++|||+|++| +|++.+||++|++||+++...+ .++
T Consensus 313 ---~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g------------~~~ 377 (395)
T 2z2z_A 313 ---SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG------------WDA 377 (395)
T ss_dssp ---EEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS------------SBT
T ss_pred ---ceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCC------------CCC
Confidence 799999999999999999999999999 9999999999999999875322 235
Q ss_pred CCCccccCccccCCC
Q 005334 533 DFGAGHVDPVAALDP 547 (701)
Q Consensus 533 ~~G~G~vn~~~A~~~ 547 (701)
.||||+||+.+|++.
T Consensus 378 ~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 378 DYGYGVVRAALAVQA 392 (395)
T ss_dssp TTBTCBCCHHHHHHH
T ss_pred CccCceeCHHHHHHH
Confidence 899999999999874
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-52 Score=472.62 Aligned_cols=350 Identities=28% Similarity=0.323 Sum_probs=260.5
Q ss_pred cccEEEEecceeeEEEEEeCH---H-HHHHhh--cCCCeEEEEeCceeccCC----CC----------------------
Q 005334 22 SAAMLYTYKNVIHGFSTRLTA---K-EAESLQ--KQPGIVSVLPEVRYELHT----TR---------------------- 69 (701)
Q Consensus 22 ~~~~~~~y~~~~ng~s~~l~~---~-~~~~L~--~~p~V~~V~~~~~~~~~~----~~---------------------- 69 (701)
..++++++. .+++++++++. + .+++|+ ++|+|++|+|+..+++.. ..
T Consensus 52 g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (671)
T 1r6v_A 52 NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE 130 (671)
T ss_dssp TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCccccccccccccccccccccccc
Confidence 457888887 79999999864 3 346676 489999999997765431 00
Q ss_pred -CCcccCCCC--CCCC-CCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCC
Q 005334 70 -TPEFLGLGK--SETL-FPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDD 145 (701)
Q Consensus 70 -s~~~~gl~~--~~~~-~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~ 145 (701)
....|++.. +..+ |+. .+|+||+|||||||||++||+|.++. +.+ |+...+.. .....+..|.+
T Consensus 131 ~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTGVd~~HpdL~~~~-------~~g--~~~~~~~~--~p~~~d~~d~~ 198 (671)
T 1r6v_A 131 LSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTGVDGTHPDLEGQV-------IAG--YRPAFDEE--LPAGTDSSYGG 198 (671)
T ss_dssp TGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESCCBTTSGGGTTTB-------CCE--EEGGGTEE--ECTTCBCCTTC
T ss_pred ccccCCchhccCCchhhhhc-cCCCCCEEEEEeCCCCCCCccccccE-------Eec--ccccCCCc--CCCCCCCccCC
Confidence 001233322 2345 877 89999999999999999999998752 222 11111100 01112345678
Q ss_pred CChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecC------CC-CChHHHHHHHHHHHHcCCeEEEEecc
Q 005334 146 GHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWL------AG-CFGSDILAGMDKAIEDGVNVMSMSIG 218 (701)
Q Consensus 146 gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~------~g-~~~~~i~~ai~~ai~~gvdVInlSlG 218 (701)
||||||||||||.. ++ .| +.||||+|+|+.+|+++. .+ .....+++||+||+++|++|||||||
T Consensus 199 gHGThVAGiIAa~~-ng---~g-----v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG 269 (671)
T 1r6v_A 199 SAGTHVAGTIAAKK-DG---KG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWG 269 (671)
T ss_dssp SHHHHHHHHHHCCC-SS---SS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEE
T ss_pred CcchhhhhhhhccC-CC---Cc-----eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 99999999999973 11 12 489999999999999976 22 34567899999999999999999999
Q ss_pred CCCCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCC-CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCC
Q 005334 219 GGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA-NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRR 297 (701)
Q Consensus 219 ~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~ 297 (701)
+.. +...+..++.+|.++|++||+||||+|... ..++...|++|+|||++.+.
T Consensus 270 ~~~---~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g----------------------- 323 (671)
T 1r6v_A 270 GWG---YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG----------------------- 323 (671)
T ss_dssp BSC---CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET-----------------------
T ss_pred CCC---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCC-----------------------
Confidence 843 345677888899999999999999999765 56677889999999842110
Q ss_pred CCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccccccc
Q 005334 298 PLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQ 377 (701)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 377 (701)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T 1r6v_A 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCC
Q 005334 378 LLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVG 457 (701)
Q Consensus 378 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~ 457 (701)
....++.||++||.. ||+|||++|+++++....
T Consensus 324 ---------------------------------------~~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~ 356 (671)
T 1r6v_A 324 ---------------------------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDS 356 (671)
T ss_dssp ---------------------------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTS
T ss_pred ---------------------------------------CceeeccccCCCCCe--------eEEecCCCEEeecCCCCc
Confidence 001478999999976 999999999999876421
Q ss_pred CCC-----CCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCC
Q 005334 458 PTG-----LESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPF 532 (701)
Q Consensus 458 ~~~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 532 (701)
... .........|..++|||||||||||++|||+|++|+|+|.+||++|++||+++...+ .+.
T Consensus 357 ~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g------------~d~ 424 (671)
T 1r6v_A 357 IGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG------------WDH 424 (671)
T ss_dssp TTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS------------CBT
T ss_pred cccccccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC------------CCC
Confidence 100 000112347999999999999999999999999999999999999999999875332 234
Q ss_pred CCCccccCccccCCCCccccCChhhH
Q 005334 533 DFGAGHVDPVAALDPGLVYDATVQDY 558 (701)
Q Consensus 533 ~~G~G~vn~~~A~~~glv~d~~~~dy 558 (701)
.+|||+||+.+|++..|..+....||
T Consensus 425 ~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 425 DTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp TTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred CcccceeCHHHHhhhhcCCCCCccce
Confidence 89999999999999888777655444
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-54 Score=487.87 Aligned_cols=315 Identities=21% Similarity=0.260 Sum_probs=46.4
Q ss_pred HHHHHHHhhccccccccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceeccCCCCCCcccCCCCC------CC
Q 005334 8 HFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYELHTTRTPEFLGLGKS------ET 81 (701)
Q Consensus 8 h~~~~~~~l~~~~~~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~~~s~~~~gl~~~------~~ 81 (701)
|.+++...+.+.....++++.|+++|+||+++++++++++|+++|+|++|++++.++.+. .. |++..+ ..
T Consensus 94 ~~~~l~a~~~~~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~~-~p---WgL~~i~~~~~~~~ 169 (692)
T 2p4e_P 94 TARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQS-IP---WNLERITPPRYRAD 169 (692)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC---------------------
T ss_pred HHHHHHHHHhhcccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccCC-CC---cchhhccccccccc
Confidence 334444433322224689999999999999999999999999999999999999876532 22 444332 23
Q ss_pred CCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccC
Q 005334 82 LFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVN 161 (701)
Q Consensus 82 ~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~ 161 (701)
.|..+.+|+||+|+|||||||++||+|.++.. |.+ |+.... .+.......+.|.+||||||||||+|+.
T Consensus 170 ~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~~--~~~~~d-~dg~~~~~~~~D~~GHGTHVAGiIAg~~-- 238 (692)
T 2p4e_P 170 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VTD--FENVPE-EDGTRFHRQASKCDSHGTHLAGVVSGRD-- 238 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ecc--cccccC-CCCCcccCCCCCCCCcHHHhhhHhhcCC--
Confidence 68788899999999999999999999997631 111 111000 0000011346789999999999999873
Q ss_pred CCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc------CCeEEEEeccCCCCCCccCHHHHHHH
Q 005334 162 GASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED------GVNVMSMSIGGGLTDYYRDTVAIGAF 234 (701)
Q Consensus 162 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~------gvdVInlSlG~~~~~~~~d~i~~a~~ 234 (701)
.||||+|+|+.+|+++..| ++.+++++||+|++++ |++|||||||+.. ...+..++.
T Consensus 239 ------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~----s~~l~~Ai~ 302 (692)
T 2p4e_P 239 ------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY----SRVLNAACQ 302 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC----cHHHHHHHH
Confidence 7999999999999998876 7888999999999986 8999999999753 344555666
Q ss_pred HHHHCCCEEEEecCCCCCCCCc-cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCC
Q 005334 235 TAMAQGIFVSCSAGNGGPYANS-ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVS 313 (701)
Q Consensus 235 ~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~ 313 (701)
+|.++|++||+||||+|..... .+...|++|+|||++.+...
T Consensus 303 ~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~------------------------------------- 345 (692)
T 2p4e_P 303 RLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc-------------------------------------
Confidence 8889999999999999976543 46778999999995322100
Q ss_pred CCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 005334 314 STSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIK 393 (701)
Q Consensus 314 ~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 393 (701)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEee
Q 005334 394 NYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNII 473 (701)
Q Consensus 394 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 473 (701)
...-+.||++|| ||||+|||++|+++++... ..|..+
T Consensus 346 ------------------------a~~ss~fSn~G~--------~vDI~APG~~I~St~~~~~-----------~~y~~~ 382 (692)
T 2p4e_P 346 ------------------------VTLGTLGTNFGR--------CVDLFAPGEDIIGASSDCS-----------TCFVSQ 382 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------cccccccCCCCC--------ceeEEecCCcEEeeccCCC-----------CceEec
Confidence 000123899997 4599999999999987631 268999
Q ss_pred ccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 005334 474 SGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYST 513 (701)
Q Consensus 474 sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~ 513 (701)
+|||||||||||++|||++++|+|+|++||++|++||.+.
T Consensus 383 SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~ 422 (692)
T 2p4e_P 383 SGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD 422 (692)
T ss_dssp ----------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999864
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-51 Score=424.65 Aligned_cols=264 Identities=30% Similarity=0.394 Sum_probs=211.0
Q ss_pred cCCCCC--CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHH
Q 005334 74 LGLGKS--ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151 (701)
Q Consensus 74 ~gl~~~--~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThv 151 (701)
|++..+ ..+|+.+..|+||+|||||||||++||+|.++.. .+ ++. .....++.|..||||||
T Consensus 13 w~l~~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~~~-------~~--~~~-------~~~~~~~~d~~gHGT~v 76 (280)
T 1dbi_A 13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVI-------KG--YDF-------VDNDYDPMDLNNHGTHV 76 (280)
T ss_dssp CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTTEE-------EE--EET-------TTTBSCCCCSSSHHHHH
T ss_pred CChhhcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccCcc-------cc--eec-------cCCCCCCCCCCCcHHHH
Confidence 455443 4689998878899999999999999999987521 11 111 12223467899999999
Q ss_pred HHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHH
Q 005334 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVA 230 (701)
Q Consensus 152 AgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~ 230 (701)
||||+|...+.. | +.||||+|+|+.+|+++..+ +..+++++||++|+++|++|||||||... ....+.
T Consensus 77 Agiia~~~~~~~---g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~---~~~~~~ 145 (280)
T 1dbi_A 77 AGIAAAETNNAT---G-----IAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC---HTTTLE 145 (280)
T ss_dssp HHHHHCCCSSSS---S-----CCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC---CCHHHH
T ss_pred HHHHhCcCCCCC---c-----ceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC---CCHHHH
Confidence 999999753321 2 48999999999999998776 78889999999999999999999999853 345677
Q ss_pred HHHHHHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcC
Q 005334 231 IGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAA 310 (701)
Q Consensus 231 ~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~ 310 (701)
.++.+|.++|++||+||||+|......+...|++|+|||++
T Consensus 146 ~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~--------------------------------------- 186 (280)
T 1dbi_A 146 NAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD--------------------------------------- 186 (280)
T ss_dssp HHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC---------------------------------------
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeC---------------------------------------
Confidence 78888999999999999999987777778889999999832
Q ss_pred CCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHH
Q 005334 311 NVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGD 390 (701)
Q Consensus 311 ~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~ 390 (701)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T 1dbi_A 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCccccee
Q 005334 391 AIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSF 470 (701)
Q Consensus 391 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 470 (701)
..+.++.||++||.. ||+|||++|+++++.+ .|
T Consensus 187 --------------------------~~~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~~-------------~~ 219 (280)
T 1dbi_A 187 --------------------------QYDRLASFSNYGTWV--------DVVAPGVDIVSTITGN-------------RY 219 (280)
T ss_dssp --------------------------TTSCBCTTBCCSTTC--------CEEEECSSEEEEETTT-------------EE
T ss_pred --------------------------CCCCcCCCCCCCCCc--------eEEEecCCeEeecCCC-------------CE
Confidence 112678899999854 9999999999998764 79
Q ss_pred EeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 471 NIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 471 ~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
..++|||||||||||++|||++ |++++.+||++|++||+++... ...||+|+||+.+|++
T Consensus 220 ~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~--------------~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 220 AYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT--------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp EEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB--------------TTTBSSEECCHHHHHT
T ss_pred EEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC--------------CCcccCCEECHHHHhc
Confidence 9999999999999999999987 8999999999999999987521 1379999999999986
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-52 Score=451.26 Aligned_cols=285 Identities=20% Similarity=0.231 Sum_probs=193.1
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecc---------------cC------CccCCCCC
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEA---------------VG------PIDETAES 138 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~---------------~~------~~~~~~~~ 138 (701)
..+|..+..|++|+|||||||||++||+|.+..+.+....|...+.... .+ ......+.
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEAVIPDT 100 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHCTTT
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCccccccccccccccccCCC
Confidence 4589999889999999999999999999998755555555654331000 00 00001122
Q ss_pred CCCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC------CChHHHHHHHHHHHHcCCeE
Q 005334 139 KSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG------CFGSDILAGMDKAIEDGVNV 212 (701)
Q Consensus 139 ~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g------~~~~~i~~ai~~ai~~gvdV 212 (701)
.++.|.+||||||||||||+... .+.||||+|+|+.+|++.... ....+++++|++|++.|++|
T Consensus 101 ~~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~V 170 (357)
T 4h6x_A 101 KDRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANI 170 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCSE
T ss_pred CCCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCCE
Confidence 23456789999999999997422 248999999999999975321 44567899999999999999
Q ss_pred EEEeccCCC-CCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEE
Q 005334 213 MSMSIGGGL-TDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGV 291 (701)
Q Consensus 213 InlSlG~~~-~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~ 291 (701)
||||||... .....+.+..++.++.++|++||+||||+|.....++...|++|+|||++
T Consensus 171 in~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~-------------------- 230 (357)
T 4h6x_A 171 IHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAK-------------------- 230 (357)
T ss_dssp EEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEEC--------------------
T ss_pred EeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEec--------------------
Confidence 999999754 33456778888889999999999999999988778888889999999832
Q ss_pred EeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc
Q 005334 292 SLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE 371 (701)
Q Consensus 292 s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 371 (701)
T Consensus 231 -------------------------------------------------------------------------------- 230 (357)
T 4h6x_A 231 -------------------------------------------------------------------------------- 230 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEec
Q 005334 372 LVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAG 451 (701)
Q Consensus 372 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 451 (701)
..+.++.||+||+.. .||||+|||++|+++
T Consensus 231 ---------------------------------------------~~~~~~~fSn~G~~~-----~~~di~APG~~i~s~ 260 (357)
T 4h6x_A 231 ---------------------------------------------VDGTPCHFSNWGGNN-----TKEGILAPGEEILGA 260 (357)
T ss_dssp ---------------------------------------------TTSSBCTTCC---CT-----TTTEEEEECSSEEEC
T ss_pred ---------------------------------------------cCCcccccccCCCCC-----CccceeecCCCeEec
Confidence 122678899999754 589999999999999
Q ss_pred ccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhh----CCCCCHHHHHHHHHhccccCCCCCcccccCCCCC
Q 005334 452 WTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAA----HPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQ 527 (701)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~ 527 (701)
++.+ ..|..++|||||||||||++|||+++ +|.|+++|||++|++||++++.. .
T Consensus 261 ~~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~----------~ 318 (357)
T 4h6x_A 261 QPCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE----------V 318 (357)
T ss_dssp CTTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC------------------
T ss_pred cCCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC----------C
Confidence 8764 25778999999999999999999954 66899999999999999987532 1
Q ss_pred CCCCCCCCccccCccccCC
Q 005334 528 PSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 528 ~~~~~~~G~G~vn~~~A~~ 546 (701)
...+..||+|+||+.+|++
T Consensus 319 ~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 319 VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp ------CTTCBCCHHHHHH
T ss_pred CCCcccceeEEecHHHHHH
Confidence 2234589999999999987
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=417.97 Aligned_cols=255 Identities=31% Similarity=0.432 Sum_probs=214.1
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
+.+|..+++|+||+|+|||||| .+||+|+.. .+ ++. ......+.|..||||||||||+|..
T Consensus 14 ~~a~~~g~~G~gv~VaViDtGi-~~h~~l~~~---------~~--~~~-------~~~~~~~~d~~gHGT~vAgiia~~~ 74 (269)
T 1gci_A 14 PAAHNRGLTGSGVKVAVLDTGI-STHPDLNIR---------GG--ASF-------VPGEPSTQDGNGHGTHVAGTIAALN 74 (269)
T ss_dssp HHHHHTTCSCTTCEEEEEESCC-CCCTTCCEE---------EE--EEC-------STTCCSCSCSSSHHHHHHHHHHCCC
T ss_pred HHHHhcCCCCCCCEEEEECCCC-CCCHhhccc---------CC--ccc-------CCCCCCCCCCCCChHHHHHHHhcCc
Confidence 4589999999999999999999 899999421 01 111 1112236788999999999999973
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMA 238 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~ 238 (701)
. ..| +.|+||+|+|+.+|+++..+ +..+++++||+||++++++|||||||.... ...+..++.++.+
T Consensus 75 ~----~~~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~ 142 (269)
T 1gci_A 75 N----SIG-----VLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSP---SATLEQAVNSATS 142 (269)
T ss_dssp S----SSB-----CCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSSC---CHHHHHHHHHHHH
T ss_pred C----CCC-----cEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHHHHHHHHHHH
Confidence 1 112 48999999999999998766 678899999999999999999999998542 3567777888999
Q ss_pred CCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCC
Q 005334 239 QGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSG 318 (701)
Q Consensus 239 ~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (701)
+|++||+||||+|.....++...|++|+|||.+
T Consensus 143 ~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~----------------------------------------------- 175 (269)
T 1gci_A 143 RGVLVVAASGNSGAGSISYPARYANAMAVGATD----------------------------------------------- 175 (269)
T ss_dssp TTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC-----------------------------------------------
T ss_pred CCCEEEEecCCCCCCCCcCCccCCCeEEEEeec-----------------------------------------------
Confidence 999999999999988777888889999999832
Q ss_pred CccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhc
Q 005334 319 NLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISS 398 (701)
Q Consensus 319 ~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 398 (701)
T Consensus 176 -------------------------------------------------------------------------------- 175 (269)
T 1gci_A 176 -------------------------------------------------------------------------------- 175 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccc
Q 005334 399 DPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSM 478 (701)
Q Consensus 399 ~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 478 (701)
..+.++.||++||.. ||+|||++|+++++.. .|..++||||
T Consensus 176 ------------------~~~~~~~~S~~G~~~--------di~APG~~i~s~~~~~-------------~~~~~sGTS~ 216 (269)
T 1gci_A 176 ------------------QNNNRASFSQYGAGL--------DIVAPGVNVQSTYPGS-------------TYASLNGTSM 216 (269)
T ss_dssp ------------------TTSCBCTTCCCSTTE--------EEEEECSSEEEEETTT-------------EEEEECSHHH
T ss_pred ------------------CCCCCCCCCCCCCCc--------ceEecCCCeEeecCCC-------------CEEEcCcHHH
Confidence 112568899999865 9999999999998764 7999999999
Q ss_pred hhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 479 SCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 479 AaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
|||||||++|||+|++|+|++.+||++|++||+++. .++.||+|+||+.+|++
T Consensus 217 AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g---------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 217 ATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS---------------CHHHHTTCBCCHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC---------------CCCCcccCccCHHHHcC
Confidence 999999999999999999999999999999999874 12489999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=420.08 Aligned_cols=256 Identities=29% Similarity=0.412 Sum_probs=212.0
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
..+|..+++|+||+|+|||||||++||+|+.. .+. +. ......+.|..||||||||||+|..
T Consensus 14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~~~---------~g~--~~-------~~~~~~~~d~~gHGT~vAgiia~~~ 75 (274)
T 1r0r_E 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNVV---------GGA--SF-------VAGEAYNTDGNGHGTHVAGTVAALD 75 (274)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE---------EEE--EC-------STTCCTTCCSSSHHHHHHHHHHCCS
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCCHhHcCC---------CCc--cc-------cCCCCCCCCCCCCHHHHHHHHHccC
Confidence 45899999999999999999999999999421 111 11 1112235788999999999999973
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMA 238 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~ 238 (701)
. .. .+.||||+|+|+.+|+++..+ +..+++++||+||++++++|||||||.... ...+..++.++.+
T Consensus 76 ~----~~-----g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~ 143 (274)
T 1r0r_E 76 N----TT-----GVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG---STAMKQAVDNAYA 143 (274)
T ss_dssp S----SS-----BCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSSC---CHHHHHHHHHHHH
T ss_pred C----CC-----ceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCCC---cHHHHHHHHHHHH
Confidence 1 11 248999999999999998776 678899999999999999999999998542 4567778888999
Q ss_pred CCCEEEEecCCCCCCC----CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCC
Q 005334 239 QGIFVSCSAGNGGPYA----NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSS 314 (701)
Q Consensus 239 ~Gi~vV~AAGN~G~~~----~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~ 314 (701)
+|++||+||||+|... ..++...|++|+|||.+
T Consensus 144 ~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~------------------------------------------- 180 (274)
T 1r0r_E 144 RGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD------------------------------------------- 180 (274)
T ss_dssp TTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC-------------------------------------------
T ss_pred CCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEec-------------------------------------------
Confidence 9999999999999763 34566778889988731
Q ss_pred CcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHH
Q 005334 315 TSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKN 394 (701)
Q Consensus 315 ~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 394 (701)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T 1r0r_E 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeec
Q 005334 395 YISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIIS 474 (701)
Q Consensus 395 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 474 (701)
..+.++.||++||. |||+|||++|+++++.+ .|..++
T Consensus 181 ----------------------~~~~~~~~S~~G~~--------~di~APG~~i~s~~~~~-------------~~~~~s 217 (274)
T 1r0r_E 181 ----------------------SNSNRASFSSVGAE--------LEVMAPGAGVYSTYPTN-------------TYATLN 217 (274)
T ss_dssp ----------------------TTSCBCTTCCCSTT--------EEEEEECSSEEEEETTT-------------EEEEEC
T ss_pred ----------------------CCCCcCccCCCCCC--------ceEEeCCCCeEeecCCC-------------CEEEec
Confidence 11266889999985 49999999999998764 799999
Q ss_pred cccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 475 GTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 475 GTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
|||||||||||++|||+|++|+|++.+||++|++||+++. +++.||+|+||+.+|++
T Consensus 218 GTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g---------------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 218 GTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG---------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp SHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS---------------CHHHHTTCBCCHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC---------------CCCCcccCccCHHHHhC
Confidence 9999999999999999999999999999999999999873 12489999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-50 Score=418.95 Aligned_cols=258 Identities=31% Similarity=0.457 Sum_probs=212.8
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
..+|..+++|+||+|||||||||++||+|+.. .+ ++... .......|..||||||||||+|..
T Consensus 14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~~~---------~g--~~~~~------~~~~~~~d~~gHGT~vAgiia~~~ 76 (281)
T 1to2_E 14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA---------GG--ASMVP------SETNPFQDNNSHGTHVAGTVAALN 76 (281)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE---------EE--EECCT------TCCCTTCCSSSHHHHHHHHHHCCS
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCCHHHcCc---------CC--ccccC------CCCCCCCCCCCcHHHHHHHHhccC
Confidence 45899999999999999999999999999531 11 11110 111123688999999999999973
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMA 238 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~ 238 (701)
. ..| +.||||+|+|+.+|+++..+ +..++++++|+||++++++|||||||.... ...+..++.++.+
T Consensus 77 ~----~~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~ 144 (281)
T 1to2_E 77 N----SIG-----VLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSG---SAALKAAVDKAVA 144 (281)
T ss_dssp S----SSS-----BCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSCC---CHHHHHHHHHHHH
T ss_pred C----CCc-----ceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCCCC---CHHHHHHHHHHHH
Confidence 1 112 48999999999999998776 678899999999999999999999998542 4567778888999
Q ss_pred CCCEEEEecCCCCCCC----CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCC
Q 005334 239 QGIFVSCSAGNGGPYA----NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSS 314 (701)
Q Consensus 239 ~Gi~vV~AAGN~G~~~----~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~ 314 (701)
+|++||+||||+|... ..++...|++|+|||..
T Consensus 145 ~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~------------------------------------------- 181 (281)
T 1to2_E 145 SGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD------------------------------------------- 181 (281)
T ss_dssp TTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC-------------------------------------------
T ss_pred CCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEec-------------------------------------------
Confidence 9999999999999762 34566778889998731
Q ss_pred CcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHH
Q 005334 315 TSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKN 394 (701)
Q Consensus 315 ~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 394 (701)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T 1to2_E 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeec
Q 005334 395 YISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIIS 474 (701)
Q Consensus 395 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 474 (701)
..+.++.||++||.. ||+|||++|+++++.+ .|..++
T Consensus 182 ----------------------~~~~~~~fS~~G~~~--------di~APG~~i~s~~~~~-------------~~~~~s 218 (281)
T 1to2_E 182 ----------------------SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYN 218 (281)
T ss_dssp ----------------------TTSCBCTTCCCSTTC--------CEEEECSSEEEEETTT-------------EEEEEC
T ss_pred ----------------------CCCCcCCcCCCCCCc--------eEEecCCCeEeecCCC-------------CEEecC
Confidence 112668899999854 9999999999998764 799999
Q ss_pred cccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCCC
Q 005334 475 GTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDP 547 (701)
Q Consensus 475 GTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~ 547 (701)
|||||||||||++|||+|++|+|++++||++|++||+++. +++.||||+||+.+|+++
T Consensus 219 GTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g---------------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG---------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp BHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS---------------CHHHHTTCBCCHHHHTSS
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC---------------CCCCcccceecHHHHhhh
Confidence 9999999999999999999999999999999999999873 234899999999999985
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=415.70 Aligned_cols=257 Identities=27% Similarity=0.407 Sum_probs=214.2
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
..+|+.. +|+||+|||||||||++||+|.++.. .+ ++. ......+.|..||||||||||+|..
T Consensus 21 ~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~~~-------~~--~~~-------~~~~~~~~d~~gHGT~vAgiia~~~ 83 (279)
T 1thm_A 21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVV-------GG--WDF-------VDNDSTPQNGNGHGTHCAGIAAAVT 83 (279)
T ss_dssp HHHHTTC-CCTTCEEEEEESCCCTTCTTTTTTEE-------EE--EET-------TTTBSCCCCSSSHHHHHHHHHHCCC
T ss_pred HHHHhcC-CCCCCEEEEEccCCCCCCcchhcCcc-------cc--ccc-------cCCCCCCCCCCCcHHHHHHHHhCcc
Confidence 4588876 69999999999999999999987521 11 111 1222346789999999999999975
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMA 238 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~ 238 (701)
.++. | +.|+||+|+|+.+|+++..+ ++..++++||++|+++|++|||||||... ..+.+..++.+|.+
T Consensus 84 ~n~~---g-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~---~~~~l~~ai~~a~~ 152 (279)
T 1thm_A 84 NNST---G-----IAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV---GNSGLQQAVNYAWN 152 (279)
T ss_dssp SSSS---S-----CCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS---CCHHHHHHHHHHHH
T ss_pred CCCC---c-----cEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCC---CCHHHHHHHHHHHH
Confidence 4321 2 38999999999999998776 77889999999999999999999999853 24567778888999
Q ss_pred CCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCC
Q 005334 239 QGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSG 318 (701)
Q Consensus 239 ~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (701)
+|++||+||||+|.....++...|++|+|||++
T Consensus 153 ~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~----------------------------------------------- 185 (279)
T 1thm_A 153 KGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD----------------------------------------------- 185 (279)
T ss_dssp TTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC-----------------------------------------------
T ss_pred CCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeC-----------------------------------------------
Confidence 999999999999987777888889999999832
Q ss_pred CccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhc
Q 005334 319 NLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISS 398 (701)
Q Consensus 319 ~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 398 (701)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 1thm_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccc
Q 005334 399 DPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSM 478 (701)
Q Consensus 399 ~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 478 (701)
..+.++.||++||.. ||+|||++|+++++.. .|..++||||
T Consensus 186 ------------------~~~~~~~fS~~G~~~--------dv~APG~~i~s~~~~~-------------~~~~~sGTS~ 226 (279)
T 1thm_A 186 ------------------QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPTS-------------TYASLSGTSM 226 (279)
T ss_dssp ------------------TTSCBCTTCCCCTTC--------CEEEECSSEEEEETTT-------------EEEEECSHHH
T ss_pred ------------------CCCCcCCcCCCCCce--------EEEEcCCCeEEEeCCC-------------CEEEcccHHH
Confidence 112567899999864 9999999999998764 7999999999
Q ss_pred hhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 479 SCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 479 AaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
|||||||++||| ++|.+++++||++|++||+++...+ ..||+|+||+.+|++
T Consensus 227 AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~--------------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 227 ATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG--------------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp HHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT--------------TTBSSEECCHHHHHH
T ss_pred HHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC--------------ccccCCeeCHHHHhc
Confidence 999999999999 5799999999999999999875321 279999999999975
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=421.27 Aligned_cols=264 Identities=22% Similarity=0.274 Sum_probs=208.7
Q ss_pred CCCC-CCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCc
Q 005334 86 SEVQ-SEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGAS 164 (701)
Q Consensus 86 ~~~G-~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~ 164 (701)
..+| +||+|||||||||++||+|.++... +. .. ..........|.+||||||||||+|+...
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~~~-------~~--~~-----~~~~~~~~d~~~~gHGT~VAGiiag~~~~--- 65 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGADLT-------VL--PT-----LAPTAARSDGFMSAHGTHVASIIFGQPET--- 65 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCEEE-------EC--CC-----SSCCCCCTTCHHHHHHHHHHHHHHCCTTS---
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCeee-------cC--cC-----CCCCCCCCCCCCCCcccceeehhhccCCc---
Confidence 3578 6999999999999999999875211 11 00 00111122334578999999999987422
Q ss_pred ccccCCCceeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHHcCCeEEEEeccCCC-CCCccCHHHHHHHHHHHCCC
Q 005334 165 LFGFASGTARGMAAQARVATYKVCWLAG--CFGSDILAGMDKAIEDGVNVMSMSIGGGL-TDYYRDTVAIGAFTAMAQGI 241 (701)
Q Consensus 165 ~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~ai~~gvdVInlSlG~~~-~~~~~d~i~~a~~~a~~~Gi 241 (701)
.+.||||+|+|+.+|++.+.+ ....+++++|+||++++++|||||||... .......+..++..+.++|+
T Consensus 66 -------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gi 138 (282)
T 3zxy_A 66 -------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENAVSLCRQNNV 138 (282)
T ss_dssp -------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHHHHHHHHHHHHTTC
T ss_pred -------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccccccHHHHHHHHHHhhcCc
Confidence 248999999999999986543 67788999999999999999999999754 22334567777888999999
Q ss_pred EEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCcc
Q 005334 242 FVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLC 321 (701)
Q Consensus 242 ~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C 321 (701)
++|+||||+|......+...|++|+|||.+
T Consensus 139 ~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~-------------------------------------------------- 168 (282)
T 3zxy_A 139 LLVAAAGNNGCDCLHVPAALPAVLAVGAMD-------------------------------------------------- 168 (282)
T ss_dssp EEEEECCSSCSSCEEETTTSTTCEEEEEEC--------------------------------------------------
T ss_pred eEEEecccCCCccccCccccceeEEEEEEc--------------------------------------------------
Confidence 999999999988878888899999999832
Q ss_pred CCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCC
Q 005334 322 MTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPG 401 (701)
Q Consensus 322 ~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 401 (701)
T Consensus 169 -------------------------------------------------------------------------------- 168 (282)
T 3zxy_A 169 -------------------------------------------------------------------------------- 168 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhh
Q 005334 402 PMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481 (701)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 481 (701)
..+.++.||+||+.. .||||+|||++|+++++.+ .|..++|||||||
T Consensus 169 ---------------~~~~~~~~S~~~~~~-----~~~di~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP 215 (282)
T 3zxy_A 169 ---------------DHGHPLDFSNWGSTY-----EQQGILAPGEDILGAKPGG-------------GTERLSGTAFATP 215 (282)
T ss_dssp ---------------TTSCBCSSSCCCHHH-----HHHEEEEECSSEEEECTTS-------------CEEEECSHHHHHH
T ss_pred ---------------CCCccccccCCCCCc-----cccceeccCcceeeecCCC-------------ceeecCCCcccch
Confidence 112567889998753 5889999999999998764 7999999999999
Q ss_pred hHhHHHHHHHhhC----CCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 482 HVSGLAALLKAAH----PEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 482 ~VAG~aALl~~~~----P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
||||++|||++++ |.++|++||++|++||++++.. .+.....+|+|+||+.+|++
T Consensus 216 ~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~----------~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 216 IVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD----------APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC-----------------CGGGTTCBCCHHHHHH
T ss_pred HHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC----------CCCccCceeeeEeCHHHHHH
Confidence 9999999999874 7899999999999999977532 22334589999999999986
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-50 Score=427.61 Aligned_cols=264 Identities=24% Similarity=0.326 Sum_probs=210.3
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
+..+|..+++|+||+|||||||||++||+|.++.. .+..+.... ........|..||||||||||+|+
T Consensus 30 ~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~~~-------~~~~~~~~~-----~~~~~~~~d~~gHGT~VAgiia~~ 97 (327)
T 2x8j_A 30 APAVWRASAKGAGQIIGVIDTGCQVDHPDLAERII-------GGVNLTTDY-----GGDETNFSDNNGHGTHVAGTVAAA 97 (327)
T ss_dssp HHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGGEE-------EEEECSSGG-----GGCTTCCCCSSSHHHHHHHHHHCC
T ss_pred hHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhccc-------CCccccCCC-----CCCCCCCCCCCCchHHHHHHHhcc
Confidence 35689999999999999999999999999987521 111111110 011223578899999999999997
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHH------cCCeEEEEeccCCCCCCccCHHHH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIE------DGVNVMSMSIGGGLTDYYRDTVAI 231 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~------~gvdVInlSlG~~~~~~~~d~i~~ 231 (701)
.. + .| +.||||+|+|+.+|+++..+ +..+++++||+||++ .+++|||||||... ....+..
T Consensus 98 ~~-~---~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ 165 (327)
T 2x8j_A 98 ET-G---SG-----VVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPT---DSEELHD 165 (327)
T ss_dssp CC-S---SB-----CCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCCSEEEECEEBSC---CCHHHHH
T ss_pred CC-C---CC-----cEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCceEEEECCCcCC---CCHHHHH
Confidence 31 1 12 48999999999999998776 778899999999999 89999999999853 2456777
Q ss_pred HHHHHHHCCCEEEEecCCCCCCC-----CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeE
Q 005334 232 GAFTAMAQGIFVSCSAGNGGPYA-----NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPI 306 (701)
Q Consensus 232 a~~~a~~~Gi~vV~AAGN~G~~~-----~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l 306 (701)
++.+|.++|++||+||||+|... ...+...|++|+|||++
T Consensus 166 ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~----------------------------------- 210 (327)
T 2x8j_A 166 AVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVD----------------------------------- 210 (327)
T ss_dssp HHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEEC-----------------------------------
T ss_pred HHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEEC-----------------------------------
Confidence 88889999999999999999752 35566788999999842
Q ss_pred EEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEech
Q 005334 307 VDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGE 386 (701)
Q Consensus 307 ~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~ 386 (701)
T Consensus 211 -------------------------------------------------------------------------------- 210 (327)
T 2x8j_A 211 -------------------------------------------------------------------------------- 210 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcc
Q 005334 387 KAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKR 466 (701)
Q Consensus 387 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 466 (701)
..+.++.||++||. |||+|||++|+++++.+
T Consensus 211 ------------------------------~~~~~~~fS~~G~~--------~di~APG~~i~s~~~~~----------- 241 (327)
T 2x8j_A 211 ------------------------------FDLRLSDFTNTNEE--------IDIVAPGVGIKSTYLDS----------- 241 (327)
T ss_dssp ------------------------------TTCCBSCC---CCC--------CSEEEECSSEEEECSTT-----------
T ss_pred ------------------------------CCCCCCCccCCCCC--------ceEecCcCceEeecCCC-----------
Confidence 11267889999984 59999999999998764
Q ss_pred cceeEeeccccchhhhHhHHHHHHHhh-----CCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCc
Q 005334 467 HVSFNIISGTSMSCPHVSGLAALLKAA-----HPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDP 541 (701)
Q Consensus 467 ~~~y~~~sGTSmAaP~VAG~aALl~~~-----~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~ 541 (701)
.|..++|||||||||||++|||+|+ +|.|++.+||++|++||+++.. +++.+|+|+||+
T Consensus 242 --~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~--------------~~~~~G~G~vd~ 305 (327)
T 2x8j_A 242 --GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF--------------TAQAEGNGFLTL 305 (327)
T ss_dssp --CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS--------------CHHHHTTCEECT
T ss_pred --CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC--------------CCCceeeeEECH
Confidence 7999999999999999999999999 9999999999999999998741 234899999999
Q ss_pred cccCC
Q 005334 542 VAALD 546 (701)
Q Consensus 542 ~~A~~ 546 (701)
.+|++
T Consensus 306 ~~A~~ 310 (327)
T 2x8j_A 306 DLVER 310 (327)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99998
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=413.97 Aligned_cols=283 Identities=27% Similarity=0.349 Sum_probs=220.1
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
+..+|..+.+|+||+|||||||||++||+|.++.. . +++.... .........|..||||||||||+|.
T Consensus 15 ~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~~~-------~--~~~~~~~---~~~~~~~~~d~~gHGT~vAgiia~~ 82 (310)
T 2ixt_A 15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVE-------Q--CKDFTGA---TTPINNSCTDRNGHGTHVAGTALAD 82 (310)
T ss_dssp TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTTEE-------E--EEESSSS---SSCEETCCCCSSSHHHHHHHHHHCB
T ss_pred chhhhhccCCCCCcEEEEEecCCCCCCHHHhhccc-------c--cccccCC---CCCCCCCCCCCCCCHHHHHHHHhcc
Confidence 46799999999999999999999999999987521 1 1111111 0011123578899999999999998
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCC-----eEEEEeccCCCCCCccCHHHHH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGV-----NVMSMSIGGGLTDYYRDTVAIG 232 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gv-----dVInlSlG~~~~~~~~d~i~~a 232 (701)
...+ ...+.||||+|+|+.+|+++..+ +..+++++||+||+++++ +|||||||.... ...+..+
T Consensus 83 ~~~n-------~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S~G~~~~---~~~~~~a 152 (310)
T 2ixt_A 83 GGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSAN---NSLISSA 152 (310)
T ss_dssp CCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSSC---CHHHHHH
T ss_pred CCCC-------CCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEEEEcCCCCCC---CHHHHHH
Confidence 5221 12248999999999999998776 678899999999999988 999999998542 4567777
Q ss_pred HHHHHHCCCEEEEecCCCCCC--CCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcC
Q 005334 233 AFTAMAQGIFVSCSAGNGGPY--ANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAA 310 (701)
Q Consensus 233 ~~~a~~~Gi~vV~AAGN~G~~--~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~ 310 (701)
+.++.++|++||+||||+|.. ....+...|++|+|||.+....
T Consensus 153 i~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~----------------------------------- 197 (310)
T 2ixt_A 153 VNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ----------------------------------- 197 (310)
T ss_dssp HHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE-----------------------------------
T ss_pred HHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc-----------------------------------
Confidence 788999999999999999976 3456677899999998421000
Q ss_pred CCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHH
Q 005334 311 NVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGD 390 (701)
Q Consensus 311 ~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~ 390 (701)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCC----CCCCCCcEEecCCcEEecccCCCCCCCCCCCcc
Q 005334 391 AIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPIT----PEILKPDLIAPGVNILAGWTGAVGPTGLESDKR 466 (701)
Q Consensus 391 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~----~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 466 (701)
.....++.||++||.... ..+.||||+|||++|+++++.+
T Consensus 198 -------------------------~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s~~~~~----------- 241 (310)
T 2ixt_A 198 -------------------------NGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG----------- 241 (310)
T ss_dssp -------------------------TTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEEECTTS-----------
T ss_pred -------------------------CCCeeeccccCCCCccCCccccccCCCeeEECCCCCEeeecCCC-----------
Confidence 000156789999995421 1345999999999999998754
Q ss_pred cceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCc
Q 005334 467 HVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDP 541 (701)
Q Consensus 467 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~ 541 (701)
.|..++|||||||||||++|||+|++|+|++.+||++|++||++.+..+. ....+..++.+|||++|+
T Consensus 242 --~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~-----~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 242 --GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG-----YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp --SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS-----TTCCSSSBTTTBTCBCCC
T ss_pred --CEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC-----cccccCCccccccceeec
Confidence 79999999999999999999999999999999999999999998864321 112455667999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-49 Score=418.02 Aligned_cols=265 Identities=30% Similarity=0.415 Sum_probs=214.8
Q ss_pred CCCCCCCCCCCC--CCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhc
Q 005334 79 SETLFPTSEVQS--EVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAA 156 (701)
Q Consensus 79 ~~~~~~~~~~G~--gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaA 156 (701)
+..+|..+ +|+ ||+|||||||||++||+|.++. +.+ ++...+.. ........|..||||||||||+
T Consensus 17 ~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~~-------~~~--~~~~~~~~--~~~~~~~~d~~gHGT~vAgiia 84 (320)
T 2z30_A 17 APSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAANI-------AWC--VSTLRGKV--STKLRDCADQNGHGTHVIGTIA 84 (320)
T ss_dssp CGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGGE-------EEE--EECGGGCC--BCCHHHHBCSSSHHHHHHHHHH
T ss_pred hHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhccc-------ccC--ccccCCcc--CCCCCCCCCCCCCHHHHHHHHH
Confidence 35689988 899 9999999999999999998751 111 11111100 0011123678999999999999
Q ss_pred ccccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc--------------------CCeEEEE
Q 005334 157 GSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED--------------------GVNVMSM 215 (701)
Q Consensus 157 G~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~--------------------gvdVInl 215 (701)
|.. ++ .| +.||||+|+|+.+|+++..| +..++++++|+||+++ +++||||
T Consensus 85 ~~~-n~---~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~ 155 (320)
T 2z30_A 85 ALN-ND---IG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISM 155 (320)
T ss_dssp CCS-SS---BS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEE
T ss_pred ccc-CC---Cc-----eEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCcccccccccccccccccccCCceEEEe
Confidence 972 11 12 38999999999999998776 7788999999999987 9999999
Q ss_pred eccCCCCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeec
Q 005334 216 SIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYS 295 (701)
Q Consensus 216 SlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~ 295 (701)
|||.... ...+..++.+|.++|++||+||||+|.....++...|++|+|||.+
T Consensus 156 S~G~~~~---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~------------------------ 208 (320)
T 2z30_A 156 SLGGPAD---DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAID------------------------ 208 (320)
T ss_dssp CEEBSCC---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC------------------------
T ss_pred cCCCCCC---CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeC------------------------
Confidence 9998542 4556777778999999999999999988777888899999999832
Q ss_pred CCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccccc
Q 005334 296 RRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVAD 375 (701)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 375 (701)
T Consensus 209 -------------------------------------------------------------------------------- 208 (320)
T 2z30_A 209 -------------------------------------------------------------------------------- 208 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCC
Q 005334 376 AQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGA 455 (701)
Q Consensus 376 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 455 (701)
..+.++.||++|| +|+|||++|+++++..
T Consensus 209 -----------------------------------------~~~~~~~~S~~g~----------~v~APG~~i~s~~~~~ 237 (320)
T 2z30_A 209 -----------------------------------------SNDNIASFSNRQP----------EVSAPGVDILSTYPDD 237 (320)
T ss_dssp -----------------------------------------TTSCBCTTSCSSC----------SEEEECSSEEEEETTT
T ss_pred -----------------------------------------CCCCcCcccCCCC----------CEEeCCCCeEEeccCC
Confidence 1126678999986 7899999999998764
Q ss_pred CCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhC-------------CCCCHHHHHHHHHhccccCCCCCccccc
Q 005334 456 VGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAH-------------PEWSPSAIKSALMTTAYSTNGNGKTLLD 522 (701)
Q Consensus 456 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-------------P~~sp~~Ik~~L~~TA~~~~~~g~~~~~ 522 (701)
.|..++|||||||||||++|||+|++ |+|++.+||++|++||+++...+
T Consensus 238 -------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~g----- 299 (320)
T 2z30_A 238 -------------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG----- 299 (320)
T ss_dssp -------------EEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSSS-----
T ss_pred -------------CeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCccCCCCC-----
Confidence 79999999999999999999999999 99999999999999999874322
Q ss_pred CCCCCCCCCCCCCccccCccccCCC
Q 005334 523 ISTGQPSTPFDFGAGHVDPVAALDP 547 (701)
Q Consensus 523 ~~~~~~~~~~~~G~G~vn~~~A~~~ 547 (701)
....+|||+||+.+|++.
T Consensus 300 -------~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 300 -------WDADYGYGVVRAALAVQA 317 (320)
T ss_dssp -------SBTTTBTCBCCHHHHHHH
T ss_pred -------CCCCcCCceeCHHHHHHH
Confidence 234899999999999873
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=459.96 Aligned_cols=406 Identities=19% Similarity=0.193 Sum_probs=265.4
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEec-ccCCccCCCC---CCCCCCCCCChhHHHHhhcccccCCCccc
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEE-AVGPIDETAE---SKSPRDDDGHGTHTSTTAAGSVVNGASLF 166 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~---~~~~~D~~gHGThvAgiaAG~~~~~~~~~ 166 (701)
+|+|||||||++++|++.....-......|. ++.. .....+..++ .....|.+||||||||||||.. ++
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l~~Y~~~~dyg--~F~D~v~~~~n~~Ddgd~~~~v~D~~GHGThVAGIIAa~~-N~---- 286 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRIGEYSRTHETR--NVDDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNH-SS---- 286 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEEECTTTTCCCC--EESSSCEEEEEEEGGGTEEEEEECCCHHHHHHHHHHCCCC-SS----
T ss_pred CEEEEEEeCCCCCCccccccccccccccccc--ccccccCCCCccCCCCCccccCCCCCCcHHHHHHHHhcCC-CC----
Confidence 6999999999988776643110000000110 0000 0000010111 1112478899999999999985 22
Q ss_pred ccCCCceeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHH-----cCCeEEEEeccCCCCCCccCHHHHHHHHHH-
Q 005334 167 GFASGTARGMAAQARVATYKVCWLAG---CFGSDILAGMDKAIE-----DGVNVMSMSIGGGLTDYYRDTVAIGAFTAM- 237 (701)
Q Consensus 167 G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~ai~-----~gvdVInlSlG~~~~~~~~d~i~~a~~~a~- 237 (701)
..+.||||+|+|+.+|+++..+ ....+++++|.+|++ .|++|||||||........+.+..++.+|.
T Consensus 287 ----~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~~~~~~~~l~~aI~~A~~ 362 (1354)
T 3lxu_X 287 ----RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVN 362 (1354)
T ss_dssp ----SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCCSCSSCCHHHHHHHHHHH
T ss_pred ----CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCCCCCccHHHHHHHHHHHH
Confidence 2248999999999999997653 355778888888887 799999999999764344567777777776
Q ss_pred HCCCEEEEecCCCCCCCCc--ccc--CCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCC
Q 005334 238 AQGIFVSCSAGNGGPYANS--ISN--VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVS 313 (701)
Q Consensus 238 ~~Gi~vV~AAGN~G~~~~~--~~~--~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~ 313 (701)
++|++||+||||+|+...+ .+. .++++|+|||++..........
T Consensus 363 ~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys-------------------------------- 410 (1354)
T 3lxu_X 363 KYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYA-------------------------------- 410 (1354)
T ss_dssp TSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-----------------------------------
T ss_pred hCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccccc--------------------------------
Confidence 8999999999999986544 344 3799999999643221100000
Q ss_pred CCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 005334 314 STSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIK 393 (701)
Q Consensus 314 ~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 393 (701)
T Consensus 411 -------------------------------------------------------------------------------- 410 (1354)
T 3lxu_X 411 -------------------------------------------------------------------------------- 410 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEee
Q 005334 394 NYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNII 473 (701)
Q Consensus 394 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 473 (701)
......+.++.|||+||+. ++++||||+|||++|+++..... ..|..+
T Consensus 411 -------------------~~~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~~-----------~~y~~~ 458 (1354)
T 3lxu_X 411 -------------------MREKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFTM-----------SKSQLM 458 (1354)
T ss_dssp --------------------------CCCCCCCCSCCS--SSSCCEEEEEEC--------------------------CC
T ss_pred -------------------cccCCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCCC-----------CceecC
Confidence 0001124789999999997 68999999999999999755321 278899
Q ss_pred ccccchhhhHhHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCCCCc
Q 005334 474 SGTSMSCPHVSGLAALLKA----AHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGL 549 (701)
Q Consensus 474 sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~gl 549 (701)
+|||||||||||++|||++ .+|+|++.+||++|++||++.+. .+++.||+|+||+.+|++..+
T Consensus 459 SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~-------------~~~~~~G~GlLDa~~AV~~a~ 525 (1354)
T 3lxu_X 459 NGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY-------------VDPFAQGHGLLNVEKAFEHLT 525 (1354)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT-------------SCTTTSSSSBCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC-------------CCcccccCCEeCHHHHHHHHH
Confidence 9999999999999999986 79999999999999999998752 234589999999999999999
Q ss_pred cccCChhhHHhhhhcCCCCc-ceEEEeecccccccCCCCCCCCCCCCCceEeeccCCCCCcCCcCcceeEEEEEEEeeCC
Q 005334 550 VYDATVQDYLDFLCALDYSS-FQIKQATNRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVG 628 (701)
Q Consensus 550 v~d~~~~dy~~~lc~~~~~~-~~~~~~~~~~~~c~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~~~~~~~~~rtvtnv~ 628 (701)
.|+..+.+|+.|+|..++.. ..|- .+.. .| ++.. . .+++|+-+..|..
T Consensus 526 ~~~~~p~~~v~f~~~v~~~~~rgIy--lR~~-~~-------------~~~~------~---------~tv~V~p~f~~~~ 574 (1354)
T 3lxu_X 526 EHRQSKDNMLRFSVRVGNNADKGIH--LRQG-VQ-------------RNSI------D---------YNVYIEPIFYNDK 574 (1354)
T ss_dssp TTTTCGGGGEEEEEEETTTTBSSEE--ECSS-CC-------------CSCE------E---------EEEEEEEEESSCS
T ss_pred hcCCCCccceEEEEEecCCCCCceE--Eecc-cc-------------CCce------E---------EEEEEeeeecCcc
Confidence 99999999999999987532 2221 0000 00 0000 0 2333333442221
Q ss_pred ---CC-Ce-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeCCCCCeEEEEEEEEc-----CCeEEEeeEEE
Q 005334 629 ---TP-TT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSD-----GKHVVGSPIAF 698 (701)
Q Consensus 629 ---~~-~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~-----~~~~v~~P~~v 698 (701)
.. .. |...+...+..--|.+ |+.|.+ .++.++|.|.++.+.. .....+++|..-| .....|+||.|
T Consensus 575 ~~~~~~~i~f~~~l~L~~t~~wv~~-p~~l~l--~~~~r~~~v~vDp~~L-~~G~h~~~v~~~D~~~~~~gp~f~ipvTv 650 (1354)
T 3lxu_X 575 EADPKDKFNFNVRLNLIASQPWVQC-GAFLDL--SYGTRSIAVRVDPTGL-QPGVHSAVIRAYDTDCVQKGSLFEIPVTV 650 (1354)
T ss_dssp CSSSTTCSCCCCEEEEEESSTTEEE-CSCEEC--TTSCEEEEEEECGGGC-CSEEEEEEEEEEESSCTTSCCSEEEEEEE
T ss_pred cCChhhccceEEEEEEecCCCceec-ccceee--cCCCceEEEEECCCCC-CCcceeEEEEEEEcCCcccCceEEeeEEE
Confidence 11 11 4443331121222332 777777 5789999999998844 4467899998875 36899999987
Q ss_pred E
Q 005334 699 S 699 (701)
Q Consensus 699 ~ 699 (701)
.
T Consensus 651 ~ 651 (1354)
T 3lxu_X 651 V 651 (1354)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=421.43 Aligned_cols=270 Identities=22% Similarity=0.267 Sum_probs=214.9
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
+.+|+.+..++||+|||||||||++||+|.++.+. +.. .. ...+.....|..||||||||||+|+.
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~~~-------~~~-~~------~~~~~~~~~d~~gHGThVAGiiag~~ 76 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGADLT-------RLP-SL------VSGEANANGSMSTHGTHVASIIFGQH 76 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTCEEE-------ECC-----------------CCCCHHHHHHHHHHHCCT
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCCccc-------CCC-cc------cCCCCCCCCCCCCchHHHHHHHHccc
Confidence 45899887779999999999999999999875321 100 00 00111234567899999999999874
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHHcCCeEEEEeccCCC-CCCccCHHHHHHHHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG--CFGSDILAGMDKAIEDGVNVMSMSIGGGL-TDYYRDTVAIGAFTA 236 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~ai~~gvdVInlSlG~~~-~~~~~d~i~~a~~~a 236 (701)
.. .+.||||+|+|+.+|++.+.+ ....++++||+||++++++|||+|||... .......+..++..+
T Consensus 77 ~~----------~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~~~~~~~~~~~~ai~~a 146 (306)
T 4h6w_A 77 DS----------PVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDAGEADTWLEKAIQLC 146 (306)
T ss_dssp TS----------SSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHHHHHHHHHH
T ss_pred cC----------CcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccccCCCccHHHHHHHHHH
Confidence 21 248999999999999986543 67788999999999999999999999643 233455677788899
Q ss_pred HHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCc
Q 005334 237 MAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTS 316 (701)
Q Consensus 237 ~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~ 316 (701)
.++|++||++|||+|......+...+++|+|||+.
T Consensus 147 ~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~--------------------------------------------- 181 (306)
T 4h6w_A 147 QENNVLLIAATGNDGCECLHVPASLPTVLAVGAMD--------------------------------------------- 181 (306)
T ss_dssp HHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEEC---------------------------------------------
T ss_pred HHcCCeEEEecCCCCcccccccccCCcceEEEEec---------------------------------------------
Confidence 99999999999999988777778889999999832
Q ss_pred CCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhH
Q 005334 317 SGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYI 396 (701)
Q Consensus 317 ~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 396 (701)
T Consensus 182 -------------------------------------------------------------------------------- 181 (306)
T 4h6w_A 182 -------------------------------------------------------------------------------- 181 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccc
Q 005334 397 SSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGT 476 (701)
Q Consensus 397 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 476 (701)
..+.++.||++|+.. .||||+|||++|+++++.+ .|..++||
T Consensus 182 --------------------~~~~~~~~s~~g~~~-----~~~di~APG~~i~s~~~~~-------------~~~~~sGT 223 (306)
T 4h6w_A 182 --------------------DQGKPVDFSNWGDAY-----QKQGILAPGKDILGAKPNG-------------GTIRLSGT 223 (306)
T ss_dssp --------------------TTSCBCSSSCBCHHH-----HHHEEEEECSSEEEECTTS-------------CEEEECSH
T ss_pred --------------------CCCCccccccccCCc-----CcceeecCCcCcccccCCC-------------ceeccCCC
Confidence 112567788888653 5889999999999998764 79999999
Q ss_pred cchhhhHhHHHHHHHhh----CCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 477 SMSCPHVSGLAALLKAA----HPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 477 SmAaP~VAG~aALl~~~----~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
|||||||||++|||+++ +|.|+|++||++|++||++++..+. .....||+|+||+.+|++
T Consensus 224 S~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~----------~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 224 SFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKDT----------DDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTTC----------SCGGGGTTCBCCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCCC----------CCCCCcceeecCHHHHHH
Confidence 99999999999999864 6999999999999999998754321 123479999999999997
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-49 Score=423.80 Aligned_cols=271 Identities=18% Similarity=0.117 Sum_probs=214.6
Q ss_pred CCCCCCCCCCCC--CCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhc
Q 005334 79 SETLFPTSEVQS--EVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAA 156 (701)
Q Consensus 79 ~~~~~~~~~~G~--gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaA 156 (701)
...+|+. .+|+ ||+||||||||| +||+|.++. +.+..+... + .......+.|..||||||||||+
T Consensus 32 ~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~~-------~~~~~~~~~-~---~~~~~~~~~d~~gHGT~vAgiia 98 (347)
T 2iy9_A 32 LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDSE-------FAKFSFTQD-G---SPFPVKKSEALYIHGTAMASLIA 98 (347)
T ss_dssp CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTCE-------EEEEECBTT-C---CSSCCSSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcCc-------ccCCcccCC-C---CCCCCCCCCCCCCcHHHHHHHHh
Confidence 3568887 8899 999999999999 999998752 222211110 0 00111245678899999999999
Q ss_pred ccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHc------CCeEEEEeccCCCCCCccCHHH
Q 005334 157 GSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIED------GVNVMSMSIGGGLTDYYRDTVA 230 (701)
Q Consensus 157 G~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~------gvdVInlSlG~~~~~~~~d~i~ 230 (701)
|+ .| +.||||+|+|+.+|+++..+.. ++++||+||+++ |++|||||||........+.+.
T Consensus 99 ~~-------~g-----~~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~a~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~ 164 (347)
T 2iy9_A 99 SR-------YG-----IYGVYPHALISSRRVIPDGVQD--SWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTE 164 (347)
T ss_dssp CS-------SS-----SCCSSTTCEEEEEECCSSBCTT--HHHHHHHHHHTCTTSCTTEEEEEEESSCBCCC-CCHHHHH
T ss_pred cc-------cC-----CcccCCCCEEEEEEEecCCCHH--HHHHHHHHHHhhhhcccCCceEEEeccccCCCCCcCHHHH
Confidence 97 12 3899999999999999765533 999999999999 9999999999865444567788
Q ss_pred HHHHHHHHCCCEEEEecCCCCCC-------CCccccCCC----------ceEEecCCcc--CceeeeEEEcCCCcEEEEE
Q 005334 231 IGAFTAMAQGIFVSCSAGNGGPY-------ANSISNVAP----------WITTVGAGTL--DRNFPTYVSLGNGKSFSGV 291 (701)
Q Consensus 231 ~a~~~a~~~Gi~vV~AAGN~G~~-------~~~~~~~ap----------~vitVgAst~--~~~~~~~~~l~~g~~~~g~ 291 (701)
.++..+.++|++||+||||+|.. ...++...| ++|+|||++. +...
T Consensus 165 ~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~~g~~--------------- 229 (347)
T 2iy9_A 165 LLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGET--------------- 229 (347)
T ss_dssp HHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCCTTSC---------------
T ss_pred HHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCCCCce---------------
Confidence 88889999999999999999975 345666777 8999988532 1000
Q ss_pred EeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc
Q 005334 292 SLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE 371 (701)
Q Consensus 292 s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 371 (701)
T Consensus 230 -------------------------------------------------------------------------------- 229 (347)
T 2iy9_A 230 -------------------------------------------------------------------------------- 229 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEec
Q 005334 372 LVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAG 451 (701)
Q Consensus 372 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 451 (701)
......++.||++||+ ||||+|||++|+++
T Consensus 230 -------------------------------------------~~~~~~~~~fS~~G~~-------~~di~APG~~i~s~ 259 (347)
T 2iy9_A 230 -------------------------------------------PVLHGGGITGSRFGNN-------WVDIAAPGQNITFL 259 (347)
T ss_dssp -------------------------------------------CCBCCCSSSCBCBCTT-------TCSEEEECSSEEEE
T ss_pred -------------------------------------------ecccCCCCCCCCCCCC-------CCEEEeCCCCeEee
Confidence 0001245799999995 67999999999999
Q ss_pred ccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCC
Q 005334 452 WTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTP 531 (701)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~ 531 (701)
++.+ .|..++|||||||||||++|||+|++|+|++.+||++|++||++....+ .
T Consensus 260 ~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~-------------~ 313 (347)
T 2iy9_A 260 RPDA-------------KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV-------------D 313 (347)
T ss_dssp CTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT-------------T
T ss_pred cCCC-------------CeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC-------------C
Confidence 8764 7999999999999999999999999999999999999999999875321 1
Q ss_pred CCCCccccCccccCCC
Q 005334 532 FDFGAGHVDPVAALDP 547 (701)
Q Consensus 532 ~~~G~G~vn~~~A~~~ 547 (701)
..+|+|+||+.+|++.
T Consensus 314 ~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 314 KVTEGRVLNAEKAISM 329 (347)
T ss_dssp TSGGGEECCHHHHHHH
T ss_pred ccccCCEecHHHHHHH
Confidence 3999999999999984
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=427.54 Aligned_cols=291 Identities=27% Similarity=0.324 Sum_probs=221.0
Q ss_pred CCCCC-CCCCCCCCEEEEEccCCCC------CCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHH
Q 005334 80 ETLFP-TSEVQSEVIVGVLDTGVWP------EIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTS 152 (701)
Q Consensus 80 ~~~~~-~~~~G~gVvVgVIDtGId~------~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvA 152 (701)
+.+|+ .+++|+||+|||||||||+ .||+|.++.. . .++. .+...+.|..|||||||
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~i~-------~--~~~~--------~~~~~~~d~~gHGT~VA 73 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKIT-------A--LYAL--------GRTNNANDTNGHGTHVA 73 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTCEE-------E--EEET--------TTTTCCCCSSSHHHHHH
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCCEe-------e--eccc--------cCCCCCCCCCCcHHHHH
Confidence 35787 6899999999999999999 7999986511 1 1111 11135678899999999
Q ss_pred HhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCCC---ChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHH
Q 005334 153 TTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGC---FGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTV 229 (701)
Q Consensus 153 giaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~---~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i 229 (701)
|||+|+.. .+.||||+|+|+.+|+++..|. ...++.++|++|+++|++|||||||......+ +..
T Consensus 74 giiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~-~~~ 141 (434)
T 1wmd_A 74 GSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAY-TTD 141 (434)
T ss_dssp HHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTTCC-CHH
T ss_pred HHHHcCCC-----------CceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHhcCCeEEEecCCCCcCCcC-CHH
Confidence 99998631 1479999999999999987663 45689999999999999999999998652222 334
Q ss_pred HHHHHHH-HHCCCEEEEecCCCCCCCC--ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeE
Q 005334 230 AIGAFTA-MAQGIFVSCSAGNGGPYAN--SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPI 306 (701)
Q Consensus 230 ~~a~~~a-~~~Gi~vV~AAGN~G~~~~--~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l 306 (701)
..++.++ .++|++||+||||+|.... ..+..+|++|+|||++..+...
T Consensus 142 ~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~----------------------------- 192 (434)
T 1wmd_A 142 SRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF----------------------------- 192 (434)
T ss_dssp HHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-----------------------------
T ss_pred HHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc-----------------------------
Confidence 4444444 5899999999999997643 4566889999999964321100
Q ss_pred EEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEech
Q 005334 307 VDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGE 386 (701)
Q Consensus 307 ~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~ 386 (701)
+ .
T Consensus 193 ----------------------------------~---------------~----------------------------- 194 (434)
T 1wmd_A 193 ----------------------------------G---------------S----------------------------- 194 (434)
T ss_dssp ----------------------------------C---------------G-----------------------------
T ss_pred ----------------------------------C---------------c-----------------------------
Confidence 0 0
Q ss_pred hhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcc
Q 005334 387 KAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKR 466 (701)
Q Consensus 387 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 466 (701)
+ ....+.++.||++||+. ++++||||+|||++|+++++........ ....
T Consensus 195 --------~-------------------~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~s~~~~~~~~~~~-~~~~ 244 (434)
T 1wmd_A 195 --------Y-------------------ADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSF-WANH 244 (434)
T ss_dssp --------G-------------------GSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGS-SEEE
T ss_pred --------c-------------------cCCCCccccccCCCCCC--CCCCCceEEcCCCCeEecCCCCCCCccc-ccCC
Confidence 0 01234789999999998 6999999999999999998653210000 0011
Q ss_pred cceeEeeccccchhhhHhHHHHHHHhhCCCC-----CHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCc
Q 005334 467 HVSFNIISGTSMSCPHVSGLAALLKAAHPEW-----SPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDP 541 (701)
Q Consensus 467 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~-----sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~ 541 (701)
...|..++|||||||||||++|||+|++|++ ++++||++|++||+++.. ..+.+.+|||+||+
T Consensus 245 ~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~------------~~~~~~~G~G~vd~ 312 (434)
T 1wmd_A 245 DSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL------------GYPNGNQGWGRVTL 312 (434)
T ss_dssp ETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS------------CSSCTTTTTCBCCH
T ss_pred CCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC------------CCCCccCCcCeEeH
Confidence 2479999999999999999999999999876 999999999999987531 23456999999999
Q ss_pred cccCCCC
Q 005334 542 VAALDPG 548 (701)
Q Consensus 542 ~~A~~~g 548 (701)
.+|++..
T Consensus 313 ~~a~~~~ 319 (434)
T 1wmd_A 313 DKSLNVA 319 (434)
T ss_dssp HHHHTCE
T ss_pred HHhcccc
Confidence 9999754
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-48 Score=414.16 Aligned_cols=283 Identities=28% Similarity=0.378 Sum_probs=218.4
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceee--E--ecccCC----c------------cCCCCC
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVW--Y--EEAVGP----I------------DETAES 138 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~--~--~~~~~~----~------------~~~~~~ 138 (701)
+..+|+.+++|+||+||||||||+ +||+|.++... .|+-.. . ....+. . ......
T Consensus 21 ~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (340)
T 3lpc_A 21 ADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPFDEGDWFDNWACGGRPDPR 95 (340)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTSCTTCGG
T ss_pred HHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCccccccccccccccCCCCcc
Confidence 356999999999999999999998 99999875322 111000 0 000000 0 001111
Q ss_pred CCCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH----------c
Q 005334 139 KSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE----------D 208 (701)
Q Consensus 139 ~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~----------~ 208 (701)
....|..||||||||||+|...+.. | +.||||+|+|+.+|+++..++...+++++|+||++ .
T Consensus 96 ~~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~~~~~~ 167 (340)
T 3lpc_A 96 KERSDSSWHGSHVAGTIAAVTNNRI---G-----VAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRN 167 (340)
T ss_dssp GSCBCCCCHHHHHHHHHHCCCSSSS---S-----CCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTSCCCSS
T ss_pred cCCCCCCCCHHHHHHHHHccCCCCC---c-----ceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhcccccccccccC
Confidence 2356889999999999999854332 2 38999999999999998888889999999999998 8
Q ss_pred CCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCC-ccccCCCceEEecCCccCceeeeEEEcCCCcE
Q 005334 209 GVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYAN-SISNVAPWITTVGAGTLDRNFPTYVSLGNGKS 287 (701)
Q Consensus 209 gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~ 287 (701)
+++|||||||... .....+..++.+|.++|++||+||||+|.... ..+...|++|+|||++
T Consensus 168 ~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~---------------- 229 (340)
T 3lpc_A 168 PAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATT---------------- 229 (340)
T ss_dssp CCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEEC----------------
T ss_pred CCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCC----------------
Confidence 9999999999743 22345667777889999999999999997643 4566788999999832
Q ss_pred EEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCC
Q 005334 288 FSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDS 367 (701)
Q Consensus 288 ~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 367 (701)
T Consensus 230 -------------------------------------------------------------------------------- 229 (340)
T 3lpc_A 230 -------------------------------------------------------------------------------- 229 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCc
Q 005334 368 YGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVN 447 (701)
Q Consensus 368 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~ 447 (701)
..+.++.||++|| ||||+|||++
T Consensus 230 -------------------------------------------------~~~~~~~~S~~g~--------~~di~ApG~~ 252 (340)
T 3lpc_A 230 -------------------------------------------------SRGIRASFSNYGV--------DVDLAAPGQD 252 (340)
T ss_dssp -------------------------------------------------TTSSBCTTCCBST--------TCCEEEECSS
T ss_pred -------------------------------------------------CCCCcCCCCCCCC--------CceEEecCCC
Confidence 1126788999997 5699999999
Q ss_pred EEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhh-C---CCCCHHHHHHHHHhccccCCCCCcccccC
Q 005334 448 ILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAA-H---PEWSPSAIKSALMTTAYSTNGNGKTLLDI 523 (701)
Q Consensus 448 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-~---P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~ 523 (701)
|+++++..... .....|..++|||||||||||++|||+|+ + |+|++++||++|++||+++..
T Consensus 253 i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~-------- 318 (340)
T 3lpc_A 253 ILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG-------- 318 (340)
T ss_dssp EEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS--------
T ss_pred eecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC--------
Confidence 99998765321 11246999999999999999999999998 5 999999999999999998741
Q ss_pred CCCCCCCCCCCCccccCccccCCCC
Q 005334 524 STGQPSTPFDFGAGHVDPVAALDPG 548 (701)
Q Consensus 524 ~~~~~~~~~~~G~G~vn~~~A~~~g 548 (701)
.....+|+|+||+.+|++..
T Consensus 319 -----~~~~~~G~G~vd~~~Av~~~ 338 (340)
T 3lpc_A 319 -----RLDRALGSGIVDAEAAVNSV 338 (340)
T ss_dssp -----CCSSCCCSSBCCHHHHHHHH
T ss_pred -----CCCCCcccceecHHHHHHHH
Confidence 12348999999999998743
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=392.51 Aligned_cols=235 Identities=29% Similarity=0.424 Sum_probs=198.4
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
..+|..+++|+||+|||||||||++||+|.++.. . .|+. ......+.|..||||||||||+|+.
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~~~-------~--~~~~-------~~~~~~~~d~~gHGT~vAgiia~~~ 82 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGRSV-------S--GYDF-------VDNDADSSDCNGHGTHVAGTIGGSQ 82 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTCEE-------E--EEET-------TTTBSCCCCSSSHHHHHHHHHHCTT
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCCcc-------c--cccc-------cCCCCCCCCCCCcHHHHHHHHhccc
Confidence 4689999999999999999999999999987521 1 1221 1122346789999999999999873
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc--CCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED--GVNVMSMSIGGGLTDYYRDTVAIGAFTA 236 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~--gvdVInlSlG~~~~~~~~d~i~~a~~~a 236 (701)
.||||+|+|+.+|+++..+ +..+++++||+|++++ +++|||||||.. ....+..++.++
T Consensus 83 --------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~----~~~~~~~ai~~a 144 (284)
T 1sh7_A 83 --------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGG----QSTALDSAVQGA 144 (284)
T ss_dssp --------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBS----CCHHHHHHHHHH
T ss_pred --------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCC----CCHHHHHHHHHH
Confidence 6999999999999998776 6788999999999984 799999999985 245677778889
Q ss_pred HHCCCEEEEecCCCCCCCC-ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCC
Q 005334 237 MAQGIFVSCSAGNGGPYAN-SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSST 315 (701)
Q Consensus 237 ~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~ 315 (701)
.++|++||+||||+|.... ..+...|++|+|||++
T Consensus 145 ~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------------------------------------- 180 (284)
T 1sh7_A 145 IQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTT-------------------------------------------- 180 (284)
T ss_dssp HHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEEC--------------------------------------------
T ss_pred HHCCCEEEEECCcCCCCCCccccccCCCeEEEEEec--------------------------------------------
Confidence 9999999999999997543 4566789999999832
Q ss_pred cCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHh
Q 005334 316 SSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNY 395 (701)
Q Consensus 316 ~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 395 (701)
T Consensus 181 -------------------------------------------------------------------------------- 180 (284)
T 1sh7_A 181 -------------------------------------------------------------------------------- 180 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecc
Q 005334 396 ISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISG 475 (701)
Q Consensus 396 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 475 (701)
..+.++.||++||.. ||+|||++|+++++.+ .|..++|
T Consensus 181 ---------------------~~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~-------------~~~~~sG 218 (284)
T 1sh7_A 181 ---------------------SSDSRSSFSNWGSCV--------DLFAPGSQIKSAWYDG-------------GYKTISG 218 (284)
T ss_dssp ---------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECTTS-------------SEEEECS
T ss_pred ---------------------CCCCcCcccCCCCcc--------EEEeccCCeEEecCCC-------------CEEEccC
Confidence 112678899999965 9999999999998764 7899999
Q ss_pred ccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 005334 476 TSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTN 514 (701)
Q Consensus 476 TSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~ 514 (701)
||||||||||++|||+|++|+|++++||++|++||++..
T Consensus 219 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 219 TSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred hHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 999999999999999999999999999999999999764
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=387.86 Aligned_cols=237 Identities=32% Similarity=0.424 Sum_probs=197.6
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
..+|..+++|+||+|+|||||||++||+|.++.. ..++. .....++.|..||||||||||+|+.
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~---------~~~d~-------~~~~~~~~d~~gHGT~vAgiia~~~ 84 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGRAS---------SGYDF-------IDNDYDATDCNGHGTHVAGTIGGST 84 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTCEE---------EEEET-------TTTBSCCCCSSSHHHHHHHHHHCTT
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcccc---------cCeec-------CCCCCCCCCCCCcHHHHHHHHHCCC
Confidence 4579999999999999999999999999987521 11221 1122346789999999999999862
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHH--cCCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIE--DGVNVMSMSIGGGLTDYYRDTVAIGAFTA 236 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~--~gvdVInlSlG~~~~~~~~d~i~~a~~~a 236 (701)
.||||+|+|+.+|++++.+ +..++++++|+|+++ .+++|||||||... ...+..++.++
T Consensus 85 --------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~----~~~~~~ai~~a 146 (278)
T 2b6n_A 85 --------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA----SQATDDAVNAA 146 (278)
T ss_dssp --------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC----CHHHHHHHHHH
T ss_pred --------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc----CHHHHHHHHHH
Confidence 6999999999999998776 778899999999998 59999999999854 35667777788
Q ss_pred HHCCCEEEEecCCCCCCCC-ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCC
Q 005334 237 MAQGIFVSCSAGNGGPYAN-SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSST 315 (701)
Q Consensus 237 ~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~ 315 (701)
.++|++||+||||+|.... ..+...|++|+|||.+
T Consensus 147 ~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------------------------------------- 182 (278)
T 2b6n_A 147 VAAGITFVVAAGNDNSNACNYSPARAADAITVGSTT-------------------------------------------- 182 (278)
T ss_dssp HHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC--------------------------------------------
T ss_pred HHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeC--------------------------------------------
Confidence 9999999999999997653 3466788999999832
Q ss_pred cCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHh
Q 005334 316 SSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNY 395 (701)
Q Consensus 316 ~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 395 (701)
T Consensus 183 -------------------------------------------------------------------------------- 182 (278)
T 2b6n_A 183 -------------------------------------------------------------------------------- 182 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecc
Q 005334 396 ISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISG 475 (701)
Q Consensus 396 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 475 (701)
..+.++.||++||.. ||+|||++|++++.... ..|..++|
T Consensus 183 ---------------------~~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~~-----------~~~~~~sG 222 (278)
T 2b6n_A 183 ---------------------SNDSRSSFSNYGTCL--------DIYAPGSSITSSWYTSN-----------SATNTISG 222 (278)
T ss_dssp ---------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECTTST-----------TCEEEECS
T ss_pred ---------------------CCCCcCCcCCCCCCC--------eEEeCCCCeECcccCCC-----------CCEEEeCc
Confidence 112667899999854 99999999999886531 27899999
Q ss_pred ccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 005334 476 TSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTN 514 (701)
Q Consensus 476 TSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~ 514 (701)
||||||||||++|||+|++|+|++.+||++|++||++..
T Consensus 223 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 223 TSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 999999999999999999999999999999999998753
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-46 Score=386.33 Aligned_cols=235 Identities=30% Similarity=0.446 Sum_probs=199.1
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
..+|..+.+|+||+|||||||||++||+|.++. +.+ ++.. ...+.|..||||||||||+|..
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~~-------~~~--~~~~---------~~~~~d~~gHGT~vAgiiag~~ 82 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGRA-------RVG--YDAL---------GGNGQDCNGHGTHVAGTIGGVT 82 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTCE-------EEE--EETT---------SSCSCCSSSHHHHHHHHHHCTT
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccCe-------ecc--ccCC---------CCCCCCCCCCHHHHHHHHHccc
Confidence 568999999999999999999999999998752 111 1111 1346788999999999999873
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc--CCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED--GVNVMSMSIGGGLTDYYRDTVAIGAFTA 236 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~--gvdVInlSlG~~~~~~~~d~i~~a~~~a 236 (701)
.|+||+|+|+.+|+++..+ ....+++++|+|+++. +++|||||||... ...+..++.++
T Consensus 83 --------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~~----~~~~~~a~~~a 144 (276)
T 4dzt_A 83 --------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGV----STALDNAVKNS 144 (276)
T ss_dssp --------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC----CHHHHHHHHHH
T ss_pred --------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCCC----CHHHHHHHHHH
Confidence 7999999999999998776 7888999999999997 8999999999743 46677788899
Q ss_pred HHCCCEEEEecCCCCCCCCc-cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCC
Q 005334 237 MAQGIFVSCSAGNGGPYANS-ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSST 315 (701)
Q Consensus 237 ~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~ 315 (701)
.++|+++|+||||+|..... .+...|++|+|||.+
T Consensus 145 ~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------------------------------------- 180 (276)
T 4dzt_A 145 IAAGVVYAVAAGNDNANACNYSPARVAEALTVGATT-------------------------------------------- 180 (276)
T ss_dssp HHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC--------------------------------------------
T ss_pred HhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEEC--------------------------------------------
Confidence 99999999999999976543 366788899998832
Q ss_pred cCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHh
Q 005334 316 SSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNY 395 (701)
Q Consensus 316 ~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 395 (701)
T Consensus 181 -------------------------------------------------------------------------------- 180 (276)
T 4dzt_A 181 -------------------------------------------------------------------------------- 180 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecc
Q 005334 396 ISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISG 475 (701)
Q Consensus 396 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 475 (701)
..+.++.||++||.. ||+|||++|++++.... ..|..++|
T Consensus 181 ---------------------~~~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~~-----------~~~~~~sG 220 (276)
T 4dzt_A 181 ---------------------SSDARASFSNYGSCV--------DLFAPGASIPSAWYTSD-----------TATQTLNG 220 (276)
T ss_dssp ---------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECTTSS-----------SCEEEECS
T ss_pred ---------------------CCCCcCCcCCCCCCc--------eEEeCCCCeEccccCCC-----------CceEEeeE
Confidence 122678899999976 99999999999987642 26899999
Q ss_pred ccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 005334 476 TSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTN 514 (701)
Q Consensus 476 TSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~ 514 (701)
||||||||||++|||+|++|+|++++||++|++||++..
T Consensus 221 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 259 (276)
T 4dzt_A 221 TSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGR 259 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCc
Confidence 999999999999999999999999999999999999874
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=387.79 Aligned_cols=241 Identities=32% Similarity=0.417 Sum_probs=200.8
Q ss_pred CCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccC
Q 005334 82 LFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVN 161 (701)
Q Consensus 82 ~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~ 161 (701)
.|. ..+|+||+|+|||||||++||+|.++.. .+ ++. . ..+.|..||||||||||+|+.
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~~~-------~~--~~~-------~---~~~~d~~gHGT~vAgiia~~~-- 81 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGRAQ-------MV--KTY-------Y---YSSRDGNGHGTHCAGTVGSRT-- 81 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTCEE-------EE--EES-------S---SCSSCSSSHHHHHHHHHHCTT--
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCccc-------cc--cCC-------C---CCCCCCCCCHHHHHHHHHhcc--
Confidence 454 3689999999999999999999987521 11 111 1 236788999999999999872
Q ss_pred CCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCC-------eEEEEeccCCCCCCccCHHHHHH
Q 005334 162 GASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGV-------NVMSMSIGGGLTDYYRDTVAIGA 233 (701)
Q Consensus 162 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gv-------dVInlSlG~~~~~~~~d~i~~a~ 233 (701)
.||||+|+|+.+|+++..+ +..+++++||+|++++++ +|||||||.. +.+.+..++
T Consensus 82 ------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~----~~~~~~~ai 145 (279)
T 2pwa_A 82 ------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAA 145 (279)
T ss_dssp ------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----CCHHHHHHH
T ss_pred ------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCC----CCHHHHHHH
Confidence 7999999999999998876 788999999999999987 9999999974 346677788
Q ss_pred HHHHHCCCEEEEecCCCCCCCC-ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCC
Q 005334 234 FTAMAQGIFVSCSAGNGGPYAN-SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANV 312 (701)
Q Consensus 234 ~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~ 312 (701)
.++.++|++||+||||+|.... ..+...|++|+|||++
T Consensus 146 ~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~----------------------------------------- 184 (279)
T 2pwa_A 146 ARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD----------------------------------------- 184 (279)
T ss_dssp HHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC-----------------------------------------
T ss_pred HHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEec-----------------------------------------
Confidence 8899999999999999997643 3566789999999832
Q ss_pred CCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHH
Q 005334 313 SSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAI 392 (701)
Q Consensus 313 ~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l 392 (701)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T 2pwa_A 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEe
Q 005334 393 KNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNI 472 (701)
Q Consensus 393 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 472 (701)
..+.++.||++||.. ||+|||++|+++++.+ .|..
T Consensus 185 ------------------------~~~~~~~~S~~G~~~--------di~APG~~i~s~~~~~-------------~~~~ 219 (279)
T 2pwa_A 185 ------------------------RYDRRSSFSNYGSVL--------DIFGPGTDILSTWIGG-------------STRS 219 (279)
T ss_dssp ------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEEETTT-------------EEEE
T ss_pred ------------------------CCCCcCCcCCCCCcc--------eEEEecCCeEEeecCC-------------CEEE
Confidence 112678899999864 9999999999998764 7999
Q ss_pred eccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccc
Q 005334 473 ISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVA 543 (701)
Q Consensus 473 ~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~ 543 (701)
++|||||||||||++|||+|+ |++++.+||++|++||++.... .+|+|..|+..
T Consensus 220 ~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~~----------------~~~~g~~n~l~ 273 (279)
T 2pwa_A 220 ISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDLS----------------NIPFGTVNLLA 273 (279)
T ss_dssp ECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCCB----------------SCCTTSCCEEC
T ss_pred cCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCcccccC----------------CCCCCCccEee
Confidence 999999999999999999999 9999999999999999976311 56778777643
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=416.02 Aligned_cols=292 Identities=16% Similarity=0.153 Sum_probs=213.4
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
+..+|..+++|+||+|||||||||++||+|.++... +..|+..... ....+...+.|..||||||||||||.
T Consensus 27 ~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~~-------~~~~d~~~~~-~~p~~~~~~~d~~gHGT~vAGiiaa~ 98 (471)
T 1p8j_A 27 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDP-------GASFDVNDQD-PDPQPRYTQMNDNRHGTRCAGEVAAV 98 (471)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCG-------GGCEETTTTB-SCCCCCCCTTCTTCHHHHHHHHHHCC
T ss_pred hHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccCc-------cCcccccCCC-CCCCCccCCCCCCCcHHHHHHHHHee
Confidence 356899999999999999999999999999875211 1112221110 00111123568899999999999997
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH-cCCeEEEEeccCCCCC----CccCHHHHHH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE-DGVNVMSMSIGGGLTD----YYRDTVAIGA 233 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~-~gvdVInlSlG~~~~~----~~~d~i~~a~ 233 (701)
..++. .+.||||+|+|+.+|+++ +..+++++|++++++ ++++|||||||..... .....+..++
T Consensus 99 ~~n~~--------g~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~ 167 (471)
T 1p8j_A 99 ANNGV--------CGVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAF 167 (471)
T ss_dssp SSSSS--------SCCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHH
T ss_pred ccCCC--------CCEEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCeEEEeccCcCCCCCcccCcHHHHHHHH
Confidence 53322 138999999999999985 446789999999999 9999999999985421 1123344444
Q ss_pred HHHH-----HCCCEEEEecCCCCCCCCc----cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCcee
Q 005334 234 FTAM-----AQGIFVSCSAGNGGPYANS----ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMV 304 (701)
Q Consensus 234 ~~a~-----~~Gi~vV~AAGN~G~~~~~----~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~ 304 (701)
.++. .+|++||+||||+|..... ....+|++|+|||.+
T Consensus 168 ~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~--------------------------------- 214 (471)
T 1p8j_A 168 FRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT--------------------------------- 214 (471)
T ss_dssp HHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC---------------------------------
T ss_pred HHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEeccc---------------------------------
Confidence 5554 3799999999999975322 123458899999832
Q ss_pred eEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEe
Q 005334 305 PIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANV 384 (701)
Q Consensus 305 ~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 384 (701)
T Consensus 215 -------------------------------------------------------------------------------- 214 (471)
T 1p8j_A 215 -------------------------------------------------------------------------------- 214 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCC
Q 005334 385 GEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESD 464 (701)
Q Consensus 385 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 464 (701)
..+.++.||++||... ...+|...+||.+|+++....
T Consensus 215 --------------------------------~~g~~a~~S~~g~~~~--~~~~~~~~~~g~~i~st~~~~--------- 251 (471)
T 1p8j_A 215 --------------------------------QFGNVPWYSEACSSTL--ATTYSSGNQNEKQIVTTDLRQ--------- 251 (471)
T ss_dssp --------------------------------TTSCCCTTCCBCTTCC--EEEECCCSTTSCCEEEEETTT---------
T ss_pred --------------------------------CCCCcccccCCCCcce--EEeCCCCCCCCCCEEEeeCCC---------
Confidence 1226788999999873 344555555667999987643
Q ss_pred cccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCcccc
Q 005334 465 KRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAA 544 (701)
Q Consensus 465 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A 544 (701)
..|..++|||||||||||++|||+|++|+|++++||++|++||++.+........+. ........||||+||+.+|
T Consensus 252 ---~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~-~g~~~~~~~G~G~vda~~A 327 (471)
T 1p8j_A 252 ---KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNG-VGRKVSHSYGYGLLDAGAM 327 (471)
T ss_dssp ---EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECT-TSCEEBTTTBTCBCCHHHH
T ss_pred ---CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecC-CCcccCCCCCCEEEcHhHH
Confidence 368999999999999999999999999999999999999999998864432222111 1112345999999999999
Q ss_pred CCCCc
Q 005334 545 LDPGL 549 (701)
Q Consensus 545 ~~~gl 549 (701)
++...
T Consensus 328 v~~a~ 332 (471)
T 1p8j_A 328 VALAQ 332 (471)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98544
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=409.91 Aligned_cols=283 Identities=18% Similarity=0.179 Sum_probs=211.8
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
..+|..+++|+||+|||||||||++||+|.++.. ....|+.... ........|..||||||||||||..
T Consensus 44 ~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~-------~~~~~d~~~~----~~~~~p~~d~~gHGT~vAGiiaa~~ 112 (503)
T 2id4_A 44 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------AEGSWDFNDN----TNLPKPRLSDDYHGTRCAGEIAAKK 112 (503)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------GGGCEETTTT----BSCCCCCSTTTTHHHHHHHHHHCCS
T ss_pred HHHHhcCCCCCCeEEEEEeCCCCCCChhHhhccc-------ccCcccCCCC----CCCCCCCCCCCChHHHHHHHHHhcc
Confidence 4589999999999999999999999999987622 1111222111 1111123578899999999999975
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCCCCC----CccCHHHHHHHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTD----YYRDTVAIGAFT 235 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~----~~~d~i~~a~~~ 235 (701)
.++. | +.||||+|+|+.+|+++.. +...++++||++|++++ +|||||||..... .....+..++.+
T Consensus 113 ~n~~---~-----~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~~~~~~~~~~~~~~a~~~ 182 (503)
T 2id4_A 113 GNNF---C-----GVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSCSWGPADDGRHLQGPSDLVKKALVK 182 (503)
T ss_dssp SSSS---S-----CCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEECEESCCSSSCCBCCCHHHHHHHHH
T ss_pred CCCC---C-----cEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEEeCCCcCCCCccccCchHHHHHHHHH
Confidence 3322 1 3799999999999999743 67888999999999988 9999999985421 122345556666
Q ss_pred HH-----HCCCEEEEecCCCCCCCC--ccc--cCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeE
Q 005334 236 AM-----AQGIFVSCSAGNGGPYAN--SIS--NVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPI 306 (701)
Q Consensus 236 a~-----~~Gi~vV~AAGN~G~~~~--~~~--~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l 306 (701)
+. .+|++||+||||+|.... .++ ..++++|+|||.+
T Consensus 183 a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~----------------------------------- 227 (503)
T 2id4_A 183 GVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID----------------------------------- 227 (503)
T ss_dssp HHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC-----------------------------------
T ss_pred HHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeC-----------------------------------
Confidence 65 479999999999996532 222 2567889998832
Q ss_pred EEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEech
Q 005334 307 VDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGE 386 (701)
Q Consensus 307 ~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~ 386 (701)
T Consensus 228 -------------------------------------------------------------------------------- 227 (503)
T 2id4_A 228 -------------------------------------------------------------------------------- 227 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEe----cCCcEEecccCCCCCCCCC
Q 005334 387 KAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIA----PGVNILAGWTGAVGPTGLE 462 (701)
Q Consensus 387 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~A----PG~~I~sa~~~~~~~~~~~ 462 (701)
..+.++.||++||.. |++| ||..|+++....
T Consensus 228 ------------------------------~~~~~a~~S~~g~~~--------~~~a~~~gpG~~I~st~~~~------- 262 (503)
T 2id4_A 228 ------------------------------HKDLHPPYSEGCSAV--------MAVTYSSGSGEYIHSSDING------- 262 (503)
T ss_dssp ------------------------------TTSCCCTTCCCCTTE--------EEEEECSBTTBCEEEECSTT-------
T ss_pred ------------------------------CCCCcCCcCCCCCcc--------eEeecCCCCCCceEeecCCC-------
Confidence 122567899999987 8887 899999985432
Q ss_pred CCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCC-CcccccCCCCCCCCCCCCCccccCc
Q 005334 463 SDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGN-GKTLLDISTGQPSTPFDFGAGHVDP 541 (701)
Q Consensus 463 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~-g~~~~~~~~~~~~~~~~~G~G~vn~ 541 (701)
..|..++|||||||||||++|||+|++|+|++++||++|++||++++.. ......+. ........||||+||+
T Consensus 263 -----~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~-~g~~~~~~~G~G~vda 336 (503)
T 2id4_A 263 -----RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSA-MGKKYSHRYGFGKIDA 336 (503)
T ss_dssp -----CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECS-SSSEEBTTTBTCBCCH
T ss_pred -----CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecC-CCCccCcccCCcEecH
Confidence 3799999999999999999999999999999999999999999987643 11111111 1112234899999999
Q ss_pred cccCCCCc
Q 005334 542 VAALDPGL 549 (701)
Q Consensus 542 ~~A~~~gl 549 (701)
.+|++...
T Consensus 337 ~~Av~~a~ 344 (503)
T 2id4_A 337 HKLIEMSK 344 (503)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998544
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=401.41 Aligned_cols=246 Identities=25% Similarity=0.300 Sum_probs=188.6
Q ss_pred CCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccC
Q 005334 82 LFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVN 161 (701)
Q Consensus 82 ~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~ 161 (701)
.|..+.+|+||+|+|||||||++||+|.++.. + ..|+.... .+.......+.|..||||||||||+|+.
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~~------~--~~~~~v~~-~dg~~f~~~~~D~~GHGThVAGIIag~~-- 86 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------V--TDFENVPE-EDGTRFHRQASKCDSHGTHLAGVVSGRD-- 86 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTEE------E--EEEECCCC-CC-------CTTTTHHHHHHHHHHHCTT--
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHccccc------c--cCcccccC-CCCccccCCCCCCCChHHHHHHHHhccC--
Confidence 78888999999999999999999999987521 1 11111100 0000001346788999999999999873
Q ss_pred CCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc------CCeEEEEeccCCCCCCccCHHHHHHH
Q 005334 162 GASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED------GVNVMSMSIGGGLTDYYRDTVAIGAF 234 (701)
Q Consensus 162 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~------gvdVInlSlG~~~~~~~~d~i~~a~~ 234 (701)
.||||+|+|+.+|+++..| ++.+++++||+|+++. +++|||||||+. +...+..++.
T Consensus 87 ------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg~----~s~~l~~Ai~ 150 (546)
T 2qtw_B 87 ------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG----YSRVLNAACQ 150 (546)
T ss_dssp ------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEEE----CCHHHHHHHH
T ss_pred ------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCCC----CcHHHHHHHH
Confidence 6999999999999998776 6788999999999984 899999999974 3456777888
Q ss_pred HHHHCCCEEEEecCCCCCCCC-ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCC
Q 005334 235 TAMAQGIFVSCSAGNGGPYAN-SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVS 313 (701)
Q Consensus 235 ~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~ 313 (701)
+|.++|++||+||||+|.... ..+...|++|+|||++.+...
T Consensus 151 ~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~------------------------------------- 193 (546)
T 2qtw_B 151 RLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP------------------------------------- 193 (546)
T ss_dssp HHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-------------------------------------
T ss_pred HHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-------------------------------------
Confidence 899999999999999997643 346778999999985321100
Q ss_pred CCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 005334 314 STSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIK 393 (701)
Q Consensus 314 ~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 393 (701)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEee
Q 005334 394 NYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNII 473 (701)
Q Consensus 394 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 473 (701)
...-..||++|+ ||||+|||++|+++++... ..|..+
T Consensus 194 ------------------------a~~s~~fSn~G~--------~vDI~APG~~I~St~~~~~-----------~~y~~~ 230 (546)
T 2qtw_B 194 ------------------------VTLGTLGTNFGR--------CVDLFAPGEDIIGASSDCS-----------TCFVSQ 230 (546)
T ss_dssp ------------------------CEETTEECCBST--------TCCEEEECSSEEEECTTST-----------TCEEEE
T ss_pred ------------------------ccccCCcCCCCC--------cceEEecCccEEeeccCCC-----------CcEeee
Confidence 000012889987 4599999999999987642 268999
Q ss_pred ccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 005334 474 SGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTN 514 (701)
Q Consensus 474 sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~ 514 (701)
+|||||||||||++|||+|++|+|+|++||++|++||.+..
T Consensus 231 SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~ 271 (546)
T 2qtw_B 231 SGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDV 271 (546)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESC
T ss_pred CcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999998653
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-45 Score=379.36 Aligned_cols=228 Identities=34% Similarity=0.456 Sum_probs=192.1
Q ss_pred CCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccC
Q 005334 82 LFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVN 161 (701)
Q Consensus 82 ~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~ 161 (701)
+|... +|+||+|||||||||++||+|.++. +.+. +. .....|..||||||||||+|+.
T Consensus 25 ~~~~~-~G~gv~VaViDtGvd~~h~~l~~~~-------~~~~--~~----------~~~~~d~~gHGT~vAgii~~~~-- 82 (279)
T 3f7m_A 25 AYDTS-AGAGACVYVIDTGVEDTHPDFEGRA-------KQIK--SY----------ASTARDGHGHGTHCAGTIGSKT-- 82 (279)
T ss_dssp EECTT-TTTTEEEEEEESCCCTTCGGGTTCE-------EEEE--EC----------SSSSSCSSSHHHHHHHHHHCTT--
T ss_pred eecCC-CCCCCEEEEEcCCCCCCChhhcccc-------cccc--CC----------CCCCCCCCCcHHHHHHHHhcCc--
Confidence 56655 8999999999999999999998752 1111 11 0123388999999999999862
Q ss_pred CCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcC-------CeEEEEeccCCCCCCccCHHHHHH
Q 005334 162 GASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDG-------VNVMSMSIGGGLTDYYRDTVAIGA 233 (701)
Q Consensus 162 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~g-------vdVInlSlG~~~~~~~~d~i~~a~ 233 (701)
.||||+|+|+.+|+++..+ +...+++++|+++++++ ++|||||||.. +.+.+..++
T Consensus 83 ------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~----~~~~~~~a~ 146 (279)
T 3f7m_A 83 ------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG----YSAALNQAA 146 (279)
T ss_dssp ------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----CCHHHHHHH
T ss_pred ------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC----ccHHHHHHH
Confidence 7999999999999998776 78889999999999986 99999999974 456777888
Q ss_pred HHHHHCCCEEEEecCCCCCCCCc-cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCC
Q 005334 234 FTAMAQGIFVSCSAGNGGPYANS-ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANV 312 (701)
Q Consensus 234 ~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~ 312 (701)
.++.++|++||+||||+|..... .+...|++|+|||.+
T Consensus 147 ~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~----------------------------------------- 185 (279)
T 3f7m_A 147 ARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATD----------------------------------------- 185 (279)
T ss_dssp HHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC-----------------------------------------
T ss_pred HHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecC-----------------------------------------
Confidence 89999999999999999976443 366788999999832
Q ss_pred CCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHH
Q 005334 313 SSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAI 392 (701)
Q Consensus 313 ~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l 392 (701)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 3f7m_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEe
Q 005334 393 KNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNI 472 (701)
Q Consensus 393 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 472 (701)
..+.++.||++||.. ||+|||++|+++++.+ .|..
T Consensus 186 ------------------------~~~~~~~~S~~g~~~--------di~ApG~~i~s~~~~~-------------~~~~ 220 (279)
T 3f7m_A 186 ------------------------SNDVRSTFSNYGRVV--------DIFAPGTSITSTWIGG-------------RTNT 220 (279)
T ss_dssp ------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECGGG-------------CEEE
T ss_pred ------------------------CCCCCCCCCCCCCCC--------eEEECCCCeEeecCCC-------------CEEE
Confidence 112678899999965 9999999999998764 6899
Q ss_pred eccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 005334 473 ISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTN 514 (701)
Q Consensus 473 ~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~ 514 (701)
++|||||||||||++|||+|++|+ ++++||.+|++||++..
T Consensus 221 ~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 221 ISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred eeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 999999999999999999999999 99999999999998764
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=396.13 Aligned_cols=316 Identities=22% Similarity=0.202 Sum_probs=198.4
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
..+|..+++|+||+|||||||||++||+|.++... +. ++.. +...+.....|.+||||||||||||..
T Consensus 60 ~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~~~-------~~-~~~~----~~~~dp~p~~~~~gHGThVAGiIAa~~ 127 (600)
T 3hjr_A 60 WWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNVRP-------GS-KNVV----TGSDDPTPTDPDTAHGTSVSGIIAAVD 127 (600)
T ss_dssp HHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGBCS-------CC-BCTT----TSSSCCCCCSTTCCHHHHHHHHHHCCS
T ss_pred HHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcccc-------Cc-ceee----cCCCCCCCCCCCCChHHHHHHHHhEeC
Confidence 45899999999999999999999999999875211 10 1111 111122223467899999999999862
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHH-HHHHHcCCeEEEEeccCCC-CCCccCH-----HHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGM-DKAIEDGVNVMSMSIGGGL-TDYYRDT-----VAI 231 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai-~~ai~~gvdVInlSlG~~~-~~~~~d~-----i~~ 231 (701)
+ ..| +.||||+|+|+.+|++++.+ +..++++.|+ +++..++++|||+|||... .+...+. +..
T Consensus 128 -n---~~g-----~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~~~~~~~~~~~~~~~~ 198 (600)
T 3hjr_A 128 -N---AIG-----TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVVDPRSANSLDQSQLDR 198 (600)
T ss_dssp -S---SSS-----CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCSSCCCSCSHHHHHHHH
T ss_pred -C---CCC-----cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCccccCCccCCcchhhhHHH
Confidence 1 122 38999999999999998776 6677777766 6778899999999999753 1111111 222
Q ss_pred HHHHH--HHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEc
Q 005334 232 GAFTA--MAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDA 309 (701)
Q Consensus 232 a~~~a--~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~ 309 (701)
++..+ ..+|+++|+||||.+....... .....+ +++.
T Consensus 199 ~~~~~~~~~~g~~~v~AaGNg~~~~~~~~-----~~~~~~-------------g~~~----------------------- 237 (600)
T 3hjr_A 199 LFEQQTLKAQGAAYIKAAGNGFNKIAAGG-----YVLNRT-------------GNGP----------------------- 237 (600)
T ss_dssp HHHHHHHSTTCCEEEEECCSCSSEEEETT-----EEEEEE-------------SSCC-----------------------
T ss_pred HHHHhhhccCCcEEEEeccCccccccccc-----cccccC-------------CCCC-----------------------
Confidence 22222 2579999999999864211000 000000 0000
Q ss_pred CCCCCCcCCCccCCCCCCC-CCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhh
Q 005334 310 ANVSSTSSGNLCMTGSLIP-AKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKA 388 (701)
Q Consensus 310 ~~~~~~~~~~~C~~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~ 388 (701)
......|. +++ ......|.+.
T Consensus 238 -----~~~~~~~~---~d~~~~~~~~IsVg-------------------------------------------------- 259 (600)
T 3hjr_A 238 -----KLPFENSN---LDPSNSNFWNLVVS-------------------------------------------------- 259 (600)
T ss_dssp -----CCCSSBTT---SSGGGGSSSEEEEE--------------------------------------------------
T ss_pred -----CCCccccc---ccCccccCcceEEe--------------------------------------------------
Confidence 00000110 000 0000011110
Q ss_pred HHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcE-------E-ecccCCCCCC-
Q 005334 389 GDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNI-------L-AGWTGAVGPT- 459 (701)
Q Consensus 389 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I-------~-sa~~~~~~~~- 459 (701)
.....+.++.||++|+.. +++|||..+ . ...++.....
T Consensus 260 -------------------------A~~~~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt~~~pG~~~~~~ 306 (600)
T 3hjr_A 260 -------------------------ALNADGVRSSYSSVGSNI--------FLSATGGEYGTDTPAMVTTDLPGCDMGYN 306 (600)
T ss_dssp -------------------------EECTTSSBCTTCCBCTTC--------CEEEECCSCSSSSCCEEEECCSSTTSSSS
T ss_pred -------------------------eecCCCCEeecccCCcce--------eeccCCCCCCCCCcceeeecCCCcccccc
Confidence 013345788999999987 899998763 2 2222110000
Q ss_pred ------------CCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccc------
Q 005334 460 ------------GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLL------ 521 (701)
Q Consensus 460 ------------~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~------ 521 (701)
..........|..++|||||||||||++|||+|+||+||++|||++|++||++++....|+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~p~~~~~~~~ 386 (600)
T 3hjr_A 307 RTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSS 386 (600)
T ss_dssp STTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEEEECT
T ss_pred ccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCccccccccc
Confidence 00111223468899999999999999999999999999999999999999999986655421
Q ss_pred --------------cCCCCCCCCCCCCCccccCccccCCCCc
Q 005334 522 --------------DISTGQPSTPFDFGAGHVDPVAALDPGL 549 (701)
Q Consensus 522 --------------~~~~~~~~~~~~~G~G~vn~~~A~~~gl 549 (701)
.+..+..+ ...||||+||+.+|++.+.
T Consensus 387 ~~~~~~~~~~~~w~~N~aG~~~-s~~yGfG~vDA~~aV~~A~ 427 (600)
T 3hjr_A 387 TGKVRDVKGLEGWERNAAGMWF-SPTYGFGLIDVNKALELAA 427 (600)
T ss_dssp TSCEEEEEEECCSEECTTSCEE-BTTTBTCBCCHHHHHHHHT
T ss_pred ccccccccccCCcccccCCceE-ccccCCceecHHHHHHHhh
Confidence 11112222 3489999999999987443
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-24 Score=243.18 Aligned_cols=96 Identities=22% Similarity=0.349 Sum_probs=77.5
Q ss_pred eeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH---cCCeEEEEeccCCCCCC---ccCHHHHHHHHHHHCCCEEEEe
Q 005334 173 ARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE---DGVNVMSMSIGGGLTDY---YRDTVAIGAFTAMAQGIFVSCS 246 (701)
Q Consensus 173 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~---~gvdVInlSlG~~~~~~---~~d~i~~a~~~a~~~Gi~vV~A 246 (701)
+.||||+|+|+.|++. ....+++++|++|++ ++++|||+|||...... +...+..++.+|..+||+||+|
T Consensus 274 ~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv~A 349 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAA 349 (552)
T ss_dssp HHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 4799999999999974 356789999999998 79999999999864221 2245666677888999999999
Q ss_pred cCCCCCCC--------CccccCCCceEEecCCcc
Q 005334 247 AGNGGPYA--------NSISNVAPWITTVGAGTL 272 (701)
Q Consensus 247 AGN~G~~~--------~~~~~~ap~vitVgAst~ 272 (701)
|||+|... ...+..+|||++|||++.
T Consensus 350 sGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 350 AGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp CCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred cCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 99999643 345678999999999753
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-22 Score=213.86 Aligned_cols=99 Identities=21% Similarity=0.212 Sum_probs=80.6
Q ss_pred eeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH-cCCeEEEEeccCCCC----CCccCHHHHHHHHHHHCCCEEEEecC
Q 005334 174 RGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE-DGVNVMSMSIGGGLT----DYYRDTVAIGAFTAMAQGIFVSCSAG 248 (701)
Q Consensus 174 ~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~-~gvdVInlSlG~~~~----~~~~d~i~~a~~~a~~~Gi~vV~AAG 248 (701)
..+||+++++.|++.+..++..++++++|+||++ ++++|||||||.... ..+...+..++.+|..+||+||+|||
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 4578999999999987655778899999999998 899999999998531 12334667777788899999999999
Q ss_pred CCCCCCC-------------ccccCCCceEEecCCcc
Q 005334 249 NGGPYAN-------------SISNVAPWITTVGAGTL 272 (701)
Q Consensus 249 N~G~~~~-------------~~~~~ap~vitVgAst~ 272 (701)
|+|...+ ..+..+|||++||+++.
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 9997532 45568899999999754
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-10 Score=126.74 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=61.8
Q ss_pred eecCCCeEEEEEeecCCCCChHHHHHHHHHHH--HcCCeEEEEeccCCCCC---CccCHHHHHHHHHHHCCCEEEEecCC
Q 005334 175 GMAAQARVATYKVCWLAGCFGSDILAGMDKAI--EDGVNVMSMSIGGGLTD---YYRDTVAIGAFTAMAQGIFVSCSAGN 249 (701)
Q Consensus 175 GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai--~~gvdVInlSlG~~~~~---~~~d~i~~a~~~a~~~Gi~vV~AAGN 249 (701)
++++...++.|-.... ......++..+++.. .+-++|||+|||..... .+...+...+.++..+||.|++|+||
T Consensus 263 a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASGD 341 (544)
T 3edy_A 263 SAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGD 341 (544)
T ss_dssp HHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred ccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 4445555555533211 112234555444433 24688999999986422 22344555666788999999999999
Q ss_pred CCCCC----------CccccCCCceEEecCCcc
Q 005334 250 GGPYA----------NSISNVAPWITTVGAGTL 272 (701)
Q Consensus 250 ~G~~~----------~~~~~~ap~vitVgAst~ 272 (701)
+|... ...+..+|||++||+++.
T Consensus 342 ~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 342 SGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp STTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 99642 245678999999999753
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-08 Score=89.44 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=54.9
Q ss_pred cccHHHHHHHhhccccccccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceecc
Q 005334 5 FNDHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYEL 65 (701)
Q Consensus 5 ~~~h~~~~~~~l~~~~~~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~ 65 (701)
+.+|++|+.+++.+.....+++|+|++.|+||+++|+++++++|+++|+|.+|++|+.++.
T Consensus 53 ~~~h~~~l~s~~~~~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 53 SERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhhcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 5679999999987743467999999999999999999999999999999999999998764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.8e-07 Score=87.60 Aligned_cols=94 Identities=17% Similarity=0.154 Sum_probs=73.9
Q ss_pred CCCccCCCCCCCC-------CccceEEEEecCC-CchhhhhHHHhHcCceEEEEeecCCCCcc---c-cccccccceEEe
Q 005334 317 SGNLCMTGSLIPA-------KVAGKIVVCDRGG-NSRVEKGVEVKDAGGVGMILTNTDSYGEE---L-VADAQLLPSANV 384 (701)
Q Consensus 317 ~~~~C~~~~~~~~-------~~~gkiv~~~~g~-~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~-~~~~~~~p~~~i 384 (701)
....|.+...... ..+|||+|++||. |+|.+|..+++++||.++|++|+...+.. + ......||+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 4578987664322 2578999999999 99999999999999999999997532211 1 123357999999
Q ss_pred chhhHHHHHHhHhcCCCCeEEEEecc
Q 005334 385 GEKAGDAIKNYISSDPGPMATIISRG 410 (701)
Q Consensus 385 ~~~~g~~l~~~~~~~~~~~~~i~~~~ 410 (701)
+..+|+.|++++..+...+.+|.+..
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 99999999999999887777776643
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.28 E-value=9.2e-07 Score=72.95 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=43.7
Q ss_pred cccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceeccCCCC
Q 005334 22 SAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYELHTTR 69 (701)
Q Consensus 22 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~~~ 69 (701)
..+++|+|++ |+||+++++++++++|+++|+|.+||++..++++++.
T Consensus 33 g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 33 GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSAT 79 (80)
T ss_dssp TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEECCC-
T ss_pred CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEeeec
Confidence 5689999998 9999999999999999999999999999999988765
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.10 E-value=2.2e-06 Score=76.70 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=47.7
Q ss_pred cHHHHHHHhhccccccccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceecc
Q 005334 7 DHFEWYDSSLKSVSASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYEL 65 (701)
Q Consensus 7 ~h~~~~~~~l~~~~~~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~ 65 (701)
.|.+++.++++......+++|+|++.||||+++|+++++++|+++|+|.+|++++.++.
T Consensus 65 ~~~~~l~~~~~~r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 65 RTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 45555555443322356899999999999999999999999999999999999988764
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0001 Score=59.86 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=39.6
Q ss_pred cccEEEEec-ceeeEEEEEeCHHHHHHhhcC--CCeEEEEeCceecc
Q 005334 22 SAAMLYTYK-NVIHGFSTRLTAKEAESLQKQ--PGIVSVLPEVRYEL 65 (701)
Q Consensus 22 ~~~~~~~y~-~~~ng~s~~l~~~~~~~L~~~--p~V~~V~~~~~~~~ 65 (701)
..++.|.|+ .+|+||+++++++++++|+++ |.|.+||++..+++
T Consensus 29 gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 29 GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 357899994 799999999999999999999 88999999998764
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0022 Score=50.19 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=39.4
Q ss_pred cccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceec
Q 005334 22 SAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYE 64 (701)
Q Consensus 22 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 64 (701)
+.+++|+|. .+++++++|+++.++.|+++|+|++|++|...+
T Consensus 22 gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 22 GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp TCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred CCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 679999998 899999999999999999999999999998765
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.035 Score=60.23 Aligned_cols=70 Identities=23% Similarity=0.343 Sum_probs=57.7
Q ss_pred CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc--cc-ccccccceEEechhhHHHHHHhHh
Q 005334 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE--LV-ADAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~-~~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
..+++||||++.++.|.+..|..+++++||.|+|++++...... +. .....+|.+.++..+++.|+..+.
T Consensus 110 ~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 110 GKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred CCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 34799999999999999999999999999999999987632211 11 134678999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.063 Score=58.65 Aligned_cols=102 Identities=16% Similarity=0.233 Sum_probs=69.1
Q ss_pred CceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCc---------hhhh----hHHHhHcCceEEEEeecCC
Q 005334 301 GSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNS---------RVEK----GVEVKDAGGVGMILTNTDS 367 (701)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~---------~~~~----~~~~~~~Ga~g~i~~n~~~ 367 (701)
....++++..+. ..|.. ..+.+++|||||+.++.|. +..+ ..++.++||+|+|+++...
T Consensus 105 ~vta~lV~v~~~------~~~~~--~~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~ 176 (444)
T 3iib_A 105 GLSATIVRFDTL------QDLQN--AEAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGT 176 (444)
T ss_dssp CEEEEEEEESSH------HHHHT--SCTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCS
T ss_pred CeEEEEEecCCH------HHHhh--ccccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCC
Confidence 346778876421 12322 2356899999999998874 3333 3468999999999998643
Q ss_pred CCc--------cccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecc
Q 005334 368 YGE--------ELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRG 410 (701)
Q Consensus 368 ~~~--------~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 410 (701)
... ........+|++.|+..+++.|+..+..+...+.++....
T Consensus 177 ~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~~ 227 (444)
T 3iib_A 177 DHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVISLELGS 227 (444)
T ss_dssp CCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred cccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEee
Confidence 211 1111245799999999999999999987765555555443
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.042 Score=62.60 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=55.4
Q ss_pred CCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc------------------cc----------------c
Q 005334 329 AKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE------------------LV----------------A 374 (701)
Q Consensus 329 ~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~------------------~~----------------~ 374 (701)
-+++|||||+.+|.|.+..|..++.++||.|+|++++...... .. .
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~ 207 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 207 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSC
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccccc
Confidence 4799999999999999999999999999999999987532100 00 0
Q ss_pred cccccceEEechhhHHHHHHhHh
Q 005334 375 DAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 375 ~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
....||+..|+..+++.|+..+.
T Consensus 208 ~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 208 GLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCEEecCHHHHHHHHHHcc
Confidence 12368999999999999988764
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=94.36 E-value=0.037 Score=63.75 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=56.4
Q ss_pred CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCC----C---------------------------ccccc--
Q 005334 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSY----G---------------------------EELVA-- 374 (701)
Q Consensus 328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~----~---------------------------~~~~~-- 374 (701)
..+++|||+|+++|.|.+.+|..+++++||+|+|++++..+ + ..+.+
T Consensus 150 ~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ 229 (707)
T 3fed_A 150 GINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGY 229 (707)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTS
T ss_pred CCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCC
Confidence 35799999999999999999999999999999999985320 0 00000
Q ss_pred ---------------cccccceEEechhhHHHHHHhHhc
Q 005334 375 ---------------DAQLLPSANVGEKAGDAIKNYISS 398 (701)
Q Consensus 375 ---------------~~~~~p~~~i~~~~g~~l~~~~~~ 398 (701)
....||+..|+..+++.|+..+..
T Consensus 230 ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 230 PAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 124699999999999999998754
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.37 Score=42.34 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=51.4
Q ss_pred eeEEEEEEEeeCCCCCe-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeCCCCCeEEEEEEEE-cCCeEEE
Q 005334 616 STVKYTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWS-DGKHVVG 693 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~-~~~~~v~ 693 (701)
.+.+.+.+++|+|+... |+.... + -.+|+|....+ ++|++..++|+|.+.. ...+.+.|... ++...+.
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~---~--~F~i~P~~g~L-~pg~~~~i~V~F~P~~---~g~~~~~l~v~~~~g~~~~ 111 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTC---R--PFSIEPAIGTL-NVGESMQLEVEFEPQS---VGDHSGRLIVCYDTGEKVF 111 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECC---T--TEEEESSEEEE-CTTCEEEEEEEECCSS---SBCCCCBCEEEESSSCEEC
T ss_pred CeEEEEEEEEECCCCCEEEEEecC---C--CeEEECCcCEE-CCCCEEEEEEEEEcCC---CccEEEEEEEEECCCCEEE
Confidence 56788889999999877 876643 2 36678999999 6899999999998862 12345555554 5555554
Q ss_pred eeE
Q 005334 694 SPI 696 (701)
Q Consensus 694 ~P~ 696 (701)
+++
T Consensus 112 v~L 114 (122)
T 2ys4_A 112 VSL 114 (122)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.29 E-value=0.21 Score=60.65 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=23.2
Q ss_pred CCCCCCCEEEEEccCCCCCCCCccC
Q 005334 86 SEVQSEVIVGVLDTGVWPEIKSFDD 110 (701)
Q Consensus 86 ~~~G~gVvVgVIDtGId~~Hp~f~~ 110 (701)
.+.|+||+|||+||||||.+|-|.-
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq~ 56 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLET 56 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred CCCCCccEEEEEeCCCCCCCCccee
Confidence 6789999999999999999999974
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=81.61 E-value=0.94 Score=49.19 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=26.8
Q ss_pred cCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCC
Q 005334 416 QPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGA 455 (701)
Q Consensus 416 ~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 455 (701)
...+.++.||++||.. ||+|||++|+++++.+
T Consensus 181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g 212 (441)
T 1y9z_A 181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTVG 212 (441)
T ss_dssp CTTCCBCTTSCCCTTE--------EEEEECSSEEEECSTT
T ss_pred CCCCCCCccccCCCce--------EEEeccCCeeccccCC
Confidence 3456789999999865 9999999999998743
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 701 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 8e-47 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-14 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 2e-07 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 1e-12 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 4e-05 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 1e-11 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 1e-11 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-11 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-07 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-08 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 3e-11 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 3e-11 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 2e-05 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 1e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 4e-07 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 1e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 6e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 1e-05 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 7e-05 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 8e-05 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 169 bits (429), Expect = 8e-47
Identities = 80/480 (16%), Positives = 147/480 (30%), Gaps = 75/480 (15%)
Query: 90 SEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGT 149
+ ++D+G + G T P +++ HGT
Sbjct: 22 GNRTICIIDSGYDRSHNDLNA-------NNVTGTNN-------SGTGNWYQPGNNNAHGT 67
Query: 150 HTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDG 209
H + T A + N + G A + KV AG S L +
Sbjct: 68 HVAGTIAA-IANNEGVVGVMPN------QNANIHIVKVFNEAGWGYSSSLVAAIDTCVNS 120
Query: 210 VNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGA 269
+++ G + + + +AGN G + S + +V A
Sbjct: 121 GGANVVTMSLGGSGSTTTERNALNTHYNNGVLLI-AAAGNAGDSSYSYPASYDSVMSVAA 179
Query: 270 GTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPA 329
+ + + + V + S V + + T G + ++P
Sbjct: 180 VDSNLDHAAFSQYTDQ-----VEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPH 234
Query: 330 KVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAG 389
G S + G + N S+ + + + E+ G
Sbjct: 235 NRL------TPSGTSYAPAPINASATGALAECTVNGTSF-----SCGNMANKICLVERVG 283
Query: 390 DAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEIL--KPDLIAPGVN 447
+ +Y + ++ +S P P ++ D+ P V+
Sbjct: 284 NQGSSYPEINSTKACKTAG--------AKGIIVYSNSALPGLQNPFLVDANSDITVPSVS 335
Query: 448 ILAGWTGA----VGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIK 503
+ A +G + S++ + + +GTSM+ PHVSG+A L+ + HPE S S ++
Sbjct: 336 VDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVR 395
Query: 504 SALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLC 563
+AL TA G G ++ VAA YLD C
Sbjct: 396 AALNATAD------------DLSVAGRDNQTGYGMINAVAAK-----------AYLDESC 432
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 75.5 bits (184), Expect = 1e-14
Identities = 54/302 (17%), Positives = 92/302 (30%), Gaps = 43/302 (14%)
Query: 388 AGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVN 447
AG+ + P +I + VA FSSR + APGV
Sbjct: 295 AGNNTSDSHHQYPAGYPGVIQVAALDYYGGTFRVAGFSSRSDGV--------SVGAPGVT 346
Query: 448 ILAGWTG-----AVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAI 502
IL+ G G +++ GTSM+ PHV+G+ A+L P P I
Sbjct: 347 ILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQI 406
Query: 503 KSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFL 562
+ L TA+ NGNG D G G V AAL L V +F
Sbjct: 407 RKLLENTAFDFNGNGW------------DHDTGYGLVKLDAALQGPLPTQGGV---EEFQ 451
Query: 563 CALDYSSFQIKQATNRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTR 622
+ + +F + + D ++ + + + + Y
Sbjct: 452 VVVTDAK--------GNFGVPTVFVSMMRDNGSCYYAKTGPDGIARFPHIDSGT---YDI 500
Query: 623 TLTNVGTPTTYMVSVSSQS----TSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTT 678
+ + +S ++ + + E + + + +
Sbjct: 501 FVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASFVGFGVSPDATQLNVNFNSTLQV 560
Query: 679 SF 680
F
Sbjct: 561 KF 562
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 52.4 bits (124), Expect = 2e-07
Identities = 46/239 (19%), Positives = 73/239 (30%), Gaps = 34/239 (14%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
+IV V+DTGV + + G++ + +E GTH
Sbjct: 156 IIVAVVDTGVDGTHPDLEGQVIA----GYRPAFD-------EELPAGTDSSYGGSAGTHV 204
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG-------SDILAGMDK 204
+ T A G+A A++ + G + AG+
Sbjct: 205 AGTIAAK---------KDGKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIW 255
Query: 205 AIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWI 264
A + G VM+ S GG Y A V + N + P +
Sbjct: 256 ATDHGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVV--MVVSAGNNTSDSHHQYPAGYPGV 313
Query: 265 TTVGAGTLDRN---FPTYVSLGNGKSFS--GVSLYSRRPLSGSMVPIVDAANVSSTSSG 318
V A + S +G S GV++ S P S+ NV +T+ G
Sbjct: 314 IQVAALDYYGGTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGG 372
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 67.2 bits (162), Expect = 1e-12
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 18/123 (14%)
Query: 429 PNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAA 488
P +KPD++APG IL+ + + ++ + + GTSM+ P V+G A
Sbjct: 208 RGPTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMATPIVAGNVA 266
Query: 489 LLKAAHPE-----WSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVA 543
L+ + PS +K+AL+ A G + G G V
Sbjct: 267 QLREHFVKNRGITPKPSLLKAALIAGA------------ADIGLGYPNGNQGWGRVTLDK 314
Query: 544 ALD 546
+L+
Sbjct: 315 SLN 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 44.1 bits (102), Expect = 4e-05
Identities = 36/191 (18%), Positives = 60/191 (31%), Gaps = 25/191 (13%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
IV V DTG+ + + + + + D +GHGTH
Sbjct: 24 QIVAVADTGLDTGRNDSSM-----------HEAFRGKITALYALGRTNNANDTNGHGTHV 72
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG---SDILAGMDKAIED 208
A T +GMA QA + + G G S++ +A
Sbjct: 73 -----------AGSVLGNGSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSA 121
Query: 209 GVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVG 268
G + + S G + Y + + +AGN GP +IS +
Sbjct: 122 GARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAIT 181
Query: 269 AGTLDRNFPTY 279
G + P++
Sbjct: 182 VGATENLRPSF 192
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 64.1 bits (154), Expect = 1e-11
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Query: 438 KPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEW 497
++ APG ++ + W +N ISGTSM+ PHVSGLAA + A +P
Sbjct: 224 DIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 498 SPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVD 540
S + ++S L A S + G + G G
Sbjct: 271 SNTQLRSNLQERAKSVDIKGG-----YGAAIGDDYASGFGFAR 308
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.4 bits (155), Expect = 1e-11
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 463 SDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLD 522
+D R +GTS S P +G+ AL A+ + ++ ++ T+ + N
Sbjct: 246 TDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWAT 305
Query: 523 ISTGQPSTPFDFGAGHVDPVAALD 546
G+ + +G G +D A +
Sbjct: 306 NGVGRKVSHS-YGYGLLDAGAMVA 328
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 63.8 bits (154), Expect = 1e-11
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 36/160 (22%)
Query: 387 KAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGV 446
AG+ + SS G S + S A+FSS GP + D++APGV
Sbjct: 152 AAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGV 203
Query: 447 NILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSAL 506
+I + G + +GTSM+ PHV+G AAL+ + HP W+ + ++S+L
Sbjct: 204 SIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSL 250
Query: 507 MTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546
T F +G G ++ AA
Sbjct: 251 ENTTTKLG---------------DSFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 51.1 bits (121), Expect = 2e-07
Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 36/214 (16%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
V V V+D+G+ G G V +E+ +D++ HGTH
Sbjct: 26 VKVAVIDSGIDSSHPDLKVAG------GASMV-----------PSETNPFQDNNSHGTHV 68
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGV 210
+ G S G+A A + KV G S I+ G++ AI + +
Sbjct: 69 A---------GTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNM 119
Query: 211 NVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSIS----NVAPWITT 266
+V++MS+GG + A+A G+ V +AGN G +S + P +
Sbjct: 120 DVINMSLGGP---SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIA 176
Query: 267 VGAGTLDRNFPTYVSLGNGKSFS--GVSLYSRRP 298
VGA ++ S+G GVS+ S P
Sbjct: 177 VGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLP 210
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 62.7 bits (151), Expect = 2e-11
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 28/126 (22%)
Query: 420 VVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMS 479
V A S+ + + +++APG + + + ++ ++GTSM+
Sbjct: 176 VGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYP-------------TNTYATLNGTSMA 222
Query: 480 CPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHV 539
PHV+G AAL+ + HP S S +++ L +TA + F +G G +
Sbjct: 223 SPHVAGAAALILSKHPNLSASQVRNRLSSTA---------------TYLGSSFYYGKGLI 267
Query: 540 DPVAAL 545
+ AA
Sbjct: 268 NVEAAA 273
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 54.6 bits (130), Expect = 1e-08
Identities = 58/271 (21%), Positives = 103/271 (38%), Gaps = 42/271 (15%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
V V VLDTG+ + VG A D +GHGTH
Sbjct: 26 VKVAVLDTGIQASHPDLNV------------------VGGASFVAGEAYNTDGNGHGTHV 67
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGV 210
+ T A + G+A + KV +G S I++G++ A +G+
Sbjct: 68 AGTVA---------ALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGM 118
Query: 211 NVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPW----ITT 266
+V++MS+G + A A+G+ V +AGN G ++ + P +
Sbjct: 119 DVINMSLG---GASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIA 175
Query: 267 VGAGTLDRNFPTYVSLGNGKSFS--GVSLYSRRPLSGSMV---PIVDAANVSSTSSGNLC 321
VGA + N ++ S+G G +YS P + + + +V+ ++ L
Sbjct: 176 VGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILS 235
Query: 322 MTGSLIPAKVAGKIV--VCDRGGNSRVEKGV 350
+L ++V ++ G + KG+
Sbjct: 236 KHPNLSASQVRNRLSSTATYLGSSFYYGKGL 266
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.9 bits (151), Expect = 3e-11
Identities = 16/77 (20%), Positives = 29/77 (37%)
Query: 470 FNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPS 529
N GTS + P +G+ LL A+P + ++ + +A N S
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 530 TPFDFGAGHVDPVAALD 546
+G G +D ++
Sbjct: 317 YSHRYGFGKIDAHKLIE 333
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 62.3 bits (150), Expect = 3e-11
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 40/162 (24%)
Query: 384 VGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIA 443
V +G++ IS P A ++ G + A+FS G D++A
Sbjct: 147 VVAASGNSGAGSISY-PARYANAMAVG---ATDQNNNRASFSQYGAGL--------DIVA 194
Query: 444 PGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIK 503
PGVN+ + + G ++ ++GTSM+ PHV+G AAL+K +P WS I+
Sbjct: 195 PGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 504 SALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAAL 545
+ L TA S +G+G V+ AA
Sbjct: 242 NHLKNTATSLGSTNL---------------YGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 44.9 bits (105), Expect = 2e-05
Identities = 45/197 (22%), Positives = 72/197 (36%), Gaps = 36/197 (18%)
Query: 92 VIVGVLDTGVW--PEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGT 149
V V VLDTG+ P++ G S +D +GHGT
Sbjct: 26 VKVAVLDTGISTHPDLN---------------------IRGGASFVPGEPSTQDGNGHGT 64
Query: 150 HTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED 208
H G S G+A A + KV +G S I G++ A +
Sbjct: 65 HV---------AGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNN 115
Query: 209 GVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVG 268
G++V ++S + T+ +A ++G+ V ++GN G + S VG
Sbjct: 116 GMHVANLS---LGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVG 172
Query: 269 AGTLDRNFPTYVSLGNG 285
A + N ++ G G
Sbjct: 173 ATDQNNNRASFSQYGAG 189
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 54.2 bits (129), Expect = 1e-08
Identities = 42/225 (18%), Positives = 71/225 (31%), Gaps = 28/225 (12%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
+ V+DTGV D + + D P D + HGTH
Sbjct: 33 QEIAVIDTGVDYTHPDLDG----------------KVIKGYDFVDNDYDPMDLNNHGTHV 76
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGV 210
+ AA N GMA R+ + G SDI + A + G
Sbjct: 77 AGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGA 128
Query: 211 NVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAG 270
V+++S+G + A +G V +AGN G + VGA
Sbjct: 129 EVINLSLGCDCHTTTLENA---VNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAV 185
Query: 271 TLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSST 315
++ + G + ++G+ + +++S
Sbjct: 186 DQYDRLASFSNYGTWVDVVAPGVDIVSTITGNRYAYMSGTSMASP 230
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 49.6 bits (117), Expect = 4e-07
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 470 FNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPS 529
+ +SGTSM+ PHV+GLAALL + + I+ A+ TA +G G
Sbjct: 219 YAYMSGTSMASPHVAGLAALLASQGR--NNIEIRQAIEQTADKISGTGT----------- 265
Query: 530 TPFDFGAGHVDPVAALD 546
F G ++ A+
Sbjct: 266 ---YFKYGRINSYNAVT 279
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 467 HVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
S ISGTSM+ PHV+GLAA L + SA + + TA
Sbjct: 214 GGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTA 256
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 49.3 bits (116), Expect = 6e-07
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 467 HVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTG 526
++ +SGTSM+ PHV+G+A LL + S S I++A+ TA +G G
Sbjct: 215 TSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISGTGT-------- 264
Query: 527 QPSTPFDFGAGHVDPVAALD 546
+ G V+ A+
Sbjct: 265 ------YWAKGRVNAYKAVQ 278
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 45.1 bits (105), Expect = 1e-05
Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 25/189 (13%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
+ ++DTGV + VG D +P++ +GHGTH
Sbjct: 32 AKIAIVDTGVQSNHPDLAG----------------KVVGGWDFVDNDSTPQNGNGHGTHC 75
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGV 210
+ AA N G A +A + +V +G + + G+ A + G
Sbjct: 76 AGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGA 127
Query: 211 NVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAG 270
V+S+S+GG + + A+ + + + +AGN P + + A + +
Sbjct: 128 KVISLSLGGTVGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN 187
Query: 271 TLDRNFPTY 279
+F TY
Sbjct: 188 DNKSSFSTY 196
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 43.1 bits (100), Expect = 7e-05
Identities = 35/299 (11%), Positives = 74/299 (24%), Gaps = 32/299 (10%)
Query: 83 FPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPR 142
++ + VG++ G + + A G ++
Sbjct: 18 ASSAPTAANTTVGIITIGGVSQTLQDLQQ-------------FTSANGLASVNTQTIQTG 64
Query: 143 DDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFG-SDILAG 201
+G + ++ + G A A G + +
Sbjct: 65 SSNGDYSDDQQGQGEWDLDSQ--------SIVGSAGGAVQQLLFYMADQSASGNTGLTQA 116
Query: 202 MDKAIED-GVNVMSMSIG----GGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANS 256
++A+ D V+++S+G D TA AQG S S+G+ G Y +
Sbjct: 117 FNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECN 176
Query: 257 ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTS 316
T + V + S + + + + N +
Sbjct: 177 NRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNETVWNEGLDS-----NGKLWA 231
Query: 317 SGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVAD 375
+G P+ + R + + G L +
Sbjct: 232 TGGGYSVYESKPSWQSVVSGTPGRRLLPDISFDAAQGTGALIYNYGQLQQIGGTSLASP 290
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 43.2 bits (100), Expect = 8e-05
Identities = 31/248 (12%), Positives = 60/248 (24%), Gaps = 33/248 (13%)
Query: 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151
+ ++ G + S + +A DG
Sbjct: 26 QCIAIIALGGGYDETSLAQ-----------------YFASLGVSAPQVVSVSVDGATNQP 68
Query: 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVN 211
+ G A +A A++A Y F + + +
Sbjct: 69 TGDPNGPDGEVELDIEVAG----ALAPGAKIAVYFAPNTDAGF-LNAITTAVHDPTHKPS 123
Query: 212 VMSMSIGGGLTDY---YRDTVAIGAFTAMAQGIFVSCSAGNGG--------PYANSISNV 260
++S+S GG + + A A G+ V +AG+ G Y
Sbjct: 124 IVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAA 183
Query: 261 APWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNL 320
+P++ G L + +P S+
Sbjct: 184 SPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSWQERANVPPSANPG 243
Query: 321 CMTGSLIP 328
+G +P
Sbjct: 244 AGSGRGVP 251
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 701 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 97.77 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 97.31 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.36 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.18 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 95.37 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=3.3e-50 Score=464.37 Aligned_cols=344 Identities=28% Similarity=0.305 Sum_probs=251.0
Q ss_pred cccEEEEecceeeEEEEEeCHHHH----H--HhhcCCCeEEEEeCceeccCCC----CCC--------------------
Q 005334 22 SAAMLYTYKNVIHGFSTRLTAKEA----E--SLQKQPGIVSVLPEVRYELHTT----RTP-------------------- 71 (701)
Q Consensus 22 ~~~~~~~y~~~~ng~s~~l~~~~~----~--~L~~~p~V~~V~~~~~~~~~~~----~s~-------------------- 71 (701)
..++++.+. .++.+.++++...+ + ++..+|+|++|+|+...++... ..+
T Consensus 52 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (671)
T d1r6va_ 52 NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE 130 (671)
T ss_dssp TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCcc
Confidence 356777776 57778888764322 2 2335899999999866554210 000
Q ss_pred ---cccCCCCC--CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCC
Q 005334 72 ---EFLGLGKS--ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDG 146 (701)
Q Consensus 72 ---~~~gl~~~--~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~g 146 (701)
..|++..+ ..+|....+|+||+|||||||||++||+|.++.. .+ |+.... .......++.|..|
T Consensus 131 ~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~~~~-------~~--~~~~~~--~~~~~~~~~~d~~g 199 (671)
T d1r6va_ 131 LSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQVI-------AG--YRPAFD--EELPAGTDSSYGGS 199 (671)
T ss_dssp TGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSGGGTTTBC-------CE--EEGGGT--EEECTTCBCCTTCS
T ss_pred ccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCChhhcCCcc-------cC--cccccc--CCCCCCCcCcccCC
Confidence 11222221 2233345689999999999999999999987622 11 111111 01112234667889
Q ss_pred ChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCC------C-CChHHHHHHHHHHHHcCCeEEEEeccC
Q 005334 147 HGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLA------G-CFGSDILAGMDKAIEDGVNVMSMSIGG 219 (701)
Q Consensus 147 HGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~------g-~~~~~i~~ai~~ai~~gvdVInlSlG~ 219 (701)
|||||||||||+... ..+.||||+|+|+++|++++. + .....+++||+||+++|++|||||||+
T Consensus 200 HGT~VAGiiaa~~~~---------~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~ 270 (671)
T d1r6va_ 200 AGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGG 270 (671)
T ss_dssp HHHHHHHHHHCCCSS---------SSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEB
T ss_pred CCccccceeeeeccc---------cceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccc
Confidence 999999999997421 124899999999999999642 3 566789999999999999999999998
Q ss_pred CCCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCC-CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCC
Q 005334 220 GLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA-NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP 298 (701)
Q Consensus 220 ~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~ 298 (701)
.. ....+..++..|.++|+++|+||||++... ...+...|++|+|||.+...
T Consensus 271 ~~---~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~------------------------ 323 (671)
T d1r6va_ 271 WG---YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------------------------ 323 (671)
T ss_dssp SC---CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET------------------------
T ss_pred cc---CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC------------------------
Confidence 43 345667777889999999999999998754 45677889999999842110
Q ss_pred CCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccc
Q 005334 299 LSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQL 378 (701)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 378 (701)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCC
Q 005334 379 LPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGP 458 (701)
Q Consensus 379 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 458 (701)
....++.||+|||.. ||+|||++|+++++.....
T Consensus 324 --------------------------------------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~ 357 (671)
T d1r6va_ 324 --------------------------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSI 357 (671)
T ss_dssp --------------------------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTST
T ss_pred --------------------------------------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCcc
Confidence 011678999999976 9999999999998754322
Q ss_pred CCC-----CCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCC
Q 005334 459 TGL-----ESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFD 533 (701)
Q Consensus 459 ~~~-----~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 533 (701)
... ........|..++|||||||||||++|||+|++|+|++.+||++|++||++++..+ .+..
T Consensus 358 ~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g------------~~~~ 425 (671)
T d1r6va_ 358 GYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG------------WDHD 425 (671)
T ss_dssp TCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS------------CBTT
T ss_pred ccccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC------------CCCC
Confidence 111 11123457999999999999999999999999999999999999999999875332 2348
Q ss_pred CCccccCccccCCCCccc
Q 005334 534 FGAGHVDPVAALDPGLVY 551 (701)
Q Consensus 534 ~G~G~vn~~~A~~~glv~ 551 (701)
||||+||+.+|++..+..
T Consensus 426 ~G~G~vna~~Av~~~~~~ 443 (671)
T d1r6va_ 426 TGYGLVKLDAALQGPLPT 443 (671)
T ss_dssp TBTCBCCHHHHHHCCCCS
T ss_pred cccChhCHHHHhhCcCCC
Confidence 999999999999865543
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1e-49 Score=440.10 Aligned_cols=373 Identities=25% Similarity=0.326 Sum_probs=237.2
Q ss_pred CCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccccc
Q 005334 81 TLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVV 160 (701)
Q Consensus 81 ~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~ 160 (701)
.+|. .+|+||+|||||||||++||+|.++... + ++ .....+..++.|.+||||||||||||+..
T Consensus 15 ~~~~--~~G~gv~VaviDtGid~~Hp~~~~~~~~-------~--~~-----~~~~~~~~~~~d~~gHGThvAgiiag~~~ 78 (435)
T d1v6ca_ 15 VLSD--SQAGNRTICIIDSGYDRSHNDLNANNVT-------G--TN-----NSGTGNWYQPGNNNAHGTHVAGTIAAIAN 78 (435)
T ss_dssp GSCC--TTGGGCEEEEEESCCCTTSTTTTTSEEE-------E--CC-----CTTSCCTTCCCSSCCHHHHHHHHHHCCCS
T ss_pred hhhh--cCCCCcEEEEEcCCCCCCChhhccCeee-------e--ec-----cCCCCCCCCCCCCCCcHHHHHHHHhccCC
Confidence 3554 4799999999999999999999875211 1 11 11122344578899999999999999752
Q ss_pred CCCcccccCCCceeeecC--CCeEEEEEeecCCC-CChHHHHHHHHHHHH-cCCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334 161 NGASLFGFASGTARGMAA--QARVATYKVCWLAG-CFGSDILAGMDKAIE-DGVNVMSMSIGGGLTDYYRDTVAIGAFTA 236 (701)
Q Consensus 161 ~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~-~gvdVInlSlG~~~~~~~~d~i~~a~~~a 236 (701)
. .| +.|||| +++|+.+|++.... +...++++||+++++ .|++|||+|||... ....+..++..+
T Consensus 79 ~----~g-----~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~~~---~~~~~~~a~~~~ 146 (435)
T d1v6ca_ 79 N----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSG---STTTERNALNTH 146 (435)
T ss_dssp S----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSC---CBHHHHHHHHHH
T ss_pred C----Cc-----eEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccCCCC---CCHHHHhhhhhc
Confidence 2 12 489999 89999999998764 677789999999996 59999999999854 234556677788
Q ss_pred HHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEE--EEEEeecCCCCCCceeeE-EEcCCCC
Q 005334 237 MAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSF--SGVSLYSRRPLSGSMVPI-VDAANVS 313 (701)
Q Consensus 237 ~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~--~g~s~~~~~~~~~~~~~l-~~~~~~~ 313 (701)
.++|+++|+||||+|+...+.++.++++|+|||++.+........++....+ +|..++.........+.. .......
T Consensus 147 ~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~ 226 (435)
T d1v6ca_ 147 YNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSY 226 (435)
T ss_dssp HHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEECSTTCEEEEEEEETTEEC
T ss_pred cccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceeeeeecCCCcccccccCCcee
Confidence 9999999999999999988888999999999998766543221111111111 011111000000000000 0000000
Q ss_pred C-----------CcCCCc---------------c--CCCCCCCCCccceEEEEecCCC-----chhhhhHHHhHcCceEE
Q 005334 314 S-----------TSSGNL---------------C--MTGSLIPAKVAGKIVVCDRGGN-----SRVEKGVEVKDAGGVGM 360 (701)
Q Consensus 314 ~-----------~~~~~~---------------C--~~~~~~~~~~~gkiv~~~~g~~-----~~~~~~~~~~~~Ga~g~ 360 (701)
. ...... | ....+....+.+++.++.+... ............++.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (435)
T d1v6ca_ 227 FSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGI 306 (435)
T ss_dssp GGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEE
T ss_pred eccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccCCccccceeeeeceeecccCCcce
Confidence 0 000000 0 0011112233444444443211 12222333333333333
Q ss_pred EEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCC--CCCCC
Q 005334 361 ILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPIT--PEILK 438 (701)
Q Consensus 361 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~--~~~lK 438 (701)
+. .+++.+|.... ....|
T Consensus 307 ~~------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 326 (435)
T d1v6ca_ 307 IV------------------------------------------------------------YSNSALPGLQNPFLVDAN 326 (435)
T ss_dssp EE------------------------------------------------------------ECCSSSCSCCCCEEECTT
T ss_pred EE------------------------------------------------------------eccCCCCCcCCccccccC
Confidence 32 23333333321 25679
Q ss_pred CcEEecCCcEEecccCCCCC----CCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 005334 439 PDLIAPGVNILAGWTGAVGP----TGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTN 514 (701)
Q Consensus 439 PDI~APG~~I~sa~~~~~~~----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~ 514 (701)
|||.+||..|.+++...... ...........|..|||||||||||||++|||||+||+||+++||++||+||++++
T Consensus 327 ~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~ 406 (435)
T d1v6ca_ 327 SDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLS 406 (435)
T ss_dssp CCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCS
T ss_pred CceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccC
Confidence 99999999887664321000 00001112346999999999999999999999999999999999999999999774
Q ss_pred CCCcccccCCCCCCCCCCCCCccccCccccCCCCccccCChhhHHhhhhc
Q 005334 515 GNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCA 564 (701)
Q Consensus 515 ~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~glv~d~~~~dy~~~lc~ 564 (701)
.++++++||+|+||+.+|++ ||...|.
T Consensus 407 ------------~~~~~~~~G~G~vn~~~A~~-----------~l~~~~~ 433 (435)
T d1v6ca_ 407 ------------VAGRDNQTGYGMINAVAAKA-----------YLDESCT 433 (435)
T ss_dssp ------------SSSCBTTTBTCBCCHHHHHH-----------HHHHCTT
T ss_pred ------------CCCCCCCcccceecHHHHHH-----------HHHhcCC
Confidence 23456799999999999965 8888775
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=1.1e-47 Score=398.54 Aligned_cols=264 Identities=30% Similarity=0.359 Sum_probs=209.9
Q ss_pred cCCCC--CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHH
Q 005334 74 LGLGK--SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT 151 (701)
Q Consensus 74 ~gl~~--~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThv 151 (701)
|+++. ++.+|+++.+|+||+|||||||||++||+|.++. ..+.+ .......+.|..+|||||
T Consensus 13 w~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~~-------~~~~~---------~~~~~~~~~d~~~HGT~v 76 (280)
T d1dbia_ 13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKV-------IKGYD---------FVDNDYDPMDLNNHGTHV 76 (280)
T ss_dssp CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTTE-------EEEEE---------TTTTBSCCCCSSSHHHHH
T ss_pred cChhhCCHHHHHhccCCCCCeEEEEEccCcCCCChhhcCCe-------eeccc---------ccCCCCccccccccccce
Confidence 44443 3569999999999999999999999999998752 11111 112233467899999999
Q ss_pred HHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHH
Q 005334 152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVA 230 (701)
Q Consensus 152 AgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~ 230 (701)
||+|+|.... .+.+.||||+|+|+.+|+++..+ +...++++||++++++|++|||+|||... ..+...
T Consensus 77 ag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~---~~~~~~ 145 (280)
T d1dbia_ 77 AGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC---HTTTLE 145 (280)
T ss_dssp HHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC---CCHHHH
T ss_pred eEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccccccc---cchhHH
Confidence 9999987533 23358999999999999998766 78899999999999999999999999853 234455
Q ss_pred HHHHHHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcC
Q 005334 231 IGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAA 310 (701)
Q Consensus 231 ~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~ 310 (701)
.+...+.++|+++|+||||+|......+...|++|+|||.+
T Consensus 146 ~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~--------------------------------------- 186 (280)
T d1dbia_ 146 NAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD--------------------------------------- 186 (280)
T ss_dssp HHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC---------------------------------------
T ss_pred HHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeec---------------------------------------
Confidence 66678899999999999999987777778889999999831
Q ss_pred CCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHH
Q 005334 311 NVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGD 390 (701)
Q Consensus 311 ~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~ 390 (701)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T d1dbia_ 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCccccee
Q 005334 391 AIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSF 470 (701)
Q Consensus 391 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 470 (701)
..+.++.||++||.. |++|||.+|++..... .|
T Consensus 187 --------------------------~~~~~a~~S~~g~~~--------d~~apg~~i~~~~~~~-------------~~ 219 (280)
T d1dbia_ 187 --------------------------QYDRLASFSNYGTWV--------DVVAPGVDIVSTITGN-------------RY 219 (280)
T ss_dssp --------------------------TTSCBCTTBCCSTTC--------CEEEECSSEEEEETTT-------------EE
T ss_pred --------------------------CCCCcCCcCCCCCcc--------cccCCccceeccccCc-------------ce
Confidence 122678899999876 9999999999988764 79
Q ss_pred EeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 471 NIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 471 ~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
..++|||||||+|||++|||++. .+++.+||++|++||+++.. +...||+|+||+.+||+
T Consensus 220 ~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~--------------~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 220 AYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG--------------TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT--------------BTTTBSSEECCHHHHHT
T ss_pred eccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC--------------CCCcCCCCeEcHHHHcC
Confidence 99999999999999999999995 55899999999999987642 12379999999999986
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=5.2e-47 Score=392.46 Aligned_cols=256 Identities=29% Similarity=0.415 Sum_probs=209.9
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
..+|.++++|+||+|||||||||++||+|+.. .+.+ .......+.|.+||||||||||++..
T Consensus 14 ~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~~---------~~~~---------~~~~~~~~~d~~gHGT~vAgii~~~~ 75 (274)
T d1r0re_ 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNVV---------GGAS---------FVAGEAYNTDGNGHGTHVAGTVAALD 75 (274)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE---------EEEE---------CSTTCCTTCCSSSHHHHHHHHHHCCS
T ss_pred HHHHHcCCCCCCeEEEEECCCCCCCChhhccc---------CCcc---------ccCCCCCCCCcccccccccccccccc
Confidence 45899999999999999999999999999532 1111 11222346788899999999999875
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMA 238 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~ 238 (701)
... ...|+||+|+|+.+|+++..+ +..++++++++++.+++++|+|+|||.... .........++.+
T Consensus 76 ~~~---------~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~~---~~~~~~~~~~a~~ 143 (274)
T d1r0re_ 76 NTT---------GVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG---STAMKQAVDNAYA 143 (274)
T ss_dssp SSS---------BCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSSC---CHHHHHHHHHHHH
T ss_pred ccc---------cccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceeccccccccc---hhhhhHHHHHHhh
Confidence 321 237999999999999998776 678899999999999999999999998543 3445556668889
Q ss_pred CCCEEEEecCCCCCCCC----ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCC
Q 005334 239 QGIFVSCSAGNGGPYAN----SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSS 314 (701)
Q Consensus 239 ~Gi~vV~AAGN~G~~~~----~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~ 314 (701)
+++++|+||||+|.... ..+...|++|+|||.+
T Consensus 144 ~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~------------------------------------------- 180 (274)
T d1r0re_ 144 RGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD------------------------------------------- 180 (274)
T ss_dssp TTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC-------------------------------------------
T ss_pred CceEEEeeccCCCCCCCcccccccccCCCEEEEEeEC-------------------------------------------
Confidence 99999999999986532 3445677888888732
Q ss_pred CcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHH
Q 005334 315 TSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKN 394 (701)
Q Consensus 315 ~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 394 (701)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T d1r0re_ 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeec
Q 005334 395 YISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIIS 474 (701)
Q Consensus 395 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 474 (701)
..+.++.||++||. |||+|||++|+++...+ .|..++
T Consensus 181 ----------------------~~~~~~~~s~~g~~--------~di~APG~~i~~~~~~~-------------~~~~~s 217 (274)
T d1r0re_ 181 ----------------------SNSNRASFSSVGAE--------LEVMAPGAGVYSTYPTN-------------TYATLN 217 (274)
T ss_dssp ----------------------TTSCBCTTCCCSTT--------EEEEEECSSEEEEETTT-------------EEEEEC
T ss_pred ----------------------CCCCcccccCCCCC--------EEEEecCCCcccccCCC-------------CeEeec
Confidence 11266889999984 59999999999998764 789999
Q ss_pred cccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 475 GTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 475 GTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
|||||||+|||++|||+|++|+|++++||++|++||+++.. .+.||+|+||+.+|++
T Consensus 218 GTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~---------------~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 218 GTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGS---------------SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp SHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCSC---------------HHHHTTCBCCHHHHTC
T ss_pred CCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC---------------CCceEcCeecHHHhcC
Confidence 99999999999999999999999999999999999987631 2389999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1.8e-46 Score=389.36 Aligned_cols=258 Identities=27% Similarity=0.388 Sum_probs=214.7
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
++.+|+.+ +|+||+|+|||||||++||+|.++.. .+ + +.......+.|..+||||||++|++.
T Consensus 20 a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~~~-------~~--~-------~~~~~~~~~~d~~~HGT~vag~i~~~ 82 (279)
T d1thma_ 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVV-------GG--W-------DFVDNDSTPQNGNGHGTHCAGIAAAV 82 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTTEE-------EE--E-------ETTTTBSCCCCSSSHHHHHHHHHHCC
T ss_pred HHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCCee-------cc--c-------cccccCcccccccccccccceeeeec
Confidence 35689887 89999999999999999999987521 11 1 11223345778899999999999998
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAM 237 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~ 237 (701)
...+ ..+.|+||+|+|+.+|++...+ +...+++++|+++++.+++|+|+|||... .......+...+.
T Consensus 83 ~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~---~~~~~~~a~~~a~ 151 (279)
T d1thma_ 83 TNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV---GNSGLQQAVNYAW 151 (279)
T ss_dssp CSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS---CCHHHHHHHHHHH
T ss_pred cCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCccc---cchhHHHHHHHHH
Confidence 5332 3358999999999999998776 78889999999999999999999999853 3345566667888
Q ss_pred HCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcC
Q 005334 238 AQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSS 317 (701)
Q Consensus 238 ~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (701)
++|+++|+|+||+|......+...|++++|||++
T Consensus 152 ~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~---------------------------------------------- 185 (279)
T d1thma_ 152 NKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD---------------------------------------------- 185 (279)
T ss_dssp HTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC----------------------------------------------
T ss_pred hcCceEEEeccccccCCCcccccccccccccccc----------------------------------------------
Confidence 9999999999999988877788889999999832
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHh
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d1thma_ 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecccc
Q 005334 398 SDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTS 477 (701)
Q Consensus 398 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 477 (701)
..+.++.||++|+.. ||.|||.+|+++.+.+ .|..++|||
T Consensus 186 -------------------~~~~~~~~S~~G~~~--------di~Apg~~i~~~~~~~-------------~~~~~sGTS 225 (279)
T d1thma_ 186 -------------------QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPTS-------------TYASLSGTS 225 (279)
T ss_dssp -------------------TTSCBCTTCCCCTTC--------CEEEECSSEEEEETTT-------------EEEEECSHH
T ss_pred -------------------CCCCCccccCCCceE--------EEeeeeeccccccCcc-------------cccccCCcc
Confidence 122678899999986 9999999999998775 799999999
Q ss_pred chhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 478 MSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 478 mAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
||||||||++|||+|.+| ++.+||++|++||+++.. ....||+|+||+.+|++
T Consensus 226 ~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g--------------~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 226 MATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG--------------TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp HHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT--------------BTTTBSSEECCHHHHHH
T ss_pred hhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC--------------CCCcceeeeEcHHHhhC
Confidence 999999999999999765 789999999999987641 22389999999999985
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=1.1e-46 Score=389.04 Aligned_cols=256 Identities=31% Similarity=0.422 Sum_probs=213.7
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
+..+|..+++|+||+||||||||+ +||+|.... +. +.......+.|.++|||||||+|++.
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~~---------~~---------~~~~~~~~~~d~~~HGT~vAgii~~~ 73 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNIRG---------GA---------SFVPGEPSTQDGNGHGTHVAGTIAAL 73 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEEE---------EE---------ECSTTCCSCSCSSSHHHHHHHHHHCC
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCccc---------cc---------cccCCCCCccccchhhheeccccccc
Confidence 356999999999999999999998 899996431 11 11122335678899999999999987
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAM 237 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~ 237 (701)
... ....|+||+|+|+.+|++...+ .....+.+++++++.+++++||+|||... .......+...+.
T Consensus 74 ~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~---~~~~~~~a~~~a~ 141 (269)
T d1gcia_ 74 NNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS---PSATLEQAVNSAT 141 (269)
T ss_dssp CSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS---CCHHHHHHHHHHH
T ss_pred CCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccc---ccchHHHHHHhhc
Confidence 422 2247999999999999998776 67778999999999999999999999753 2344555667889
Q ss_pred HCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcC
Q 005334 238 AQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSS 317 (701)
Q Consensus 238 ~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (701)
++|++||+||||+|......+...|++|+|||.+
T Consensus 142 ~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~---------------------------------------------- 175 (269)
T d1gcia_ 142 SRGVLVVAASGNSGAGSISYPARYANAMAVGATD---------------------------------------------- 175 (269)
T ss_dssp HTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC----------------------------------------------
T ss_pred cCceEEEeccCCCCCCCccCccccCCceEEEEEc----------------------------------------------
Confidence 9999999999999988778888899999999832
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHh
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
T Consensus 176 -------------------------------------------------------------------------------- 175 (269)
T d1gcia_ 176 -------------------------------------------------------------------------------- 175 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecccc
Q 005334 398 SDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTS 477 (701)
Q Consensus 398 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 477 (701)
..+.++.||++||.. ||+|||.++..+.... .|..++|||
T Consensus 176 -------------------~~~~~~~~S~~G~~~--------di~Apg~~~~~~~~~~-------------~~~~~sGTS 215 (269)
T d1gcia_ 176 -------------------QNNNRASFSQYGAGL--------DIVAPGVNVQSTYPGS-------------TYASLNGTS 215 (269)
T ss_dssp -------------------TTSCBCTTCCCSTTE--------EEEEECSSEEEEETTT-------------EEEEECSHH
T ss_pred -------------------cCCCcccccCCCCCc--------eEEEeeecceeccCCC-------------ceEecCCcc
Confidence 112667899999875 9999999999988764 799999999
Q ss_pred chhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 478 MSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 478 mAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
||||+|||++|||+|++|+|++++||++|++||+++.. ...||+|+||+++|++
T Consensus 216 ~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~---------------~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 216 MATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS---------------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC---------------HHHHTTCBCCHHHHTC
T ss_pred hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC---------------CCCcccCeEcHHHhcC
Confidence 99999999999999999999999999999999987642 1278999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=8.7e-47 Score=392.23 Aligned_cols=258 Identities=31% Similarity=0.457 Sum_probs=211.2
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
++.+|+++++|+||+|||||||||++||+|+... +.++ . ..+.....+..+|||||||||+|.
T Consensus 13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~~---------~~~~--~------~~~~~~~~~~~~HGT~vAgiiag~ 75 (281)
T d1to2e_ 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG---------GASM--V------PSETNPFQDNNSHGTHVAGTVAAL 75 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEEE---------EEEC--C------TTCCCTTCCSSSHHHHHHHHHHCC
T ss_pred cHHHHHCCCCCCCeEEEEECCCCCCCChhhhhcC---------Cccc--c------CCCCCCCcCcCCCCceeecccccC
Confidence 4569999999999999999999999999996431 1111 0 011112234678999999999987
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAM 237 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~ 237 (701)
... ....|+||+|+|+.+|++..++ ....+++++|+++++.+++|+|+|||.. .....+..++..+.
T Consensus 76 ~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~---~~~~~~~~ai~~~~ 143 (281)
T d1to2e_ 76 NNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP---SGSAALKAAVDKAV 143 (281)
T ss_dssp SSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBS---CCCHHHHHHHHHHH
T ss_pred CCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCCC---cchHHHHHHHHHHH
Confidence 422 1247999999999999998776 6788899999999999999999999974 34456777778899
Q ss_pred HCCCEEEEecCCCCCCC----CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCC
Q 005334 238 AQGIFVSCSAGNGGPYA----NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVS 313 (701)
Q Consensus 238 ~~Gi~vV~AAGN~G~~~----~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~ 313 (701)
++|+++|+||||+|... ...+...+++|+|||.+
T Consensus 144 ~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~------------------------------------------ 181 (281)
T d1to2e_ 144 ASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD------------------------------------------ 181 (281)
T ss_dssp HTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC------------------------------------------
T ss_pred hcCCcceecccCcccCCCCCCccCCCCCCceEEEEeec------------------------------------------
Confidence 99999999999998653 23455678888888732
Q ss_pred CCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 005334 314 STSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIK 393 (701)
Q Consensus 314 ~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 393 (701)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T d1to2e_ 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEee
Q 005334 394 NYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNII 473 (701)
Q Consensus 394 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 473 (701)
..+.++.||++||.. |+.|||.+|+++.+.+ .|..+
T Consensus 182 -----------------------~~~~~~~~S~~G~~~--------d~~apG~~i~s~~~~~-------------~~~~~ 217 (281)
T d1to2e_ 182 -----------------------SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAY 217 (281)
T ss_dssp -----------------------TTSCBCTTCCCSTTC--------CEEEECSSEEEEETTT-------------EEEEE
T ss_pred -----------------------CCCCCCcccCCCCCc--------cccCCCCCceeecCCC-------------eeEcc
Confidence 112667899999976 9999999999998764 78999
Q ss_pred ccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 474 SGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 474 sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
+|||||||+|||++|||+|++|+|++++||++|++||+++.. ...||+|+||+.+|++
T Consensus 218 ~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~---------------~~~~G~G~ld~~~A~~ 275 (281)
T d1to2e_ 218 NGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD---------------SFYYGKGLINVQAAAQ 275 (281)
T ss_dssp CBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC---------------HHHHTTCBCCHHHHTS
T ss_pred cCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC---------------CCCcccCcccHHHHHh
Confidence 999999999999999999999999999999999999997641 2279999999999998
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=8.3e-42 Score=359.03 Aligned_cols=287 Identities=26% Similarity=0.329 Sum_probs=211.5
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
++.+|..+++|+||+|||||||||++||+|.++. +.+ ++.... .........|..||||||||||+|.
T Consensus 15 ~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~~-------~~~--~~~~~~---~~~~~~~~~d~~gHGT~VAgiiaa~ 82 (309)
T d2ixta1 15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNV-------EQC--KDFTGA---TTPINNSCTDRNGHGTHVAGTALAD 82 (309)
T ss_dssp TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTTE-------EEE--EESSSS---SSCEETCCCCSSSHHHHHHHHHHCB
T ss_pred ChhhhccCCCCCCeEEEEEccCCCCCChhHhccc-------ccc--ccccCC---CCCCCCCcccccccccccccccccc
Confidence 4679999999999999999999999999998752 111 111110 1111234567889999999999987
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc-----CCeEEEEeccCCCCCCccCHHHHH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED-----GVNVMSMSIGGGLTDYYRDTVAIG 232 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~-----gvdVInlSlG~~~~~~~~d~i~~a 232 (701)
...+ ...+.||||+|+|+.+|++...+ +...+++.+++++++. ...|+|+|++... .......+
T Consensus 83 ~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~s~~~~~---~~~~~~~~ 152 (309)
T d2ixta1 83 GGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA---NNSLISSA 152 (309)
T ss_dssp CCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSS---CCHHHHHH
T ss_pred cccc-------chhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccccccccccc---cccchhcc
Confidence 5332 22348999999999999988776 7788899999998875 3478999998743 23445556
Q ss_pred HHHHHHCCCEEEEecCCCCCCCCc--cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcC
Q 005334 233 AFTAMAQGIFVSCSAGNGGPYANS--ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAA 310 (701)
Q Consensus 233 ~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~ 310 (701)
...+.++|+++|+||||++..... .+...+++++|++..........
T Consensus 153 ~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~------------------------------- 201 (309)
T d2ixta1 153 VNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY------------------------------- 201 (309)
T ss_dssp HHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEE-------------------------------
T ss_pred ccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccc-------------------------------
Confidence 668889999999999999866543 33456777777763211110000
Q ss_pred CCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHH
Q 005334 311 NVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGD 390 (701)
Q Consensus 311 ~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~ 390 (701)
T Consensus 202 -------------------------------------------------------------------------------- 201 (309)
T d2ixta1 202 -------------------------------------------------------------------------------- 201 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCccccee
Q 005334 391 AIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSF 470 (701)
Q Consensus 391 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 470 (701)
..........++++|+.. ....||||+|||.+|+++.... .|
T Consensus 202 -----------------------~~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~~~~-------------~~ 243 (309)
T d2ixta1 202 -----------------------RVADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTWYNG-------------GY 243 (309)
T ss_dssp -----------------------EECTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEECTTS-------------SE
T ss_pred -----------------------cccccccccccccccccc--cCCCcceeecCCCceeeecCCC-------------cc
Confidence 000111334566777765 3567999999999999997764 78
Q ss_pred EeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCc
Q 005334 471 NIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDP 541 (701)
Q Consensus 471 ~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~ 541 (701)
..++|||||||+|||++|||+|++|+|++.+||++|++||++++..+.. ......++.+|+|++|+
T Consensus 244 ~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~-----g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 244 NTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY-----GAAIGDDYASGFGFARV 309 (309)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST-----TCCSSSBTTTBTCBCCC
T ss_pred eeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc-----CCccCCCcccCCCEecC
Confidence 9999999999999999999999999999999999999999988654321 12344566889999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=9.5e-42 Score=353.64 Aligned_cols=237 Identities=33% Similarity=0.414 Sum_probs=191.9
Q ss_pred CCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCc
Q 005334 85 TSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGAS 164 (701)
Q Consensus 85 ~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~ 164 (701)
...+|+||+|||||||||++||+|.++. +...+ ....+.|.+||||||||||+|+.
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~~-------~~~~~------------~~~~~~d~~gHGT~VAgiia~~~----- 81 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGRA-------QMVKT------------YYYSSRDGNGHGTHCAGTVGSRT----- 81 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTCE-------EEEEE------------SSSCSSCSSSHHHHHHHHHHCTT-----
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCCc-------eeccC------------CCCCcccccCccccccccccccc-----
Confidence 4558999999999999999999998751 11111 11235678899999999999863
Q ss_pred ccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc-------CCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334 165 LFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED-------GVNVMSMSIGGGLTDYYRDTVAIGAFTA 236 (701)
Q Consensus 165 ~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~-------gvdVInlSlG~~~~~~~~d~i~~a~~~a 236 (701)
.|+||+|+|+.+|++.... ...+++..+++++... +++|+|+|||.. ..+.+..++..+
T Consensus 82 ---------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~----~~~~~~~~~~~~ 148 (279)
T d2pwaa1 82 ---------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARL 148 (279)
T ss_dssp ---------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----CCHHHHHHHHHH
T ss_pred ---------cccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCc----cccccchhhhhh
Confidence 6999999999999987765 6778889999998874 356999999974 345566777788
Q ss_pred HHCCCEEEEecCCCCCCCCc-cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCC
Q 005334 237 MAQGIFVSCSAGNGGPYANS-ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSST 315 (701)
Q Consensus 237 ~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~ 315 (701)
.++|+++|+||||++..... .+...|++|+|||.+
T Consensus 149 ~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~-------------------------------------------- 184 (279)
T d2pwaa1 149 QSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD-------------------------------------------- 184 (279)
T ss_dssp HHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC--------------------------------------------
T ss_pred hhCCcEEEEeCccccccccccCCccCCceEEeeeEe--------------------------------------------
Confidence 99999999999999876433 455778899998732
Q ss_pred cCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHh
Q 005334 316 SSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNY 395 (701)
Q Consensus 316 ~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 395 (701)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T d2pwaa1 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecc
Q 005334 396 ISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISG 475 (701)
Q Consensus 396 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 475 (701)
..+.++.||++||.. ||+|||.+|+++++.+ .|..++|
T Consensus 185 ---------------------~~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~~-------------~~~~~sG 222 (279)
T d2pwaa1 185 ---------------------RYDRRSSFSNYGSVL--------DIFGPGTDILSTWIGG-------------STRSISG 222 (279)
T ss_dssp ---------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEEETTT-------------EEEEECS
T ss_pred ---------------------ecCCCccccCCCCcc--------ccccccccccccccCC-------------cccCCCc
Confidence 123678899999975 9999999999998765 7999999
Q ss_pred ccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCc
Q 005334 476 TSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDP 541 (701)
Q Consensus 476 TSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~ 541 (701)
||||||+|||++|||+|++|.++++++|. |++||++.+ ...+|+|++|.
T Consensus 223 TS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~----------------~~~~g~g~~n~ 271 (279)
T d2pwaa1 223 TSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD----------------LSNIPFGTVNL 271 (279)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC----------------CBSCCTTSCCE
T ss_pred chhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC----------------CCCCCCCChhh
Confidence 99999999999999999999999887775 777887542 12789999986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1.7e-40 Score=350.35 Aligned_cols=295 Identities=25% Similarity=0.277 Sum_probs=215.4
Q ss_pred CCCCC-CCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 81 TLFPT-SEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 81 ~~~~~-~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
.+|.. +++|+||+|||||||||++||+|.... .|.+...... ......++.|..||||||||||+|+.
T Consensus 12 ~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~~~~~~~~~-----~~~~~~~~~d~~gHGT~vAgiiag~~ 80 (318)
T d1wmda2 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AFRGKITALY-----ALGRTNNANDTNGHGTHVAGSVLGNG 80 (318)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TTTTCEEEEE-----ETTTTTCCCCSSSHHHHHHHHHHCCS
T ss_pred hHHHccCccccCeEEEEEcCCcCCCCcccccCc------ccCCcEEeec-----CCCCCCCCCCCCCCCccceeeccccc
Confidence 35664 899999999999999999999997642 1222111110 01122346788999999999999974
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG---CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTA 236 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a 236 (701)
.. ..||||+|+|+.+|+++..+ .....+..+++++...+++|+|+|||.............+...+
T Consensus 81 ~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~~~~~~~~~~~~~~~~ 149 (318)
T d1wmda2 81 ST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYV 149 (318)
T ss_dssp SS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTTCCCHHHHHHHHHH
T ss_pred cc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeecccccccccccchhHHHHHHHH
Confidence 22 27999999999999998765 34455788999999999999999999876555555666666677
Q ss_pred HHCCCEEEEecCCCCCCCCcccc--CCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCC
Q 005334 237 MAQGIFVSCSAGNGGPYANSISN--VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSS 314 (701)
Q Consensus 237 ~~~Gi~vV~AAGN~G~~~~~~~~--~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~ 314 (701)
.++++++|+|+||.|.....+.. ..++++++.+........
T Consensus 150 ~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------------------------------- 192 (318)
T d1wmda2 150 RKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF------------------------------------- 192 (318)
T ss_dssp HHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-------------------------------------
T ss_pred hhcceeeeeeeccccccccccccccccccccceeeccCccccc-------------------------------------
Confidence 89999999999999876554432 345556555422110000
Q ss_pred CcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHH
Q 005334 315 TSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKN 394 (701)
Q Consensus 315 ~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 394 (701)
T Consensus 193 -------------------------------------------------------------------------------- 192 (318)
T d1wmda2 193 -------------------------------------------------------------------------------- 192 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeec
Q 005334 395 YISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIIS 474 (701)
Q Consensus 395 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 474 (701)
.........+..+|++||.. ....|||+.|||.+|+++.......... .......|..++
T Consensus 193 -----------------~~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~ 252 (318)
T d1wmda2 193 -----------------GSYADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMG 252 (318)
T ss_dssp -----------------CGGGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGS-SEEEETTEEEEC
T ss_pred -----------------ccccccccccccccccCCCc--CCCcccceeecCceEEeccccccccCcc-ccCCCcceeecc
Confidence 00011223667889999987 4678999999999999987765332111 111224678899
Q ss_pred cccchhhhHhHHHHHHHhhC-----CCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 475 GTSMSCPHVSGLAALLKAAH-----PEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 475 GTSmAaP~VAG~aALl~~~~-----P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
|||||||||||++|||+|++ +.|+|.+||++|++||++... ..+...||||+||+.+||+
T Consensus 253 GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~------------~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 253 GTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL------------GYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS------------CSSCTTTTTCBCCHHHHHT
T ss_pred CcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC------------CCCCCCeeeceecHHHHhC
Confidence 99999999999999999975 468999999999999987642 2344589999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-38 Score=337.03 Aligned_cols=283 Identities=16% Similarity=0.171 Sum_probs=187.7
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV 159 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~ 159 (701)
+.+|..+.+|+||+|||||||||++||+|.++... +..|..... ...........|..+|||||||||+|..
T Consensus 27 ~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~gHGT~vAgiia~~~ 98 (334)
T d1p8ja2 27 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDP-------GASFDVNDQ-DPDPQPRYTQMNDNRHGTRCAGEVAAVA 98 (334)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCG-------GGCEETTTT-BSCCCCCCCTTCTTCHHHHHHHHHHCCS
T ss_pred HHHHhcCCCCCCeEEEEEccCCCCCChhHhhcccc-------CCCccccCC-CCccccccccccCccchhhhhhhhhhcc
Confidence 45899999999999999999999999999875221 111221111 1111222335578899999999999986
Q ss_pred cCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH-cCCeEEEEeccCCCC-CCcc--------CHH
Q 005334 160 VNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE-DGVNVMSMSIGGGLT-DYYR--------DTV 229 (701)
Q Consensus 160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~-~gvdVInlSlG~~~~-~~~~--------d~i 229 (701)
.++. ...|+||+++++.+|+... ...+.+.++.++++ ++++++|+|||.... .... ..+
T Consensus 99 ~n~~--------~~~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~ 167 (334)
T d1p8ja2 99 NNGV--------CGVGVAYNARIGGVRMLDG---EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFF 167 (334)
T ss_dssp SSSS--------SCCCTTTTSEEEEEECSSS---CCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHH
T ss_pred cccc--------ccccccccccccchhhccc---cccchHHHHHHHhhhcCCcEEeCCCCCCCcCcccCCccchhhHHHH
Confidence 4322 1379999999999998753 34456677777765 689999999997542 1111 112
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCCCcccc----CCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceee
Q 005334 230 AIGAFTAMAQGIFVSCSAGNGGPYANSISN----VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVP 305 (701)
Q Consensus 230 ~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~ 305 (701)
..+...+..+|+++|+||||++........ ..+.+++|++.+
T Consensus 168 ~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~---------------------------------- 213 (334)
T d1p8ja2 168 RGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT---------------------------------- 213 (334)
T ss_dssp HHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC----------------------------------
T ss_pred HHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccc----------------------------------
Confidence 223335567999999999998754432211 223344444321
Q ss_pred EEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEec
Q 005334 306 IVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVG 385 (701)
Q Consensus 306 l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~ 385 (701)
T Consensus 214 -------------------------------------------------------------------------------- 213 (334)
T d1p8ja2 214 -------------------------------------------------------------------------------- 213 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCc-----EEecccCCCCCCC
Q 005334 386 EKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVN-----ILAGWTGAVGPTG 460 (701)
Q Consensus 386 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~-----I~sa~~~~~~~~~ 460 (701)
..+..+.||++|+... .+..+||.. +.+...
T Consensus 214 -------------------------------~~g~~~~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~~------- 249 (334)
T d1p8ja2 214 -------------------------------QFGNVPWYSEACSSTL------ATTYSSGNQNEKQIVTTDLR------- 249 (334)
T ss_dssp -------------------------------TTSCCCTTCCBCTTCC------EEEECCCSTTSCCEEEEETT-------
T ss_pred -------------------------------cCCceeeecccCCccc------cccccccccccccccccccC-------
Confidence 1223445555555431 133334322 222211
Q ss_pred CCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccC
Q 005334 461 LESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVD 540 (701)
Q Consensus 461 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn 540 (701)
...|..++|||||||||||++|||+|++|+|++.|||++|++||++.......+.... ........||+|+||
T Consensus 250 ------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~-~~~~~~~~~G~G~ln 322 (334)
T d1p8ja2 250 ------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNG-VGRKVSHSYGYGLLD 322 (334)
T ss_dssp ------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECT-TSCEEBTTTBTCBCC
T ss_pred ------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccccccC-CCcccCCCCcceEeC
Confidence 1378899999999999999999999999999999999999999998765443332221 122233488999999
Q ss_pred ccccCC
Q 005334 541 PVAALD 546 (701)
Q Consensus 541 ~~~A~~ 546 (701)
+.+||+
T Consensus 323 a~~Av~ 328 (334)
T d1p8ja2 323 AGAMVA 328 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-38 Score=338.26 Aligned_cols=287 Identities=17% Similarity=0.145 Sum_probs=198.2
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
+..+|..+++|+||+|||||||||++||+|.++.. ...+|+... .........+..+||||||++|+|.
T Consensus 35 ~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~-------~~~~~~~~~----~~~~~~~~~~~~~HGT~vag~iaa~ 103 (339)
T d2id4a2 35 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------AEGSWDFND----NTNLPKPRLSDDYHGTRCAGEIAAK 103 (339)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------GGGCEETTT----TBSCCCCCSTTTTHHHHHHHHHHCC
T ss_pred HHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc-------ccccccccc----CCCccCCCcccccccceeeeccccc
Confidence 34589999999999999999999999999987522 122232221 1122233556789999999999987
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCCCCC-C---cc----CH-H
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTD-Y---YR----DT-V 229 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~-~---~~----d~-i 229 (701)
...+. ...|+||+|+|+.+++... .....++..++.++++. .+|+|+|+|..... . .. .. .
T Consensus 104 ~~~~~--------~~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~~~~~~~~~~~~~~a~~ 173 (339)
T d2id4a2 104 KGNNF--------CGVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDIYSCSWGPADDGRHLQGPSDLVKKALV 173 (339)
T ss_dssp SSSSS--------SCCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSEEEECEESCCSSSCCBCCCHHHHHHHH
T ss_pred ccccc--------cccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCEEeccCCCCCCcccccCccchhHHHHH
Confidence 53332 2479999999999998753 36677788888877665 58999999974311 1 11 11 2
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCCCccc--c--CCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceee
Q 005334 230 AIGAFTAMAQGIFVSCSAGNGGPYANSIS--N--VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVP 305 (701)
Q Consensus 230 ~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~--~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~ 305 (701)
..+...+..+|+++|+||||++....... . ..+.+++|+++
T Consensus 174 ~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 218 (339)
T d2id4a2 174 KGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI----------------------------------- 218 (339)
T ss_dssp HHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE-----------------------------------
T ss_pred HHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc-----------------------------------
Confidence 23333556799999999999875432211 1 12223333221
Q ss_pred EEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEec
Q 005334 306 IVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVG 385 (701)
Q Consensus 306 l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~ 385 (701)
T Consensus 219 -------------------------------------------------------------------------------- 218 (339)
T d2id4a2 219 -------------------------------------------------------------------------------- 218 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCc
Q 005334 386 EKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDK 465 (701)
Q Consensus 386 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 465 (701)
...+..+.||++|+.. ...++..+||..+.+.....
T Consensus 219 ------------------------------~~~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s~~~~~---------- 254 (339)
T d2id4a2 219 ------------------------------DHKDLHPPYSEGCSAV----MAVTYSSGSGEYIHSSDING---------- 254 (339)
T ss_dssp ------------------------------CTTSCCCTTCCCCTTE----EEEEECSBTTBCEEEECSTT----------
T ss_pred ------------------------------cccccccccccccCcc----ceeeeeeccccccceeccCC----------
Confidence 1223556667777654 23457778899888776543
Q ss_pred ccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccC
Q 005334 466 RHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAAL 545 (701)
Q Consensus 466 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~ 545 (701)
..|..++|||||||||||++|||+|++|+||+.+||.+|++||+.++...................||||+||+.+||
T Consensus 255 --~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~ln~~~Av 332 (339)
T d2id4a2 255 --RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLI 332 (339)
T ss_dssp --CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHH
T ss_pred --CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCcCCCccchhhCHHHHH
Confidence 368899999999999999999999999999999999999999998764432211111122333447999999999999
Q ss_pred CC
Q 005334 546 DP 547 (701)
Q Consensus 546 ~~ 547 (701)
+.
T Consensus 333 ~~ 334 (339)
T d2id4a2 333 EM 334 (339)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=4.3e-31 Score=281.90 Aligned_cols=161 Identities=16% Similarity=0.217 Sum_probs=107.9
Q ss_pred CCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCc
Q 005334 85 TSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGAS 164 (701)
Q Consensus 85 ~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~ 164 (701)
.+++|+||+|||||||||++||+|.+. |+.. ........+.|.++|+||+++++++......
T Consensus 19 ~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~~---------~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~- 80 (357)
T d1t1ga_ 19 EGLDGQGQCIAIIALGGGYDETSLAQY--------FASL---------GVSAPQVVSVSVDGATNQPTGDPNGPDGEVE- 80 (357)
T ss_dssp TTCCCTTCEEEEEESSCCCCHHHHHHH--------HHHT---------TCCCCCEEEEESTTCCCCCCSCTTSTHHHHH-
T ss_pred CCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhhc---------CCCCCCCceeCCCCCCCCCCCcccccccccc-
Confidence 588999999999999999999999753 1100 0001111234566788888887765432110
Q ss_pred ccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH---cCCeEEEEeccCCCCCC---ccCHHHHHHHHHHH
Q 005334 165 LFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE---DGVNVMSMSIGGGLTDY---YRDTVAIGAFTAMA 238 (701)
Q Consensus 165 ~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~---~gvdVInlSlG~~~~~~---~~d~i~~a~~~a~~ 238 (701)
.....+.||||+|+|+.+|+.. ....++.+|++++. .+++|||+|||...... +...+......+..
T Consensus 81 ---~d~~~~~GvAp~A~i~~~~~~~----~~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~ 153 (357)
T d1t1ga_ 81 ---LDIEVAGALAPGAKIAVYFAPN----TDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAA 153 (357)
T ss_dssp ---HHHHHHHHHSTTSEEEEEECCS----SHHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHHHHHHHHHHHH
T ss_pred ---CCcccceeecccCeEEEEeccc----CCCchHHHHHHHHHhhhcCCeEEecccccCcCccccchHHHHHHhhhhhcc
Confidence 0011248999999999999974 33455666666664 58999999999754221 22345556667778
Q ss_pred CCCEEEEecCCCCCCCC--------ccccCCCceEEecCC
Q 005334 239 QGIFVSCSAGNGGPYAN--------SISNVAPWITTVGAG 270 (701)
Q Consensus 239 ~Gi~vV~AAGN~G~~~~--------~~~~~ap~vitVgAs 270 (701)
+|+++|+|+||+|.... ..+...+++++|++.
T Consensus 154 ~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 193 (357)
T d1t1ga_ 154 LGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGT 193 (357)
T ss_dssp HTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEE
T ss_pred CCcEEEEEeccCCcccccccccccccccccCCcceeeeee
Confidence 99999999999985432 223356788888774
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=2.9e-28 Score=261.73 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=115.0
Q ss_pred CCCCCCCEEEEEccCCCCC-CCCccC----CCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccccc
Q 005334 86 SEVQSEVIVGVLDTGVWPE-IKSFDD----TGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVV 160 (701)
Q Consensus 86 ~~~G~gVvVgVIDtGId~~-Hp~f~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~ 160 (701)
..+|+||+|||||+|.++. |++|.. .+++.. + ........+..+||||+++++.+...
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~f~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~~~e~~ld 83 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQFTSANGLASV----------------N-TQTIQTGSSNGDYSDDQQGQGEWDLD 83 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHHHHHHTTCCCC----------------C-EEEEECSCTTSCCCBCHHHHHHHHHH
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHHHHHhcCCCCC----------------C-CCeecCCCCCCCCCCCCCcceeeccc
Confidence 4489999999999998765 566642 111100 0 00011133566899999999876531
Q ss_pred CCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc-CCeEEEEeccCCC----CCCccCHHHHHHH
Q 005334 161 NGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED-GVNVMSMSIGGGL----TDYYRDTVAIGAF 234 (701)
Q Consensus 161 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~-gvdVInlSlG~~~----~~~~~d~i~~a~~ 234 (701)
. ..+.|+||+|+|+++|++.+.+ ....+++++|++|+++ +++|||+|||... .....+.+..++.
T Consensus 84 ~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~~~a~~ 154 (369)
T d1ga6a_ 84 S---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFA 154 (369)
T ss_dssp H---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHH
T ss_pred c---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHHHHHHHHHH
Confidence 1 1247999999999999998776 6778899999999965 7999999999753 2334455667777
Q ss_pred HHHHCCCEEEEecCCCCCCCC-------------ccccCCCceEEecCCc
Q 005334 235 TAMAQGIFVSCSAGNGGPYAN-------------SISNVAPWITTVGAGT 271 (701)
Q Consensus 235 ~a~~~Gi~vV~AAGN~G~~~~-------------~~~~~ap~vitVgAst 271 (701)
+|.++|++||+||||+|.... ..+...|++++|+++.
T Consensus 155 ~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 155 TAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp HHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred HHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 888999999999999986432 2334678999999853
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=97.77 E-value=1.5e-05 Score=61.89 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=40.2
Q ss_pred cccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceecc
Q 005334 22 SAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYEL 65 (701)
Q Consensus 22 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~ 65 (701)
+.++.+.|+ .||||+++|++++++.|++.|+|.+||+|..++.
T Consensus 28 gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 28 GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 578999998 7999999999999999999999999999998764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=97.31 E-value=0.00011 Score=57.06 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=34.8
Q ss_pred cccEEEEec-ceeeEEEEEeCHHHHHHhhcCCC--eEEEEeCc
Q 005334 22 SAAMLYTYK-NVIHGFSTRLTAKEAESLQKQPG--IVSVLPEV 61 (701)
Q Consensus 22 ~~~~~~~y~-~~~ng~s~~l~~~~~~~L~~~p~--V~~V~~~~ 61 (701)
...+.+.|. +.|+||+++|+++.+++|+++|. |.+||+|.
T Consensus 29 ~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 29 GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 456777777 68999999999999999999665 99999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.36 E-value=0.029 Score=45.98 Aligned_cols=78 Identities=12% Similarity=0.045 Sum_probs=55.1
Q ss_pred eeEEEEEEEeeCCCCCe--EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeCCC-CCeEEEEEEEEcCCeEE
Q 005334 616 STVKYTRTLTNVGTPTT--YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPS-GTTSFARLQWSDGKHVV 692 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~--y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~-~~~~~G~~~~~~~~~~v 692 (701)
.+.+++.+|+|.|.... -++.+. .|+|=+++..+. .+ ++||+++++++++...... +.|.. .+..+++....
T Consensus 17 ~~~~~~vtVtN~g~~~~~~~~~~~~-~P~GW~v~~~~~--~L-~pG~s~~~~~~Vt~p~~a~~G~Y~i-~~~a~~~~~~~ 91 (103)
T d1w8oa1 17 QQVTVPVAVTNQSGIAVPKPSLQLD-ASPDWQVQGSVE--PL-MPGRQAKGQVTITVPAGTTPGRYRV-GATLRTSAGNA 91 (103)
T ss_dssp CEEEEEEEEECCSSSCBSSCEEEEE-CCTTSEEEEEEC--CB-CTTCEEEEEEEEECCTTCCCEEEEE-EEEEEETTEEE
T ss_pred CeEEEEEEEEeCCCCceeeeeEEEc-CCCCccccCcce--ee-CCCCcEEEEEEEECCCCCCCceEEE-EEEEEeCCcce
Confidence 68999999999988764 677778 999998865554 45 7999999999999875443 33333 35555554444
Q ss_pred EeeEEE
Q 005334 693 GSPIAF 698 (701)
Q Consensus 693 ~~P~~v 698 (701)
...+-+
T Consensus 92 s~t~tv 97 (103)
T d1w8oa1 92 STTFTV 97 (103)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444433
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0034 Score=57.56 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=55.5
Q ss_pred CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc------------------cc----------------
Q 005334 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE------------------LV---------------- 373 (701)
Q Consensus 328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~------------------~~---------------- 373 (701)
..+++|||+|+++|.+.+.+|..+|++.||.|+|+|.+..+... +.
T Consensus 58 ~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~ 137 (193)
T d1de4c2 58 YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS 137 (193)
T ss_dssp SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCC
T ss_pred ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCcccc
Confidence 35789999999999999999999999999999999976543110 00
Q ss_pred ccccccceEEechhhHHHHHHhHh
Q 005334 374 ADAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 374 ~~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
...-.||+.-|+..+++.|+..++
T Consensus 138 ~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 138 SGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TTSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCCcCCeeeCCHHHHHHHHHHcC
Confidence 012347999999999999998874
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.012 Score=55.52 Aligned_cols=38 Identities=32% Similarity=0.367 Sum_probs=35.6
Q ss_pred CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeec
Q 005334 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNT 365 (701)
Q Consensus 328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 365 (701)
.-+++|||+|+++|.+.+.+|..+|++.||.|+|++++
T Consensus 76 gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysD 113 (233)
T d3bi1a2 76 KINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSD 113 (233)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred CCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecC
Confidence 35899999999999999999999999999999999986
|