Citrus Sinensis ID: 005339

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-
Protein Sequence
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccHHHcccccccccccccccHHHHcHHHHHHHHccccccccHHHHHHHccccHccccHHHHHHcccccccccccccccHHHHHcccccccccHHccEEccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MASWLKAAEDLFEVVDRRAKLVVNELAdeqsdfqtpasngqgsqAKKIKSRIKAQRRHSADESLKINDTAREQantqaspvdvtpnkdtATLAVEKEtittgktqkngeqqqtnerdapsiplteqskdmskhdadrveipetftdldtatpngeilnendsdvhlnhppsplppkemgivnedriddagqitksadadaplkidskiqavdppvnsesslkdaDVKVETLSNKRKQqalkaddpptkeqdQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKrgqkkspeEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERsrvsrrswssweedaemksleplplhhrhIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAEsmglttsnlp
Flexible Loop (DISEMBL)
MASWLKAAEDLFEVVDRRAKLVVNELadeqsdfqtpasngqgsqakKIKSRIKAqrrhsadeslkindtareqantqaspvdvtpnkdTATLAVEketittgktqkngeqqqtnerdapsiplteqskdmskhdaDRVEIPetftdldtatpNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKsadadaplkidskiqavdppvnsesslkdaDVKVETLSNKrkqqalkaddpptkeqDQLDEAQGLLKTtistgqskeaRLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEEraahnatkmaAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKrdaehysreeHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLqevqseaersrvsrrswssweeDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAEsmglttsnlp
Low Complexity Region (SEG)
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQalreelasverraeeeraaHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQevqseaersrvsrrswssweedaeMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIIllfylvfvhlflmyllhRLQEQADNFAAREVAESMGLTTSNLP
Disordered region (IsUnstruct)
****LKAAEDLFEVVDRRAKLVVN************************************************************************************************************************************************************************************************************************************************************VCA********************************************************************************************************************************************************************************AMLEVECA**************************************************************************************YRELTDLLYYKQT**********************************************************HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQA********************
Disordered Region (DISOPRED)
**SWLKA*ED**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRL*****************L******
Disordered Region (DISEMBL)
MASWLKAAEDLFEVVDRRAKLVVNELADEQS*******************************SLKINDTAR************TPNKDTATLAVEKETITTG***************APSIPLT**********ADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAV***********DADVKVETLSN********************DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA*****************QMQAW*****************LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR*************************EMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAES*********
Disordered Region (DISPRO)
***WLKAAEDLFEVVDRRAKLVVNELA*********************************************************************************************************************************************************VN**RIDDAGQITKS**A***LKIDSKIQAV****NSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVS***************LEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREV*ES*GLT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMxxxxxxxxxxxxxxxxxxxxxHNATKMAAMEREVELEHRAAEASMALARIQRIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSPEEANQAIQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEHMELEKRYRELTDLLYYKQTQLETMASExxxxxxxxxxxxxxxxxxxxxxxxxxxxRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	701	2.2.26 [Sep-21-2011]
Q8S8N9	707	Golgin candidate 1 OS=Ara	yes	no	0.955	0.947	0.614	0.0
Q5JLY8	709	Golgin-84 OS=Oryza sativa	yes	no	0.957	0.946	0.568	0.0
Q6GNT7	722	Golgin subfamily A member	N/A	no	0.569	0.552	0.284	3e-18
Q9QYE6	729	Golgin subfamily A member	yes	no	0.497	0.478	0.265	6e-15
Q8TBA6	731	Golgin subfamily A member	yes	no	0.497	0.477	0.265	2e-14
Q3ZU82	728	Golgin subfamily A member	yes	no	0.278	0.267	0.295	4e-14
Q7SXE4	760	Golgin subfamily A member	yes	no	0.213	0.197	0.301	1e-12
B0F9L7	668	Golgin candidate 2 OS=Ara	no	no	0.360	0.378	0.274	2e-12
Q8SZ63	516	Golgin-84 OS=Drosophila m	yes	no	0.178	0.242	0.291	3e-08

>sp|Q8S8N9|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/718 (61%), Positives = 534/718 (74%), Gaps = 48/718 (6%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+   +++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSK---KKKLVK 57

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 58  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 114

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 115 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 165

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 166 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 223

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 224 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 283

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 284 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 343

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 344 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 403

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 404 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 463

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+QAWQDEV+RARQGQRDAE 
Sbjct: 464 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 523

Query: 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 524 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 583

Query: 573 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQ 632
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LEPLPL+HRH+A AS QLQ
Sbjct: 584 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMATASTQLQ 643

Query: 633 KAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVA 690
            A KLLDSGAVRATRFLWRYPIAR+ LLFYLVFVHLFLMYL+HRLQEQA+   A+EVA
Sbjct: 644 NAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQEVA 698

Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/739 (56%), Positives = 505/739 (68%), Gaps = 68/739 (9%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIK----------- 49
           MASWLK AEDL EVVDRRAK+V  EL+DEQS  Q   S+ Q  QAKK K           
Sbjct: 1   MASWLKVAEDLLEVVDRRAKIVATELSDEQSSPQPSGSSSQEGQAKKGKLREKGPLKLAT 60

Query: 50  ----SRIKAQR----RHSADESLKINDT-----------AREQANTQASPVDVTPNKDTA 90
               SR  AQ+    R    E +KI                  +    S  DV    D  
Sbjct: 61  GDAGSRTAAQKERKSRQPPRERIKIEKIRPSPPVDSSSVDASASKPDVSSSDVKGLDDDG 120

Query: 91  TLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTA 150
               E++ +   K     E   T         +  QS + S  DA  V        +D A
Sbjct: 121 GAEKEEKVVVDRKNDIGAEVVDTE--------VEVQSTERSAEDAAIV--------VDGA 164

Query: 151 TPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSAD---ADAPLKIDSK 207
             +G      +S      P  P    E  I N+D      +I  + +    D+ +++  +
Sbjct: 165 ADSGNSEGAAESSA----PSVPDERCEPSISNQD-----AEIVSAVNLEEKDSAMEVIHE 215

Query: 208 IQAVDPPVNSESSLKDADVKVETLSNK----RKQQALKADDPPTKEQDQLDEAQGLLKTT 263
               + P +++ S K  D K E LS+       QQ  K D    K+QDQL+EA+GLLK  
Sbjct: 216 KNIKEVP-DTQVSGKSQDSKREGLSDSPESTENQQEHKLDSGSVKDQDQLEEARGLLKNV 274

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323
           + TGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV ERE   SYEA +KQL+QELS+ 
Sbjct: 275 VKTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVQEREKCSSYEAHMKQLQQELSMS 334

Query: 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383
           + E ++ ESN+ +AL AKN+EIE+LV S+D+ KK+AA SE  LA+LQ +M+ + RNRELT
Sbjct: 335 RVEGSRAESNMVDALTAKNAEIESLVKSLDSWKKKAAASEEKLAALQEDMDGLKRNRELT 394

Query: 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE 443
           ETR+IQALREELA+VERRAEEER AHNATKMAA+EREVELEHRA EAS ALARIQR AD+
Sbjct: 395 ETRVIQALREELATVERRAEEERIAHNATKMAAVEREVELEHRAVEASNALARIQRAADQ 454

Query: 444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERA 503
            +++A ELE KVA+LEVECA+LQQELQ+MEAR +R QKK  EEANQ IQMQAWQ+EVERA
Sbjct: 455 SSSRAMELEHKVAVLEVECASLQQELQEMEARNRRAQKKPSEEANQVIQMQAWQEEVERA 514

Query: 504 RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQ 563
           RQ QR+AE K+SSLEAE+QKMRVEMA MKRDAEHYSR+EH+ELEKRYRELTDLLY+KQTQ
Sbjct: 515 RQSQREAETKISSLEAELQKMRVEMAGMKRDAEHYSRQEHVELEKRYRELTDLLYHKQTQ 574

Query: 564 LETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRH 623
           LE+MASEKAA EFQLEK + +  EVQ EAERSRV+RRS S+WEEDA++K+LEPLPLHHRH
Sbjct: 575 LESMASEKAALEFQLEKSIKQFHEVQMEAERSRVARRSASAWEEDADIKALEPLPLHHRH 634

Query: 624 IAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADN 683
           +A A+ QLQKAAKLLDSGAVRATRFLWR+P+AR+ LLFYLVFVHLFLMYL+HRLQ    +
Sbjct: 635 MATANQQLQKAAKLLDSGAVRATRFLWRHPVARVSLLFYLVFVHLFLMYLMHRLQ----D 690

Query: 684 FAAREVAESM-GLTTSNLP 701
           FA+RE   +M GL  S+LP
Sbjct: 691 FASREGPTAMGGLANSDLP 709

May be involved in maintaining Golgi structure and in intra-Golgi transport.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6GNT7|GOGA5_XENLA Golgin subfamily A member 5 OS=Xenopus laevis GN=golga5 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 208/432 (48%), Gaps = 33/432 (7%)

Query: 253 LDEAQGLLKTTISTGQSKEARLARVCA----GLSSRLQEYKSENAQLEELLVAERELSRS 308
           L EA  LLK+   T +S +   +R+      G S   Q  ++   +L E   AE  L R 
Sbjct: 299 LQEADQLLKSRTETLESLQIEKSRILQDQSEGSSIHNQALQTMQERLRE---AESTLIRE 355

Query: 309 YEARIKQLEQELSVYKSEVTKVESNLAEA-LAAKNSEIETLVSSIDALKKQAALSEGNLA 367
            E+  KQ++ E +   S++     NLAEA + A+   +E    S D L++Q   S+  L 
Sbjct: 356 QES-YKQIQNEFATRLSKIEAERQNLAEAVILAEKKHMEEKRKS-DDLQQQLKTSKVGLD 413

Query: 368 SLQMNMESIMRNRELTETRMIQALREELASV-ERRAEEERAAHNATKMAAMEREVELEHR 426
           SL+  M    +      TR++Q+  + + S+ E    E   +H+A+ M       ELE  
Sbjct: 414 SLKQEMADYKQK----ATRILQSKEKLINSLKEGSGIEGLDSHSASTM-------ELEEM 462

Query: 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEV-ECATLQQELQDMEARLKRGQKKSPE 485
             E  M    IQ++  +      EL Q V   +V E  + +++LQD+  +    Q+   E
Sbjct: 463 RHERDMQREEIQKLMGQIQQLKAEL-QDVETQQVSEAESAREQLQDVHEQFATQQRAKQE 521

Query: 486 -EANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHM 544
            EA    Q Q +Q   E   + +   + ++   E E+QK+R ++       +  S     
Sbjct: 522 LEAELERQKQEFQYIQEDLYKTKNTLQGRIRDREDEIQKLRNQLTN-----KALSSSSQT 576

Query: 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSS 604
           ELE R  +LT+ L  KQT LE +++EK +  +QLE+  ++L+ VQ  +        S   
Sbjct: 577 ELENRLHQLTETLIQKQTMLENLSTEKNSLVYQLERLEHQLKNVQGSSLNGTSINMSVIE 636

Query: 605 WEEDAEMKSLEPLPLHHR--HIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFY 662
             E A M+++ P+       ++AG   +++KAA  +D  ++R   FL RYPIAR+ ++ Y
Sbjct: 637 SNEGARMRNV-PVLFSDSDPNVAGMYGRVRKAATSIDQFSIRLGIFLRRYPIARVFIIIY 695

Query: 663 LVFVHLFLMYLL 674
           +  +HL++M +L
Sbjct: 696 MALLHLWVMIVL 707

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Xenopus laevis (taxid: 8355)

>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2

 Score = 83.6 bits (205), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 184/395 (46%), Gaps = 46/395 (11%)

Query: 296 EELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355
           E L  A+  L R  E+  KQ++ E +   +++     NLAEA+     +       +D L
Sbjct: 350 ERLHEADATLKREQES-YKQMQSEFAARLNKMEVDRQNLAEAVTLAERKYSEEKKKVDEL 408

Query: 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415
           ++Q  L   +L S +  +    +      TR++Q+ +E+L +  +         ++T  +
Sbjct: 409 QQQVKLHRASLESAKQELVDYKQK----ATRILQS-KEKLINSLKEGSSFEGLESST-AS 462

Query: 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475
           +ME E EL H   E  M    IQ++  +      EL+   A    E  + +++LQD++ +
Sbjct: 463 SMELE-ELRH---EKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEAESAREQLQDLQDQ 518

Query: 476 LKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAE-----------NKLSSLEAEVQKM 524
           +          A Q    Q  + E+ER +Q  R  E           +++   E E+QK+
Sbjct: 519 I----------AKQRTSKQELETELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKL 568

Query: 525 RVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584
           R ++       +  S     ELE R  +LT+ L  KQT LE++++EK +  FQLE    R
Sbjct: 569 RNQLTN-----KTLSNSSQSELESRLHQLTETLIQKQTMLESLSTEKNSLVFQLE----R 619

Query: 585 L-QEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHR----HIAGASVQLQKAAKLLD 639
           L Q+V S +           S  +  E   L  +P+       ++AG   +++KAA  +D
Sbjct: 620 LEQQVHSASSGPNSGSAINMSGVDSGEGTRLRNVPVLFNDTETNLAGMYGKVRKAASSID 679

Query: 640 SGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 674
             ++R   FL RYPIAR+ ++ Y+  +HL++M +L
Sbjct: 680 QFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVL 714

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Mus musculus (taxid: 10090)

>sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 190/395 (48%), Gaps = 46/395 (11%)

Query: 296 EELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355
           E L  A+  L R  E+  KQ++ E +   ++V     NLAEA+     +       +D L
Sbjct: 352 ERLHEADATLKREQES-YKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDEL 410

Query: 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415
           ++Q  L + NL S +  +    +      TR++Q+  + + S++  +  E    +++  +
Sbjct: 411 QQQVKLYKLNLESSKQELIDYKQK----ATRILQSKEKLINSLKEGSGFE--GLDSSTAS 464

Query: 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475
           +ME E EL H   E  M    IQ++  +      EL+   A    E  + +++LQD+  +
Sbjct: 465 SMELE-ELRH---EKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQ 520

Query: 476 LKRGQKKSPEEANQAIQMQAWQDEVERARQ-----------GQRDAENKLSSLEAEVQKM 524
           +  GQK S +E          + E+ER +Q            +   ++++   + E+QK+
Sbjct: 521 IA-GQKASKQE---------LETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKL 570

Query: 525 RVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584
           R ++       +  S     ELE R  +LT+ L  KQT LE++++EK +  FQLE    R
Sbjct: 571 RNQLTN-----KTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLE----R 621

Query: 585 L-QEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHR----HIAGASVQLQKAAKLLD 639
           L Q++ S +  S        S  ++ E   L  +P+       ++AG   +++KAA  +D
Sbjct: 622 LEQQMNSASGSSSNGSSINMSGIDNGEGTRLRNVPVLFNDTETNLAGMYGKVRKAASSID 681

Query: 640 SGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 674
             ++R   FL RYPIAR+ ++ Y+  +HL++M +L
Sbjct: 682 QFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVL 716

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Homo sapiens (taxid: 9606)

>sp|Q3ZU82|GOGA5_RAT Golgin subfamily A member 5 OS=Rattus norvegicus GN=Golga5 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 45/240 (18%)

Query: 465 LQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSL------- 517
           L+ ELQDMEA+    Q    E A +  Q+Q  QD++ + R  +++ E +L  +       
Sbjct: 489 LRSELQDMEAQ----QVSEAESARE--QLQDLQDQIAKQRASKQELETELDRMKQEFHYV 542

Query: 518 ------------------EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYY 559
                             E E+QK+R ++       +  S     ELE R  +LT+ L  
Sbjct: 543 EEDLHRTKNTLQSRIKDREEEIQKLRNQLTN-----KTLSNSSQSELESRLHQLTETLIQ 597

Query: 560 KQTQLETMASEKAAAEFQLEKEMNRL-QEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLP 618
           KQT LE++++EK +  FQLE    RL Q++ S A           S  +  E   L  +P
Sbjct: 598 KQTLLESLSTEKNSLVFQLE----RLEQQLHSAATGPSSGSSINMSGVDSGEGTRLRNVP 653

Query: 619 LHHR----HIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 674
           +       ++AG   +++KAA  +D  ++R   FL RYPIAR+ ++ Y+  +HL++M +L
Sbjct: 654 VLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVL 713

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Rattus norvegicus (taxid: 10116)

>sp|Q7SXE4|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio GN=golga5 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 9/159 (5%)

Query: 518 EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577
           E E+QK+R ++       +  S     ELE R  +LT+ L  KQT LE + +EK +  FQ
Sbjct: 594 EDEIQKLRNQLTN-----KALSNSSQAELEGRLHQLTETLIQKQTMLEALGTEKNSLVFQ 648

Query: 578 LEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASV--QLQKAA 635
           LE+   +L+ +Q    ++  S  + ++ E     +   P+        G  V  +++KAA
Sbjct: 649 LERLEQQLKSLQ--GGQNSASHINMAAMEGPGARQRNTPILFSDGDGPGTGVYGKVRKAA 706

Query: 636 KLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 674
             +D  ++R   FL RYP+AR+ ++ Y+  +HL++M +L
Sbjct: 707 STIDRFSIRLGIFLRRYPMARVFVIIYMALLHLWVMIVL 745

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Danio rerio (taxid: 7955)

>sp|B0F9L7|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 132/281 (46%), Gaps = 28/281 (9%)

Query: 402 AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVE 461
           A+ E+  HN T+M  + R   LE   AE + +LA  Q+  + +  +   L+Q+V + E  
Sbjct: 379 ADLEKQKHNNTRMEVLTRLAGLEAENAELTRSLAAGQKKLETQIDQVAVLKQQVELKEST 438

Query: 462 CATLQQELQDMEAR---LK-----RGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENK 513
              L++   ++  R   LK     RG K   +     I +    D++ R        ++K
Sbjct: 439 LEELKRNTFNIGGRGTTLKQLDTSRGDKFEHQMLEAEISLLT--DKIGRL-------QDK 489

Query: 514 LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 573
            + LEA+++ MR E+            E  +EL++R  +LTD L  KQ+Q+E ++SEKA 
Sbjct: 490 ATKLEADIEMMRKEL--------EEPTEVEIELKRRLNQLTDHLIQKQSQVEALSSEKAT 541

Query: 574 AEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQK 633
             F++E  ++RL E       +  S +   +   D E+   +  P     I      L  
Sbjct: 542 ILFRIEA-VSRLIEENKGMSATEASSQDLEA--GDWELSGSKFKPAFQDKIRSGKKHLGW 598

Query: 634 AAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 674
               L++  +  T FL R P A+I  + YLV +HL+++Y+L
Sbjct: 599 LVMQLNAIFISGTVFLRRNPTAKIWAVVYLVCLHLWVLYIL 639

Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8SZ63|GOGA5_DROME Golgin-84 OS=Drosophila melanogaster GN=Golgin84 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 12/137 (8%)

Query: 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE----VQSEAERSRVSRR 600
           + E R + LT  L  +Q+ LE + SE+ A   Q EK   +LQ+    V+ E++R   SR 
Sbjct: 379 DYETRLKALTQSLVERQSLLERVTSERNALRLQHEKAQTQLQQNMHLVEMESQRGS-SRH 437

Query: 601 SWSSWEEDAEMKS---LEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 657
           +  +  +D + +    + P P  +R     + + ++A +  DS  +R   FL RYP+ R+
Sbjct: 438 TMLNSTDDVKAQFPLLMHPSPFDNR----VARRFKRALRQADSMGIRVGTFLRRYPMMRV 493

Query: 658 ILLFYLVFVHLFLMYLL 674
            ++ Y+  +HL++M++L
Sbjct: 494 SVIVYVALLHLWVMFVL 510

May be involved in maintaining Golgi structure and in intra-Golgi transport.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
255546349	717	Golgin-84, putative [Ricinus communis] g	0.998	0.976	0.718	0.0
297738766	712	unnamed protein product [Vitis vinifera]	0.998	0.983	0.705	0.0
356560629	702	PREDICTED: golgin candidate 1-like [Glyc	0.982	0.981	0.677	0.0
356497595	703	PREDICTED: golgin candidate 1-like [Glyc	0.987	0.984	0.683	0.0
225445112	694	PREDICTED: golgin candidate 1-like [Viti	0.975	0.985	0.691	0.0
449466268	709	PREDICTED: golgin candidate 1-like [Cucu	0.992	0.981	0.652	0.0
334184316	710	golgin candidate 1 [Arabidopsis thaliana	0.960	0.947	0.616	0.0
164708702	710	putative golgin-84-like protein [Arabido	0.960	0.947	0.615	0.0
79557632	707	golgin candidate 1 [Arabidopsis thaliana	0.955	0.947	0.614	0.0
297832160	746	hypothetical protein ARALYDRAFT_899882 [	0.951	0.894	0.593	0.0

>gi|255546349|ref|XP_002514234.1| Golgin-84, putative [Ricinus communis] gi|223546690|gb|EEF48188.1| Golgin-84, putative [Ricinus communis]

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/718 (71%), Positives = 582/718 (81%), Gaps = 18/718 (2%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAKLVV+ELADE SD Q+PASNGQGSQ K  + + KAQ+R S 
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELADEHSDSQSPASNGQGSQPKTARGKKKAQKRLSK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKT--QKNGEQQQTNERDA 118
            ES K +    E   TQ S +++  ++D A L+VE +T  T K+  Q   EQQQ  ++DA
Sbjct: 61  IESDKASSAKAEFITTQTSQLEME-SEDRAALSVEHDTAPTSKSILQVVAEQQQDTDKDA 119

Query: 119 PSIPLTEQ-SKDMSKHDADRVEIP--ETFTDLDTATPNGEILNENDSDVHLNHPPSPLPP 175
            SI   E+ + ++ KHD D VE+P      D  T+T NGEILNE   D  L HPPSPLP 
Sbjct: 120 SSIKSPERLANEVVKHDTDNVEVPVAAADADAKTSTSNGEILNEKAPDGFLEHPPSPLPA 179

Query: 176 KEMGIVNEDRID---DAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKVE 229
           KE+ ++NED  D   DAG   K +DA+ PL+ D   S+   +D P+N E  LKDAD+K  
Sbjct: 180 KEIEVLNEDHQDHPIDAGVNIKLSDAEVPLETDQERSQSANIDTPINDEIVLKDADLKAN 239

Query: 230 TLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYK 289
            + N++     KAD+ P K QDQL+EAQGLLKT ISTGQSKEARLARVCAGLS+RLQEYK
Sbjct: 240 PVVNQQDHHQQKADNSPKKIQDQLEEAQGLLKTAISTGQSKEARLARVCAGLSTRLQEYK 299

Query: 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349
           SENAQLEELL+AERELS+S E RIKQL+Q+LS  KSEVT+VESN+ EALAAKNSEIE LV
Sbjct: 300 SENAQLEELLIAERELSKSLETRIKQLQQDLSRSKSEVTRVESNMGEALAAKNSEIEALV 359

Query: 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409
           +SID LKKQAALSEGNLASLQ NMESIMRNRELTETRM+QALREEL+S ERRAEEERAAH
Sbjct: 360 NSIDVLKKQAALSEGNLASLQANMESIMRNRELTETRMMQALREELSSAERRAEEERAAH 419

Query: 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469
           NATKMAAMEREVELEHRA EAS ALARIQRIADERTAKA ELEQKVA+LEVECA+L QEL
Sbjct: 420 NATKMAAMEREVELEHRAVEASTALARIQRIADERTAKAAELEQKVALLEVECASLNQEL 479

Query: 470 QDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529
           QDME R++RGQKKSPEEANQ IQMQAWQ+EVERARQGQRDAENKLSS EAE+QKMRVEMA
Sbjct: 480 QDMETRVRRGQKKSPEEANQVIQMQAWQEEVERARQGQRDAENKLSSTEAELQKMRVEMA 539

Query: 530 AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV- 588
           AMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLE MASEKAAAEFQLEKE+ R+++  
Sbjct: 540 AMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLEAMASEKAAAEFQLEKEVKRIKKXX 599

Query: 589 ----QSEAE-RSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAV 643
               Q EAE      R S SSWEED+EMK+LEPLPLHHRH+A AS+QLQKAAKLLDSGA 
Sbjct: 600 IDVKQIEAERSRVSRRASSSSWEEDSEMKALEPLPLHHRHMAVASMQLQKAAKLLDSGAA 659

Query: 644 RATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 701
           RATRFLWRYP AR+ILLFYLVFVHLFLMYLLHRLQEQAD+ +AREVA+SMGL T  LP
Sbjct: 660 RATRFLWRYPTARLILLFYLVFVHLFLMYLLHRLQEQADDLSAREVAQSMGLATPTLP 717

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738766|emb|CBI28011.3| unnamed protein product [Vitis vinifera]

 Score =  894 bits (2311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/713 (70%), Positives = 574/713 (80%), Gaps = 13/713 (1%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIK--AQRRH 58
           MASWLKAAEDLFEVVDRRAKLVV+EL+DEQ D Q P SNGQGSQ KK K + K  AQ+R 
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELSDEQHDGQAPDSNGQGSQTKKTKPKSKSKAQKRL 60

Query: 59  SADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKT--QKNGEQQQTNER 116
           S +E  KINDTA+ Q  TQ +  D+ P+KD AT + E +  T+  +  Q N EQ Q   +
Sbjct: 61  STNEPSKINDTAQVQTGTQPAVSDIAPDKDRATRSFENDETTSSNSTAQANNEQLQNGNK 120

Query: 117 DAP--SIPLTEQ-SKDMSKHDADRVEIPETFTDLDT--ATPNGEILNENDSDVHLNHPPS 171
           DA    IP  E    DM K +AD  E+  T TD++   +T NGE++N+  +D +   P S
Sbjct: 121 DASVFGIPSLETLPNDMVKPEADLPEVAPTVTDVEAIASTSNGELVNDK-ADANEGQPTS 179

Query: 172 PLPPKEMGIVNEDRIDDAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKV 228
             P   + IV+ED   +AGQ  KS DAD P +ID   S+   VD P +S++   D+++KV
Sbjct: 180 FSPTAGVEIVSEDHPVEAGQNIKSRDADVPSQIDQEGSQSVNVDAPSSSDTQSNDSEIKV 239

Query: 229 ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEY 288
           ET+SN++KQQ  K D  P K QDQLDEAQGLLKT +STGQSKEARL RVCAGL +RLQE 
Sbjct: 240 ETISNQKKQQEHKGDASPMKLQDQLDEAQGLLKTAVSTGQSKEARLTRVCAGLLTRLQEC 299

Query: 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL 348
           KSENAQLEELL AE+ELS SYEARIKQL+Q+LS  K EV+KVES + EALAAKNSEIE L
Sbjct: 300 KSENAQLEELLTAEKELSNSYEARIKQLQQDLSASKIEVSKVESIMVEALAAKNSEIEAL 359

Query: 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408
           V+S+DALKKQAA SEGNLAS+Q NMESIMRNRELTETRM+QALREELAS ERRAEEERAA
Sbjct: 360 VNSMDALKKQAAFSEGNLASMQANMESIMRNRELTETRMMQALREELASAERRAEEERAA 419

Query: 409 HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQE 468
           H+ATKMAAMEREVELEH+A EAS ALARIQR+ADERTAKA E EQKVA+LEVECATL QE
Sbjct: 420 HHATKMAAMEREVELEHQAVEASTALARIQRVADERTAKAAEFEQKVALLEVECATLNQE 479

Query: 469 LQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 528
           L DMEAR +RGQKKSPEEANQ IQMQAWQ+EVERARQGQRDAE KLSS+EAE+QKMRVEM
Sbjct: 480 LHDMEARARRGQKKSPEEANQVIQMQAWQEEVERARQGQRDAEAKLSSMEAELQKMRVEM 539

Query: 529 AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588
           AAMKRDAEHYSR+EHMELEKRYRELTDLLY KQTQLE MASEKAAA FQLEKE+ RL+E 
Sbjct: 540 AAMKRDAEHYSRQEHMELEKRYRELTDLLYNKQTQLEAMASEKAAAGFQLEKEVKRLKEA 599

Query: 589 QSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRF 648
           Q EAERSR SRR  +SWE+D ++K+LEPLPLHHRH+A AS+QLQKAAKLLDSGAVRATRF
Sbjct: 600 QVEAERSRTSRRGSASWEDDTDIKALEPLPLHHRHMAAASIQLQKAAKLLDSGAVRATRF 659

Query: 649 LWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 701
           LWRYP AR++LLFYLVFVHLFLMYLLH LQEQAD  A+REVA+SMGL T  LP
Sbjct: 660 LWRYPTARLLLLFYLVFVHLFLMYLLHHLQEQADELASREVAQSMGLATPTLP 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560629|ref|XP_003548593.1| PREDICTED: golgin candidate 1-like [Glycine max]

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/714 (67%), Positives = 566/714 (79%), Gaps = 25/714 (3%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           M SWLKAAE LFEVVDRRAK V ++L++EQ D ++PASNGQGSQ K+ KS+ KAQ+  S 
Sbjct: 1   MDSWLKAAEGLFEVVDRRAKAVASDLSEEQGDSKSPASNGQGSQGKRTKSKPKAQKALS- 59

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPS 120
           D    I+DT  E++ + ++PVD+  + D     V+ E   +  T  N + ++    DA S
Sbjct: 60  DSPTIISDTTHEKSGSPSAPVDIATSIDK----VDPEIDVSASTSTN-QPKEPQPSDATS 114

Query: 121 IPLTEQS------KDMSKHDADRVEIPETFTDLDTAT--PNGEILNENDSDV-HLNHPPS 171
            PL   S       D+ KHD D  E      D+  AT   NG+ + E+ SD+  ++ PP+
Sbjct: 115 -PLLGSSLSKILGDDVGKHDTDDAEALVNDADIGVATIAGNGDPVQESASDICEMDPPPA 173

Query: 172 PLPPKEMGI-VNEDRIDDAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVK 227
           P      GI  + D     GQI KS D DA   +D   S   A D   N++  LKD+DVK
Sbjct: 174 P-----KGIEGSSDEPTSTGQIIKSRDLDASKNVDIEKSDSVASDTAPNNDPILKDSDVK 228

Query: 228 VETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQE 287
           VE++ +++ Q+  KAD  P K QDQLDEAQGLLKTT STGQSKEARLARVCAGLSSRLQE
Sbjct: 229 VESVVDEKSQEDHKADISPEKVQDQLDEAQGLLKTTKSTGQSKEARLARVCAGLSSRLQE 288

Query: 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET 347
           YKSENAQLEELL +ERELS+SYEA IKQL+++LS  K EVT+VESN+ EALAAKN+EIE 
Sbjct: 289 YKSENAQLEELLTSERELSKSYEASIKQLQKDLSESKREVTRVESNMVEALAAKNAEIEA 348

Query: 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERA 407
           L+SS+DA+K+QAALSEGNLASLQ +MES+MRNREL+ETRM+QALREELAS ERRAEEER 
Sbjct: 349 LLSSMDAVKRQAALSEGNLASLQASMESMMRNRELSETRMMQALREELASAERRAEEERV 408

Query: 408 AHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467
           AHNATKMAAMEREVELEHRA E+S ALARIQR+ADERTAKA ELEQKVA+LEVECA+L Q
Sbjct: 409 AHNATKMAAMEREVELEHRAVESSTALARIQRVADERTAKATELEQKVALLEVECASLNQ 468

Query: 468 ELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527
           ELQDMEAR++R QKK+PEEANQ IQ QAWQ+E+ERARQGQR+AENKLSSLEAE+QKMRVE
Sbjct: 469 ELQDMEARVRREQKKAPEEANQVIQKQAWQEELERARQGQREAENKLSSLEAEMQKMRVE 528

Query: 528 MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587
           MAAMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLETM SEKAA EFQLEKE+ RLQE
Sbjct: 529 MAAMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLETMVSEKAATEFQLEKEIKRLQE 588

Query: 588 VQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATR 647
            ++EAERSRVSRR+ SSWE++ E+KSLEPLP+HHRH+ GAS+QLQKA KLLDSGAVRATR
Sbjct: 589 AKAEAERSRVSRRASSSWEDETEIKSLEPLPMHHRHLVGASIQLQKAVKLLDSGAVRATR 648

Query: 648 FLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 701
           FLWRYP AR+IL FYLVFVHLFLMYLLHRLQ QAD  AAREVAESMGL+  NLP
Sbjct: 649 FLWRYPTARVILFFYLVFVHLFLMYLLHRLQAQADTLAAREVAESMGLSNQNLP 702

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497595|ref|XP_003517645.1| PREDICTED: golgin candidate 1-like [Glycine max]

 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/712 (68%), Positives = 569/712 (79%), Gaps = 20/712 (2%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           M SWLKAAE LFEVVDRRAK V ++L++EQ D ++PASNGQGSQ KK KS+ KAQ+  S 
Sbjct: 1   MDSWLKAAEGLFEVVDRRAKAVASDLSEEQGDLKSPASNGQGSQGKKTKSKPKAQKGLS- 59

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPS 120
           D S  I+DT +E++ + ++P D+  + D     V+ E I    +    + ++    DA S
Sbjct: 60  DSSTTISDTTQEKSGSPSAPADIATSIDK----VDPEIIDGSASTSTNQPKEPRPSDATS 115

Query: 121 IPLTEQS------KDMSKHDADRVEIPETFTDLDTAT--PNGEILNENDSDVHLNHPPSP 172
            PL   S       D+ KHD D VE      D+  AT   NG+ + E+ SDV    PP P
Sbjct: 116 -PLLGSSLSKMLGDDVGKHDPDDVETLVNDADIGVATIAANGDTVQESASDVCEMDPP-P 173

Query: 173 LPPKEMGIVNEDRIDDAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKVE 229
            P +  G  +E      GQI KS D DA   +D   S+  A D   N+++ LKD+DVK+E
Sbjct: 174 APKEIEGPSDEPT--STGQIIKSRDLDASKNVDIEKSESVASDTAPNNDTILKDSDVKLE 231

Query: 230 TLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYK 289
           ++ +++ Q+  K D  P K QDQLDEAQGLLKTT STGQSKEARLARVCAGLSSRLQEYK
Sbjct: 232 SVVDEKSQEDHKTDISPKKVQDQLDEAQGLLKTTKSTGQSKEARLARVCAGLSSRLQEYK 291

Query: 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349
           SENAQLEELL +ERELS+SYEA IKQL+++LS  K EVT+VESN+ EALAAKN+EIE L+
Sbjct: 292 SENAQLEELLTSERELSKSYEASIKQLQKDLSESKREVTRVESNMVEALAAKNAEIEALL 351

Query: 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409
           SS+DA+K+QAALSEGNLASLQ +MES+MRNREL+ETRM+QALREELAS ERRAEEERAAH
Sbjct: 352 SSMDAVKRQAALSEGNLASLQASMESMMRNRELSETRMMQALREELASAERRAEEERAAH 411

Query: 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469
           NATKMAAMEREVELEHRA E+S ALARIQR+ADERTAKA ELEQKVA+LEVECA+L QEL
Sbjct: 412 NATKMAAMEREVELEHRAVESSTALARIQRVADERTAKATELEQKVALLEVECASLNQEL 471

Query: 470 QDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529
           QDMEAR++R QKK+PEEANQ IQMQAWQ+E+ERARQGQR+AENKLSSLEAE+QKMRVEMA
Sbjct: 472 QDMEARVRREQKKAPEEANQVIQMQAWQEELERARQGQREAENKLSSLEAEMQKMRVEMA 531

Query: 530 AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589
           AMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLETM SEKAAAEFQLEKE+ RLQE +
Sbjct: 532 AMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLETMVSEKAAAEFQLEKEIKRLQEAK 591

Query: 590 SEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFL 649
           +EAERSRVSRR+ SSWE++ E+KSLEPLPLHHRH+ GAS+QLQKA KLLDSGAVRATRFL
Sbjct: 592 AEAERSRVSRRASSSWEDETEIKSLEPLPLHHRHLVGASIQLQKAVKLLDSGAVRATRFL 651

Query: 650 WRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 701
           W+YP AR+IL FYLVFVHLFLMYLLHRLQ QAD  AAREVAESMGL+  NLP
Sbjct: 652 WQYPTARVILFFYLVFVHLFLMYLLHRLQVQADTLAAREVAESMGLSNQNLP 703

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445112|ref|XP_002280503.1| PREDICTED: golgin candidate 1-like [Vitis vinifera]

 Score =  869 bits (2246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/711 (69%), Positives = 562/711 (79%), Gaps = 27/711 (3%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAKLVV+EL+DEQ D Q P SNGQGSQ KK K + K++     
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELSDEQHDGQAPDSNGQGSQTKKTKPKSKSKV---- 56

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKT--QKNGEQQQTNERDA 118
                       Q  TQ +  D+ P+KD AT + E +  T+  +  Q N EQ Q   +DA
Sbjct: 57  ------------QTGTQPAVSDIAPDKDRATRSFENDETTSSNSTAQANNEQLQNGNKDA 104

Query: 119 P--SIPLTEQ-SKDMSKHDADRVEIPETFTDLDT--ATPNGEILNENDSDVHLNHPPSPL 173
               IP  E    DM K +AD  E+  T TD++   +T NGE++N+  +D +   P S  
Sbjct: 105 SVFGIPSLETLPNDMVKPEADLPEVAPTVTDVEAIASTSNGELVNDK-ADANEGQPTSFS 163

Query: 174 PPKEMGIVNEDRIDDAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKVET 230
           P   + IV+ED   +AGQ  KS DAD P +ID   S+   VD P +S++   D+++KVET
Sbjct: 164 PTAGVEIVSEDHPVEAGQNIKSRDADVPSQIDQEGSQSVNVDAPSSSDTQSNDSEIKVET 223

Query: 231 LSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKS 290
           +SN++KQQ  K D  P K QDQLDEAQGLLKT +STGQSKEARL RVCAGL +RLQE KS
Sbjct: 224 ISNQKKQQEHKGDASPMKLQDQLDEAQGLLKTAVSTGQSKEARLTRVCAGLLTRLQECKS 283

Query: 291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVS 350
           ENAQLEELL AE+ELS SYEARIKQL+Q+LS  K EV+KVES + EALAAKNSEIE LV+
Sbjct: 284 ENAQLEELLTAEKELSNSYEARIKQLQQDLSASKIEVSKVESIMVEALAAKNSEIEALVN 343

Query: 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHN 410
           S+DALKKQAA SEGNLAS+Q NMESIMRNRELTETRM+QALREELAS ERRAEEERAAH+
Sbjct: 344 SMDALKKQAAFSEGNLASMQANMESIMRNRELTETRMMQALREELASAERRAEEERAAHH 403

Query: 411 ATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQ 470
           ATKMAAMEREVELEH+A EAS ALARIQR+ADERTAKA E EQKVA+LEVECATL QEL 
Sbjct: 404 ATKMAAMEREVELEHQAVEASTALARIQRVADERTAKAAEFEQKVALLEVECATLNQELH 463

Query: 471 DMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530
           DMEAR +RGQKKSPEEANQ IQMQAWQ+EVERARQGQRDAE KLSS+EAE+QKMRVEMAA
Sbjct: 464 DMEARARRGQKKSPEEANQVIQMQAWQEEVERARQGQRDAEAKLSSMEAELQKMRVEMAA 523

Query: 531 MKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590
           MKRDAEHYSR+EHMELEKRYRELTDLLY KQTQLE MASEKAAA FQLEKE+ RL+E Q 
Sbjct: 524 MKRDAEHYSRQEHMELEKRYRELTDLLYNKQTQLEAMASEKAAAGFQLEKEVKRLKEAQV 583

Query: 591 EAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLW 650
           EAERSR SRR  +SWE+D ++K+LEPLPLHHRH+A AS+QLQKAAKLLDSGAVRATRFLW
Sbjct: 584 EAERSRTSRRGSASWEDDTDIKALEPLPLHHRHMAAASIQLQKAAKLLDSGAVRATRFLW 643

Query: 651 RYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 701
           RYP AR++LLFYLVFVHLFLMYLLH LQEQAD  A+REVA+SMGL T  LP
Sbjct: 644 RYPTARLLLLFYLVFVHLFLMYLLHHLQEQADELASREVAQSMGLATPTLP 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466268|ref|XP_004150848.1| PREDICTED: golgin candidate 1-like [Cucumis sativus] gi|449488127|ref|XP_004157946.1| PREDICTED: golgin candidate 1-like [Cucumis sativus]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/714 (65%), Positives = 546/714 (76%), Gaps = 18/714 (2%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASW KAAE LFEVVDR+AKLVV+EL++EQS+ QT ASNGQGSQ KK K + K +    +
Sbjct: 1   MASWFKAAEGLFEVVDRKAKLVVSELSEEQSNAQTAASNGQGSQTKKTKPKKKKKVL--S 58

Query: 61  DESLKINDTAREQANTQASPVDV--TPNKDTATLAVEKETITTGK--TQKNGEQQQTNER 116
           +E    + T  EQ++T AS  DV  +P K     + E + + + K  TQ N  +   N+ 
Sbjct: 59  NELPTASATPEEQSSTLASKADVVLSPGKHGIVSSTEDDRMISDKSPTQVNERKPDDNDN 118

Query: 117 DAP--SIPLTEQ-SKDMSKHDADRVEIPETFTDLDTATPNG--EILNENDSDVHLNHPPS 171
             P   IP T+    +  K   D ++      D++   P    E+ N N SDVH  +  S
Sbjct: 119 TIPVLEIPSTDGLVVEAGKQIPDGMDTSAAVADVEVIAPTSKTELTNVNASDVHEENLLS 178

Query: 172 PLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPP---VNSESSLKDADVKV 228
             P KE   +N++  D+  Q  K    +   KID ++    P     N ES  KD   KV
Sbjct: 179 T-PNKEAVEINKEHQDEE-QSNKLGSVETISKIDREMSESAPTEFQNNGESQTKDDSNKV 236

Query: 229 ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEY 288
           ++  N++ Q+   AD    K QDQL+EAQ LLKT+ STGQSKEARL +VCAGLSSRLQE+
Sbjct: 237 QSPVNQKHQEN-TADKSSIKVQDQLEEAQMLLKTSNSTGQSKEARLVKVCAGLSSRLQEF 295

Query: 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL 348
           KSENAQLEELL+AERELSRSY+ARIKQLE+ L   K+EV++VES++AEALAAKN+EI  L
Sbjct: 296 KSENAQLEELLIAERELSRSYDARIKQLEENLLESKNEVSRVESSMAEALAAKNTEIGAL 355

Query: 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408
           + S+DALKKQAALSEG+LAS+Q NMES+MRNRELTETRM+QALREELAS ERRAEEER+A
Sbjct: 356 IGSMDALKKQAALSEGSLASMQANMESVMRNRELTETRMMQALREELASAERRAEEERSA 415

Query: 409 HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQE 468
           HNATKMA+MERE+ELEHRA EA+ ALARIQR+ADERT+KA ELEQKVA+LEVEC++L QE
Sbjct: 416 HNATKMASMEREMELEHRAMEAASALARIQRVADERTSKATELEQKVALLEVECSSLNQE 475

Query: 469 LQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 528
           LQD+EAR +RGQKKSP+EANQ IQMQAWQ+EVERARQGQRDAE KLSS+EAE+QKMRVEM
Sbjct: 476 LQDLEARARRGQKKSPDEANQLIQMQAWQEEVERARQGQRDAELKLSSMEAELQKMRVEM 535

Query: 529 AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588
           AAMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLE MASEKAAAEFQLEKE+NR QE 
Sbjct: 536 AAMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLEAMASEKAAAEFQLEKEINRAQEA 595

Query: 589 QSEAE-RSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATR 647
           Q E E      R S +SWEEDAEMKSLEPLPLHHR++ G SVQLQKAAKLLDSGAVRATR
Sbjct: 596 QVEVERSRASRRASSASWEEDAEMKSLEPLPLHHRYMVGTSVQLQKAAKLLDSGAVRATR 655

Query: 648 FLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 701
           FLWRYP AR+ILLFYLVFVHLF+MYLLHRLQ QAD   AREVAESMGLT  NLP
Sbjct: 656 FLWRYPTARLILLFYLVFVHLFMMYLLHRLQAQADTITAREVAESMGLTNPNLP 709

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184316|ref|NP_001189556.1| golgin candidate 1 [Arabidopsis thaliana] gi|330251854|gb|AEC06948.1| golgin candidate 1 [Arabidopsis thaliana]

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/718 (61%), Positives = 536/718 (74%), Gaps = 45/718 (6%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+ KA+++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSKKKARQKLVK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 61  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 117

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 118 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 168

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 169 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 226

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 227 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 286

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 287 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 346

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 347 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 406

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 407 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 466

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+QAWQDEV+RARQGQRDAE 
Sbjct: 467 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 526

Query: 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 527 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 586

Query: 573 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQ 632
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LEPLPL+HRH+A AS QLQ
Sbjct: 587 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMATASTQLQ 646

Query: 633 KAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVA 690
            A KLLDSGAVRATRFLWRYPIAR+ LLFYLVFVHLFLMYL+HRLQEQA+   A+EVA
Sbjct: 647 NAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQEVA 701

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164708702|gb|ABY67248.1| putative golgin-84-like protein [Arabidopsis thaliana]

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/718 (61%), Positives = 535/718 (74%), Gaps = 45/718 (6%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+ KA+++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSKKKARQKLVK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 61  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 117

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 118 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 168

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 169 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 226

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 227 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 286

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 287 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 346

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 347 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 406

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 407 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 466

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+QAWQDEV+RARQGQRDAE 
Sbjct: 467 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 526

Query: 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 527 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 586

Query: 573 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQ 632
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LEPLPL+HRH+  AS QLQ
Sbjct: 587 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMDTASTQLQ 646

Query: 633 KAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVA 690
            A KLLDSGAVRATRFLWRYPIAR+ LLFYLVFVHLFLMYL+HRLQEQA+   A+EVA
Sbjct: 647 NAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQEVA 701

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79557632|ref|NP_179585.3| golgin candidate 1 [Arabidopsis thaliana] gi|85681038|sp|Q8S8N9.2|GOGC1_ARATH RecName: Full=Golgin candidate 1; Short=AtGC1; AltName: Full=Golgin-84 gi|44917433|gb|AAS49041.1| At2g19950 [Arabidopsis thaliana] gi|110738790|dbj|BAF01318.1| hypothetical protein [Arabidopsis thaliana] gi|330251853|gb|AEC06947.1| golgin candidate 1 [Arabidopsis thaliana]

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/718 (61%), Positives = 534/718 (74%), Gaps = 48/718 (6%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+   +++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSK---KKKLVK 57

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 58  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 114

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 115 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 165

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 166 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 223

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 224 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 283

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 284 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 343

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 344 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 403

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 404 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 463

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+QAWQDEV+RARQGQRDAE 
Sbjct: 464 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 523

Query: 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 524 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 583

Query: 573 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQ 632
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LEPLPL+HRH+A AS QLQ
Sbjct: 584 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMATASTQLQ 643

Query: 633 KAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVA 690
            A KLLDSGAVRATRFLWRYPIAR+ LLFYLVFVHLFLMYL+HRLQEQA+   A+EVA
Sbjct: 644 NAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQEVA 698

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832160|ref|XP_002883962.1| hypothetical protein ARALYDRAFT_899882 [Arabidopsis lyrata subsp. lyrata] gi|297329802|gb|EFH60221.1| hypothetical protein ARALYDRAFT_899882 [Arabidopsis lyrata subsp. lyrata]

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/762 (59%), Positives = 536/762 (70%), Gaps = 95/762 (12%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV EL++EQ+D Q PAS  +GSQ K+  S+ KA+++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEELSEEQTDLQLPASGRKGSQGKRTSSKKKARQKLVK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE----R 116
           +ES    D + +Q+    S  +V P+ D A+               +G   QTNE     
Sbjct: 61  EESSNKRDFSGDQSGPGVSQSEVPPSIDEAS--------------SSGPVLQTNEIRTDA 106

Query: 117 DAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATP---NGEILNENDSDVHLNHPPSP- 172
           D  S+    QS   +K D   V   E+  D D A     +G+I   NDS V     PSP 
Sbjct: 107 DVQSVQSLPQSVADTKSDDAAVVGSESVVDGDGAESKHADGDI--PNDSLVQ----PSPS 160

Query: 173 LPPKEMGI-VNEDRIDDAGQITKSADADAPLKIDSKIQAVD--PPV---NSESSLKDADV 226
           LP KE+ + V+E+ +D      +    D+  +   K+++V   P V   N   S  D +V
Sbjct: 161 LPDKEIEVAVSENLVDAPKNGAQRELVDSSKRDLEKLESVVHVPSVGEGNVAQSTGD-EV 219

Query: 227 KV---------------ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKE 271
           KV               +T +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKE
Sbjct: 220 KVGTSINLEKEQEPEVPDTSTNLKREQDRRADTTSVKIQDQLEEAQGLLKATVSTGQSKE 279

Query: 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331
           ARLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+QL+++LS  KSEVTKVE
Sbjct: 280 ARLARVCAGLSSRLQEIKAENAQLEELLSAEQELTKSYEASIRQLQKDLSAAKSEVTKVE 339

Query: 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQAL 391
           S++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESI+RNREL ETRM+QAL
Sbjct: 340 SSMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESILRNRELAETRMMQAL 399

Query: 392 REELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451
           REELA+ ERRAEEE +AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  +L
Sbjct: 400 REELATTERRAEEEHSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADL 459

Query: 452 EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQM-------------QAWQD 498
           EQKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+             QAWQD
Sbjct: 460 EQKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQILANPEELLLIMQIQAWQD 519

Query: 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLY 558
           EV+RARQGQRDAE KLSS+EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLY
Sbjct: 520 EVDRARQGQRDAEEKLSSMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLY 579

Query: 559 YKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLP 618
           YKQTQLETMASEKAAAEFQLEKE+ RL E Q E ERSRVSRR  ++WEED+E+K+LEPLP
Sbjct: 580 YKQTQLETMASEKAAAEFQLEKEVKRLHEAQVEVERSRVSRRPSATWEEDSEIKTLEPLP 639

Query: 619 LHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLV-------------- 664
           L+HRH+A AS QLQ A KLLDSGAVRATRFLWRYPIARI LLFYLV              
Sbjct: 640 LYHRHMATASTQLQNAVKLLDSGAVRATRFLWRYPIARIFLLFYLVRRSLIYSISFALLV 699

Query: 665 ---------------FVHLFLMYLLHRLQEQADNFAAREVAE 691
                          FVHLFLMYLLHRLQEQA+   A+EVAE
Sbjct: 700 NLWYIKMTSFMNLQVFVHLFLMYLLHRLQEQAE---AQEVAE 738

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5JLY8	GOGA5_ORYSJ	No assigned EC number	0.5683	0.9572	0.9464	yes	no
Q8S8N9	GOGC1_ARATH	No assigned EC number	0.6142	0.9557	0.9476	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	701
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-06
pfam09787	509	pfam09787, Golgin_A5, Golgin subfamily A member 5	4e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-04
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	4e-04
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	7e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.002
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.002
pfam13166	713	pfam13166, AAA_13, AAA domain	0.003
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.003
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.003
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.003
PRK12718	510	PRK12718, flgL, flagellar hook-associated protein	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 64.3 bits (157), Expect = 2e-10
 Identities = 82/349 (23%), Positives = 147/349 (42%), Gaps = 37/349 (10%)

Query: 225  DVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSR 284
              ++E L  K ++   K  +   K   +L +    L+  +   + +   L+R  + L   
Sbjct: 676  RREIEELEEKIEELEEKIAEL-EKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 285  LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA---LAAK 341
            L   ++E  QLEE +    +     EA I++LE+ L   + E+ + E+ + E    +   
Sbjct: 735  LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 342  NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM------IQALREEL 395
              E++ L  ++D L+ +  L     A+L+  +ES+ R    TE R+      I+ L E++
Sbjct: 795  KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 396  ASVE----------RRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT 445
             S+              E E  A    + +  E    L     E S  L  ++    E  
Sbjct: 855  ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 446  AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQ 505
             +  EL +K+A LE+    L+  + +++ RL      + EEA         +D+ E AR+
Sbjct: 915  RELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA--LENKIEDDEEEARR 972

Query: 506  GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 554
              +  ENK+  L        V +AA+         EE+ EL++RY  LT
Sbjct: 973  RLKRLENKIKELG------PVNLAAI---------EEYEELKERYDFLT 1006

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.5 bits (155), Expect = 3e-10
 Identities = 61/293 (20%), Positives = 122/293 (41%), Gaps = 11/293 (3%)

Query: 301 AERELSR-SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359
           A+   S       I++LE+++   + ++ ++E  LAE       E+E L   ++ L+K+ 
Sbjct: 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELR----KELEELEEELEQLRKEL 721

Query: 360 ALSEGNLASLQMNMESIMRNRELTETRM--IQALREELASVERRAEEERAAHNATKMAAM 417
                 +++L+ ++  +    E  E R+  +     EL +     EE           A 
Sbjct: 722 EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781

Query: 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477
               ELE +  +    L  ++   DE  A+   L ++ A L     +L++ +   E RL+
Sbjct: 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841

Query: 478 RGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEH 537
             +++  E +     + A   E+E   +   + E++L +L  E   +   +A ++ + E 
Sbjct: 842 DLEEQIEELSEDIESLAA---EIEELEELIEELESELEALLNERASLEEALALLRSELEE 898

Query: 538 YSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590
            S E   ELE +  EL   L   + +L  +       E +++    RL E  S
Sbjct: 899 LSEELR-ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.2 bits (154), Expect = 4e-10
 Identities = 57/269 (21%), Positives = 120/269 (44%), Gaps = 16/269 (5%)

Query: 335 AEALAAKNSEIETL-----VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQ 389
           AE      +E+  L     V  ++ L+++    +  L   +  +E +    +  E + ++
Sbjct: 212 AERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK-LE 270

Query: 390 ALREELASVERRAEEERAAHNATKMAAMEREVELEH---RAAEASMALARIQRIADERTA 446
            LR E++ +E   EE +    A        E + +    R A     L  ++   +E  +
Sbjct: 271 ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330

Query: 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQG 506
           K  EL +++A LE +   L++EL+ +EA L+  + +  E  +   +++  ++++E  R  
Sbjct: 331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES---RLEELEEQLETLRSK 387

Query: 507 QRDAENKLSSLEAEVQKM--RVEMAAMKRDAEHYSREEHME--LEKRYRELTDLLYYKQT 562
               E +++SL  E++++  R+E    +R+      EE ++   E   +EL   L   + 
Sbjct: 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447

Query: 563 QLETMASEKAAAEFQLEKEMNRLQEVQSE 591
           +LE +  E    E  LE+    L+E +  
Sbjct: 448 ELEELQEELERLEEALEELREELEEAEQA 476

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 61.7 bits (150), Expect = 9e-10
 Identities = 73/311 (23%), Positives = 141/311 (45%), Gaps = 20/311 (6%)

Query: 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSR 307
            E   L++    L+  +   + +   L R  A L   L++ +S   +LEE L    E   
Sbjct: 695 NELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELE 754

Query: 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367
             + R+++LE+EL   +  + K    L E +     + + L   ++ L+++   +E  L 
Sbjct: 755 ELQERLEELEEELESLEEALAK----LKEEIEELEEKRQALQEELEELEEELEEAERRLD 810

Query: 368 SLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA 427
           +L+  +ES+ + RE  E   I+ L EE+  +E + +E        +    E + ELE   
Sbjct: 811 ALERELESLEQRRERLEQE-IEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869

Query: 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA 487
           AE       ++ + +E+     ELE+++  LE E A L++E++ +  RL+  + K     
Sbjct: 870 AEKEELEDELKELEEEKE----ELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925

Query: 488 NQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR-VEMAAMKRDAEHYSREEHMEL 546
            + +     + E E     + + E ++  LE E++ +  V + A+         EE+ E+
Sbjct: 926 VE-LPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAI---------EEYEEV 975

Query: 547 EKRYRELTDLL 557
           E+RY EL    
Sbjct: 976 EERYEELKSQR 986

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 59.7 bits (145), Expect = 5e-09
 Identities = 75/310 (24%), Positives = 131/310 (42%), Gaps = 36/310 (11%)

Query: 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS 343
           RL+E + E  +L+E L    E      A +++LE++L   + EV+++E  + E       
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL----QK 288

Query: 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403
           E+  L + I  L++Q  +    LA+L+  +E +    E  E   +  L EELA +E + E
Sbjct: 289 ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE-SKLDELAEELAELEEKLE 347

Query: 404 EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECA 463
           E             E    LE    E    L  ++   +E   +   L  KVA LE++ A
Sbjct: 348 E-----------LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396

Query: 464 TLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQK 523
           +L  E++ +EARL+R                  +D  ER +Q   +   KL   E +  +
Sbjct: 397 SLNNEIERLEARLER-----------------LEDRRERLQQEIEELLKKLEEAELKELQ 439

Query: 524 MRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583
             +E      +     +EE   LE+   EL + L   +  L+    E A  + +L+    
Sbjct: 440 AELE---ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496

Query: 584 RLQEVQSEAE 593
             + ++  +E
Sbjct: 497 LQENLEGFSE 506

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.0 bits (143), Expect = 7e-09
 Identities = 71/353 (20%), Positives = 143/353 (40%), Gaps = 15/353 (4%)

Query: 253 LDEAQGLL--KTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLE-ELLVAERELSRSY 309
           ++EA G+   K      + K  R       L   L+E + +  +LE +   AER      
Sbjct: 161 IEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQE--L 218

Query: 310 EARIKQLEQELSVYK-SEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLAS 368
           +A +++LE  L + K  E+ K    L E L+    E+E L   ++  +K+    +  L  
Sbjct: 219 KAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE 278

Query: 369 LQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAA 428
           L+  +E  ++   L     I+ L  E++ +  R EE        +    E + ++E    
Sbjct: 279 LREELEE-LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337

Query: 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN 488
           E       ++ +           E+    L      L++  + +   L   + +  E  N
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397

Query: 489 QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEK 548
           +  +++    E+E   +       +L  L+ E++++  E+  ++ + E    EE  ELE+
Sbjct: 398 ELEELKR---EIESLEERLERLSERLEDLKEELKELEAELEELQTELEE-LNEELEELEE 453

Query: 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS 601
           +  EL D    +  +LE   +E      +LEKE++ L+      E  + + + 
Sbjct: 454 QLEELRD----RLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQG 502

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 56.6 bits (137), Expect = 4e-08
 Identities = 62/259 (23%), Positives = 114/259 (44%), Gaps = 22/259 (8%)

Query: 363 EGNLASLQMNMESIMRNRELTETRMIQALREELASVER-----RAEEERAAHNATKMAAM 417
           E  L  L+  ++S+ R  E  E    + L+ EL  +E      R EE R      +    
Sbjct: 192 EDILNELERQLKSLERQAEKAER--YKELKAELRELELALLVLRLEELREELEELQEELK 249

Query: 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477
           E E ELE   AE      +++ +  E      ELE+++  L+ E   L  E+  +E + +
Sbjct: 250 EAEEELEELTAELQELEEKLEELRLEV----SELEEEIEELQKELYALANEISRLEQQKQ 305

Query: 478 RGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEH 537
             +++      Q  +++A  +E+E       +   +L+ LE ++++++ E+ +++ + E 
Sbjct: 306 ILRERLANLERQLEELEAQLEELESKLD---ELAEELAELEEKLEELKEELESLEAELEE 362

Query: 538 YSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRV 597
               E  ELE R  EL       + QLET+ S+ A  E Q+    N ++ +++  ER   
Sbjct: 363 -LEAELEELESRLEEL-------EEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414

Query: 598 SRRSWSSWEEDAEMKSLEP 616
            R       E+   K  E 
Sbjct: 415 RRERLQQEIEELLKKLEEA 433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 93/461 (20%), Positives = 180/461 (39%), Gaps = 87/461 (18%)

Query: 216 NSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLA 275
             E  +++   ++E L  K K+  LK      +E  +L E        +   + + +RL 
Sbjct: 263 ELEERIEELKKEIEELEEKVKE--LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320

Query: 276 RVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA---------RIKQLEQELSVYKSE 326
               G+  R++E + +  +LEEL    +EL +  E            K  ++EL   K  
Sbjct: 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR 380

Query: 327 VT-----KVESNLAEALAAKNS---EIETLVSSIDALKKQAALSEGNLASLQ-MNMESIM 377
           +T     K+E  L E   AK     EI  + + I  LKK+    +  +  L+    +  +
Sbjct: 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV 440

Query: 378 RNRELTE----------TRMIQALREELASVE---------------------------- 399
             RELTE          T  ++ + +EL  +E                            
Sbjct: 441 CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500

Query: 400 -----RRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQK 454
                +  EE+   +N  ++     E E   +  E  + L    +   +   K  EL++K
Sbjct: 501 LAEQLKELEEKLKKYNLEELEKKAEEYE---KLKEKLIKLKGEIKSLKKELEKLEELKKK 557

Query: 455 VAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQ------------------MQAW 496
           +A LE +   L++EL ++   L+    +S EE  + ++                  ++  
Sbjct: 558 LAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELERE 617

Query: 497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL 556
           + E+++  +    A  +L+  E  ++++R E+  +++    YS EE+ EL + Y EL+  
Sbjct: 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK---YSEEEYEELREEYLELSRE 674

Query: 557 LYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRV 597
           L   + +LE +   +   +  LEK    L+E +   +    
Sbjct: 675 LAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.9 bits (135), Expect = 6e-08
 Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 19/255 (7%)

Query: 247 TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELS 306
            +E ++L E    LK  I   + + + L      L + L+E +    +L+E + A +E  
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339

Query: 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNL 366
              E  +++LEQ L+  +    ++E  L+  L       E L   +  L+ + A     L
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 367 ASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHR 426
             L+  +ES+    E         L E L  ++   +E  A     +    E   ELE  
Sbjct: 400 EELKREIESLEERLER--------LSERLEDLKEELKELEAELEELQTELEELNEELEEL 451

Query: 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE 486
             +      R++           ELE+++A L+ E   L++EL  +EARL R + +    
Sbjct: 452 EEQLEELRDRLK-----------ELERELAELQEELQRLEKELSSLEARLDRLEAEQRAS 500

Query: 487 ANQAIQMQAWQDEVE 501
                 ++A +  + 
Sbjct: 501 QGVRAVLEALESGLP 515

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 61/329 (18%), Positives = 128/329 (38%), Gaps = 35/329 (10%)

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323
           ++ G               + LQ  +     L+  L + +   R  E R+ +L QELS  
Sbjct: 655 MTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDA 714

Query: 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383
                               +I  +   I+ L+++    +  L  L+ ++ S+ +  E  
Sbjct: 715 S------------------RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE-N 755

Query: 384 ETRMIQALREELASVERRAEEERAAHNATK-MAAMEREVELEHRAAEASMALARIQRIAD 442
               ++ L   +  +E    +   A N  +   +  R  E++   ++    ++RI+    
Sbjct: 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLR 815

Query: 443 ERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVER 502
           E   K   L  +   LE E   LQ++  D++ ++K  +K   E  N   + +  ++E+E 
Sbjct: 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK---EIENLNGKKEELEEELEE 872

Query: 503 ARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQT 562
                RD E++L  L+ E  ++  ++  ++R  E        ELE +  +    L   + 
Sbjct: 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIE--------ELEAQIEKKRKRLSELKA 924

Query: 563 QLETMASEKAAAEFQLEKEMNRLQEVQSE 591
           +LE +  E +    ++E      +E+  E
Sbjct: 925 KLEALEEELS----EIEDPKGEDEEIPEE 949

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 66/314 (21%), Positives = 135/314 (42%), Gaps = 44/314 (14%)

Query: 281  LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAA 340
             S ++ E + E  QLE+     +E     E  +  LEQE+   KSE+ ++E+ + E    
Sbjct: 714  ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773

Query: 341  KN---------------SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385
             +               S I  + + +  L+++ +  E  L  ++  +  +   +E  E 
Sbjct: 774  LHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833

Query: 386  RMIQALREELASVERRAEEERAAHNA-TKMAAMEREVELEHRAAEASMA--LARIQRIAD 442
             + +   + +   E+    E+   N   K   +E E+E E  AA   +   L  +++  D
Sbjct: 834  EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE-ELEAALRDLESRLGDLKKERD 892

Query: 443  ERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVER 502
            E  A+  ELE+K+  LE +    ++ L +++A+L        E   + +       E+E 
Sbjct: 893  ELEAQLRELERKIEELEAQIEKKRKRLSELKAKL--------EALEEEL------SEIED 938

Query: 503  A-RQGQRDAENKLS--SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYY 559
               + +   E +LS   ++AE+Q++  E+ A++      + +E+ E+ KR  EL      
Sbjct: 939  PKGEDEEIPEEELSLEDVQAELQRVEEEIRALE-PVNMLAIQEYEEVLKRLDEL------ 991

Query: 560  KQTQLETMASEKAA 573
             + +   +  E+ A
Sbjct: 992  -KEKRAKLEEERKA 1004

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 51/254 (20%), Positives = 97/254 (38%), Gaps = 9/254 (3%)

Query: 218 ESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARV 277
            + L++ + K+E L      +  +  +   KE   L      L+      + + A L R 
Sbjct: 259 TAELQELEEKLEEL-RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317

Query: 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA 337
              L ++L+E +S+  +L E L    E     +  ++ LE EL     E+      L   
Sbjct: 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE----ELEAELEELESR 373

Query: 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397
           L     ++ETL S +  L+ Q A     +  L+  +E +   RE  +  + + L++   +
Sbjct: 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA 433

Query: 398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM 457
             +  + E            E    LE    E    L   ++  D    +  +L+ ++  
Sbjct: 434 ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493

Query: 458 LEVECATLQQELQD 471
           LE     LQ+ L+ 
Sbjct: 494 LE----RLQENLEG 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 66/320 (20%), Positives = 135/320 (42%), Gaps = 25/320 (7%)

Query: 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA 354
           LEEL   E  + R  +  I +  Q+L   + E  K E   A     +  E   L+   +A
Sbjct: 176 LEELEEVEENIER-LDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEA 234

Query: 355 LKKQAALSEGNLASLQMNMESIMRNRELTETRM--IQALREELASVERRAEEERAAHNAT 412
           L++Q    E  LASL+  +E +       E R+  I+ L EEL    +   EE       
Sbjct: 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE 294

Query: 413 KMAAMEREVELEHRAAEASM-----ALARIQRIADERTAKAGELEQ---KVAMLEVECAT 464
           K+  +E E+    R+          A  R+ ++  E      E+E+   ++         
Sbjct: 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK 354

Query: 465 LQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEV--- 521
           L +E  +++  L+  + +  E   +       +DE++  R+     + +++ L+ E+   
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEF---AETRDELKDYREKLEKLKREINELKRELDRL 411

Query: 522 ----QKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE-- 575
               Q++  E+A +          +  ELE+   +    +  ++ +LE +A++ +  E  
Sbjct: 412 QEELQRLSEELADLNAAIAG-IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470

Query: 576 -FQLEKEMNRLQEVQSEAER 594
            + L++E +R+++  S+ +R
Sbjct: 471 LYDLKEEYDRVEKELSKLQR 490

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5

 Score = 49.8 bits (119), Expect = 4e-06
 Identities = 87/413 (21%), Positives = 166/413 (40%), Gaps = 36/413 (8%)

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RL      L     E +   ++    L  E  + R     ++ L+ +L +  + V + + 
Sbjct: 115 RLQEAAQELRELKSELEDLRSERSRDLSDEESIKRLQRGAVRSLQDKLLLLDAAVKRHDG 174

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           N+  A              ++ L ++ A  +  L  L  +++     ++L +    +   
Sbjct: 175 NVITA----VLIFLKRTLKLEILFQELAERQTALRHLSKHLQEEGELQQLLKLLRAEGES 230

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           E+    + R +  R   +  K     +E  L     ++S A   ++ +  E       ++
Sbjct: 231 EKQELQQYRQKAHRILQSKEKRINFLKEGCL-FEGLDSSTAQIELEELKHESE----HVQ 285

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQ---KKSPEEANQAIQMQAWQDEVERARQGQ-- 507
           +++  LE +   L+ E QD EA         +K P E +Q I       + E     Q  
Sbjct: 286 EEITKLEGQIIQLRSEAQDREAEASGEAESFRKQPRELSQQI-APQITTKQELELYYQEL 344

Query: 508 ---RDAENKLSSL--------EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL 556
              R+     SS         E+E QK+R  + A  + +         +LE R  +LT  
Sbjct: 345 YHYREDLGNQSSPLNIRLTFRESEKQKLRTALTARAKTSSWS------DLESRLTQLTQS 398

Query: 557 LYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEP 616
           L  KQT LE + +EK A   QLE+ + +L    S +  S + +    +  +DA+ +   P
Sbjct: 399 LVQKQTMLEWLTTEKNALRIQLERLVTQLHSQGSNSAPSSILQEY-VNLTDDAKSRV--P 455

Query: 617 LPLHHR-HIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHL 668
           L +  +      + + ++AA  +D+  +R   FL RYP  R+ ++ Y+  +HL
Sbjct: 456 LAMKDKCFDNRGARRKKRAASSIDTIGIRLGIFLRRYPKDRVSVIVYVALLHL 508

Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1. Length = 509

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 64/302 (21%), Positives = 124/302 (41%), Gaps = 35/302 (11%)

Query: 220 SLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCA 279
            L++   ++E L  + K+   + ++       +L E +  L+         E  +     
Sbjct: 233 RLEELREELEELQEELKEAEEELEE----LTAELQELEEKLEELRLEVSELEEEIEE--- 285

Query: 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES---NLAE 336
            L   L    +E ++LE+         +    R+  LE++L   ++++ ++ES    LAE
Sbjct: 286 -LQKELYALANEISRLEQQK-------QILRERLANLERQLEELEAQLEELESKLDELAE 337

Query: 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELA 396
            LA    ++E L   +++L+ +       L +    +ES +   E           E L 
Sbjct: 338 ELAELEEKLEELKEELESLEAELE----ELEAELEELESRLEELE--------EQLETLR 385

Query: 397 SVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVA 456
           S   + E + A+ N        R   LE R       +  + +  +E  A+  EL+ ++ 
Sbjct: 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELE 443

Query: 457 MLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516
            LE E   LQ+EL+ +E  L+   ++  EEA QA+   A + E+ + +      E    +
Sbjct: 444 ELEEELEELQEELERLEEALEE-LREELEEAEQAL--DAAERELAQLQARLDSLERLQEN 500

Query: 517 LE 518
           LE
Sbjct: 501 LE 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.7 bits (110), Expect = 4e-05
 Identities = 76/401 (18%), Positives = 165/401 (41%), Gaps = 15/401 (3%)

Query: 217  SESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLAR 276
            ++ + K  + K    + K+ ++A KAD+   K ++   +A    K      ++ EA  A 
Sbjct: 1292 ADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351

Query: 277  V-CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLA 335
               A   +   E K+E A+ ++    ++  +   +A  K+   E      E  K    L 
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411

Query: 336  EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREEL 395
            +A AAK           D  KK+A   +      +   E   +  E  +        EE 
Sbjct: 1412 KAAAAKKKA--------DEAKKKAE-EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462

Query: 396  ASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKV 455
               +++AEE + A  A K A   ++ +   + AE +   A   + A E   KA E ++  
Sbjct: 1463 ---KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519

Query: 456  AMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLS 515
               + + A   +E +  +   K  +KK  +E  +A +++   +E ++A + ++  E+K  
Sbjct: 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK-AEEKKKAEEAKKAEEDKNM 1578

Query: 516  SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA- 574
            +L    +  + E A ++   + Y  E+ M+ E+  +     +  ++ +      +K    
Sbjct: 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQL 1638

Query: 575  EFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLE 615
            + +  +E  + +E++   E +++     +   E+ + K+ E
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679

Length = 2084

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 5e-05
 Identities = 75/394 (19%), Positives = 168/394 (42%), Gaps = 42/394 (10%)

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELS---RSYEARIKQLEQEL 320
           I+   S+   L      L   ++E +    ++EEL      L    R  E +I++LE+ +
Sbjct: 209 INEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI 268

Query: 321 SVYKSEVTKVESNLAE--ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378
              K E+ ++E  + E   L  K  E   L    +    +    E  L+ L+  +  I  
Sbjct: 269 EELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328

Query: 379 NRELTET--RMIQALREELASVERRAEEERAAHNATKMAAMEREVELE-HRAAEASMALA 435
             +  E     ++ L+++L  +E+R EE    H   +  A  ++ ELE  +     +   
Sbjct: 329 RIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE-AKAKKEELERLKKRLTGLTPE 387

Query: 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA---RLKRGQKKSP------EE 486
           ++++  +E      E+E++++ +      L++E+++++     LK+ + K P       E
Sbjct: 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE 447

Query: 487 ANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR------------- 533
            ++   ++ +  E++R  +  ++ E K   L  E++++   +                  
Sbjct: 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKE 507

Query: 534 ---DAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE-KAAAEFQ-----LEKEMNR 584
                + Y+ EE  +  + Y +L + L   + +++++  E +   E +     LEK+++ 
Sbjct: 508 LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDE 567

Query: 585 LQEVQSEAERSRVSRRSWSSWEE-DAEMKSLEPL 617
           L+E  +E  +  +    + S EE +  +K LEP 
Sbjct: 568 LEEELAELLK-ELEELGFESVEELEERLKELEPF 600

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.9 bits (109), Expect = 7e-05
 Identities = 82/387 (21%), Positives = 157/387 (40%), Gaps = 22/387 (5%)

Query: 221 LKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTT----ISTGQSKEARLAR 276
           +K+A  K+E L  +  +     +D     +++L E + L +          + +   L  
Sbjct: 180 IKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEE 239

Query: 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT---KVESN 333
             A L    +  +   A+L E+   E E  +  E  +++LE+ L   + ++    ++E  
Sbjct: 240 RLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELERE 299

Query: 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALRE 393
           + E L  +   +  L+  ++ L ++    E  L  L+  +E +       E   +   + 
Sbjct: 300 IEE-LEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLES-----ELEELAEEKN 353

Query: 394 ELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ 453
           ELA +     +E           +E+ +E   +  E   A+  ++    E +A   E+++
Sbjct: 354 ELAKLLEERLKELEERLEELEKELEKALERLKQLEE---AIQELKEELAELSAALEEIQE 410

Query: 454 KVAMLEVECATLQQELQDMEARLK--RGQKKSPEEANQAIQMQAWQDEVER-ARQGQRDA 510
           ++  LE E   L++EL+++E  +K    Q    E     I   A   E      Q   + 
Sbjct: 411 ELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEE 470

Query: 511 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE 570
             K      E++   +E    +   E   REE  ELEK  REL + L      LE   + 
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELI---ELLELEEAL 527

Query: 571 KAAAEFQLEKEMNRLQEVQSEAERSRV 597
           K   E +LEK  N L+E++   E+ ++
Sbjct: 528 KEELEEKLEKLENLLEELEELKEKLQL 554

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 8e-05
 Identities = 79/380 (20%), Positives = 151/380 (39%), Gaps = 31/380 (8%)

Query: 234  KRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENA 293
            ++ ++A KA+D    E  +  E     +       +K+A  AR    +    +  K+E+A
Sbjct: 1140 RKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDA 1199

Query: 294  QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID 353
            +  E      E  ++ EAR  +  ++       V K E    +A  AK +E E     I 
Sbjct: 1200 RKAEAARKAEEERKAEEARKAEDAKKAE----AVKKAEEAKKDAEEAKKAEEERNNEEI- 1254

Query: 354  ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATK 413
              +K       + A  Q  +++        E R    L++  A  +++A+E + A    K
Sbjct: 1255 --RKFEEARMAHFARRQAAIKA-------EEARKADELKK--AEEKKKADEAKKAEEKKK 1303

Query: 414  MAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473
                +++ E   +A EA       ++ AD    KA E ++     + E      E +  E
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363

Query: 474  ARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLE----AEVQKMRVEMA 529
             + +  +KK  E   +A   +   +E ++A + ++ AE      +    A   K + + A
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423

Query: 530  AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK--EMNRLQE 587
              K+ AE   + +  E +K+  E       K  + +  A E   AE   +K  E  +  E
Sbjct: 1424 --KKKAEEKKKAD--EAKKKAEEAK-----KADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474

Query: 588  VQSEAERSRVSRRSWSSWEE 607
             + +AE ++ +  +    EE
Sbjct: 1475 AKKKAEEAKKADEAKKKAEE 1494

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 41/195 (21%), Positives = 89/195 (45%), Gaps = 12/195 (6%)

Query: 408 AHNATKMAAMEREV-ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466
                K+  +E ++ ELE   AE    L  ++   ++   +  EL ++++ L  + A L+
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 467 QELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRV 526
            E++ +E R+ +  K   E      +++  ++ +E A +   +AE ++  LEA++++++ 
Sbjct: 740 AEVEQLEERIAQLSK---ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796

Query: 527 EMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586
           E+ A         RE   EL      L +     + +LE++    AA E +LE    +++
Sbjct: 797 ELKA--------LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 587 EVQSEAERSRVSRRS 601
           E+  + E        
Sbjct: 849 ELSEDIESLAAEIEE 863

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 9/220 (4%)

Query: 389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKA 448
           + + E    +E   E+      A      E E ELE    +    L  + R         
Sbjct: 677 REIEELEEKIEELEEKIAELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDL 735

Query: 449 GELEQKVAMLEVECATLQQELQD----MEARLKRGQKKSPEEANQAIQMQAWQDEVERAR 504
             LE +V  LE   A L +EL +    +E   +R ++   E A    +++  + ++E+ +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 505 QGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQL 564
           +  +     L  L AE+  +  E A ++   E   R      E+R  +L + +      +
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIA-ATERRLEDLEEQIEELSEDI 854

Query: 565 ETMASEKAAAEFQLEK---EMNRLQEVQSEAERSRVSRRS 601
           E++A+E    E  +E+   E+  L   ++  E +    RS
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 51/247 (20%), Positives = 96/247 (38%), Gaps = 28/247 (11%)

Query: 218  ESSLKDADVKVETLSNKRKQQALKADDPPTKEQD---QLDEAQGLLKTTISTGQSKEARL 274
            E +L     ++E L  KR+    + ++   + ++   +LD  +  L++     +  E  +
Sbjct: 771  EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 275  ARV----------CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324
              +             L   L+E + E  +L+E L          E  +K+LE+E    +
Sbjct: 831  EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 325  SEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI----MRNR 380
             E+ ++ES LAE       EIE L   ++ L+ +    E  L  L+  +E      +   
Sbjct: 891  EELRELESELAEL----KEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETE 946

Query: 381  ELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRI 440
               E   ++   E L  V  RA EE            ER  EL+ +  +   A  ++  +
Sbjct: 947  LEREIERLEEEIEALGPVNLRAIEEYE-------EVEERYEELKSQREDLEEAKEKLLEV 999

Query: 441  ADERTAK 447
             +E   +
Sbjct: 1000 IEELDKE 1006

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 63/343 (18%), Positives = 141/343 (41%), Gaps = 43/343 (12%)

Query: 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNL------ 334
           L   ++E K    +LE+ +     +    E  IK+ E+EL     E+ ++ S L      
Sbjct: 167 LGEVIKEIKRRIERLEKFIKRTENI----EELIKEKEKELEEVLREINEISSELPELREE 222

Query: 335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALRE- 393
            E L  +  E+E L   I+ L+K+    EG+   L+  +  +    E  +   I+ L E 
Sbjct: 223 LEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE-IEELEEK 281

Query: 394 --ELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRI---ADERTAKA 448
             EL  ++ +AEE     +      ++   E+E R +     +  I+      +E+  + 
Sbjct: 282 VKELKELKEKAEEYIKL-SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340

Query: 449 GELEQKVAMLEVECATLQ---QELQDMEARLKRGQKKSPEEANQAIQ-MQAWQDEVERAR 504
            EL++K+  LE     L+   +  ++ +A+ +  ++          + ++   +E+E+A+
Sbjct: 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAK 400

Query: 505 QGQRDAENKL----SSLEAEVQKMRVEMAAMKRD-------AEHYSREEHMELEKRYREL 553
           +   +  +K+      L+ E+++++  +  +K+            + E   EL + Y   
Sbjct: 401 EEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTA- 459

Query: 554 TDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSR 596
                    +L+ +  E    E +  K    L+E++   ++  
Sbjct: 460 ---------ELKRIEKELKEIEEKERKLRKELRELEKVLKKES 493

Length = 880

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 19/153 (12%)

Query: 330 VESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQ 389
            +  L+  ++ K+S ++ L S I  L    +L       LQ                 + 
Sbjct: 40  AQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQ---------------DSVA 84

Query: 390 ALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAG 449
            LR  L++ E  AE  R      ++A        E RA E +  L   ++++    A+  
Sbjct: 85  NLRASLSAAE--AERSRLQALLAELAGAGAA--AEGRAGELAQELDSEKQVSARALAQVE 140

Query: 450 ELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482
            L Q++A L  + A L+  L   E R +  Q K
Sbjct: 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAK 173

Length = 343

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 16/160 (10%)

Query: 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN 333
           L+R  +G  S L    S+ A+L +LL  ER+ ++  +  +  L   LS  ++E +++++ 
Sbjct: 44  LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103

Query: 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALRE 393
           LAE   A             A + +A      L S +      +   EL   + I ALR 
Sbjct: 104 LAELAGA-----------GAAAEGRAGELAQELDSEKQVSARALAQVELL-NQQIAALRR 151

Query: 394 ELASVER--RAEEERAAHNATKMAAMERE--VELEHRAAE 429
           +LA++E    A E+R   +  K+A + R   V L  R  E
Sbjct: 152 QLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQE 191

Length = 343

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 57/309 (18%), Positives = 119/309 (38%), Gaps = 31/309 (10%)

Query: 269 SKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT 328
           S+E   A +   +    +E +    +L ELL  E  L    E ++++LE  L   +    
Sbjct: 491 SREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550

Query: 329 KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI 388
           K++    + L  +  ++E  +  +  L ++  L       L+   E +         + +
Sbjct: 551 KLQL---QQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERL---------KEL 598

Query: 389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKA 448
           +   +EL     + EE   +         E E ELE    E    L ++   A+      
Sbjct: 599 KKKLKELEERLSQLEELLQSLEL-----SEAENELEEAEEELESELEKLNLQAELEELLQ 653

Query: 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQR 508
             LE+    +E   A +++ELQ +E   +  +K          +++  ++E+E+ R+   
Sbjct: 654 AALEELEEKVEELEAEIRRELQRIENEEQLEEKLE--------ELEQLEEELEQLREELE 705

Query: 509 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL-YYKQTQLETM 567
           +   KL  +E  ++++    A ++       ++E  +LEK    L +L     +  L   
Sbjct: 706 ELLKKLGEIEQLIEELESRKAELEEL-----KKELEKLEKALELLEELREKLGKAGLRAD 760

Query: 568 ASEKAAAEF 576
                 A+ 
Sbjct: 761 ILRNLLAQI 769

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 55/271 (20%), Positives = 108/271 (39%), Gaps = 29/271 (10%)

Query: 326 EVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385
           +  K+   L E +    ++IE L   +  L +     E  L +L+          EL E 
Sbjct: 168 KYEKLSELLKEVIKEAKAKIEELEGQLSELLED---IEDLLEALE---------EELKEL 215

Query: 386 RMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT 445
           + ++ ++EE    E   E E            ER  ELE          AR+  I     
Sbjct: 216 KKLEEIQEEQEEEELEQEIEALE---------ERLAELEEEKERLEELKARLLEIESLEL 266

Query: 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQ 505
                 E+++  LE       +EL++   RL+  +++  E   +   ++A  +E+E   +
Sbjct: 267 EALKIREEELRELERL----LEELEEKIERLEELEREIEELEEELEGLRALLEELEELLE 322

Query: 506 GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLE 565
             +  E +L  LE +++K+  E+  +  +    ++     LE+R +EL + L   + +LE
Sbjct: 323 KLKSLEERLEKLEEKLEKLESELEELAEEKNELAK----LLEERLKELEERLEELEKELE 378

Query: 566 TMASEKAAAEFQLEKEMNRLQEVQSEAERSR 596
                    E  +++    L E+ +  E  +
Sbjct: 379 KALERLKQLEEAIQELKEELAELSAALEEIQ 409

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 40/211 (18%), Positives = 83/211 (39%), Gaps = 22/211 (10%)

Query: 391 LREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGE 450
           + E+   +ER   E   A     +   +RE E      E      + + I  +  +   E
Sbjct: 193 IDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEE 252

Query: 451 LEQ---KVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ-AIQMQAWQDEVERARQG 506
           LE+   +++ LE     ++Q L+++  ++K       EE  +   ++   + E+    + 
Sbjct: 253 LEKLTEEISELEKRLEEIEQLLEELNKKIK---DLGEEEQLRVKEKIGELEAEIASLERS 309

Query: 507 QRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLET 566
             + E +L   E  + K+  E+  +  + E        ELE+   E       ++ + + 
Sbjct: 310 IAEKERELEDAEERLAKLEAEIDKLLAEIE--------ELEREIEE-------ERKRRDK 354

Query: 567 MASEKAAAEFQLEKEMNRLQEVQSEAERSRV 597
           +  E A  + +LE     L+EV  E   +R 
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRD 385

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 62/383 (16%), Positives = 145/383 (37%), Gaps = 25/383 (6%)

Query: 216 NSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLA 275
             +  L++   ++  + +   +     ++   + +  L+E +  ++  +   + +   L 
Sbjct: 246 EEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIER-LEELEREIEELE 304

Query: 276 RVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLA 335
               GL + L+E +    +L+ L     +L    E  ++   +EL+  K+E+ K+     
Sbjct: 305 EELEGLRALLEELEELLEKLKSLEERLEKLEEKLEK-LESELEELAEEKNELAKLLEERL 363

Query: 336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREEL 395
           + L  +  E+E  +       KQ   +   L      + + +   +      ++ L +EL
Sbjct: 364 KELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQ----EELEELEKEL 419

Query: 396 ASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMA-----------LARIQRIADER 444
             +ER  EE        +    + E +    A  A                  + + +  
Sbjct: 420 EELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELY 479

Query: 445 TAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERAR 504
             +  ELE++++  E E A L++E++++E  L+        E      ++  +   E   
Sbjct: 480 ELELEELEEELS-REKEEAELREEIEELEKELRE------LEEELIELLELEEALKEELE 532

Query: 505 QGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQL 564
           +     EN L  LE   +K++++    +        +E  EL +  R L      +  +L
Sbjct: 533 EKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLL-RTRKEELEEL 591

Query: 565 ETMASEKAAAEFQLEKEMNRLQE 587
                E      +LE+ +++L+E
Sbjct: 592 RERLKELKKKLKELEERLSQLEE 614

Length = 908

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 44/218 (20%)

Query: 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
           E  IK+L+ EL   +    + ES L   ++   S   +L S +  LKK+  +       L
Sbjct: 412 EQDIKKLQAELQQAR----QNESELRNQISLLTSLERSLKSDLGQLKKENDM-------L 460

Query: 370 QMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA-A 428
           Q  + S++  +        Q  ++ + S+E+R + E                  + R  A
Sbjct: 461 QTKLNSMVSAK--------QKDKQSMQSMEKRLKSEA-----------------DSRVNA 495

Query: 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECA-TLQQELQDMEARLKR--GQKKSPE 485
           E  +A  + ++  +E TA       + A    ECA +L+Q  QD+E  +K+     K  E
Sbjct: 496 EKQLAEEKKRKKEEEETAARAA--AQAAASREECAESLKQAKQDLEMEIKKLEHDLKLKE 553

Query: 486 EANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQK 523
           E  + ++ +A   E+ + ++ +++ E  +S+L+A   K
Sbjct: 554 EECRMLEKEA--QELRKYQESEKETEVLMSALQAMQDK 589

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 48/236 (20%), Positives = 103/236 (43%), Gaps = 9/236 (3%)

Query: 293 AQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA---LAAKNSEIETLV 349
           A L  L +  R L RS   ++  +  +L   ++E+   +     A     A  SE++   
Sbjct: 57  ATLAILFLLNRNL-RSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKAR 115

Query: 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409
              +A++++ A +  NLA  Q  +  + +  +  +TR+       LA   R+ E +  + 
Sbjct: 116 QEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT-----LAEQRRQLEAQAQSL 170

Query: 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469
            A++        +L+ +  +  +  A+I++ A     +A   + +   L    A  QQ  
Sbjct: 171 QASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTA 230

Query: 470 QDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525
           Q ++ R  +  +K+ + A +A Q++  + +++R    Q   E +++ LEA  Q   
Sbjct: 231 QAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYV 286

Length = 499

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 15/186 (8%)

Query: 302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361
           E      Y+  I+QLE+ +  Y+S + K    L E++     E       ++ LK     
Sbjct: 273 EAHFDEEYQELIEQLEELIDKYESHIEKALEEL-ESILDTEKENSEFKLDVEELKALLEA 331

Query: 362 ----SEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAM 417
                E NL  L+  ++    + EL     I  L E +  +     E    HN  K+  +
Sbjct: 332 LEEILEKNLQKLEEKLKDPSTSIELES---ITDLIESINDIIDAINELIREHNE-KIDNL 387

Query: 418 EREVEL------EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471
           ++E          H  AE    +   Q+           LE+++  LE E   L++E+++
Sbjct: 388 KKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKE 447

Query: 472 MEARLK 477
           +E +L 
Sbjct: 448 LEKQLT 453

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 44/250 (17%), Positives = 98/250 (39%), Gaps = 16/250 (6%)

Query: 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAA 340
           L     E  ++  +L E     +E       +++ LE +L   + E+ +  S     LAA
Sbjct: 265 LQHLHGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAA 324

Query: 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400
             SE+E L     A +        ++  LQ +++          + + + +   L ++  
Sbjct: 325 DRSELELLEDQKGAFEDA------DIEQLQADLD----QLPSIRSEL-EEVEARLDALTG 373

Query: 401 RAEEERAAHNATKMAAMEREVELEHRAAEASMAL--ARIQRIADERTAKAGELEQKVAML 458
           + ++ +  +   K    E+      +  E   A+   + ++ A           Q    L
Sbjct: 374 KHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQL 433

Query: 459 EVECATLQQELQDMEARLKR--GQKKSPE-EANQAIQMQAWQDEVERARQGQRDAENKLS 515
           E       +E  ++E RL R   +  S      +  Q++   + +E+A++ Q  AE  + 
Sbjct: 434 EAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVE 493

Query: 516 SLEAEVQKMR 525
            L++E++++R
Sbjct: 494 QLQSELRQLR 503

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 14/221 (6%)

Query: 385 TRMIQALREELASVERRAEEERAAH----NATKMAAMEREVELEHRAAEASMALARIQRI 440
              ++     L   E R +E ++A          A +E  +      A A  AL  +Q I
Sbjct: 686 DERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGRASPAGALDALELLQNI 745

Query: 441 ADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQD-- 498
             E+   A +L Q++A +E + A  ++E++ +   +      +P +   A  ++      
Sbjct: 746 -KEKLQAADDLRQRIAAMERDLARFEEEVEALAEAVAPEMLGTPADE-TARALKQRLKRA 803

Query: 499 -----EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYREL 553
                  E+  +   +AE ++S   A + +    + A+ R A   + EE +   +R    
Sbjct: 804 RDTAAAAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLRAARCTTIEELLAAVERSDTY 863

Query: 554 TDLLYYKQTQLETMASEKAAAEFQ-LEKEMNRLQEVQSEAE 593
            +L         T+         + L  E   L   +  A 
Sbjct: 864 RELRKRIAALERTLVRAGGGLSLEALVAEAAALDPDELPAR 904

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 40.7 bits (96), Expect = 0.003
 Identities = 51/257 (19%), Positives = 96/257 (37%), Gaps = 29/257 (11%)

Query: 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415
           ++Q A  +  L  +   +  +       E    QA  + L  V+             +  
Sbjct: 299 RRQLAAEQYRLVEMARELAELNEAESDLEQD-YQAASDHLNLVQ----TALRQQEKIERY 353

Query: 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ--ELQDME 473
             + E ELE R  E +  +       +E  A+A   E++V  L+ + A  QQ  ++Q   
Sbjct: 354 QADLE-ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTR 412

Query: 474 ARLKRGQKKSPEEANQAIQM------------QAWQDEVERARQGQRDAENKLSSLEAEV 521
           A   +   ++ E A Q   +            + +Q + + A +     E KLS  +A  
Sbjct: 413 AIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAH 472

Query: 522 QKMRVEMAAMKRDAEHYSREE----HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577
            +       +++ A   SR E      EL +R RE   L      QL+ +    +  E +
Sbjct: 473 SQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLA----EQLQQLRMRLSELEQR 528

Query: 578 LEKEMNRLQEVQSEAER 594
           L ++  R + + +E  +
Sbjct: 529 LRQQ-QRAERLLAEFCK 544

Length = 1486

>gnl|CDD|79176 PRK12718, flgL, flagellar hook-associated protein FlgL; Provisional

 Score = 39.8 bits (92), Expect = 0.004
 Identities = 26/93 (27%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
           EA + +L+++LS  +  +T  +  LA ALA   S+  ++ S+ DA +KQA   E  L + 
Sbjct: 20  EAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQA---EQALGAQ 76

Query: 370 QMNMESIMRNRELTETRMIQALREELASVERRA 402
              ++S+++N +    R+++A    ++  +R+A
Sbjct: 77  TNTLQSVVKNMQEMLKRVVEAGNGTMSDADRQA 109

Length = 510

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	701
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	100.0
KOG4677	554	consensus Golgi integral membrane protein [Intrace	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.52
KOG0963	629	consensus Transcription factor/CCAAT displacement	99.27
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.95
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.94
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.89
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.89
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.87
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.87
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.85
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	98.84
PRK02224	880	chromosome segregation protein; Provisional	98.74
PRK02224	880	chromosome segregation protein; Provisional	98.73
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.62
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.59
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.58
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.56
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.56
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.56
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.55
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.54
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.53
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.47
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.46
PRK03918	880	chromosome segregation protein; Provisional	98.45
PRK03918	880	chromosome segregation protein; Provisional	98.43
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.42
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.4
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.35
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.33
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.33
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.32
PRK04863	1486	mukB cell division protein MukB; Provisional	98.27
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.25
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.25
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.23
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.22
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.21
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.17
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.17
PRK04863	1486	mukB cell division protein MukB; Provisional	98.13
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.09
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.06
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.96
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.93
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.92
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.91
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.88
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	97.86
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.85
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.81
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.79
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.78
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.72
PHA02562	562	46 endonuclease subunit; Provisional	97.67
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.65
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.6
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.55
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	97.51
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.49
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.47
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.45
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.42
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.41
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.33
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.31
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.29
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.28
PRK04778	569	septation ring formation regulator EzrA; Provision	97.23
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.15
PRK01156	895	chromosome segregation protein; Provisional	97.12
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.04
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.04
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.03
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.02
PRK09039	343	hypothetical protein; Validated	97.02
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.99
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.99
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.83
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.82
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.78
PRK04778	569	septation ring formation regulator EzrA; Provision	96.76
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.74
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.72
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.71
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.69
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.62
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.53
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.51
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.5
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.48
PRK09039	343	hypothetical protein; Validated	96.48
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.46
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.39
PLN03188	1320	kinesin-12 family protein; Provisional	96.35
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.34
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	96.27
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.22
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	96.22
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.19
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.15
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.12
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.1
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.06
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.03
PF13514	1111	AAA_27: AAA domain	96.01
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.01
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.88
PRK11281	1113	hypothetical protein; Provisional	95.85
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.83
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.81
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.8
KOG4677	554	consensus Golgi integral membrane protein [Intrace	95.66
PF14992	280	TMCO5: TMCO5 family	95.53
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	95.5
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.31
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.28
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	95.23
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.23
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	95.14
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	95.08
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.07
PRK10929	1109	putative mechanosensitive channel protein; Provisi	95.03
PRK01156	895	chromosome segregation protein; Provisional	95.01
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	94.83
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.77
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.75
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.59
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	94.55
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.53
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.52
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	94.47
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	94.35
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	94.33
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.27
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.26
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	93.99
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.93
PRK10884	206	SH3 domain-containing protein; Provisional	93.68
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	93.67
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.65
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.58
KOG0018	1141	consensus Structural maintenance of chromosome pro	93.41
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	93.4
KOG1937	521	consensus Uncharacterized conserved protein [Funct	93.23
KOG0963	629	consensus Transcription factor/CCAAT displacement	93.15
PLN02939	977	transferase, transferring glycosyl groups	93.13
COG4372	499	Uncharacterized protein conserved in bacteria with	92.93
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	92.87
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.86
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	92.74
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	92.7
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.69
KOG1003	205	consensus Actin filament-coating protein tropomyos	92.65
COG4372	499	Uncharacterized protein conserved in bacteria with	92.47
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	92.25
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.23
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	92.16
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	92.06
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	91.99
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	91.92
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	91.75
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	91.6
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.58
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	90.49
KOG0249	916	consensus LAR-interacting protein and related prot	90.37
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.11
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	90.02
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	89.99
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	89.98
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	89.87
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.77
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	89.54
COG2433	652	Uncharacterized conserved protein [Function unknow	89.5
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	89.43
KOG0249	916	consensus LAR-interacting protein and related prot	89.39
PRK10929	1109	putative mechanosensitive channel protein; Provisi	89.29
PRK11281	1113	hypothetical protein; Provisional	89.28
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.25
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	89.21
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	89.03
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.01
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	89.0
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	88.84
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.81
PF13514	1111	AAA_27: AAA domain	88.61
PRK10884	206	SH3 domain-containing protein; Provisional	88.54
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.25
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	88.16
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	88.04
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	87.91
COG2433	652	Uncharacterized conserved protein [Function unknow	87.85
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	87.68
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	87.09
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	86.86
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	86.84
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.37
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	86.37
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	86.29
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	86.27
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	85.94
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	85.76
PRK10246	1047	exonuclease subunit SbcC; Provisional	85.45
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	85.17
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	84.68
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	84.31
PF12240	205	Angiomotin_C: Angiomotin C terminal; InterPro: IPR	83.79
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	83.49
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	82.82
KOG0288	459	consensus WD40 repeat protein TipD [General functi	82.79
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	82.1
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	80.77
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	80.72

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=100.00  E-value=4e-33  Score=313.49  Aligned_cols=371  Identities=26%  Similarity=0.348  Sum_probs=254.9

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          271 EARLARVCAGLSSRLQEYKSENAQLEELLVA--------------ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE  336 (701)
Q Consensus       271 e~qLa~~~~RLrk~~~elksr~aqLEell~e--------------l~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~e  336 (701)
                      .+++++++++|.+..++++....+|+++-++              +....+.|.+++..|+.++......+......|..
T Consensus       108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~  187 (511)
T PF09787_consen  108 SSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLK  187 (511)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            4499999999999999999999999997111              11124888889999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHHHH-H
Q 005339          337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL----------TETRMIQALREELASVERRAEE-E  405 (701)
Q Consensus       337 aLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~----------~ekeilqSLE~eLkslq~~le~-E  405 (701)
                      +...++..+..|+.+.. +...+........+++...+.++.....          ++..+++++++.|.+|+.+... .
T Consensus       188 rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~  266 (511)
T PF09787_consen  188 RTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEG  266 (511)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence            99999999999999888 4456666666777776666665555544          3788999999999999984333 1


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCCh
Q 005339          406 RAAHNA-TKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP  484 (701)
Q Consensus       406 ~~aH~a-Tr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~  484 (701)
                      ...+.. +..+.      |..+..-+.+-+..++..+.+-+.++.+++.++.   .+.+.+++..+.+.........+  
T Consensus       267 ~~~~~~~~el~~------l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~--  335 (511)
T PF09787_consen  267 FDSSTNSIELEE------LKQERDHLQEEIQLLERQIEQLRAELQDLEAQLE---GEQESFREQPQELSQQLEPELTT--  335 (511)
T ss_pred             cccccchhcchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhch--
Confidence            221111 11111      2222222223333444444444444433333222   22233333333333333333222  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh----HHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 005339          485 EEANQAIQMQAWQDEVERARQG----QRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK  560 (701)
Q Consensus       485 ~ea~q~~qLk~lkeEL~~lRq~----qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eK  560 (701)
                       ++    +++-...|+..+++.    ...+..++...+.|+++|+.++...-      ...+..++|.||+.||+.|++|
T Consensus       336 -e~----e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~------~~s~~~elE~rl~~lt~~Li~K  404 (511)
T PF09787_consen  336 -EA----ELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA------SSSSWNELESRLTQLTESLIQK  404 (511)
T ss_pred             -HH----HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh------ccCCcHhHHHHHhhccHHHHHH
Confidence             11    122233344333322    23456788889999999999986633      1233579999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC--CCcccccchhcccCCCccc-cccchhhhHHHHHHHhH
Q 005339          561 QTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS--WSSWEEDAEMKSLEPLPLH-HRHIAGASVQLQKAAKL  637 (701)
Q Consensus       561 Q~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~~~sr~sr~~--~~~~~dd~~~~~~~p~~~~-~~~~~~~~rrvk~Aa~~  637 (701)
                      |+++|.|.+||++|.+|||++...+++ .  ....+.++..  ++.|.+|..  ...|.++. .+|++++++||++||++
T Consensus       405 Q~~lE~l~~ek~al~lqlErl~~~l~~-~--~~~~~~~~~~~~~~~~~~d~~--~r~~~~~~~~~~d~~~~~r~~~a~~~  479 (511)
T PF09787_consen  405 QTQLESLGSEKNALRLQLERLETQLKE-E--ASNNRPSSILMKYSNSEDDAE--SRVPLLMKDSPHDIGVARRVKRAASV  479 (511)
T ss_pred             HHHHHHHHhhhhhccccHHHHHHHHHh-h--ccCCCCchhhHhhccCCCchh--hhhhhhccCCCccchHHHHHHHHHHH
Confidence            999999999999999999999999986 1  1112222222  223444433  33555444 45677899999999999


Q ss_pred             HhhhhHhHhHhhhcchhHHHHHHHHHHHHHHH
Q 005339          638 LDSGAVRATRFLWRYPIARIILLFYLVFVHLF  669 (701)
Q Consensus       638 lDs~sir~g~fLRRyP~aRl~~l~Y~vlLHLW  669 (701)
                      ||+|+||+|+||||||++|+||||||++||||
T Consensus       480 iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW  511 (511)
T PF09787_consen  480 IDSFSIRLGIFLRRYPMARIFVIIYMALLHLW  511 (511)
T ss_pred             HhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=100.00  E-value=4.1e-30  Score=275.44  Aligned_cols=378  Identities=15%  Similarity=0.139  Sum_probs=248.4

Q ss_pred             CChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339          245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (701)
Q Consensus       245 k~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ  324 (701)
                      +|+.....-+.+  ..+..++.-..|++||   ++||++..+.++.++..||..     .-...|++++.-+++.+.+.+
T Consensus       157 ~~a~d~~~s~~~--q~~d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~-----Sal~~lq~~L~la~~~~~~~~  226 (554)
T KOG4677|consen  157 SYAPDLGRSKGE--QYRDYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF-----SALRSLQDKLQLAEEAVSMHD  226 (554)
T ss_pred             hcccccccchhh--hHhhHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhh
Confidence            444444333333  5677888899999999   999999999999999999996     345678889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHhhh---HHHHHHHHHHHHHH
Q 005339          325 SEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES-----IMRNREL---TETRMIQALREELA  396 (701)
Q Consensus       325 ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~r-----l~e~l~~---~ekeilqSLE~eLk  396 (701)
                      +.+.++...|..++-.++.++.++.+-++-+...+-..|.++.+.+...+-     .++++.+   .+..|+++.++   
T Consensus       227 e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~k---  303 (554)
T KOG4677|consen  227 ENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDK---  303 (554)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCc---
Confidence            999999999999999999999999999999999999999999998888665     2333333   25555555553   


Q ss_pred             HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHH
Q 005339          397 SVERRAEEERAAHN-----ATKMAAMEREVELEHRAAEASMALARIQRIADERTA----KAGELEQKVAMLEVECATLQQ  467 (701)
Q Consensus       397 slq~~le~E~~aH~-----aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~a----ea~eLeqQls~LE~ElkqLkQ  467 (701)
                      +.-.+.+.|...|-     +--..++.+...|..+..++..-.-.++..+.+++.    +-..+..-...|+.+++-+++
T Consensus       304 stas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~  383 (554)
T KOG4677|consen  304 STASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYH  383 (554)
T ss_pred             chhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHH
Confidence            11111112111110     000111112222222211111111111111111110    001111111123444445555


Q ss_pred             HHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHH
Q 005339          468 ELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELE  547 (701)
Q Consensus       468 eLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE  547 (701)
                      +.++.+....|...+                           ...+|-..+.++++|+++++. +  +   -......++
T Consensus       384 e~e~~~~~~~r~~~~---------------------------~qski~dk~~el~kl~~~l~~-r--~---~~~s~~~l~  430 (554)
T KOG4677|consen  384 ETEAEGTFSSRVNLK---------------------------KQSKIPDKQYELTKLAARLKL-R--A---WNDSVDALF  430 (554)
T ss_pred             HHHHhhhhhhhccch---------------------------hhccCcchHHHHHHHHHHHHH-H--h---hhhhHHHHh
Confidence            555555555544322                           234555667777777776532 1  0   001247788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcccccchhcccCCCccccccchhh
Q 005339          548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGA  627 (701)
Q Consensus       548 ~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~~~sr~sr~~~~~~~dd~~~~~~~p~~~~~~~~~~~  627 (701)
                      ++.+.||+.|++||.+++.+..+++.|.++||+++...-  .+        +-....+++.+.+......+..++.+-.+
T Consensus       431 ~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N--~~--------~~v~~~~~~n~~~~~~~~v~~l~~d~~~~  500 (554)
T KOG4677|consen  431 TTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN--LV--------EDVDTKLNLNTKFKCHDVVIDLYRDLKDR  500 (554)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc--cc--------cccceeeccCCCcccccccchHhhhhhhh
Confidence            999999999999999999999999999999999875431  10        11122333433333333344445554444


Q ss_pred             hHHHHHHHhHHhhhhHhHhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhch
Q 005339          628 SVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQE  679 (701)
Q Consensus       628 ~rrvk~Aa~~lDs~sir~g~fLRRyP~aRl~~l~Y~vlLHLWV~~VL~~~~~  679 (701)
                       .++++|++.||+|++++|.|||+||.||||+++||++|||||||||++|||
T Consensus       501 -~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~YmallHLWvmivlLTYTP  551 (554)
T KOG4677|consen  501 -QQLRAARSKVDKGSAELEKILRLLPSARIFWKNYMALLHLWVMIVLLTYTP  551 (554)
T ss_pred             -HHHHHHHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence             899999999999999999999999999999999999999999999999999

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.52  E-value=8.6e-12  Score=147.78  Aligned_cols=311  Identities=15%  Similarity=0.160  Sum_probs=238.1

Q ss_pred             hhhcCCCChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005339          239 ALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ  318 (701)
Q Consensus       239 ~~~~~ek~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQa  318 (701)
                      ..-.++|.+++.++|++++..+++|++.           +.+|++..+++.+++.++++..+.+.+++..|+.....|-.
T Consensus       534 ~~~~~~kv~~~rk~le~~~~d~~~e~~~-----------~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~  602 (1317)
T KOG0612|consen  534 AADSLEKVNSLRKQLEEAELDMRAESED-----------AGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSK  602 (1317)
T ss_pred             HHHHHhhHHHHHHHHHHhhhhhhhhHHH-----------HhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence            3445789999999999999999999995           99999999999999999999999999999999987777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHH
Q 005339          319 ELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET-RMIQALREELAS  397 (701)
Q Consensus       319 eL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ek-eilqSLE~eLks  397 (701)
                      +...++........    ........+.+++.++..|+......+..+.+++...+..++.++++++ .+..-++.+++.
T Consensus       603 ~~~~~~~~~e~~~~----~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~  678 (1317)
T KOG0612|consen  603 ENKKLRSELEKERR----QRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKM  678 (1317)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666665555444    2233567788999999999999999999999999988888888888877 446677799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHH
Q 005339          398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT-------AKAGELEQKVAMLEVECATLQQELQ  470 (701)
Q Consensus       398 lq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~-------aea~eLeqQls~LE~ElkqLkQeLq  470 (701)
                      +++.++++..+|+.++..  .+           ...+++++..+.+++       +.+..+..++++|.+++.+.++.++
T Consensus       679 ~q~~~eq~~~E~~~~~L~--~~-----------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~  745 (1317)
T KOG0612|consen  679 LQNELEQENAEHHRLRLQ--DK-----------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLN  745 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHh--hH-----------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchh
Confidence            999999999999988332  22           455677777777777       3346788999999999999999988


Q ss_pred             HHHHHHHhcccCChHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHH-----------
Q 005339          471 DMEARLKRGQKKSPEEANQAIQ-----------MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM-----------  528 (701)
Q Consensus       471 ~lE~e~~r~qek~~~ea~q~~q-----------Lk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~-----------  528 (701)
                      .++.........+.....++++           |+....++++     +.++.+..++..++..+++++           
T Consensus       746 ~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t-----~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~  820 (1317)
T KOG0612|consen  746 ELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT-----KMLEKQLKKLLDELAELKKQLEEENAQLRGLN  820 (1317)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            8888777776555544443332           2222233332     334445555555555554443           


Q ss_pred             -------HHhhhhh--hhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          529 -------AAMKRDA--EHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  588 (701)
Q Consensus       529 -------~~Lk~ql--e~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~  588 (701)
                             +.++.++  ++||   ...|++++.+..+...++.   ++++.|+..+..|.+.+.+.+++.
T Consensus       821 ~~~~~~~k~lq~~leae~~~---~~~~ktq~~e~~e~~~ek~---~~~~~er~~~~~Q~~~~~~~~~~~  883 (1317)
T KOG0612|consen  821 RSAWGQMKELQDQLEAEQCF---SSLMKTQIIEDREEIAEKN---QSLQAERMLLPKQVEQAVTKADSE  883 (1317)
T ss_pred             ccchhhhHHHHHHHHHHHHH---HHHHHhhhhhhhhhhhhcc---cchhhhhhhcchhcchhhchhhhH
Confidence                   3455555  3344   7889999999999999997   889999999999999888777665

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=99.27  E-value=4.1e-09  Score=119.21  Aligned_cols=143  Identities=14%  Similarity=0.204  Sum_probs=89.1

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339          301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR  380 (701)
Q Consensus       301 el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l  380 (701)
                      ..+++...++..+..||..+..-+..+...++.+.+..+++.+++.-+...+..++..+..+..+.+.+..+......+.
T Consensus       193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~  272 (629)
T KOG0963|consen  193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK  272 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            44455666777888888888888988999998888888889998888877666666666666665555555543332222


Q ss_pred             h-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          381 E-------LTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE  443 (701)
Q Consensus       381 ~-------~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeE  443 (701)
                      .       +.....+..++.++..|=..+.....+|...+..-......|+.++..+...+.++..+|+.
T Consensus       273 ~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~  342 (629)
T KOG0963|consen  273 KLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS  342 (629)
T ss_pred             hhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2       12334455566666666666665555555555544445555555554444444444444443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.95  E-value=4.3e-05  Score=93.45  Aligned_cols=7  Identities=14%  Similarity=0.363  Sum_probs=2.7

Q ss_pred             HHHHHHH
Q 005339          668 LFLMYLL  674 (701)
Q Consensus       668 LWV~~VL  674 (701)
                      -++.|+|
T Consensus       614 ~~~~~~l  620 (1164)
T TIGR02169       614 PAFKYVF  620 (1164)
T ss_pred             HHHHHHC
Confidence            3344433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.94  E-value=2.5e-05  Score=95.49  Aligned_cols=7  Identities=29%  Similarity=0.249  Sum_probs=2.7

Q ss_pred             hHhhhcc
Q 005339          646 TRFLWRY  652 (701)
Q Consensus       646 g~fLRRy  652 (701)
                      -.||+.+
T Consensus       564 i~~l~~~  570 (1164)
T TIGR02169       564 IELLKRR  570 (1164)
T ss_pred             HHHHHhc
Confidence            3344433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.89  E-value=3.7e-05  Score=93.55  Aligned_cols=58  Identities=14%  Similarity=0.247  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          520 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL  578 (701)
Q Consensus       520 elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qL  578 (701)
                      ++..|+.++..|...++.|-.. ......|+..|..++......++.|...+..+....
T Consensus       966 ~~~~l~~~i~~lg~aiee~~~~-~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~ 1023 (1179)
T TIGR02168       966 DEEEARRRLKRLENKIKELGPV-NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAI 1023 (1179)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666555444321 111224555555555555555555554444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.89  E-value=5e-05  Score=92.47  Aligned_cols=31  Identities=26%  Similarity=0.163  Sum_probs=15.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMASEKAAA  574 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL  574 (701)
                      ..|..|+..|...+..-...+..+..+...+
T Consensus       996 ~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~ 1026 (1179)
T TIGR02168       996 EELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555444444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.87  E-value=0.00015  Score=82.96  Aligned_cols=87  Identities=25%  Similarity=0.269  Sum_probs=58.6

Q ss_pred             HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ  577 (701)
Q Consensus       498 eEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~q  577 (701)
                      .+|.++......++..+.....+.++|+.++...++.    ..+--.+..+.|.+|...|.--|..-|.|..|+.-|..-
T Consensus       371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~----n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~y  446 (546)
T PF07888_consen  371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDC----NRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEY  446 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444445555667778888887655542    222345666777788887777777788888888888888


Q ss_pred             HHHHHHHHHHH
Q 005339          578 LEKEMNRLQEV  588 (701)
Q Consensus       578 LE~~~~~~~~~  588 (701)
                      .+++..|++..
T Consensus       447 i~~Le~r~~~~  457 (546)
T PF07888_consen  447 IERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHh
Confidence            88888888765

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.87  E-value=0.00011  Score=93.90  Aligned_cols=50  Identities=26%  Similarity=0.317  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCCh
Q 005339          435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP  484 (701)
Q Consensus       435 aelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~  484 (701)
                      ..++..+.+......++..++...+.++-+++.++++....+...++...
T Consensus      1051 ~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~ 1100 (1930)
T KOG0161|consen 1051 KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIK 1100 (1930)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33333334444444555555555555555555555555555555554433

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.85  E-value=4.2e-05  Score=97.39  Aligned_cols=156  Identities=21%  Similarity=0.298  Sum_probs=79.6

Q ss_pred             CCCChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339          243 DDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV  322 (701)
Q Consensus       243 ~ek~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~  322 (701)
                      +.|.++.-+.+++.++.|.+.+.....|-.+|...+.+|...+.++.....+=..       ..-.++..+..|+.+|..
T Consensus       980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~-------~r~e~Ek~~rkle~el~~ 1052 (1930)
T KOG0161|consen  980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR-------IRMELEKAKRKLEGELKD 1052 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            3444444445555555555555444444455555555554444444333222222       222233344445555544


Q ss_pred             HHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh------HHHHHHHHHHH
Q 005339          323 YKSEVT---KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL------TETRMIQALRE  393 (701)
Q Consensus       323 EQ~~l~---q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~------~ekeilqSLE~  393 (701)
                      .|+...   .....+...+..+..++..|..++......+..+...+.+++....-|.+++..      +.++...-|..
T Consensus      1053 ~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ 1132 (1930)
T KOG0161|consen 1053 LQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSE 1132 (1930)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444333   222355556666666666666666666666665555555555555555555554      12333666666


Q ss_pred             HHHHHHHHHHHH
Q 005339          394 ELASVERRAEEE  405 (701)
Q Consensus       394 eLkslq~~le~E  405 (701)
                      +|..++.+++..
T Consensus      1133 ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1133 ELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHH
Confidence            677777666654

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=98.84  E-value=4.8e-08  Score=101.89  Aligned_cols=49  Identities=20%  Similarity=0.380  Sum_probs=45.3

Q ss_pred             HHHHhHHhhhhHhHhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhchh
Q 005339          632 QKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQ  680 (701)
Q Consensus       632 k~Aa~~lDs~sir~g~fLRRyP~aRl~~l~Y~vlLHLWV~~VL~~~~~~  680 (701)
                      ..-++.+|++.+.+|+|+..++.+|.|||||+|+||+|||++|+.+.+.
T Consensus       195 ~~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~~~~  243 (248)
T PF08172_consen  195 YKRLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYMSHS  243 (248)
T ss_pred             HhcCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6668899999999999999999999999999999999999999986554

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PRK02224 chromosome segregation protein; Provisional

Probab=98.74  E-value=0.00087  Score=80.86  Aligned_cols=17  Identities=12%  Similarity=0.108  Sum_probs=7.2

Q ss_pred             ChhhhhhHHHHHHHHHh
Q 005339          246 PTKEQDQLDEAQGLLKT  262 (701)
Q Consensus       246 ~~~lqkQLee~n~~Lrs  262 (701)
                      +..++..+.++...+..
T Consensus       208 l~~~~~~l~el~~~i~~  224 (880)
T PRK02224        208 LNGLESELAELDEEIER  224 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444333

>PRK02224 chromosome segregation protein; Provisional

Probab=98.73  E-value=0.00081  Score=81.11  Aligned_cols=16  Identities=6%  Similarity=0.090  Sum_probs=6.9

Q ss_pred             hHHHHHHHHHHHHHHh
Q 005339          516 SLEAEVQKMRVEMAAM  531 (701)
Q Consensus       516 slE~elqkLr~e~~~L  531 (701)
                      .+..++..++.++..+
T Consensus       624 ~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        624 ERRERLAEKRERKREL  639 (880)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444433

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.62  E-value=0.0018  Score=80.87  Aligned_cols=98  Identities=21%  Similarity=0.292  Sum_probs=44.6

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005339          278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV-ESNLAEALAAKNSEIETLVSSIDALK  356 (701)
Q Consensus       278 ~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~-es~~~eaLsak~~eie~Le~rl~~Le  356 (701)
                      ..++..-..++..+...|+.. .+.-.+...|..++..++..+...+-..... -..+.+.++.....+.++...+....
T Consensus       188 l~~~~~~~~el~~~l~~L~~q-~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~  266 (1163)
T COG1196         188 LERLEDLLEELEKQLEKLERQ-AEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAE  266 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555542 1222233444444444444333222111111 12344444445555555555555555


Q ss_pred             HHHHHHHhHHHHHHHHHHHH
Q 005339          357 KQAALSEGNLASLQMNMESI  376 (701)
Q Consensus       357 ~el~~~K~rleele~E~~rl  376 (701)
                      .++..++.++.++..+...+
T Consensus       267 ~~i~~~~~~~~e~~~~~~~~  286 (1163)
T COG1196         267 KEIEELKSELEELREELEEL  286 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555544

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.59  E-value=0.00066  Score=81.01  Aligned_cols=71  Identities=20%  Similarity=0.366  Sum_probs=53.3

Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          511 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (701)
Q Consensus       511 e~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~  589 (701)
                      ...|...+.++..+..++..+-.+        ..++..+|.-|.+.|..|+...+-|.+++.+|.++|+...+.+..-.
T Consensus       293 ~~eL~rk~~E~~~~qt~l~~~~~~--------~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~  363 (775)
T PF10174_consen  293 KLELSRKKSELEALQTRLETLEEQ--------DSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQ  363 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            344445666677777766554432        36778899999999999999999999999999999998877665544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=98.58  E-value=0.0011  Score=83.63  Aligned_cols=35  Identities=11%  Similarity=0.007  Sum_probs=16.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL  578 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qL  578 (701)
                      .++..++..|+-.-.....++..|..+...|..+|
T Consensus      1057 ~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606      1057 QKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444445555555555554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.56  E-value=0.0019  Score=80.71  Aligned_cols=38  Identities=16%  Similarity=0.114  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ  586 (701)
Q Consensus       549 rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~  586 (701)
                      .+.++.+.+.....+.+.+...+..|.-.++.+....+
T Consensus       971 e~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~ 1008 (1163)
T COG1196         971 EYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR 1008 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555556666666666666666555544433

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.56  E-value=0.0021  Score=78.30  Aligned_cols=185  Identities=19%  Similarity=0.184  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---------
Q 005339          290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA---------  360 (701)
Q Consensus       290 sr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~---------  360 (701)
                      .++.-.++.+....++.+.|.+.+.+++.+|...|....+....    +.....+...|.....-+..+..         
T Consensus       494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~----~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~  569 (1317)
T KOG0612|consen  494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADS----LEKVNSLRKQLEEAELDMRAESEDAGKLRKHS  569 (1317)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhh
Confidence            33333444444444455555555555555555554444443321    11223333333332222222222         


Q ss_pred             -HHHhHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          361 -LSEGNLASLQMNMESIMRNRELTETR--MIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARI  437 (701)
Q Consensus       361 -~~K~rleele~E~~rl~e~l~~~eke--ilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALael  437 (701)
                       .....+.....+.+.+.+.+.+++..  .+.-..+.+.+.....-.....|.....++..+..+|++.+.....-+...
T Consensus       570 ~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~  649 (1317)
T KOG0612|consen  570 KELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKV  649 (1317)
T ss_pred             hhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHH
Confidence             22222222222333444444443322  222222333333333333344555556666666666666652222222222


Q ss_pred             HHHHHHHH-HHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHhc
Q 005339          438 QRIADERT-AKAGELEQ--KVAMLEVECATLQQELQDMEARLKRG  479 (701)
Q Consensus       438 QrkLeEe~-aea~eLeq--Qls~LE~ElkqLkQeLq~lE~e~~r~  479 (701)
                      +. +..+. ....+.++  .-..++..++.+.++++.+..+.+++
T Consensus       650 ~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~  693 (1317)
T KOG0612|consen  650 EE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL  693 (1317)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 11111 11122222  11223455556666666666666666

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.56  E-value=0.0014  Score=77.64  Aligned_cols=119  Identities=21%  Similarity=0.225  Sum_probs=65.0

Q ss_pred             hhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005339          249 EQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT  328 (701)
Q Consensus       249 lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~  328 (701)
                      |.-|+.++..+|.+=-       .+-++.+.||++ +..++-.+++|++       --..+......||.+|.+.+-+..
T Consensus       229 Lr~QvrdLtEkLetlR-------~kR~EDk~Kl~E-lekmkiqleqlqE-------fkSkim~qqa~Lqrel~raR~e~k  293 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLR-------LKRAEDKAKLKE-LEKMKIQLEQLQE-------FKSKIMEQQADLQRELKRARKEAK  293 (1243)
T ss_pred             HHHHHHHHHHHHHHHH-------hhhhhhHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556655555554321       122234666654 2334444444444       334455667778888877777666


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339          329 KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (701)
Q Consensus       329 q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (701)
                      ..+.    .-+.-..++.++.+.+..+.-+-...+.|.+.+|.+...++++++.++..
T Consensus       294 eaqe----~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletd  347 (1243)
T KOG0971|consen  294 EAQE----AKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETD  347 (1243)
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6653    22224455666665555544454555566666666666666665555544

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.55  E-value=6.1e-05  Score=78.03  Aligned_cols=83  Identities=20%  Similarity=0.301  Sum_probs=59.4

Q ss_pred             HhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          505 QGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR  584 (701)
Q Consensus       505 q~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~  584 (701)
                      .....++.++..++.++..+.+.++.|.-..+.++ .....|+.+|+.|++.|.+-..+++..+.....|..++..+...
T Consensus       134 eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~-~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~e  212 (237)
T PF00261_consen  134 ERAEAAESKIKELEEELKSVGNNLKSLEASEEKAS-EREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDE  212 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334455666666666666666665554443333 55688999999999999999999998888888888888888776


Q ss_pred             HHHH
Q 005339          585 LQEV  588 (701)
Q Consensus       585 ~~~~  588 (701)
                      +...
T Consensus       213 L~~~  216 (237)
T PF00261_consen  213 LEKE  216 (237)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR00606 rad50 rad50

Probab=98.54  E-value=0.0018  Score=81.86  Aligned_cols=20  Identities=0%  Similarity=-0.011  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 005339          554 TDLLYYKQTQLETMASEKAA  573 (701)
Q Consensus       554 tE~L~eKQ~qlE~L~~Er~s  573 (701)
                      ..++.....++..|.+.++.
T Consensus      1053 ~~e~~~l~~~~~~l~~~~a~ 1072 (1311)
T TIGR00606      1053 KQEHQKLEENIDLIKRNHVL 1072 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444443333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.53  E-value=0.00045  Score=79.10  Aligned_cols=86  Identities=12%  Similarity=0.167  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhh---hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE---HYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA  572 (701)
Q Consensus       496 lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle---~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~  572 (701)
                      ..+||...|.....|..++..+|.....|.+++..|+.++.   ..|...-.+.+..|..|+++|...-..++.|-.=+-
T Consensus       294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki  373 (546)
T KOG0977|consen  294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKI  373 (546)
T ss_pred             HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHh
Confidence            34666666666666667776666666666666666665541   123333466677778888888777777777777777


Q ss_pred             HHHHHHHHH
Q 005339          573 AAEFQLEKE  581 (701)
Q Consensus       573 sL~~qLE~~  581 (701)
                      +|...+..-
T Consensus       374 ~Ld~EI~~Y  382 (546)
T KOG0977|consen  374 SLDAEIAAY  382 (546)
T ss_pred             HHHhHHHHH
Confidence            766665543

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.47  E-value=0.0067  Score=69.90  Aligned_cols=88  Identities=28%  Similarity=0.356  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA  574 (701)
Q Consensus       495 ~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL  574 (701)
                      ..+.++..+++.-......+.+++.++.+++.++...+...... ......+-..|..++.+..+-...++....|..-+
T Consensus       320 ~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~-k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~  398 (522)
T PF05701_consen  320 KEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKA-KEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKA  398 (522)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555666677777777777765544322110 01234556667777766666555555555555555


Q ss_pred             HHHHHHHHH
Q 005339          575 EFQLEKEMN  583 (701)
Q Consensus       575 ~~qLE~~~~  583 (701)
                      ...++.+..
T Consensus       399 k~E~e~~ka  407 (522)
T PF05701_consen  399 KEEAEQTKA  407 (522)
T ss_pred             HHHHHHHHH
Confidence            444444433

Several sequences in this family are described as being myosin heavy chain-like.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.46  E-value=0.00022  Score=73.86  Aligned_cols=225  Identities=19%  Similarity=0.226  Sum_probs=134.9

Q ss_pred             CChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339          245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (701)
Q Consensus       245 k~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ  324 (701)
                      |+..++.++|++...+..--..|...+.    ...+.......+..++..||+-|....+++.....++..++..+....
T Consensus         2 K~~~l~~eld~~~~~~~~~~~~l~~~~~----~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~e   77 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEEAEEKLKEAEK----RAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESE   77 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666665555443322111111    233455566677777888888777777777778888888888888887


Q ss_pred             HHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005339          325 SEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR  401 (701)
Q Consensus       325 ~~l~q~es---~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~  401 (701)
                      ..+..+++   ...+++...+..+.........++..+.....++.-++.++.++-++....+.+ +..|+.+|..+.+.
T Consensus        78 r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k-i~eLE~el~~~~~~  156 (237)
T PF00261_consen   78 RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK-IKELEEELKSVGNN  156 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-HHHHHHHHHHHHHH
Confidence            77777775   333444445555555555555566666666666666677777776666666666 67777777766665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 005339          402 AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR  478 (701)
Q Consensus       402 le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r  478 (701)
                      +.    ........+..|+..++..+..|..-+.++....+..-.++..|+.++..|+.++...+.+...+..++..
T Consensus       157 lk----~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~  229 (237)
T PF00261_consen  157 LK----SLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ  229 (237)
T ss_dssp             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH----HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            53    22233445555666666666555555555555555555555555555555555555555555444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK03918 chromosome segregation protein; Provisional

Probab=98.45  E-value=0.011  Score=71.41  Aligned_cols=27  Identities=11%  Similarity=0.485  Sum_probs=12.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005339          451 LEQKVAMLEVECATLQQELQDMEARLK  477 (701)
Q Consensus       451 LeqQls~LE~ElkqLkQeLq~lE~e~~  477 (701)
                      +..++..+......++..+..++..+.
T Consensus       403 l~~~i~~l~~~~~~~~~~i~eL~~~l~  429 (880)
T PRK03918        403 IEEEISKITARIGELKKEIKELKKAIE  429 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444433

>PRK03918 chromosome segregation protein; Provisional

Probab=98.43  E-value=0.012  Score=71.06  Aligned_cols=10  Identities=10%  Similarity=0.268  Sum_probs=4.3

Q ss_pred             hhhcchhHHH
Q 005339          648 FLWRYPIARI  657 (701)
Q Consensus       648 fLRRyP~aRl  657 (701)
                      ++.--|++.+
T Consensus       816 lilDEp~~~l  825 (880)
T PRK03918        816 LILDEPTPFL  825 (880)
T ss_pred             EEEeCCCccc
Confidence            3444444444

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.42  E-value=0.0091  Score=76.11  Aligned_cols=100  Identities=13%  Similarity=0.216  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005339          270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV  349 (701)
Q Consensus       270 ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le  349 (701)
                      .+.=+.+.-..|++....+++.+..++.-+.-..++...|...+..+.++.......+..++    ..+...+..+..+.
T Consensus       655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~----~~i~~~~q~~~~~s  730 (1822)
T KOG4674|consen  655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQ----STISKQEQTVHTLS  730 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            34445555666667777777777777776666667777777777766666665554444433    34445566666777


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHH
Q 005339          350 SSIDALKKQAALSEGNLASLQMNM  373 (701)
Q Consensus       350 ~rl~~Le~el~~~K~rleele~E~  373 (701)
                      ..+..+...++.+...++.+-.|+
T Consensus       731 ~eL~~a~~k~~~le~ev~~LKqE~  754 (1822)
T KOG4674|consen  731 QELLSANEKLEKLEAELSNLKQEK  754 (1822)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHH
Confidence            777777777777777777776663

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.40  E-value=0.0095  Score=68.57  Aligned_cols=63  Identities=24%  Similarity=0.256  Sum_probs=41.7

Q ss_pred             hhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339          248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS  321 (701)
Q Consensus       248 ~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~  321 (701)
                      .+|.+++++..+...           |......|++....++.++..|+..|...++.+..|......+.....
T Consensus       140 ~lQ~qlE~~qkE~ee-----------L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e  202 (546)
T PF07888_consen  140 LLQNQLEECQKEKEE-----------LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSE  202 (546)
T ss_pred             HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478888876544322           333567777777888888888888777777777777665555544433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.35  E-value=0.015  Score=68.46  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=18.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339          449 GELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (701)
Q Consensus       449 ~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q  480 (701)
                      .-|...++..++-++.++.+|+.++.-..+.-
T Consensus       280 s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~  311 (1265)
T KOG0976|consen  280 SVLGDELSQKEELVKELQEELDTLKQTRTRAD  311 (1265)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444455556666666666666665544443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.33  E-value=0.01  Score=71.11  Aligned_cols=124  Identities=23%  Similarity=0.345  Sum_probs=85.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHH
Q 005339          280 GLSSRLQEYKSENAQLEELLVAERELSRSYEA-------RIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLV  349 (701)
Q Consensus       280 RLrk~~~elksr~aqLEell~el~ek~~~Le~-------rl~~LQaeL~~EQ~~l~q~es---~~~eaLsak~~eie~Le  349 (701)
                      .|+..+..-.+.+..||..|+.+.+-...|+.       ....+..+|...+.....+++   ...-.|+.++.++..|.
T Consensus       228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q  307 (775)
T PF10174_consen  228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ  307 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555555566666666666665555554544       345555566666666666663   45556778888888888


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005339          350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE  404 (701)
Q Consensus       350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~  404 (701)
                      .++..+......++..++.+..++......-+.+... +..|+++|......++.
T Consensus       308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsd-ve~Lr~rle~k~~~l~k  361 (775)
T PF10174_consen  308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSD-VEALRFRLEEKNSQLEK  361 (775)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888877777777777 77777776666655543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.33  E-value=0.025  Score=71.16  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=10.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLET  566 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~  566 (701)
                      ..|+.++..+...|...+...+.
T Consensus       603 e~L~~~l~~~~~~l~~~~~~~~~  625 (1201)
T PF12128_consen  603 EELRERLEQAEDQLQSAEERQEE  625 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555454444444433333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.32  E-value=0.015  Score=74.13  Aligned_cols=92  Identities=23%  Similarity=0.318  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHH
Q 005339          306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET  385 (701)
Q Consensus       306 ~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ek  385 (701)
                      -..++.+|..|+.+|...+..+....+.+.+-....+-.+.+....+..+..++......+..++.....+...++.+.+
T Consensus       800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k  879 (1822)
T KOG4674|consen  800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK  879 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555789999999999998888888777777777777788888888888888888888888888888888888888777


Q ss_pred             HHHHHHHHHHHHH
Q 005339          386 RMIQALREELASV  398 (701)
Q Consensus       386 eilqSLE~eLksl  398 (701)
                      + +.+.......+
T Consensus       880 ~-l~~~~~~~~~l  891 (1822)
T KOG4674|consen  880 R-LKSAKTQLLNL  891 (1822)
T ss_pred             H-HHHhHHHHhhc
Confidence            7 55554443333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.27  E-value=0.018  Score=73.51  Aligned_cols=293  Identities=16%  Similarity=0.174  Sum_probs=140.7

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005339          277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK  356 (701)
Q Consensus       277 ~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le  356 (701)
                      ..++.+++..+..+.....|..+.+..+....+..++..|+.+....+.-+...+. +.    .....+..+...+..+.
T Consensus       287 EAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-~l----r~q~ei~~l~~~LeELe  361 (1486)
T PRK04863        287 EALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-AL----RQQEKIERYQADLEELE  361 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHH
Confidence            34666677777777777777777777777777778888888877776654333332 11    11233334444444444


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 005339          357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA---------  427 (701)
Q Consensus       357 ~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~---------  427 (701)
                      .++......++++..+...+..++...+.+ +..++..+..+++.+..-...    ..........++.+.         
T Consensus       362 e~Lee~eeeLeeleeeleeleeEleelEee-LeeLqeqLaelqqel~elQ~e----l~q~qq~i~~Le~~~~~~~~~~~S  436 (1486)
T PRK04863        362 ERLEEQNEVVEEADEQQEENEARAEAAEEE-VDELKSQLADYQQALDVQQTR----AIQYQQAVQALERAKQLCGLPDLT  436 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCCCC
Confidence            444444444444444444444444444444 444444444433333321111    111111222233321         


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHH-HH--H------HHHHHH
Q 005339          428 -AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN-QA--I------QMQAWQ  497 (701)
Q Consensus       428 -aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~-q~--~------qLk~lk  497 (701)
                       .+|...+...+.++.+....+.++++++.+++..++++++....+....    .++.-..+ ..  +      +.+.+-
T Consensus       437 dEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~----Gkv~~~~a~~~~~~~~~~~~~~~~~~  512 (1486)
T PRK04863        437 ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIA----GEVSRSEAWDVARELLRRLREQRHLA  512 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCcCHHHHHHHHHHHHHHhHHHHHHH
Confidence             4455556666666666667777777777777766666665554433222    22222111 00  0      111111


Q ss_pred             HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ  577 (701)
Q Consensus       498 eEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~q  577 (701)
                      .-+..+|.+..+|+.++. .....+++-.+...   .+...+ .....++.=..++...+..-....+++...+..++.+
T Consensus       513 ~~~~~~~~~~~~l~~~~~-~q~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  587 (1486)
T PRK04863        513 EQLQQLRMRLSELEQRLR-QQQRAERLLAEFCK---RLGKNL-DDEDELEQLQEELEARLESLSESVSEARERRMALRQQ  587 (1486)
T ss_pred             HhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HhCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122222222333222222 11112222222111   111101 1234444444555555555566666677777777777


Q ss_pred             HHHHHHHHHHH
Q 005339          578 LEKEMNRLQEV  588 (701)
Q Consensus       578 LE~~~~~~~~~  588 (701)
                      ++.+..++...
T Consensus       588 ~~qL~~~i~~l  598 (1486)
T PRK04863        588 LEQLQARIQRL  598 (1486)
T ss_pred             HHHHHHHHHHH
Confidence            77777666554

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.25  E-value=0.024  Score=66.83  Aligned_cols=103  Identities=16%  Similarity=0.163  Sum_probs=59.6

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 005339          373 MESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMER----EVELEHRAAEASMALARIQRIADERT---  445 (701)
Q Consensus       373 ~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~R----e~eLEee~aeLseALaelQrkLeEe~---  445 (701)
                      ++.++-..+-+.++ +.-++...+.++..++.+.+.    +..+..+    -.-++.++-.+..-.+.++..|-|++   
T Consensus       272 m~qlk~kns~L~~E-lSqkeelVk~~qeeLd~lkqt----~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~  346 (1265)
T KOG0976|consen  272 MRQLKAKNSVLGDE-LSQKEELVKELQEELDTLKQT----RTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKA  346 (1265)
T ss_pred             HHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHH----HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333333334555 555666666666665554432    2111111    11123333334444445555555555   


Q ss_pred             ----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339          446 ----AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (701)
Q Consensus       446 ----aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q  480 (701)
                          .+..+|+++..|+..+...+++.+...+.++.++.
T Consensus       347 egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~  385 (1265)
T KOG0976|consen  347 EGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLL  385 (1265)
T ss_pred             cchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence                45579999999999999999999988888888775

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.0046  Score=72.45  Aligned_cols=146  Identities=15%  Similarity=0.204  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHH---
Q 005339          419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQA---  495 (701)
Q Consensus       419 Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~---  495 (701)
                      ++..|.....+|+.-|....-.+.-.+.+++++..++..+-.+..+++++|+++...+-++-......-.++-+...   
T Consensus       445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~  524 (1118)
T KOG1029|consen  445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHK  524 (1118)
T ss_pred             HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence            33444444445555555555556666666677777777776777777777766666555543211111111111111   


Q ss_pred             ----HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 005339          496 ----WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS-E  570 (701)
Q Consensus       496 ----lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~-E  570 (701)
                          .+.+|+.++..+..++..   +++.+..|.++...-..+        ..-+..++.+|++.+..+|.+.+.+-. |
T Consensus       525 ~~~~~~s~L~aa~~~ke~irq~---ikdqldelskE~esk~~e--------idi~n~qlkelk~~~~~q~lake~~yk~e  593 (1118)
T KOG1029|consen  525 ETTQRKSELEAARRKKELIRQA---IKDQLDELSKETESKLNE--------IDIFNNQLKELKEDVNSQQLAKEELYKNE  593 (1118)
T ss_pred             CcchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                234454444443333332   223333333333221111        244567888888888888877777665 5


Q ss_pred             HHHHH
Q 005339          571 KAAAE  575 (701)
Q Consensus       571 r~sL~  575 (701)
                      +.-+.
T Consensus       594 ~d~~k  598 (1118)
T KOG1029|consen  594 RDKLK  598 (1118)
T ss_pred             HHHHH
Confidence            55554

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.23  E-value=0.033  Score=67.30  Aligned_cols=264  Identities=18%  Similarity=0.201  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339          308 SYEARIKQLEQELSVYKSEVTKVES---NLAEAL--AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (701)
Q Consensus       308 ~Le~rl~~LQaeL~~EQ~~l~q~es---~~~eaL--sak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (701)
                      .+.+|+..|...-...+++...++.   .+..+.  .+.+.+|=.|...+..|..+......+++++..|+..++=.-..
T Consensus       261 fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eq  340 (1195)
T KOG4643|consen  261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQ  340 (1195)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3555677777666666666655554   222222  34556666777777777777777788888888886665433222


Q ss_pred             H----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 005339          383 T----------------ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEH----------RAAEASMALAR  436 (701)
Q Consensus       383 ~----------------ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEe----------e~aeLseALae  436 (701)
                      +                +..-++.....|.+ -..+..+...|+-|..=-+.+..+.|+          +..-|+.-..+
T Consensus       341 L~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~  419 (1195)
T KOG4643|consen  341 LDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEI  419 (1195)
T ss_pred             hhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHH
Confidence            1                11212222233433 235666666666654433333333332          22333444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHH-HHHHHHHHHHHHHhHHHHHHhhh
Q 005339          437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQ-MQAWQDEVERARQGQRDAENKLS  515 (701)
Q Consensus       437 lQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~q-Lk~lkeEL~~lRq~qr~le~kL~  515 (701)
                      ++..+.+......+|+.-..+|-.+.+.+.++......-+.+.+ ...++-.+... ..-+..+.+.++.+...+-..|.
T Consensus       420 Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~-~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~  498 (1195)
T KOG4643|consen  420 LEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQS-LENEELDQLLSLQDQLEAETEELLNQIKNLNKSLN  498 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444445554444555555555555544443333331 11111111110 11133344444444444544555


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          516 SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE  581 (701)
Q Consensus       516 slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~  581 (701)
                      ....++.++-+....++.|+        .....++..+...|.+....+-.++.|++.|.-|+..+
T Consensus       499 ~r~~elsrl~a~~~elkeQ~--------kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L  556 (1195)
T KOG4643|consen  499 NRDLELSRLHALKNELKEQY--------KTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL  556 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            55555555555555555544        12222333334444444444444444444444444433

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=0.022  Score=69.73  Aligned_cols=63  Identities=17%  Similarity=0.264  Sum_probs=36.0

Q ss_pred             HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE  575 (701)
Q Consensus       498 eEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~  575 (701)
                      .+|..+...+..+.+++.+.+.++.++++++..++               .+++.+++++++.-..+.........|.
T Consensus       542 ~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~---------------~~~~~~rqrveE~ks~~~~~~s~~kVl~  604 (1293)
T KOG0996|consen  542 TELDDLKEELPSLKQELKEKEKELPKLRKEERNLK---------------SQLNKLRQRVEEAKSSLSSSRSRNKVLD  604 (1293)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            33444444444444555566777777777664433               3556777777776666666555554443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.21  E-value=0.014  Score=62.21  Aligned_cols=84  Identities=17%  Similarity=0.262  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhh---cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEH---YSREEHMELEKRYRELTDLLYYKQTQLETMAS  569 (701)
Q Consensus       493 Lk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~---~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~  569 (701)
                      +...+.|+..+|.....+...|.++......|...+..+...+..   -+...-..++..+..|+..+.......+.|..
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~  290 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD  290 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666666666666666666666665554433300   01112345555555555555555555555555


Q ss_pred             HHHHHHH
Q 005339          570 EKAAAEF  576 (701)
Q Consensus       570 Er~sL~~  576 (701)
                      -+-+|..
T Consensus       291 ~K~~Ld~  297 (312)
T PF00038_consen  291 VKLALDA  297 (312)
T ss_dssp             HHHHHHH
T ss_pred             HHHhHHH
Confidence            4444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.17  E-value=0.0019  Score=76.67  Aligned_cols=57  Identities=16%  Similarity=0.215  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339          330 VESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (701)
Q Consensus       330 ~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (701)
                      .+.+++.+++...+--..+...|..+..+...+..++..+...+++=++.+..+|++
T Consensus       440 ~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr  496 (697)
T PF09726_consen  440 SEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR  496 (697)
T ss_pred             hHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455554444444445666666666666666666666666665544444444444

; GO: 0016021 integral to membrane

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.17  E-value=0.015  Score=69.17  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=24.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005339          361 LSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE  399 (701)
Q Consensus       361 ~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq  399 (701)
                      .+|.|..+++.|.++|..++-.++.+ +..++.++..++
T Consensus       542 ~~r~r~~~lE~E~~~lr~elk~kee~-~~~~e~~~~~lr  579 (697)
T PF09726_consen  542 SCRQRRRQLESELKKLRRELKQKEEQ-IRELESELQELR  579 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            46667777777777777777766666 666666654433

; GO: 0016021 integral to membrane

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.13  E-value=0.058  Score=69.13  Aligned_cols=35  Identities=20%  Similarity=0.428  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Q 005339          493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE  527 (701)
Q Consensus       493 Lk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e  527 (701)
                      +.++.++.....+....++.++..+...+.++...
T Consensus       567 ~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~  601 (1486)
T PRK04863        567 LESLSESVSEARERRMALRQQLEQLQARIQRLAAR  601 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455555555555555555666666666666665

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.09  E-value=0.017  Score=66.46  Aligned_cols=279  Identities=19%  Similarity=0.246  Sum_probs=160.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005339          280 GLSSRLQEYKSENAQLEELLVAERELSRSYEAR--------IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS  351 (701)
Q Consensus       280 RLrk~~~elksr~aqLEell~el~ek~~~Le~r--------l~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~r  351 (701)
                      -|-.++.-|--+++.||..++.|..-...|+..        ..--+.++...+..+...           ...+..++..
T Consensus        46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~-----------~~~ra~~e~e  114 (546)
T KOG0977|consen   46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDET-----------ARERAKLEIE  114 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHH-----------HHHHHHHHHH
Confidence            344455555556666666666555555444441        112233333322222222           2234466777


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEAS  431 (701)
Q Consensus       352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLs  431 (701)
                      +..|..++..++.++++.+........++.+.... +..++.+++.++.+...           ...-+..|-.++.-+-
T Consensus       115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~-l~~leAe~~~~krr~~~-----------le~e~~~Lk~en~rl~  182 (546)
T KOG0977|consen  115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSR-LSELEAEINTLKRRIKA-----------LEDELKRLKAENSRLR  182 (546)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-hhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHhhhhH
Confidence            88888888888888888888888888777777777 77777777766655432           2224455566677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHhcc-cCChHH-HHH-HHHHHHHHHHHH---
Q 005339          432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQ----QELQDMEARLKRGQ-KKSPEE-ANQ-AIQMQAWQDEVE---  501 (701)
Q Consensus       432 eALaelQrkLeEe~aea~eLeqQls~LE~ElkqLk----QeLq~lE~e~~r~q-ek~~~e-a~q-~~qLk~lkeEL~---  501 (701)
                      ..|..+.+.++.+..--.++.-+++.|..++.-++    ++|......+.+-- ...... .++ ...|+.+..+.+   
T Consensus       183 ~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~  262 (546)
T KOG0977|consen  183 EELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAIS  262 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888888666666667777766666665    45544444444433 111111 000 011222222221   


Q ss_pred             -HHHHhHHHH-HHhhhhH--------------HHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHH---------
Q 005339          502 -RARQGQRDA-ENKLSSL--------------EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL---------  556 (701)
Q Consensus       502 -~lRq~qr~l-e~kL~sl--------------E~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~---------  556 (701)
                       +-|+..+.. ..+|...              .+++..+|..+..|+-++.... .....|+++|..|.-+         
T Consensus       263 ~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE-~~n~~L~~~I~dL~~ql~e~~r~~e  341 (546)
T KOG0977|consen  263 RQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELE-SRNSALEKRIEDLEYQLDEDQRSFE  341 (546)
T ss_pred             HHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccc-ccChhHHHHHHHHHhhhhhhhhhhh
Confidence             111111111 2333323              3566666666666665552221 2356777888877766         


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          557 --LYYKQTQLETMASEKAAAEFQLEKEM  582 (701)
Q Consensus       557 --L~eKQ~qlE~L~~Er~sL~~qLE~~~  582 (701)
                        |..|.+.+..|..|...|..+|+.+.
T Consensus       342 ~~L~~kd~~i~~mReec~~l~~Elq~Ll  369 (546)
T KOG0977|consen  342 QALNDKDAEIAKMREECQQLSVELQKLL  369 (546)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence              55677888889999999998888875

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.06  E-value=0.053  Score=68.39  Aligned_cols=26  Identities=12%  Similarity=0.095  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          559 YKQTQLETMASEKAAAEFQLEKEMNR  584 (701)
Q Consensus       559 eKQ~qlE~L~~Er~sL~~qLE~~~~~  584 (701)
                      ..+.++..+..++..++.++..+...
T Consensus       508 ~a~~~l~~~~~~~~~~~~~~~~l~~~  533 (1201)
T PF12128_consen  508 QAEEELRQARRELEELRAQIAELQRQ  533 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444444444444444444433

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.96  E-value=0.11  Score=63.77  Aligned_cols=46  Identities=24%  Similarity=0.301  Sum_probs=33.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~  589 (701)
                      ..++.-|..+.+++.++...+..+..+-..+..+|-.+..++.+..
T Consensus       545 ~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k  590 (1293)
T KOG0996|consen  545 DDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK  590 (1293)
T ss_pred             HHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666777777777888888888887777777777766665554

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.93  E-value=0.088  Score=61.59  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE  581 (701)
Q Consensus       547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~  581 (701)
                      ..|...+.+++..-|..++.|..+.+.|...+.+.
T Consensus       724 ~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~  758 (961)
T KOG4673|consen  724 RNRAAENRQEYLAAQEEADTLEGRANQLEVEIREL  758 (961)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666666666666665555443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.92  E-value=0.047  Score=58.19  Aligned_cols=40  Identities=25%  Similarity=0.486  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Q 005339          496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA  535 (701)
Q Consensus       496 lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~ql  535 (701)
                      ...++...+.....+...+.++..++..|+.....|.+++
T Consensus       207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l  246 (312)
T PF00038_consen  207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL  246 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence            3455666777777777777777777777777766666554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.043  Score=64.73  Aligned_cols=165  Identities=11%  Similarity=0.162  Sum_probs=99.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARI  437 (701)
Q Consensus       358 el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALael  437 (701)
                      ++.-.+.|..++.+++.+=++.+-- .+..+..|..+|++|...+.+=..           |+-+..-.....-+.+..+
T Consensus       410 qlewErar~qem~~Qk~reqe~iv~-~nak~~ql~~eletLn~k~qqls~-----------kl~Dvr~~~tt~kt~ie~~  477 (1118)
T KOG1029|consen  410 QLEWERARRQEMLNQKNREQEWIVY-LNAKKKQLQQELETLNFKLQQLSG-----------KLQDVRVDITTQKTEIEEV  477 (1118)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh-----------hhhhheeccchHHHHHHHh
Confidence            3555667777777776665554443 333366667777776655432111           2222222222223445556


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH---HHHH-HHHHHhHHHHHHh
Q 005339          438 QRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAW---QDEV-ERARQGQRDAENK  513 (701)
Q Consensus       438 QrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~l---keEL-~~lRq~qr~le~k  513 (701)
                      .+..+-.+.+..+|..++..+..-+-.|-.+-+.++.++.+.+....+...+.++|.+.   ++.| ++++.+..+++..
T Consensus       478 ~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE  557 (1118)
T KOG1029|consen  478 TKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKE  557 (1118)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666667777788888877777777777777778877777765555554445555553   2222 4555666666666


Q ss_pred             hhhHHHHHHHHHHHHHHhhhh
Q 005339          514 LSSLEAEVQKMRVEMAAMKRD  534 (701)
Q Consensus       514 L~slE~elqkLr~e~~~Lk~q  534 (701)
                      ..|.-.++.-+.+++++|+..
T Consensus       558 ~esk~~eidi~n~qlkelk~~  578 (1118)
T KOG1029|consen  558 TESKLNEIDIFNNQLKELKED  578 (1118)
T ss_pred             HHHHHHhhhhHHHHHHHHHHH
Confidence            666677777777777777753

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.88  E-value=0.091  Score=61.93  Aligned_cols=58  Identities=17%  Similarity=0.107  Sum_probs=37.0

Q ss_pred             ChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339          246 PTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAER  303 (701)
Q Consensus       246 ~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~  303 (701)
                      +.+++..-|+....|+.++-.++.|-.+|......|++.-.....++..||..|..++
T Consensus         6 l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk   63 (617)
T PF15070_consen    6 LKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELK   63 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666666666666666666666666666666666666666555544

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=97.86  E-value=0.019  Score=66.06  Aligned_cols=139  Identities=19%  Similarity=0.227  Sum_probs=109.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL---TETRMIQALREELASVERRAEEERAAHNATKMAAM  417 (701)
Q Consensus       341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~---~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~  417 (701)
                      ...+...|..++..+.+++..++..+++++.+..++......   +..+...+|...|.-++.++..+...+..+...++
T Consensus       107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl  186 (511)
T PF09787_consen  107 LSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFL  186 (511)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence            344555667777777778888888888886665555544443   23333588888899999999999888888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339          418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (701)
Q Consensus       418 ~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q  480 (701)
                      .|..+++.....|.+... ....+.....+..++..++.++.......+++|.+|+....+..
T Consensus       187 ~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iL  248 (511)
T PF09787_consen  187 KRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRIL  248 (511)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            999999988899999998 44578888899999999999999999999999999996655543

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.85  E-value=0.12  Score=60.56  Aligned_cols=49  Identities=16%  Similarity=0.287  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 005339          435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS  483 (701)
Q Consensus       435 aelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~  483 (701)
                      ..+++.+..+++++.+.++++..+..++++++.+...++.++++.+.+.
T Consensus       714 ~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~  762 (961)
T KOG4673|consen  714 GQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH  762 (961)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888899999999999999998888888888888888777776543

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.81  E-value=0.13  Score=59.63  Aligned_cols=141  Identities=18%  Similarity=0.275  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhH
Q 005339          428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQ  507 (701)
Q Consensus       428 aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~q  507 (701)
                      ..+...+..+...|++.+..+......+..|......|+.+|...+..+.+++++......   .+..++.+|...+..+
T Consensus       277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~---~v~~L~~eL~~~r~eL  353 (522)
T PF05701_consen  277 SELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASS---EVSSLEAELNKTRSEL  353 (522)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHhhHHHHHHHHHHHH
Confidence            3334455566666666666665555555556666666666666666666666543322222   2334555555555444


Q ss_pred             HHHH-------HhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          508 RDAE-------NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK  580 (701)
Q Consensus       508 r~le-------~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~  580 (701)
                      ..+.       ..+..+-..++.+..+....               +.-.....+++......++.......++..+|+.
T Consensus       354 ea~~~~e~~~k~~~~~l~~~Lqql~~Eae~A---------------k~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~a  418 (522)
T PF05701_consen  354 EAAKAEEEKAKEAMSELPKALQQLSSEAEEA---------------KKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEA  418 (522)
T ss_pred             HHHHhhhcchhhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3221       22233444444444444332               2333444555555555555555666666666655


Q ss_pred             HHHHHH
Q 005339          581 EMNRLQ  586 (701)
Q Consensus       581 ~~~~~~  586 (701)
                      +...+.
T Consensus       419 a~ke~e  424 (522)
T PF05701_consen  419 ALKEAE  424 (522)
T ss_pred             HHHHHH
Confidence            554433

Several sequences in this family are described as being myosin heavy chain-like.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.79  E-value=0.0061  Score=59.09  Aligned_cols=139  Identities=20%  Similarity=0.254  Sum_probs=116.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMER  419 (701)
Q Consensus       340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~R  419 (701)
                      ++..+..+...+...++.+++.+..+....+.++..|..++..++.+ +..++..|..++..++.-. .+...-..+..|
T Consensus         4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~e-ld~~~~~l~~~k~~lee~~-~~~~~~E~l~rr   81 (143)
T PF12718_consen    4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEE-LDKLEEQLKEAKEKLEESE-KRKSNAEQLNRR   81 (143)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHH-HHHHhHHHHHhh
Confidence            45566667778888888888888888888888888888888888888 8888888888888876542 222333466778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339          420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (701)
Q Consensus       420 e~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q  480 (701)
                      ..-||++.......|.....++.+.-.++..+++++..|+.....+-.+++.+..++...+
T Consensus        82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k  142 (143)
T PF12718_consen   82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEAK  142 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence            8889999999999999999999999999999999999999999999999999988887654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.78  E-value=0.1  Score=63.37  Aligned_cols=32  Identities=16%  Similarity=0.206  Sum_probs=19.0

Q ss_pred             HHHHHHhHHhhhhHhHhHhhhcchhHHHHHHH
Q 005339          630 QLQKAAKLLDSGAVRATRFLWRYPIARIILLF  661 (701)
Q Consensus       630 rvk~Aa~~lDs~sir~g~fLRRyP~aRl~~l~  661 (701)
                      .++..+..||...-..-..=|+.---+++-||
T Consensus      1012 kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IF 1043 (1174)
T KOG0933|consen 1012 KIKKTIEKLDEKKREELNKAWEKVNKDFGSIF 1043 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            56677777886665555555555555554444

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.72  E-value=0.22  Score=59.88  Aligned_cols=34  Identities=12%  Similarity=0.215  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339          349 VSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (701)
Q Consensus       349 e~rl~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (701)
                      ++|.++|+.++..++.|+++++.+++=|+.+...
T Consensus       324 EERaesLQ~eve~lkEr~deletdlEILKaEmee  357 (1243)
T KOG0971|consen  324 EERAESLQQEVEALKERVDELETDLEILKAEMEE  357 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3466677777777777777777777766666665

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.67  E-value=0.021  Score=65.30  Aligned_cols=38  Identities=16%  Similarity=0.176  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339          345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (701)
Q Consensus       345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (701)
                      +.+++..+..+..++..++..+..++.++..+...+.+
T Consensus       215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~  252 (562)
T PHA02562        215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIED  252 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            34444444444444444444444444444444433333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.65  E-value=0.3  Score=59.43  Aligned_cols=63  Identities=14%  Similarity=0.133  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQK  454 (701)
Q Consensus       388 lqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQ  454 (701)
                      ..+|..+...++.++.+....    ..+.....+.|..++..+.......++.+.....+...+.+-
T Consensus       410 ~KnLs~k~e~Leeri~ql~qq----~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~  472 (1195)
T KOG4643|consen  410 HKNLSKKHEILEERINQLLQQ----LAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQL  472 (1195)
T ss_pred             hHhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            444555556666665554332    345555777777788778887777777777775444444443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.60  E-value=0.18  Score=61.92  Aligned_cols=41  Identities=15%  Similarity=0.174  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  585 (701)
Q Consensus       545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~  585 (701)
                      .|...++.+++.+...+.....+..++..+...++--...+
T Consensus       419 ~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l  459 (1074)
T KOG0250|consen  419 SLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEEL  459 (1074)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666666666666666666666666666544333

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.55  E-value=0.29  Score=56.60  Aligned_cols=86  Identities=13%  Similarity=0.157  Sum_probs=42.1

Q ss_pred             CChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339          245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (701)
Q Consensus       245 k~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ  324 (701)
                      .+..++++++++...+. +.+.+..++.-|.+..++|+.....++.-+.+++.....+--+...|..++..-+.++...|
T Consensus       236 ~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq  314 (581)
T KOG0995|consen  236 EIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQ  314 (581)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666665 55555555555666666665555555555555555333322233333334444444444444


Q ss_pred             HHHHHHH
Q 005339          325 SEVTKVE  331 (701)
Q Consensus       325 ~~l~q~e  331 (701)
                      .....++
T Consensus       315 ~~~d~Lk  321 (581)
T KOG0995|consen  315 KENDELK  321 (581)
T ss_pred             HHHHHHH
Confidence            3333333

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.12  Score=59.37  Aligned_cols=194  Identities=24%  Similarity=0.253  Sum_probs=119.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          372 NMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL  451 (701)
Q Consensus       372 E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eL  451 (701)
                      ++..|+..+..++.+ ..+.+-+|..+++++++=...|+.+-..-..|+..|-                 ++--++-...
T Consensus        44 eK~~Lkqq~eEleae-yd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLL-----------------qESaakE~~y  105 (772)
T KOG0999|consen   44 EKEDLKQQLEELEAE-YDLARTELDQTKEALGQYRSQHKKVARDGEEREESLL-----------------QESAAKEEYY  105 (772)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHH-----------------HHHHHhHHHH
Confidence            344555555555555 6667777888888888777777777555555544442                 2333344566


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHH--H-HH-HHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Q 005339          452 EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN--Q-AI-QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE  527 (701)
Q Consensus       452 eqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~--q-~~-qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e  527 (701)
                      -.++-.|+.++++++++|.....+.+++.........  + ++ +-..++.||...+-.-.-+-+..+.+|++.=-|.+.
T Consensus       106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq  185 (772)
T KOG0999|consen  106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ  185 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            6778888889999999998888888887643332211  1 11 122245555533311111223446678888888888


Q ss_pred             HHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          528 MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  588 (701)
Q Consensus       528 ~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~  588 (701)
                      +..|+..-     +.---++--|+.|.++..-...+++....=+.--..|||-++-.+..+
T Consensus       186 Vs~LR~sQ-----VEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~E  241 (772)
T KOG0999|consen  186 VSNLRQSQ-----VEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQE  241 (772)
T ss_pred             HHHHhhhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            87777421     111334556778888888888888887777777777777776555544

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.49  E-value=0.13  Score=52.31  Aligned_cols=102  Identities=21%  Similarity=0.212  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASM  432 (701)
Q Consensus       353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLse  432 (701)
                      .+++.++..+|.-+..+++++.+|+...-.++++ .++|..++.+++..-..=...+.-++.    +..+|-..+..|-.
T Consensus        63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE-~q~L~~~i~~Lqeen~kl~~e~~~lk~----~~~eL~~~~~~Lq~  137 (193)
T PF14662_consen   63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKE-QQSLVAEIETLQEENGKLLAERDGLKK----RSKELATEKATLQR  137 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHhhhhHHH----HHHHHHHhhHHHHH
Confidence            4456677777777777888888888777777777 777887777777665543333333322    44444444433333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005339          433 ALARIQRIADERTAKAGELEQKVAMLE  459 (701)
Q Consensus       433 ALaelQrkLeEe~aea~eLeqQls~LE  459 (701)
                      -+..+..-+...-+.+.+-..++..+.
T Consensus       138 Ql~~~e~l~~~~da~l~e~t~~i~eL~  164 (193)
T PF14662_consen  138 QLCEFESLICQRDAILSERTQQIEELK  164 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            333444433433344444444444443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.47  E-value=0.52  Score=57.57  Aligned_cols=111  Identities=18%  Similarity=0.271  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 005339          290 SENAQLEELLVA---ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNL  366 (701)
Q Consensus       290 sr~aqLEell~e---l~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rl  366 (701)
                      +.++++|..|..   ++.+++.|.+.+.-...+|......+.+-+.  .    ..-+.+..+..++..++++++.....+
T Consensus       691 ~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~--~----~~~~~~~~~~e~v~e~~~~Ike~~~~~  764 (1174)
T KOG0933|consen  691 KELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEF--H----KLLDDLKELLEEVEESEQQIKEKERAL  764 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH--h----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444432   3445666666666666665554443333222  1    112233344455555555555555555


Q ss_pred             HHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          367 ASLQMNMESIMRNREL----TETRMIQALREELASVERRAEEERA  407 (701)
Q Consensus       367 eele~E~~rl~e~l~~----~ekeilqSLE~eLkslq~~le~E~~  407 (701)
                      -+.+.....+-....+    .+.+ +..++++|+.+.++++....
T Consensus       765 k~~~~~i~~lE~~~~d~~~~re~r-lkdl~keik~~k~~~e~~~~  808 (1174)
T KOG0933|consen  765 KKCEDKISTLEKKMKDAKANRERR-LKDLEKEIKTAKQRAEESSK  808 (1174)
T ss_pred             HHHHHHHHHHHHHHhHhhhhhHhH-HHHHHHHHHHHHHHHHHHHH
Confidence            5555554444333333    2445 78888888888888876544

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.45  E-value=0.49  Score=58.29  Aligned_cols=36  Identities=28%  Similarity=0.315  Sum_probs=24.6

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005339          334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL  369 (701)
Q Consensus       334 ~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleel  369 (701)
                      +.+.+....+.|..+++.+..++.++++.+.++..+
T Consensus       219 ~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~  254 (1074)
T KOG0250|consen  219 IMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNL  254 (1074)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            444555566777777777777777777777666643

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.42  E-value=0.49  Score=55.97  Aligned_cols=135  Identities=23%  Similarity=0.274  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE  331 (701)
Q Consensus       252 QLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~e  331 (701)
                      ||-+....|..|-+.          .+..|+..-.-|+-+++++-+.++.+.+.-.....++..|+..|...+..+....
T Consensus         1 ql~e~l~qlq~Erd~----------ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~   70 (617)
T PF15070_consen    1 QLMESLKQLQAERDQ----------YAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP   70 (617)
T ss_pred             ChHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            567778888888775          6777888877888888888888887777777777788888888877665444322


Q ss_pred             HHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005339          332 SNLAEALAAKNSEI-ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER  400 (701)
Q Consensus       332 s~~~eaLsak~~ei-e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~  400 (701)
                      .   -.-.+.-++- ..|+.++..|..++..+..++.....++..+..-....+.+ +..++..|..++.
T Consensus        71 ~---~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEer-L~ELE~~le~~~e  136 (617)
T PF15070_consen   71 P---PEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEER-LAELEEELERLQE  136 (617)
T ss_pred             C---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            1   0000011111 24555555555555555555555444444442222222333 5555544444443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.41  E-value=0.66  Score=57.32  Aligned_cols=38  Identities=24%  Similarity=0.308  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  585 (701)
Q Consensus       548 ~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~  585 (701)
                      .+|..|.-....++.+|+...++..-|..+++..+.-.
T Consensus      1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            46777777788888888888888888888888766443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.33  E-value=4.9e-05  Score=90.18  Aligned_cols=14  Identities=21%  Similarity=0.221  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHH
Q 005339          417 MEREVELEHRAAEA  430 (701)
Q Consensus       417 ~~Re~eLEee~aeL  430 (701)
                      +.+..+||.++..+
T Consensus       256 l~~i~~LE~en~~l  269 (722)
T PF05557_consen  256 LAHIRELEKENRRL  269 (722)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHHHHHH
Confidence            44566666665333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.31  E-value=5.3e-05  Score=91.53  Aligned_cols=154  Identities=23%  Similarity=0.251  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChH-------HHHHH-
Q 005339          419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE-------EANQA-  490 (701)
Q Consensus       419 Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~-------ea~q~-  490 (701)
                      |...|++..-.+..-|.+++..+++....+..|++...-|..++..++.+|+.....+..+.++...       ....+ 
T Consensus       315 ~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~  394 (859)
T PF01576_consen  315 RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVE  394 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3344444444445555555555555555555555555555555555555554444433333222111       00000 


Q ss_pred             ----------HHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 005339          491 ----------IQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK  560 (701)
Q Consensus       491 ----------~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eK  560 (701)
                                ...+.+..++-.++.....+...+..++.+...|..++..+..++.... ..-.+|++..+.|-.++.+-
T Consensus       395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~-k~v~eLek~kr~LE~e~~El  473 (859)
T PF01576_consen  395 ELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAG-KSVHELEKAKRRLEQEKEEL  473 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc-cchHHHHHHHHHHHHHHHHH
Confidence                      0122344445555555555555555566666666666655554441110 11245555555555555555


Q ss_pred             HHHHHHHHHHHHH
Q 005339          561 QTQLETMASEKAA  573 (701)
Q Consensus       561 Q~qlE~L~~Er~s  573 (701)
                      +.+++.+.+.+..
T Consensus       474 ~~~leE~E~~l~~  486 (859)
T PF01576_consen  474 QEQLEEAEDALEA  486 (859)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555544433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.29  E-value=0.59  Score=54.21  Aligned_cols=103  Identities=15%  Similarity=0.200  Sum_probs=48.3

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005339          275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA---RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS  351 (701)
Q Consensus       275 a~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~---rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~r  351 (701)
                      .+++.||++-.+.....++.|+..++++-++....+.   ++..|...-++.|+.....+. +..+   +..-.+.+.+.
T Consensus       220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~-y~~~---~~~k~~~~~~~  295 (581)
T KOG0995|consen  220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQA-YVSQ---MKSKKQHMEKK  295 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHH-HHHH---HHhhhHHHHHH
Confidence            3456777777776666666666666666665543333   344444444444444443333 1111   22222234444


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005339          352 IDALKKQAALSEGNLASLQMNMESIMRNRE  381 (701)
Q Consensus       352 l~~Le~el~~~K~rleele~E~~rl~e~l~  381 (701)
                      +..+..++..-...++.++.+++.|+-.+.
T Consensus       296 l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  296 LEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444433

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.28  E-value=0.68  Score=54.62  Aligned_cols=228  Identities=21%  Similarity=0.227  Sum_probs=135.6

Q ss_pred             hHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHH----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339          252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSR----------LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS  321 (701)
Q Consensus       252 QLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~----------~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~  321 (701)
                      +++.+...++.++.   .|+.+.+.+-.++.+.          +++++..+++|++.-..+.+..+........|.++|.
T Consensus       223 k~~~leeey~~E~n---~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~  299 (786)
T PF05483_consen  223 KFEDLEEEYKKEVN---DKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELE  299 (786)
T ss_pred             HHHHHHHHHHHHhh---hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence            34445555555543   4667777776666554          4566677888888777777776666665555666665


Q ss_pred             HHHHHHHHHH----------------------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339          322 VYKSEVTKVE----------------------------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM  373 (701)
Q Consensus       322 ~EQ~~l~q~e----------------------------s~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~  373 (701)
                      ..+.++....                            .++..+..+....+.+++..+..|+.-+.....|+.+.+.++
T Consensus       300 ~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~l  379 (786)
T PF05483_consen  300 DIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQL  379 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            5444443322                            123334444455556677778888888888888888888887


Q ss_pred             HHHHHHhhhHHHH------HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH--------------HHH--
Q 005339          374 ESIMRNRELTETR------MIQALREELASVERRAEEER------AAHNATKMAAMEREVE--------------LEH--  425 (701)
Q Consensus       374 ~rl~e~l~~~eke------ilqSLE~eLkslq~~le~E~------~aH~aTr~ea~~Re~e--------------LEe--  425 (701)
                      ..+.-++..+..+      -.+..+.+|..++.-++.-.      ........++..++.+              |+.  
T Consensus       380 k~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l  459 (786)
T PF05483_consen  380 KILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQL  459 (786)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            7777766653111      12333344555554444311      1000111111111111              111  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccC
Q 005339          426 -----RAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK  482 (701)
Q Consensus       426 -----e~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek  482 (701)
                           .+..|+..+..+-..+..+..+-.+|-..+..+..+-+++.|+..++-.++...+..
T Consensus       460 ~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qed  521 (786)
T PF05483_consen  460 TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQED  521 (786)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence                 135667777777778887777778888888888888888888888877777666543

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.23  E-value=0.72  Score=53.96  Aligned_cols=24  Identities=17%  Similarity=0.167  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          388 IQALREELASVERRAEEERAAHNA  411 (701)
Q Consensus       388 lqSLE~eLkslq~~le~E~~aH~a  411 (701)
                      +..+...|..+-..++.|..+++.
T Consensus       284 ~~~i~~~Id~Lyd~lekE~~A~~~  307 (569)
T PRK04778        284 NEEIQERIDQLYDILEREVKARKY  307 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555554333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.15  E-value=1  Score=54.14  Aligned_cols=78  Identities=19%  Similarity=0.203  Sum_probs=37.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHH
Q 005339          305 LSRSYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNL-------ASLQMNME  374 (701)
Q Consensus       305 k~~~Le~rl~~LQaeL~~EQ~~l~q~es---~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rl-------eele~E~~  374 (701)
                      +-..|..+|..||.+|...+..+...+.   .+.....-.....+.++..+..|..+++..|.|.       +++++|+-
T Consensus        28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi  107 (717)
T PF09730_consen   28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI  107 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3344444555555555554444444442   1222222234445555566666666666666554       34444454


Q ss_pred             HHHHHhhh
Q 005339          375 SIMRNREL  382 (701)
Q Consensus       375 rl~e~l~~  382 (701)
                      .|+..++-
T Consensus       108 slQKqvs~  115 (717)
T PF09730_consen  108 SLQKQVSV  115 (717)
T ss_pred             HHHHHHHH
Confidence            44444444

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK01156 chromosome segregation protein; Provisional

Probab=97.12  E-value=1.2  Score=54.48  Aligned_cols=12  Identities=17%  Similarity=0.246  Sum_probs=6.0

Q ss_pred             hHhHhhhcchhH
Q 005339          644 RATRFLWRYPIA  655 (701)
Q Consensus       644 r~g~fLRRyP~a  655 (701)
                      ..+.++.--|++
T Consensus       825 ~~~~lilDEpt~  836 (895)
T PRK01156        825 DKSLLIMDEPTA  836 (895)
T ss_pred             CCCeEEEeCCCC
Confidence            344455555553

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.04  E-value=0.00015  Score=87.84  Aligned_cols=42  Identities=21%  Similarity=0.305  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339          439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (701)
Q Consensus       439 rkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q  480 (701)
                      ..++.....+..|+++...++..+..++..+..+...+...+
T Consensus       363 ~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q  404 (859)
T PF01576_consen  363 SELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQ  404 (859)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444455555555555555555554444444444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.04  E-value=1.4  Score=53.88  Aligned_cols=55  Identities=20%  Similarity=0.231  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005339          342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS  397 (701)
Q Consensus       342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLks  397 (701)
                      +.++..|++.+..+-++-......+.++++++..+..++..++.. +..|..+..+
T Consensus       236 ~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~-l~~l~~ekeq  290 (1200)
T KOG0964|consen  236 NGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENK-LTNLREEKEQ  290 (1200)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH
Confidence            334444444444444444444444445555555544444444444 4444433333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.03  E-value=0.75  Score=51.91  Aligned_cols=50  Identities=22%  Similarity=0.299  Sum_probs=28.9

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005339          278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV  327 (701)
Q Consensus       278 ~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l  327 (701)
                      ..+|++.++.++..+.+++..+.+-......+..+|..+...|..++...
T Consensus        61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            55666666666666666666555555555555555555555555544443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.02  E-value=0.16  Score=49.36  Aligned_cols=126  Identities=21%  Similarity=0.277  Sum_probs=88.6

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005339          278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKK  357 (701)
Q Consensus       278 ~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~  357 (701)
                      ...++.....+.-++.++|.-+..++.+...|+..+..++..|...+..+......        ....+.|..++..|+.
T Consensus        16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~--------~~~~E~l~rriq~LEe   87 (143)
T PF12718_consen   16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR--------KSNAEQLNRRIQLLEE   87 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHhHHHHHhhHHHHHH
Confidence            33455566666666777777666666667766666666666666665555444432        2233478888999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNAT  412 (701)
Q Consensus       358 el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aT  412 (701)
                      ++.....++..+..-++.+--...+.+.. +..|+.+......+++.-...|..+
T Consensus        88 ele~ae~~L~e~~ekl~e~d~~ae~~eRk-v~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   88 ELEEAEKKLKETTEKLREADVKAEHFERK-VKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            99999999998888888888888888877 8888887777777777655554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK09039 hypothetical protein; Validated

Probab=97.02  E-value=0.21  Score=54.94  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=96.2

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005339          275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA  354 (701)
Q Consensus       275 a~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~  354 (701)
                      ...-.++++.+..+..+++.|=+++.-.+.+...|+.++..++.++...+..+..+++.+.    .+......++.++..
T Consensus        45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~----~~~~~~~~~~~~~~~  120 (343)
T PRK09039         45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA----ELAGAGAAAEGRAGE  120 (343)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhcchHHHHHHH
Confidence            3456677777788888888888888888888888999999999998887777777776444    344445678888888


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005339          355 LKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA  402 (701)
Q Consensus       355 Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l  402 (701)
                      +..++...+....+..-+...|...+..+..+ +.+++..|..++.+.
T Consensus       121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-la~le~~L~~ae~~~  167 (343)
T PRK09039        121 LAQELDSEKQVSARALAQVELLNQQIAALRRQ-LAALEAALDASEKRD  167 (343)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            88999999999999999999888888888777 777777777666554

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.99  E-value=0.58  Score=55.13  Aligned_cols=84  Identities=14%  Similarity=0.283  Sum_probs=53.1

Q ss_pred             HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 005339          498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLE-------TMASE  570 (701)
Q Consensus       498 eEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE-------~L~~E  570 (701)
                      .+|..+|+..+.+...+...++...+|..+++.+....      .-.-|=.||.+.+-.+.-=+..|.       .|..|
T Consensus       447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~------~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQke  520 (594)
T PF05667_consen  447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV------NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKE  520 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666677777778888888888887766543      134566788887766543334444       45556


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 005339          571 KAAAEFQLEKEMNRLQE  587 (701)
Q Consensus       571 r~sL~~qLE~~~~~~~~  587 (701)
                      .+++.-+|+|.=+-.|+
T Consensus       521 iN~l~gkL~RtF~v~dE  537 (594)
T PF05667_consen  521 INSLTGKLDRTFTVTDE  537 (594)
T ss_pred             HHHHHHHHHhHHHHHHH
Confidence            66666666665444443

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.99  E-value=0.47  Score=48.41  Aligned_cols=115  Identities=21%  Similarity=0.297  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005339          433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN  512 (701)
Q Consensus       433 ALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~  512 (701)
                      .+.++.-..++.-.+..+.-.++.+.+.+++..-.+.+.                                      .++
T Consensus        68 qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~--------------------------------------~Es  109 (205)
T KOG1003|consen   68 QLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEA--------------------------------------AES  109 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------------------------------HHH
Confidence            344444445555566666677777777665544322221                                      123


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ  586 (701)
Q Consensus       513 kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~  586 (701)
                      ++..++.++..+.+.++.+...-+.|+ +..-.|+..|+.|++.|-+-.+..+-+..-...|....+++.-++.
T Consensus       110 ~~~eLeEe~~~~~~nlk~l~~~ee~~~-q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~  182 (205)
T KOG1003|consen  110 QSEELEEDLRILDSNLKSLSAKEEKLE-QKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLE  182 (205)
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhH
Confidence            333344444444444444333323333 5568899999999999998888777777666666666666554443

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.83  E-value=1.6  Score=51.16  Aligned_cols=91  Identities=15%  Similarity=0.195  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHhHHHH
Q 005339          388 IQALREELASVERRAEEERAAHNATKMA---AMEREVELEHRAAEASMALARIQRIA--D-ERTAKAGELEQKVAMLEVE  461 (701)
Q Consensus       388 lqSLE~eLkslq~~le~E~~aH~aTr~e---a~~Re~eLEee~aeLseALaelQrkL--e-Ee~aea~eLeqQls~LE~E  461 (701)
                      +..+..+|..+=..++.|..+++.....   .......+...+..+..-+..+....  . .+...+..+.+++..++..
T Consensus       280 ~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~  359 (560)
T PF06160_consen  280 NEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKR  359 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            5555566666666666665554433221   11112222222222222222222211  1 2334445666666666666


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 005339          462 CATLQQELQDMEARLKR  478 (701)
Q Consensus       462 lkqLkQeLq~lE~e~~r  478 (701)
                      +..+.+.+..-..-+..
T Consensus       360 ~~~~~~~i~~~~~~yS~  376 (560)
T PF06160_consen  360 YEDLEERIEEQQVPYSE  376 (560)
T ss_pred             HHHHHHHHHcCCcCHHH
Confidence            55555555443333333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.82  E-value=2  Score=52.15  Aligned_cols=106  Identities=18%  Similarity=0.235  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL  423 (701)
Q Consensus       344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eL  423 (701)
                      .+++++......+.++..+|.++.++..+---+.++..+..++        +.+.+....                  ++
T Consensus       411 ~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQ--------le~~~~s~~------------------~~  464 (980)
T KOG0980|consen  411 LVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQ--------LESAEQSID------------------DV  464 (980)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHH------------------HH
Confidence            3567777778888888888888888888777666666665555        233222211                  44


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339          424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR  475 (701)
Q Consensus       424 Eee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e  475 (701)
                      ++++..|..-+.++++....--.+..+....++.|+.++..+..+++.++..
T Consensus       465 ~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~  516 (980)
T KOG0980|consen  465 EEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT  516 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555555555555555555555444433

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.78  E-value=2.3  Score=52.24  Aligned_cols=129  Identities=16%  Similarity=0.249  Sum_probs=65.2

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhH
Q 005339          271 EARLARVCAGLSSRLQEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEVTKVE---SNLAEALAAKNS  343 (701)
Q Consensus       271 e~qLa~~~~RLrk~~~elksr~aqLEell~el~ek----~~~Le~rl~~LQaeL~~EQ~~l~q~e---s~~~eaLsak~~  343 (701)
                      .-++..+--.+.+++.+|.....-|+.-...-.++    ...+...+...-.+|.+.-..+...-   ..+..++....+
T Consensus       186 ~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d  265 (1200)
T KOG0964|consen  186 REKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVED  265 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence            33444455555556666655555554421111111    22233333333333333322222211   234444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERA  407 (701)
Q Consensus       344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~  407 (701)
                      ++..+.       .++..++..+.-+-.+++++..+-+..-+. +..|+-+++.++...+....
T Consensus       266 ~~~~~~-------~~i~ele~~l~~l~~ekeq~~a~~t~~~k~-kt~lel~~kdlq~~i~~n~q  321 (1200)
T KOG0964|consen  266 ESEDLK-------CEIKELENKLTNLREEKEQLKARETKISKK-KTKLELKIKDLQDQITGNEQ  321 (1200)
T ss_pred             HHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHhhhhhh
Confidence            444444       455555566666666667766666665555 77788889999988766443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.76  E-value=1.8  Score=50.76  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE  587 (701)
Q Consensus       549 rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~  587 (701)
                      ++..+.......+..+..|..+-.....+|+.....+..
T Consensus       391 ~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~  429 (569)
T PRK04778        391 QLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE  429 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.74  E-value=0.0019  Score=76.80  Aligned_cols=36  Identities=25%  Similarity=0.247  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK  580 (701)
Q Consensus       545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~  580 (701)
                      .+..++..|..++..-+..+..|..++..|..+|+.
T Consensus       500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  500 SLSEELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667777777777777777777777777765

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.72  E-value=1.9  Score=50.53  Aligned_cols=39  Identities=10%  Similarity=0.121  Sum_probs=20.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  582 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~  582 (701)
                      +.+...+.++.+.|.+-......+.....+|...-..+.
T Consensus       375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar  413 (560)
T PF06160_consen  375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAR  413 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555665555555555555555555544444333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.54  Score=56.27  Aligned_cols=61  Identities=20%  Similarity=0.180  Sum_probs=45.3

Q ss_pred             CCChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005339          244 DPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERE  304 (701)
Q Consensus       244 ek~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~e  304 (701)
                      |+.-..+-.+-.+.+.|..+.+.++.+...|......|++..+...+..++|.+.+..++-
T Consensus       653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~  713 (970)
T KOG0946|consen  653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN  713 (970)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344456667777777788888888888888888888888888888888886665444

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.69  E-value=1.7  Score=55.94  Aligned_cols=42  Identities=21%  Similarity=0.145  Sum_probs=24.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  585 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~  585 (701)
                      .++..+|.++...|......+..+..+..++...+..+..+.
T Consensus       924 eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~  965 (1353)
T TIGR02680       924 DEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR  965 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666666666666666666655555554444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.62  E-value=1.8  Score=48.96  Aligned_cols=39  Identities=26%  Similarity=0.417  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339          284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV  322 (701)
Q Consensus       284 ~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~  322 (701)
                      ++....+.+++++..+...++....|+..|..++.++..
T Consensus        39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~   77 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS   77 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.53  E-value=3.6  Score=51.34  Aligned_cols=39  Identities=21%  Similarity=0.157  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  585 (701)
Q Consensus       547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~  585 (701)
                      ..+-..|.-+-..|-..|..|+.+...-..+|+...+.+
T Consensus      1695 ~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL 1733 (1758)
T KOG0994|consen 1695 RTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAEL 1733 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence            334444444445555555555555555555555443333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.51  E-value=0.78  Score=48.36  Aligned_cols=102  Identities=22%  Similarity=0.321  Sum_probs=52.7

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005339          276 RVCAGLSSRLQEYKSENAQLEELLVAEREL---SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI  352 (701)
Q Consensus       276 ~~~~RLrk~~~elksr~aqLEell~el~ek---~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl  352 (701)
                      ++..+.......+.+..+.+|.++..+..+   ...|++.+.+++.++...+.-....+..+...  +..       .++
T Consensus        21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v--~~~-------~e~   91 (239)
T COG1579          21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV--KDE-------REL   91 (239)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccH-------HHH
Confidence            355555556666666666666655544333   33344456666666555554444444433111  122       344


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339          353 DALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (701)
Q Consensus       353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (701)
                      ..|+.++...+.++..++.++..+++.+..+++.
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~  125 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKE  125 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555656666666555555555444

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.50  E-value=0.21  Score=52.54  Aligned_cols=83  Identities=22%  Similarity=0.366  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHH
Q 005339          445 TAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKM  524 (701)
Q Consensus       445 ~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkL  524 (701)
                      ..++.+++.+++.++.++..++.++...+..+...       .. .-++.++..|+..+.+....|+..|..+..++.++
T Consensus        51 ~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v-------~~-~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l  122 (239)
T COG1579          51 EIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV-------KD-ERELRALNIEIQIAKERINSLEDELAELMEEIEKL  122 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555554444444222       11 22566788888888888888888888888888888


Q ss_pred             HHHHHHhhhhh
Q 005339          525 RVEMAAMKRDA  535 (701)
Q Consensus       525 r~e~~~Lk~ql  535 (701)
                      +.++..++..+
T Consensus       123 ~~~i~~l~~~~  133 (239)
T COG1579         123 EKEIEDLKERL  133 (239)
T ss_pred             HHHHHHHHHHH
Confidence            88877766554

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.48  E-value=0.00069  Score=80.48  Aligned_cols=77  Identities=17%  Similarity=0.182  Sum_probs=0.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339          303 RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR  380 (701)
Q Consensus       303 ~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l  380 (701)
                      .+.+..|..++..|+.+|.....-..++.. +...+...+..+.+...+...+..++..++.++..++.+.+++...+
T Consensus       338 ee~N~~l~e~~~~LEeel~~~~~~~~qle~-~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~  414 (713)
T PF05622_consen  338 EEDNAVLLETKAMLEEELKKARALKSQLEE-YKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEER  414 (713)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555666666666554433333322 22222222222223333333444444444444444444444444333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK09039 hypothetical protein; Validated

Probab=96.48  E-value=1.9  Score=47.58  Aligned_cols=137  Identities=17%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 005339          434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENK  513 (701)
Q Consensus       434 LaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~k  513 (701)
                      ++.+-..+.-+..+...++..+..+...+..++.+-.+++..+............   ++..+..+|..++.       .
T Consensus        62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~---~~~~l~~~L~~~k~-------~  131 (343)
T PRK09039         62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEG---RAGELAQELDSEKQ-------V  131 (343)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHH---HHHHHHHHHHHHHH-------H
Confidence            3334444445555555555555555555555555444444433321110000011   12223333333322       2


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          514 LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  588 (701)
Q Consensus       514 L~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~  588 (701)
                      ....--++..|+.++..|+.|+        ..++..|..+.++..+.+.+++.|..+.+....+--.-+.+++++
T Consensus       132 ~se~~~~V~~L~~qI~aLr~Ql--------a~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~  198 (343)
T PRK09039        132 SARALAQVELLNQQIAALRRQL--------AALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSE  198 (343)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3334555666666666666554        445556666666666677777777666666654422223445443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=3.1  Score=49.82  Aligned_cols=60  Identities=15%  Similarity=0.244  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339          421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (701)
Q Consensus       421 ~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q  480 (701)
                      ..+..+...+..++..+.++..+....+..|..++...+..+++++....+...++....
T Consensus       541 ~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~  600 (698)
T KOG0978|consen  541 SKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK  600 (698)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445556667777777777777777777777777777777777777766666666554

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=96.39  E-value=2  Score=46.83  Aligned_cols=117  Identities=18%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             HHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          254 DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN  333 (701)
Q Consensus       254 ee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~  333 (701)
                      ..-|+.||.+.++...+-..|+.....|+...-.+.....+=|+-      .+..|-.+|..|..+-...--.|.+.+.-
T Consensus        33 ~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~------isN~LlKkl~~l~keKe~L~~~~e~EEE~  106 (310)
T PF09755_consen   33 QQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF------ISNTLLKKLQQLKKEKETLALKYEQEEEF  106 (310)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334888888888888888888888888887777666666555553      45666677777777777766666666653


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhhHHHH
Q 005339          334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN-MESIMRNRELTETR  386 (701)
Q Consensus       334 ~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E-~~rl~e~l~~~eke  386 (701)
                      +..          +|..++..+..+-..+...++.=++- ..+|+..+..++++
T Consensus       107 ltn----------~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e  150 (310)
T PF09755_consen  107 LTN----------DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKE  150 (310)
T ss_pred             HHH----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            332          45555555544444444444432222 44555554444444

>PLN03188 kinesin-12 family protein; Provisional

Probab=96.35  E-value=4.8  Score=50.88  Aligned_cols=142  Identities=20%  Similarity=0.208  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChH-HHHHHHHHHHHHHHHHHHHHh
Q 005339          428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE-EANQAIQMQAWQDEVERARQG  506 (701)
Q Consensus       428 aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~-ea~q~~qLk~lkeEL~~lRq~  506 (701)
                      ..|..||..|.|.+++    ..+|+++.-.|-.-.+..+.=+++.+..+.+.=  +++ +..+   +.+|..||..+|-.
T Consensus      1100 ~a~q~am~ghar~~e~----ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag--~kg~~~~f---~~alaae~s~l~~e 1170 (1320)
T PLN03188       1100 EAMQMAMEGHARMLEQ----YADLEEKHIQLLARHRRIQEGIDDVKKAAARAG--VRGAESKF---INALAAEISALKVE 1170 (1320)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccchHHH---HHHHHHHHHHHHHH
Confidence            3344444445444432    355555555555444555555555444443331  111 1111   23455566555443


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhhhh--cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          507 QRDAENKLSSLEAEVQKMRVEMAAMKRDAEH--YSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR  584 (701)
Q Consensus       507 qr~le~kL~slE~elqkLr~e~~~Lk~qle~--~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~  584 (701)
                                .|.|-..|+.+-+.||-||-.  --.+...+|=-||++--+-+.--|.+.-.++.|..-+-.|++++..+
T Consensus      1171 ----------reker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrk 1240 (1320)
T PLN03188       1171 ----------REKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRK 1240 (1320)
T ss_pred             ----------HHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      456666777777777766611  12234688889999999999999999999999999999999999988


Q ss_pred             HHHH
Q 005339          585 LQEV  588 (701)
Q Consensus       585 ~~~~  588 (701)
                      .+.+
T Consensus      1241 h~~e 1244 (1320)
T PLN03188       1241 HENE 1244 (1320)
T ss_pred             HHHH
Confidence            8655

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.34  E-value=1.5  Score=44.84  Aligned_cols=128  Identities=19%  Similarity=0.237  Sum_probs=61.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHH
Q 005339          332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM-------IQALREELASVERRAEE  404 (701)
Q Consensus       332 s~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekei-------lqSLE~eLkslq~~le~  404 (701)
                      +++-.-+...++++..|..++...+......+.++-+...++.++.+.+.++.+=.       -..|...|..++..++ 
T Consensus        57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~-  135 (194)
T PF15619_consen   57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQ-  135 (194)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH-
Confidence            34444445555666666666666666666666666655555555555554421100       0111222222222221 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339          405 ERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (701)
Q Consensus       405 E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE  473 (701)
                                +...+...|+...   .-+-....+.+..+..+..++...+..+..++..|++.|...+
T Consensus       136 ----------~~~~ki~~Lek~l---eL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe  191 (194)
T PF15619_consen  136 ----------EKEKKIQELEKQL---ELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE  191 (194)
T ss_pred             ----------HHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      1222233333322   2222345555566666666666666666666666666665433

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=96.27  E-value=3.8  Score=48.83  Aligned_cols=40  Identities=15%  Similarity=0.174  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          408 AHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAK  447 (701)
Q Consensus       408 aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~ae  447 (701)
                      .|+....++....++||++...-+.--+.++..|+...++
T Consensus       328 eh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AE  367 (739)
T PF07111_consen  328 EHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAE  367 (739)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3444444455556666665444444444455555444433

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.22  E-value=4  Score=48.55  Aligned_cols=45  Identities=22%  Similarity=0.257  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLA  335 (701)
Q Consensus       291 r~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~  335 (701)
                      +...||..+..+......+..++..++.++...+..+...+..+.
T Consensus       210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~  254 (650)
T TIGR03185       210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR  254 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444433444444444444455555555444444444444333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=96.22  E-value=3.9  Score=49.26  Aligned_cols=36  Identities=11%  Similarity=0.074  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (701)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (701)
                      ........++.++..++.++++++.++...+.+...
T Consensus       191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l  226 (754)
T TIGR01005       191 SNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL  226 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            445567778888888888888888888887776655

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.19  E-value=5.3  Score=49.64  Aligned_cols=37  Identities=11%  Similarity=0.232  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 005339          496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK  532 (701)
Q Consensus       496 lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk  532 (701)
                      ++..+..+-.....|...|.+++..+.++..++..+-
T Consensus       861 ~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL  897 (1141)
T KOG0018|consen  861 VKKILRRLVKELTKLDKEITSIESKIERKESERHNLL  897 (1141)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence            4444444444455566677778888888888865543

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.15  E-value=1.9  Score=44.13  Aligned_cols=77  Identities=21%  Similarity=0.290  Sum_probs=35.3

Q ss_pred             CChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339          245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (701)
Q Consensus       245 k~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ  324 (701)
                      |++.|+.++.+++..|..=.    -..-=|..+..|-.+++..+.-..+.|-.++       ......+..|...|...+
T Consensus        13 ki~~L~n~l~elq~~l~~l~----~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll-------~~h~eEvr~Lr~~LR~~q   81 (194)
T PF15619_consen   13 KIKELQNELAELQRKLQELR----KENKTLKQLQKRQEKALQKYEDTEAELPQLL-------QRHNEEVRVLRERLRKSQ   81 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            45556666666555544321    1122344455555555554444444444433       333344444444444444


Q ss_pred             HHHHHHHH
Q 005339          325 SEVTKVES  332 (701)
Q Consensus       325 ~~l~q~es  332 (701)
                      ......+.
T Consensus        82 ~~~r~~~~   89 (194)
T PF15619_consen   82 EQERELER   89 (194)
T ss_pred             HHHHHHHH
Confidence            44443333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.12  E-value=1.9  Score=44.00  Aligned_cols=124  Identities=19%  Similarity=0.192  Sum_probs=72.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005339          274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK---SEVTKVESNLAEALAAKNSEIETLVS  350 (701)
Q Consensus       274 La~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ---~~l~q~es~~~eaLsak~~eie~Le~  350 (701)
                      |.....||......++-.+...|+.+..+.+.+..|...+..+|+.|...+   +++..++    .-....+++..-|..
T Consensus        13 L~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk----~~~~~lEE~~~~L~a   88 (193)
T PF14662_consen   13 LQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLK----TLAKSLEEENRSLLA   88 (193)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            444455555555555666666666666666666666666666666555442   2222222    222233444445666


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005339          351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA  402 (701)
Q Consensus       351 rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l  402 (701)
                      ....++++...+-..+..+++++..+...+.-+.++ ...|-.+-.+|+..+
T Consensus        89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~-~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR-SKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH-HHHHHHhhHHHHHHH
Confidence            777777777778888888888888877777776666 444443444444433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.10  E-value=4.9  Score=48.50  Aligned_cols=326  Identities=18%  Similarity=0.215  Sum_probs=168.7

Q ss_pred             hhHHHHHHH---HHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005339          251 DQLDEAQGL---LKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV  327 (701)
Q Consensus       251 kQLee~n~~---LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l  327 (701)
                      .++.++...   +|.+++...+...+|......|++....+.....+|=+-+++.+.+-..|-..+..|+.+-...|-.+
T Consensus        34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqv  113 (717)
T PF09730_consen   34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQV  113 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            344444433   44456666666777777888888888777777777777777777776666667777777777777666


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHhhhH--HHHHHHHHHHHHHHH---
Q 005339          328 TKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM----RNRELT--ETRMIQALREELASV---  398 (701)
Q Consensus       328 ~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~----e~l~~~--ekeilqSLE~eLksl---  398 (701)
                      ..+++... .-..++=+|.-|++++.       -++..++++..=++=..    +-+..+  |.+.+.+|+++|...   
T Consensus       114 s~Lk~sQv-efE~~Khei~rl~Ee~~-------~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~~~~  185 (717)
T PF09730_consen  114 SVLKQSQV-EFEGLKHEIKRLEEEIE-------LLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQHLNI  185 (717)
T ss_pred             HHHHHhHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            66665222 11223334444444444       44444443332222111    111111  344466666665541   


Q ss_pred             ---------HHHH-----------------H-HHHHHH----------------------------------------HH
Q 005339          399 ---------ERRA-----------------E-EERAAH----------------------------------------NA  411 (701)
Q Consensus       399 ---------q~~l-----------------e-~E~~aH----------------------------------------~a  411 (701)
                               .-.+                 + .+...|                                        -.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfSEl~~~  265 (717)
T PF09730_consen  186 ESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFSELNLS  265 (717)
T ss_pred             cccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhhhcchH
Confidence                     1111                 0 001111                                        00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHhcccCChH----
Q 005339          412 TKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR--LKRGQKKSPE----  485 (701)
Q Consensus       412 Tr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e--~~r~qek~~~----  485 (701)
                      --..+...+..++.++..|...|.+.|+.|+.....+.+...++..|-..+..++.-....+..  ..........    
T Consensus       266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~  345 (717)
T PF09730_consen  266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGD  345 (717)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccc
Confidence            0011112233446677888888888888888888777777777777666555555411100000  0111100000    


Q ss_pred             ---------H------HHHHHHHHHHHHHHHHHHHhHHHHHHh----hhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHH
Q 005339          486 ---------E------ANQAIQMQAWQDEVERARQGQRDAENK----LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMEL  546 (701)
Q Consensus       486 ---------e------a~q~~qLk~lkeEL~~lRq~qr~le~k----L~slE~elqkLr~e~~~Lk~qle~~~~~~~~el  546 (701)
                               +      ...+.++..|+.||..++.....+..+    ....+.+++.|..++..+..... ........|
T Consensus       346 ~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~r-e~qeri~~L  424 (717)
T PF09730_consen  346 YYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSR-EDQERISEL  424 (717)
T ss_pred             hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHH
Confidence                     0      001123444555555555443332221    12234444444444433222110 111245788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  585 (701)
Q Consensus       547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~  585 (701)
                      +..|+.++...-+.+..+.....|..+.--.|-.+-...
T Consensus       425 E~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHV  463 (717)
T PF09730_consen  425 EKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHV  463 (717)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888887777776654443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.06  E-value=3.7  Score=46.78  Aligned_cols=33  Identities=9%  Similarity=0.172  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          557 LYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (701)
Q Consensus       557 L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~  589 (701)
                      +-.++.++..|..+....+...+.+..++.+..
T Consensus       350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~  382 (498)
T TIGR03007       350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE  382 (498)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335567777777777777777777777766643

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.03  E-value=1.3  Score=43.14  Aligned_cols=96  Identities=21%  Similarity=0.271  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005339          292 NAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM  371 (701)
Q Consensus       292 ~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~  371 (701)
                      .-..+..|.+-+.....|++++..|+++|...+..+..+.-.    ......++..|+..+..+..++..+...+.-+-.
T Consensus         5 ~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d----aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s   80 (140)
T PF10473_consen    5 FLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILD----AENSKAEIETLEEELEELTSELNQLELELDTLRS   80 (140)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677777788889999999999999998887776642    2335566666666666666666666666666666


Q ss_pred             HHHHHHHHhhhHHHHHHHHHH
Q 005339          372 NMESIMRNRELTETRMIQALR  392 (701)
Q Consensus       372 E~~rl~e~l~~~ekeilqSLE  392 (701)
                      ++..+...+.....+ +..|+
T Consensus        81 Ek~~L~k~lq~~q~k-v~eLE  100 (140)
T PF10473_consen   81 EKENLDKELQKKQEK-VSELE  100 (140)
T ss_pred             HHHHHHHHHHHHHHH-HHHHH
Confidence            666555555554444 33333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF13514 AAA_27: AAA domain

Probab=96.01  E-value=6.9  Score=49.44  Aligned_cols=19  Identities=42%  Similarity=0.669  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHhc
Q 005339          461 ECATLQQELQDMEARLKRG  479 (701)
Q Consensus       461 ElkqLkQeLq~lE~e~~r~  479 (701)
                      .+..+..++..++..+...
T Consensus       855 ~~~~l~~~~~~~~~~l~~~  873 (1111)
T PF13514_consen  855 ERRELREELEDLERQLERQ  873 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            3455666666666666443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.01  E-value=7.9  Score=50.09  Aligned_cols=36  Identities=19%  Similarity=0.217  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339          351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (701)
Q Consensus       351 rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (701)
                      .+..+-..+......+..+..+...+.+.+......
T Consensus       787 dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~  822 (1353)
T TIGR02680       787 SLRAAHRRAAEAERQAESAERELARAARKAAAAAAA  822 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444555555555555544444443333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.88  E-value=2.5  Score=43.33  Aligned_cols=81  Identities=16%  Similarity=0.287  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEK  571 (701)
Q Consensus       492 qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er  571 (701)
                      ++..++.+|..++.....++.++..++.+-..|.......=..+-+-+.-....|++++..|++.|..+..++.++..--
T Consensus        94 rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~  173 (201)
T PF13851_consen   94 RLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA  173 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34445556666666666666666666666666666543322222122234578999999999999999999999887744


Q ss_pred             H
Q 005339          572 A  572 (701)
Q Consensus       572 ~  572 (701)
                      +
T Consensus       174 n  174 (201)
T PF13851_consen  174 N  174 (201)
T ss_pred             C
Confidence            3

>PRK11281 hypothetical protein; Provisional

Probab=95.85  E-value=8.1  Score=48.96  Aligned_cols=33  Identities=15%  Similarity=0.096  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 005339          447 KAGELEQKVAMLEVECATLQQELQDMEARLKRG  479 (701)
Q Consensus       447 ea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~  479 (701)
                      +...+.++....+..+++++|.+..++.+..-+
T Consensus       300 ~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l  332 (1113)
T PRK11281        300 KLNTLTQQNLRVKNWLDRLTQSERNIKEQISVL  332 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444445555555555444444443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.83  E-value=5.2  Score=46.58  Aligned_cols=83  Identities=14%  Similarity=0.157  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAE  429 (701)
Q Consensus       350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~ae  429 (701)
                      .++-.|+.+++.++.-+...+++++++...+++.-.- .+.++.+    +.++.-|+..++-........+.+||++|-.
T Consensus       107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~-~~~~E~q----R~rlr~elKe~KfRE~RllseYSELEEENIs  181 (772)
T KOG0999|consen  107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKES-NAAVEDQ----RRRLRDELKEYKFREARLLSEYSELEEENIS  181 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            5778888899999999999999999988888874111 2333322    3344445556666666677788999999865


Q ss_pred             HHHHHHHH
Q 005339          430 ASMALARI  437 (701)
Q Consensus       430 LseALael  437 (701)
                      |.+.++.+
T Consensus       182 LQKqVs~L  189 (772)
T KOG0999|consen  182 LQKQVSNL  189 (772)
T ss_pred             HHHHHHHH
Confidence            55544443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.81  E-value=1.1  Score=42.81  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEAS  431 (701)
Q Consensus       352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLs  431 (701)
                      +..++.++..++..++.+......++.++....+.        .+.++..|+.|...|..+-.    .+..+..+...+-
T Consensus         5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~--------a~~Aq~~YE~El~~Ha~~~~----~L~~lr~e~~~~~   72 (132)
T PF07926_consen    5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKI--------AQEAQQKYERELVKHAEDIK----ELQQLREELQELQ   72 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHH
Confidence            34444455555555555555555555444443333        77888888888888866632    3333433433333


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339          432 MALARIQRIADERTAKA----GELEQKVAMLEVECATLQQELQDME  473 (701)
Q Consensus       432 eALaelQrkLeEe~aea----~eLeqQls~LE~ElkqLkQeLq~lE  473 (701)
                      ..+..+....+.....+    ..|..+=.+|+.++..++.++.++.
T Consensus        73 ~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~  118 (132)
T PF07926_consen   73 QEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN  118 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444443333    2333333444444444444444444

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.80  E-value=1.2  Score=42.40  Aligned_cols=121  Identities=15%  Similarity=0.196  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHH
Q 005339          440 IADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEA  519 (701)
Q Consensus       440 kLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~  519 (701)
                      .+..-.........++..+..|++.........+..|.+.-..-..   .+..|..++.+++.++.....++..+.+...
T Consensus        11 e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~---~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~   87 (132)
T PF07926_consen   11 ELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAE---DIKELQQLREELQELQQEINELKAEAESAKA   87 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444555555555556666666666666665554322211   1224555666666666555555555555555


Q ss_pred             HHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          520 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE  581 (701)
Q Consensus       520 elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~  581 (701)
                      .+...+..|.                  .+=..|..++.+.+.+++.|...+.-|--|||.+
T Consensus        88 ~l~~~e~sw~------------------~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen   88 ELEESEASWE------------------EQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5555555553                  3445566677777777778888888887777753

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=95.66  E-value=5.3  Score=45.50  Aligned_cols=88  Identities=11%  Similarity=0.050  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005339          388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ  467 (701)
Q Consensus       388 lqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQ  467 (701)
                      +.++..+|+-+.+.+..+...+..+-..+..|...+|.+...+.+++.-+.+++.+.+.+++++..++....  +...++
T Consensus       208 l~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~--~l~~ke  285 (554)
T KOG4677|consen  208 LRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFR--FLDRKE  285 (554)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHH
Confidence            566667788888888888777778888899999999999988999999999999999999999998887755  456677


Q ss_pred             HHHHHHHHHH
Q 005339          468 ELQDMEARLK  477 (701)
Q Consensus       468 eLq~lE~e~~  477 (701)
                      +|-+....-.
T Consensus       286 eL~~s~~~e~  295 (554)
T KOG4677|consen  286 ELALSHYREH  295 (554)
T ss_pred             HHHHHHHHHh
Confidence            7755443333

>PF14992 TMCO5: TMCO5 family

Probab=95.53  E-value=4.3  Score=43.81  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339          369 LQMNMESIMRNRELTETRMIQALREELASVERRAE  403 (701)
Q Consensus       369 le~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le  403 (701)
                      +-+.+..+..++...|.. +++|+.++.-.-..++
T Consensus        16 ldE~Nq~lL~ki~~~E~~-iq~Le~Eit~~~~~~~   49 (280)
T PF14992_consen   16 LDEANQSLLQKIQEKEGA-IQSLEREITKMDHIAD   49 (280)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccccC
Confidence            334455555555555555 6666666555444433

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=95.50  E-value=3.9  Score=42.83  Aligned_cols=127  Identities=20%  Similarity=0.302  Sum_probs=71.4

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005339          272 ARLARVCAGLSSRLQEYKSENAQLEELLVAEREL--------SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS  343 (701)
Q Consensus       272 ~qLa~~~~RLrk~~~elksr~aqLEell~el~ek--------~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~  343 (701)
                      .++..-...+...+..+..++..|+..+......        ...|...+..|...+..++..+...+..+..+      
T Consensus        81 ~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~kr------  154 (247)
T PF06705_consen   81 NQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKR------  154 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            3444455566666666666777776666654443        34555566666777666666666666544433      


Q ss_pred             HHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          344 EIETLVSSIDALKKQA----ALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA  408 (701)
Q Consensus       344 eie~Le~rl~~Le~el----~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~a  408 (701)
                          |......+...+    ..-...+..+..+.+.+...............-.+|++++.++..|..+
T Consensus       155 ----l~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~  219 (247)
T PF06705_consen  155 ----LEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQE  219 (247)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                222222333333    3333444455555555554444445553444667888888888887665

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.31  E-value=1.8  Score=47.27  Aligned_cols=123  Identities=28%  Similarity=0.343  Sum_probs=80.9

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005339          273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI  352 (701)
Q Consensus       273 qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl  352 (701)
                      -+.-++..|.+....++.-.+.|...+..+.+..-.+..+...|..++..++........       --..++..+..++
T Consensus       146 ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~-------~D~~eL~~lr~eL  218 (325)
T PF08317_consen  146 LLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIES-------CDQEELEALRQEL  218 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------cCHHHHHHHHHHH
Confidence            344466677777777777777777766666666666777777777777666654443332       1334555666666


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339          353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE  403 (701)
Q Consensus       353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le  403 (701)
                      ..+..++...+..+.+++.++..+...+..+..+ ++.+..+|+.++.-.+
T Consensus       219 ~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~-k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  219 AEQKEEIEAKKKELAELQEELEELEEKIEELEEQ-KQELLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            6677777777777777777777777777776666 6666666666665554

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.28  E-value=5.8  Score=43.50  Aligned_cols=7  Identities=0%  Similarity=-0.220  Sum_probs=2.7

Q ss_pred             CCCChhh
Q 005339          243 DDPPTKE  249 (701)
Q Consensus       243 ~ek~~~l  249 (701)
                      .+.+..+
T Consensus        68 G~~L~~l   74 (423)
T TIGR01843        68 GQVLVEL   74 (423)
T ss_pred             CCeEEEE
Confidence            3333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=95.23  E-value=6  Score=44.71  Aligned_cols=146  Identities=16%  Similarity=0.188  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005339          292 NAQLEELLVAERE-LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ  370 (701)
Q Consensus       292 ~aqLEell~el~e-k~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele  370 (701)
                      .-.||.++-..++ -..-|-+++..||.+-...|..+.|+..+...-..+.+.+.+.          -+..+=.|+++++
T Consensus       145 k~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEa----------lvN~LwKrmdkLe  214 (552)
T KOG2129|consen  145 KLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEA----------LVNSLWKRMDKLE  214 (552)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHH----------HHHHHHHHHHHHH
Confidence            3345554333332 2344555677777776666777777766555222222222222          2445566778888


Q ss_pred             HHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          371 MNMESIMRNREL-----------------------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA  427 (701)
Q Consensus       371 ~E~~rl~e~l~~-----------------------~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~  427 (701)
                      .+++.|+.+++.                       .++.+++-|+.++.-++..+..=...|..--++....+..+.+++
T Consensus       215 ~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen  294 (552)
T KOG2129|consen  215 QEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREEN  294 (552)
T ss_pred             HHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            888888777754                       134444444444444444433333333333343333444443333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          428 AEASMALARIQRIADERTAKAGELEQK  454 (701)
Q Consensus       428 aeLseALaelQrkLeEe~aea~eLeqQ  454 (701)
                             ..+|++|..+.-+-.-|.++
T Consensus       295 -------~rlQrkL~~e~erRealcr~  314 (552)
T KOG2129|consen  295 -------ERLQRKLINELERREALCRM  314 (552)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHH
Confidence                   45556665555444444443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.23  E-value=5.9  Score=43.26  Aligned_cols=65  Identities=18%  Similarity=0.286  Sum_probs=33.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHH
Q 005339          454 KVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM  528 (701)
Q Consensus       454 Qls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~  528 (701)
                      ++..+-.....|+..|..|-......+..+.-...   -...++.|+...-.       ++..+|.+...++..+
T Consensus       203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe---~F~tfk~Emekm~K-------k~kklEKE~~~~k~k~  267 (309)
T PF09728_consen  203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNE---VFETFKKEMEKMSK-------KIKKLEKENQTWKSKW  267 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            66666666667777777777666665533311111   12234444443332       3333566666666555

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=95.14  E-value=11  Score=46.05  Aligned_cols=97  Identities=18%  Similarity=0.148  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005339          389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHR---AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATL  465 (701)
Q Consensus       389 qSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee---~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqL  465 (701)
                      ...+.....++..+..-...|.......-+..+.++.+   ..++.+-..++.+.+.+-......++.+.....--++++
T Consensus       420 l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l  499 (980)
T KOG0980|consen  420 LAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESL  499 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33444456666666666677777766666665555443   356666777777777777777777777777777778888


Q ss_pred             HHHHHHHHHHHHhcccCChH
Q 005339          466 QQELQDMEARLKRGQKKSPE  485 (701)
Q Consensus       466 kQeLq~lE~e~~r~qek~~~  485 (701)
                      ++++..+..++.+++..+..
T Consensus       500 ~~El~~l~~e~~~lq~~~~~  519 (980)
T KOG0980|consen  500 RQELALLLIELEELQRTLSN  519 (980)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            88887777777777655433

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.08  E-value=5.1  Score=45.37  Aligned_cols=143  Identities=15%  Similarity=0.166  Sum_probs=101.1

Q ss_pred             hhhHHhhhhcCCCChhhhhhHHHHHHHHHhh----hhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005339          233 NKRKQQALKADDPPTKEQDQLDEAQGLLKTT----ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS  308 (701)
Q Consensus       233 ~~~~~~~~~~~ek~~~lqkQLee~n~~LrsE----~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~  308 (701)
                      -+.+.|+..|.+.+.-.++.-.|+-.++--+    ++.+++++.||.....+|+.-..-+++....|+.-.++..+..-.
T Consensus       264 Eq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~  343 (502)
T KOG0982|consen  264 EQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEA  343 (502)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            5678888889998888888888888777665    588999999999999999999999999999999987777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHH
Q 005339          309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE--------GNLASLQMNMESIMRN  379 (701)
Q Consensus       309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K--------~rleele~E~~rl~e~  379 (701)
                      +..++...|....+.=..+.+-+.    .-.+-...|++|-..+..++.......        .|+.+++.+.+++.+.
T Consensus       344 lrlql~~eq~l~~rm~d~Lrrfq~----ekeatqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~  418 (502)
T KOG0982|consen  344 LRLQLICEQKLRVRMNDILRRFQE----EKEATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQP  418 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccc
Confidence            777777766665555544444333    222334455555544444443322222        5666777776666544

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.07  E-value=10  Score=45.09  Aligned_cols=43  Identities=14%  Similarity=0.218  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccC
Q 005339          440 IADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK  482 (701)
Q Consensus       440 kLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek  482 (701)
                      .......++..++.++..+..+++.--+.+..+..++.+.-+.
T Consensus       441 e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~  483 (594)
T PF05667_consen  441 ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD  483 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3334446667777777777777777666677777777776654

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=95.03  E-value=15  Score=46.74  Aligned_cols=34  Identities=6%  Similarity=0.064  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339          447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (701)
Q Consensus       447 ea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q  480 (701)
                      +...+.++....+..+.+++|.+..++++..-++
T Consensus       280 ~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~  313 (1109)
T PRK10929        280 RMDLIASQQRQAASQTLQVRQALNTLREQSQWLG  313 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344444444445555555665555555555444

>PRK01156 chromosome segregation protein; Provisional

Probab=95.01  E-value=12  Score=45.85  Aligned_cols=6  Identities=50%  Similarity=0.966  Sum_probs=2.4

Q ss_pred             CCCCCC
Q 005339           37 ASNGQG   42 (701)
Q Consensus        37 ~~~~~~   42 (701)
                      |.||.|
T Consensus        30 G~NGsG   35 (895)
T PRK01156         30 GKNGAG   35 (895)
T ss_pred             CCCCCC
Confidence            334443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=94.83  E-value=5.7  Score=41.04  Aligned_cols=154  Identities=18%  Similarity=0.224  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005339          270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAE---RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE  346 (701)
Q Consensus       270 ke~qLa~~~~RLrk~~~elksr~aqLEell~el---~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie  346 (701)
                      |.+.++-++..|++...++..+...+=.+=+.+   +......+..+..|+..+..-.-++..-+    ..+..+.++++
T Consensus         8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce----~ELqr~~~Ea~   83 (202)
T PF06818_consen    8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCE----NELQRKKNEAE   83 (202)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhH----HHHHHHhCHHH
Confidence            556677778888888777766544333222211   11222222233333333322222222111    22223444444


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          347 TLVSSIDALKKQAALSEGNLASLQ---MNMESIMRNRELT-----ETRMIQALREELASVERRAEEERAAHNATKMAAME  418 (701)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele---~E~~rl~e~l~~~-----ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~  418 (701)
                      -|...+..++.++..++..+..+-   .+...+...-...     ....+.+|..++..++..+..|...+......|..
T Consensus        84 lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~  163 (202)
T PF06818_consen   84 LLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQ  163 (202)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            555555555555555555555541   1111100000000     01125566667777777777766665555554444


Q ss_pred             HHHHHHHHH
Q 005339          419 REVELEHRA  427 (701)
Q Consensus       419 Re~eLEee~  427 (701)
                      -=..+.++.
T Consensus       164 ER~~W~eEK  172 (202)
T PF06818_consen  164 ERRTWQEEK  172 (202)
T ss_pred             HHHHHHHHH
Confidence            444555554

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.77  E-value=0.26  Score=49.79  Aligned_cols=106  Identities=25%  Similarity=0.324  Sum_probs=43.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005339          273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA-------RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEI  345 (701)
Q Consensus       273 qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~-------rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~ei  345 (701)
                      .+.....+|++.++++.+....+...|..+......++.       +|..|+.++...+..+....    ..+..++..+
T Consensus        71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~----~~l~ek~k~~  146 (194)
T PF08614_consen   71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLE----EELKEKNKAN  146 (194)
T ss_dssp             -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence            344445556666666666655555555544444333333       44444444444444444433    3444567777


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339          346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (701)
Q Consensus       346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (701)
                      +.|.+++.+|+-++..+..++.+++.|++.|-++.-.
T Consensus       147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~  183 (194)
T PF08614_consen  147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ  183 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888888888888888887777666554

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.75  E-value=7.9  Score=42.29  Aligned_cols=114  Identities=17%  Similarity=0.162  Sum_probs=74.5

Q ss_pred             HHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          258 GLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA  337 (701)
Q Consensus       258 ~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~ea  337 (701)
                      +.+..+...+.-+-.+|......++..+.-.......||.++|+++-..+.+......+..+-..   .+..+.+.|...
T Consensus        39 k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~---kR~el~~kFq~~  115 (309)
T PF09728_consen   39 KRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEE---KRKELSEKFQAT  115 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            33444444444555667777777777777778888899999999888888888876666555433   334455566666


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005339          338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME  374 (701)
Q Consensus       338 Lsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~  374 (701)
                      +......|+.-......+..+-..+..++..+.++-+
T Consensus       116 L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye  152 (309)
T PF09728_consen  116 LKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYE  152 (309)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666665555555566666666666666655543

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.59  E-value=0.0096  Score=70.97  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMA  568 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~  568 (701)
                      ..|+..++...+.+..-+.+++.+.
T Consensus       498 ~~Le~~~~~~~~~~~~lq~qle~lq  522 (713)
T PF05622_consen  498 EKLEEENREANEKILELQSQLEELQ  522 (713)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555444

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.55  E-value=15  Score=44.69  Aligned_cols=82  Identities=10%  Similarity=0.022  Sum_probs=37.2

Q ss_pred             HHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcc------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          502 RARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS------REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE  575 (701)
Q Consensus       502 ~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~------~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~  575 (701)
                      +..+...++..++..+...+.++.+.++++..|.+..+      .+....++-.+-.++++-.+++--+.....-..+|.
T Consensus       852 ~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk  931 (970)
T KOG0946|consen  852 LIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALK  931 (970)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHH
Confidence            33333344444555566666666666555554442110      011122333444555555555444444444444555


Q ss_pred             HHHHHHHH
Q 005339          576 FQLEKEMN  583 (701)
Q Consensus       576 ~qLE~~~~  583 (701)
                      --|+.+..
T Consensus       932 ~~l~dL~q  939 (970)
T KOG0946|consen  932 EALEDLNQ  939 (970)
T ss_pred             HHHHHhCC
Confidence            55555443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.53  E-value=6.5  Score=40.34  Aligned_cols=95  Identities=15%  Similarity=0.187  Sum_probs=57.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005339          280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA  359 (701)
Q Consensus       280 RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el  359 (701)
                      -+++......+.+..+...+..+.+-...++..+..|+..|..       -+. ....|...+..+..++..+..+.-+.
T Consensus        38 emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~-------y~k-dK~~L~~~k~rl~~~ek~l~~Lk~e~  109 (201)
T PF13851_consen   38 EMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN-------YEK-DKQSLQNLKARLKELEKELKDLKWEH  109 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444455555555555555555544       222 22234445556667777888888888


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhh
Q 005339          360 ALSEGNLASLQMNMESIMRNREL  382 (701)
Q Consensus       360 ~~~K~rleele~E~~rl~e~l~~  382 (701)
                      ..+..+..+++.+.+.|....+.
T Consensus       110 evL~qr~~kle~ErdeL~~kf~~  132 (201)
T PF13851_consen  110 EVLEQRFEKLEQERDELYRKFES  132 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888877776

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.52  E-value=11  Score=42.97  Aligned_cols=11  Identities=9%  Similarity=-0.079  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHH
Q 005339          656 RIILLFYLVFV  666 (701)
Q Consensus       656 Rl~~l~Y~vlL  666 (701)
                      ++|+|+|++++
T Consensus       476 ~~~~~~~~~~~  486 (498)
T TIGR03007       476 LAAFLASAGLL  486 (498)
T ss_pred             HHHHHHHHHHH
Confidence            34444554443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=94.47  E-value=8.9  Score=41.71  Aligned_cols=30  Identities=20%  Similarity=0.226  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          558 YYKQTQLETMASEKAAAEFQLEKEMNRLQE  587 (701)
Q Consensus       558 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~  587 (701)
                      ...+..+-.|.+|.--|+-||+.+..+++.
T Consensus       217 es~eERL~QlqsEN~LLrQQLddA~~K~~~  246 (305)
T PF14915_consen  217 ESLEERLSQLQSENMLLRQQLDDAHNKADN  246 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333456667778888888888888877764

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=94.35  E-value=12  Score=43.51  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE  575 (701)
Q Consensus       497 keEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~  575 (701)
                      ..|-+.+......++....++..++..+...+..|++.++    +...-||.||..|+|+|+..+.++..-..|+++|.
T Consensus       440 ~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~----TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  440 YAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE----TTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444455555666666666666777776662    34689999999999999999999999999999886

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=94.33  E-value=18  Score=44.74  Aligned_cols=13  Identities=15%  Similarity=0.189  Sum_probs=5.6

Q ss_pred             CChhhhhhHHHHH
Q 005339          245 PPTKEQDQLDEAQ  257 (701)
Q Consensus       245 k~~~lqkQLee~n  257 (701)
                      .|..+..++.++.
T Consensus       233 e~e~l~~~~~el~  245 (908)
T COG0419         233 EIEALEERLAELE  245 (908)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.27  E-value=18  Score=44.31  Aligned_cols=120  Identities=25%  Similarity=0.282  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 005339          346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE---RRAEEERAAHNATKMAAMEREVE  422 (701)
Q Consensus       346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq---~~le~E~~aH~aTr~ea~~Re~e  422 (701)
                      ..|..++..++.+-..+...+.+++.+++.++-.+...+.. +.+|+.+|.+++   ..++.++..+.........|...
T Consensus       592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~-L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~  670 (769)
T PF05911_consen  592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQK-LEELQSELESAKESNSLAETQLKAMKESYESLETRLKD  670 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            33444444444444444444444444444444444444444 444444433332   23333344444444455556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339          423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ  466 (701)
Q Consensus       423 LEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLk  466 (701)
                      ++.+...+..-+..++..++.++.-..++..+|..|+.++....
T Consensus       671 ~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~  714 (769)
T PF05911_consen  671 LEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMK  714 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence            66666666666777777777777766666666666665555443

The function of this family is unknown.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.26  E-value=16  Score=43.64  Aligned_cols=35  Identities=20%  Similarity=0.287  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339          344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMR  378 (701)
Q Consensus       344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e  378 (701)
                      ++.++..++..+.+++..++..++.++...+.+.+
T Consensus       217 el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~  251 (650)
T TIGR03185       217 ELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK  251 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444443333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=93.99  E-value=11  Score=41.14  Aligned_cols=53  Identities=17%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES  332 (701)
Q Consensus       280 RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es  332 (701)
                      +|+.+...+...+..|...+-..+-+++.|+..+..|-..--..+....+.+.
T Consensus        24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE   76 (310)
T PF09755_consen   24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEE   76 (310)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555556666666666666666666665555555554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.93  E-value=17  Score=44.10  Aligned_cols=79  Identities=10%  Similarity=0.252  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA  574 (701)
Q Consensus       495 ~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL  574 (701)
                      .+.+||+..+.+.+.+...|......+.+.+..+. .+... . . .....-+.|.+.+++-|.+--..|..+-.+...+
T Consensus       636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~~~-~-~-~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i  711 (717)
T PF10168_consen  636 EFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQKSP-K-K-KSIVLSESQKRTIKEILKQQGEEIDELVKQIKNI  711 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccc-c-C-CCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666665555555555555555555443 11110 0 0 1124556788888888888878887777776665


Q ss_pred             HHH
Q 005339          575 EFQ  577 (701)
Q Consensus       575 ~~q  577 (701)
                      ...
T Consensus       712 ~~~  714 (717)
T PF10168_consen  712 KKI  714 (717)
T ss_pred             HHh
Confidence            543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.68  E-value=1  Score=46.46  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339          331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR  380 (701)
Q Consensus       331 es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l  380 (701)
                      ..++.+.+...+..+.+|..+...|.+++..++.+++.++.+++.+++..
T Consensus       120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444555666777777777777777777777777766666544

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=93.67  E-value=13  Score=40.57  Aligned_cols=202  Identities=16%  Similarity=0.154  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH--
Q 005339          306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT--  383 (701)
Q Consensus       306 ~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~--  383 (701)
                      ..++..+...|+..|.---+.+++.-..|.       .++..|..+.+.|..++...|..-+.++.++.+..-++..-  
T Consensus        33 iei~Kekn~~Lqk~lKLneE~ltkTi~qy~-------~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~  105 (305)
T PF14915_consen   33 IEILKEKNDDLQKSLKLNEETLTKTIFQYN-------GQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQ  105 (305)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-------hhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555556666665544444444433333       33445555555566666666666666666665555554441  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhH
Q 005339          384 -ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKA----GELEQKVAML  458 (701)
Q Consensus       384 -ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea----~eLeqQls~L  458 (701)
                       ..+...+.+    .++-++..+...|-..+....-....|...|..|++-|...+.++.-=..+.    +.|+++--.+
T Consensus       106 d~dqsq~skr----dlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~l  181 (305)
T PF14915_consen  106 DHDQSQTSKR----DLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLAL  181 (305)
T ss_pred             hHHHHHhhHH----HHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111111111    1111122222222223332233345556666677777776666554433332    4555554444


Q ss_pred             HH---HHHHHHHHHHHHHHHHHhcccCChHHHHHHH----HHHHHHHHHHHHHHhHHHHHHhhhhHH
Q 005339          459 EV---ECATLQQELQDMEARLKRGQKKSPEEANQAI----QMQAWQDEVERARQGQRDAENKLSSLE  518 (701)
Q Consensus       459 E~---ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~----qLk~lkeEL~~lRq~qr~le~kL~slE  518 (701)
                      |.   |+.+.+..+..++..+...+.++..-....+    +|--++.|---+|+++.++..+-...+
T Consensus       182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke  248 (305)
T PF14915_consen  182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE  248 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43   4555555555555555444433332221111    122234444445555555444443333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.65  E-value=13  Score=40.67  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=11.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhhH
Q 005339          360 ALSEGNLASLQMNMESIMRNRELT  383 (701)
Q Consensus       360 ~~~K~rleele~E~~rl~e~l~~~  383 (701)
                      ..+..++-.+++||..|..+.+++
T Consensus       163 e~Lq~Klk~LEeEN~~LR~Ea~~L  186 (306)
T PF04849_consen  163 EALQEKLKSLEEENEQLRSEASQL  186 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444555555555555544

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.58  E-value=5.4  Score=43.68  Aligned_cols=121  Identities=19%  Similarity=0.262  Sum_probs=66.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005339          274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID  353 (701)
Q Consensus       274 La~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~  353 (701)
                      |.-++..|.+....++.-...|...+..+.+..-.|..+...|..++..++.....+++       -..++...+..++.
T Consensus       142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~-------~d~~eL~~lk~~l~  214 (312)
T smart00787      142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED-------CDPTELDRAKEKLK  214 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-------CCHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555554433333222       12334445555666


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005339          354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA  402 (701)
Q Consensus       354 ~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l  402 (701)
                      ....++...+..+++++.++..+...+.....+ ++.++.+|+.++.-.
T Consensus       215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~-k~e~~~~I~~ae~~~  262 (312)
T smart00787      215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNK-KSELNTEIAEAEKKL  262 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            666666666666666666666666666665555 555555555555543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.41  E-value=28  Score=43.68  Aligned_cols=41  Identities=15%  Similarity=0.286  Sum_probs=19.5

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339          333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM  373 (701)
Q Consensus       333 ~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~  373 (701)
                      .+...+++.++++..+..++..-+.++...+....+.-.+.
T Consensus       231 k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~  271 (1141)
T KOG0018|consen  231 KANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRREL  271 (1141)
T ss_pred             hhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555555444444443333

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=93.40  E-value=23  Score=42.74  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=17.3

Q ss_pred             Ccchhhhhhhhccccccccc-ccccc
Q 005339           88 DTATLAVEKETITTGKTQKN-GEQQQ  112 (701)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~-~~~~~  112 (701)
                      +...+.+|.+.|.|..++.- .+++.
T Consensus        70 ~~~~v~tqieiL~Sr~v~~~VV~~L~   95 (754)
T TIGR01005        70 DETGVATQVEILSSNEILKQVVDKLG   95 (754)
T ss_pred             cHHHHHHHHHHHccHHHHHHHHHHcC
Confidence            44567888899999988854 44443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.23  E-value=19  Score=41.26  Aligned_cols=71  Identities=15%  Similarity=0.230  Sum_probs=51.4

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          509 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  585 (701)
Q Consensus       509 ~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~  585 (701)
                      .+..++.+.+....+|++++..+=+      .+.-..|..||++++-.+---.+.|-.+..|...|+.|+.....++
T Consensus       356 a~~eei~~~eel~~~Lrsele~lp~------dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L  426 (521)
T KOG1937|consen  356 AVDEEIESNEELAEKLRSELEKLPD------DVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEAL  426 (521)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566667777777654333      2346889999999998766555889999999999999888866554

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=93.15  E-value=23  Score=42.00  Aligned_cols=46  Identities=20%  Similarity=0.331  Sum_probs=41.3

Q ss_pred             HhHHhhhhHhHhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 005339          635 AKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQA  681 (701)
Q Consensus       635 a~~lDs~sir~g~fLRRyP~aRl~~l~Y~vlLHLWV~~VL~~~~~~~  681 (701)
                      ...+|++.+-+|+|+..+-++|.+||||+|+||+.||+||+ +-+.+
T Consensus       575 l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v~~~l~-~~~~s  620 (629)
T KOG0963|consen  575 LGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLVFIVLY-LGAAS  620 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Confidence            45679999999999999999999999999999999999999 55543

>PLN02939 transferase, transferring glycosyl groups

Probab=93.13  E-value=30  Score=43.33  Aligned_cols=140  Identities=16%  Similarity=0.240  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH
Q 005339          419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQD  498 (701)
Q Consensus       419 Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lke  498 (701)
                      +...|+.+..-|..++.+++.++-....-+.    +++.|..++  +-.+.+.++.-+.+..++....+.-+.+-..++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (977)
T PLN02939        258 RVFKLEKERSLLDASLRELESKFIVAQEDVS----KLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRD  331 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            7788888888888888888888755543332    223333333  4444444444444443333222221112223333


Q ss_pred             HHHHHHHhHHHH-HHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          499 EVERARQGQRDA-ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE  570 (701)
Q Consensus       499 EL~~lRq~qr~l-e~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~E  570 (701)
                      .+..+.....++ -.++++.  .+..|+.+++.++..+    .....+...++.--.+.+.+-|..+..|..|
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (977)
T PLN02939        332 KVDKLEASLKEANVSKFSSY--KVELLQQKLKLLEERL----QASDHEIHSYIQLYQESIKEFQDTLSKLKEE  398 (977)
T ss_pred             HHHHHHHHHHHhhHhhhhHH--HHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333332222 1222221  2344445555555443    1224566666666777777777777766654

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=92.93  E-value=19  Score=40.53  Aligned_cols=20  Identities=25%  Similarity=0.464  Sum_probs=10.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhh
Q 005339          513 KLSSLEAEVQKMRVEMAAMK  532 (701)
Q Consensus       513 kL~slE~elqkLr~e~~~Lk  532 (701)
                      ++..+|.+...|..++..|.
T Consensus       260 ~lq~lEt~q~~leqeva~le  279 (499)
T COG4372         260 QLQRLETAQARLEQEVAQLE  279 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44445555666666654443

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=92.87  E-value=13  Score=38.50  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          517 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE  575 (701)
Q Consensus       517 lE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~  575 (701)
                      ...++..|+..++.               .+-++.+|.+.|.+|....+.|..=..-|.
T Consensus       159 ~~~e~~aLqa~lkk---------------~e~~~~SLe~~LeQK~kEn~ELtkICDeLI  202 (207)
T PF05010_consen  159 HQAELLALQASLKK---------------EEMKVQSLEESLEQKTKENEELTKICDELI  202 (207)
T ss_pred             hHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666532               234778888888888888777766544443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.86  E-value=0.5  Score=47.77  Aligned_cols=93  Identities=22%  Similarity=0.337  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE  575 (701)
Q Consensus       496 lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~  575 (701)
                      ++.||..+...+..+..+|..+..+++.++..+......+..+ ......|+.++..|.+.|.+|+..++.|.+|..+|.
T Consensus        79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l-~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~  157 (194)
T PF08614_consen   79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAEL-EAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ  157 (194)
T ss_dssp             -----------------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555554444444455445555555555443322222111 122477888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 005339          576 FQLEKEMNRLQEVQ  589 (701)
Q Consensus       576 ~qLE~~~~~~~~~~  589 (701)
                      +++-.++.+++..+
T Consensus       158 l~~~~~e~k~~~l~  171 (194)
T PF08614_consen  158 LQLNMLEEKLRKLE  171 (194)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888877654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=92.74  E-value=18  Score=39.70  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          558 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEA  592 (701)
Q Consensus       558 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~  592 (701)
                      -.+..+++.|..|....+..++.+..++++...++
T Consensus       274 ~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~  308 (362)
T TIGR01010       274 NEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEA  308 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445666777777777777777777776655433

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=92.70  E-value=18  Score=39.63  Aligned_cols=32  Identities=16%  Similarity=0.234  Sum_probs=13.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339          342 NSEIETLVSSIDALKKQAALSEGNLASLQMNM  373 (701)
Q Consensus       342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~  373 (701)
                      +.++..+..++..++.++...+..+..++.+.
T Consensus       150 ~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~  181 (423)
T TIGR01843       150 LAQIKQLEAELAGLQAQLQALRQQLEVISEEL  181 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.69  E-value=7.7  Score=38.63  Aligned_cols=45  Identities=24%  Similarity=0.352  Sum_probs=21.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339          280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (701)
Q Consensus       280 RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ  324 (701)
                      ++...+.+++.+..+++..+..++.....+...+..++..+...+
T Consensus        78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~  122 (191)
T PF04156_consen   78 RLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR  122 (191)
T ss_pred             hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            344455555555555555544444444444444444444443333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=92.65  E-value=14  Score=38.13  Aligned_cols=43  Identities=19%  Similarity=0.234  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339          431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (701)
Q Consensus       431 seALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE  473 (701)
                      +.-|...+-.|+..-.++.--+.+|..|+.++..+.+.+..+.
T Consensus        87 arkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~  129 (205)
T KOG1003|consen   87 ARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLS  129 (205)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence            4445555555555555555555566667777666666665444

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=92.47  E-value=22  Score=40.08  Aligned_cols=37  Identities=22%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339          350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (701)
Q Consensus       350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (701)
                      .+....++++...+..+.+++.++.++...-.++..+
T Consensus       116 ~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr  152 (499)
T COG4372         116 QEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR  152 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555556666666666666666666655544444444

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=92.25  E-value=44  Score=42.98  Aligned_cols=67  Identities=16%  Similarity=0.206  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHH
Q 005339          492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ  561 (701)
Q Consensus       492 qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ  561 (701)
                      +++.+..|+..++.++-  ...+++..++..+|..+...+.....- ---...+|+.++..++.+|.+++
T Consensus      1016 q~~e~~re~~~ld~Qi~--~~~~~~~~ee~~~L~~~~~~l~se~~~-~lg~~ke~e~~i~~~k~eL~~~~ 1082 (1294)
T KOG0962|consen 1016 KLKELERELSELDKQIL--EADIKSVKEERVKLEEEREKLSSEKNL-LLGEMKQYESQIKKLKQELREKD 1082 (1294)
T ss_pred             HHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHhhhHhhH-HHHHHHHHHHHHHHHHHHhhhhh
Confidence            44455566666665543  344666777777777775333221100 00235889999999999999776

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.23  E-value=12  Score=41.04  Aligned_cols=135  Identities=20%  Similarity=0.200  Sum_probs=57.5

Q ss_pred             hhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV  330 (701)
Q Consensus       251 kQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~  330 (701)
                      ..|++-...|+..-..|..+...+..+.-.|++....++.+..+|...-.+...-+          +.+|...+..+...
T Consensus       147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d----------~~eL~~lk~~l~~~  216 (312)
T smart00787      147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD----------PTELDRAKEKLKKL  216 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC----------HHHHHHHHHHHHHH
Confidence            34444444444444444444455555555555555555555444444222211111          11222222222222


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHH
Q 005339          331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL----TETRMIQALREELASVER  400 (701)
Q Consensus       331 es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~----~ekeilqSLE~eLkslq~  400 (701)
                      ..    .+..+...+.+++.++..+...+...+.+..++..+...+...+..    ..++ +..|...+..++.
T Consensus       217 ~~----ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~E-i~~Lk~~~~~Le~  285 (312)
T smart00787      217 LQ----EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKE-IEKLKEQLKLLQS  285 (312)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHH
Confidence            21    2223344444555555555555555555555555554444443333    2444 4444444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=92.16  E-value=19  Score=38.54  Aligned_cols=95  Identities=20%  Similarity=0.175  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT----ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVE  422 (701)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~----ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~e  422 (701)
                      +|+..+.-++.....+..+-..+..|..+++++..+.    .+. ...|+.+|..+.           +-+.+...+..+
T Consensus        49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q-~s~Leddlsqt~-----------aikeql~kyiRe  116 (333)
T KOG1853|consen   49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ-ESQLEDDLSQTH-----------AIKEQLRKYIRE  116 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            4444444444455555555555555555556555552    333 444444444333           234444556677


Q ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 005339          423 LEHRAAEASMA-------LARIQRIADERTAKAGELEQ  453 (701)
Q Consensus       423 LEee~aeLseA-------LaelQrkLeEe~aea~eLeq  453 (701)
                      ||.+|..|..+       +...+.+|++++-+...|+.
T Consensus       117 LEQaNDdLErakRati~sleDfeqrLnqAIErnAfLES  154 (333)
T KOG1853|consen  117 LEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLES  154 (333)
T ss_pred             HHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            77777666554       34445555555544444443

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=92.06  E-value=34  Score=41.26  Aligned_cols=63  Identities=22%  Similarity=0.263  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339          324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (701)
Q Consensus       324 Q~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (701)
                      +..+..+...+.+.+++..+-+..|+.++..++.........+..++.+.+-|.+.++.....
T Consensus       150 qeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~  212 (739)
T PF07111_consen  150 QEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEE  212 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            334455555677788888888888888888888877777777777777777777776664333

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=91.99  E-value=40  Score=41.90  Aligned_cols=28  Identities=14%  Similarity=0.090  Sum_probs=10.5

Q ss_pred             HHHHHHHhhhhhcchHHHHHHHHHhhhh
Q 005339          255 EAQGLLKTTISTGQSKEARLARVCAGLS  282 (701)
Q Consensus       255 e~n~~LrsE~e~l~~ke~qLa~~~~RLr  282 (701)
                      .....++.....|......+.+...++.
T Consensus       281 ~~~~~~~~~~~~L~~~~~e~~~~~~~~~  308 (908)
T COG0419         281 RLLEELEEKIERLEELEREIEELEEELE  308 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333433333333333333333

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.92  E-value=21  Score=38.48  Aligned_cols=37  Identities=14%  Similarity=0.161  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH
Q 005339          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT  383 (701)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~  383 (701)
                      +|-.|+.++..=+.--+.-++....+...|...-..+
T Consensus       131 D~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l  167 (265)
T COG3883         131 DLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAAL  167 (265)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666666555555555555555555554444443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=91.75  E-value=8  Score=41.63  Aligned_cols=57  Identities=30%  Similarity=0.344  Sum_probs=45.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005339          540 REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSR  596 (701)
Q Consensus       540 ~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~~~sr  596 (701)
                      ...+..|++.-.-|+-.|.-|..++.-|+.-.++-..++++++..+.....+++++.
T Consensus        73 ~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ  129 (307)
T PF10481_consen   73 MESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ  129 (307)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888888888888889999999999888888888888877766666676654

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.60  E-value=38  Score=40.83  Aligned_cols=23  Identities=17%  Similarity=0.131  Sum_probs=10.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhh
Q 005339          360 ALSEGNLASLQMNMESIMRNREL  382 (701)
Q Consensus       360 ~~~K~rleele~E~~rl~e~l~~  382 (701)
                      ...+.+...++.++.+.......
T Consensus       115 ~a~~~~e~~lq~q~e~~~n~~q~  137 (716)
T KOG4593|consen  115 EALKGQEEKLQEQLERNRNQCQA  137 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444555554444433333

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.58  E-value=16  Score=36.42  Aligned_cols=57  Identities=16%  Similarity=0.285  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339          419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR  475 (701)
Q Consensus       419 Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e  475 (701)
                      +...+......+.+-+..+++.+.+...++..++..+..+..++..+.+.+++.+.-
T Consensus       131 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l  187 (191)
T PF04156_consen  131 RLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL  187 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444445555555666666666666655555555555444433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=90.49  E-value=31  Score=37.90  Aligned_cols=26  Identities=23%  Similarity=0.473  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          307 RSYEARIKQLEQELSVYKSEVTKVES  332 (701)
Q Consensus       307 ~~Le~rl~~LQaeL~~EQ~~l~q~es  332 (701)
                      ..|+.++..|+.+....+.+..++..
T Consensus       163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~  188 (306)
T PF04849_consen  163 EALQEKLKSLEEENEQLRSEASQLKT  188 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            55666777777777777776666664

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=90.37  E-value=50  Score=40.07  Aligned_cols=43  Identities=9%  Similarity=0.159  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339          343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (701)
Q Consensus       343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (701)
                      ..++.|+ +...|.+++...|.+++++.-+.+++....+.+-.+
T Consensus       210 ermaAle-~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e  252 (916)
T KOG0249|consen  210 ERMAALE-DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE  252 (916)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3344444 566777778888888888888877777766665444

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.11  E-value=11  Score=35.87  Aligned_cols=93  Identities=22%  Similarity=0.343  Sum_probs=43.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339          303 RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (701)
Q Consensus       303 ~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (701)
                      +...+.++.++..++.++.+....+..+..++. ++...+++.       .....++..++..+.+++..-+.+.+-+..
T Consensus        22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv-~l~~~~e~~-------~~~~~~~~~L~~el~~l~~ry~t~LellGE   93 (120)
T PF12325_consen   22 QSQLRRLEGELASLQEELARLEAERDELREEIV-KLMEENEEL-------RALKKEVEELEQELEELQQRYQTLLELLGE   93 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            333444444555555555554444444444443 122222222       222233333344444444444444455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 005339          383 TETRMIQALREELASVERRAEE  404 (701)
Q Consensus       383 ~ekeilqSLE~eLkslq~~le~  404 (701)
                      +..+ ...|+.++..++.-+..
T Consensus        94 K~E~-veEL~~Dv~DlK~myr~  114 (120)
T PF12325_consen   94 KSEE-VEELRADVQDLKEMYRE  114 (120)
T ss_pred             hHHH-HHHHHHHHHHHHHHHHH
Confidence            5555 67777777777766544

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=90.02  E-value=56  Score=40.17  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 005339          547 EKRYRELTDLLYYKQTQLETMAS  569 (701)
Q Consensus       547 E~rl~eLtE~L~eKQ~qlE~L~~  569 (701)
                      +--.+.|++-|..|...|+....
T Consensus       271 eeEnk~Lke~l~~k~~ELq~sr~  293 (769)
T PF05911_consen  271 EEENKMLKEALAKKNSELQFSRN  293 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445666666666666555444

The function of this family is unknown.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=89.99  E-value=52  Score=39.71  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=13.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          306 SRSYEARIKQLEQELSVYKSEVTKVE  331 (701)
Q Consensus       306 ~~~Le~rl~~LQaeL~~EQ~~l~q~e  331 (701)
                      ...++..+-.|+.-|..+|..+...+
T Consensus       351 v~e~qtti~~L~~lL~~Eqqr~~~~e  376 (786)
T PF05483_consen  351 VTELQTTICNLKELLTTEQQRLKKNE  376 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            34444455566666665555544444

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.98  E-value=31  Score=37.16  Aligned_cols=42  Identities=21%  Similarity=0.061  Sum_probs=26.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  585 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~  585 (701)
                      ..|+++..++..-+..-......+..|+.+|..|.....+.+
T Consensus       186 ~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~qka~a~a~a  227 (265)
T COG3883         186 NSLNSQKAEKNALIAALAAKEASALGEKAALEEQKALAEAAA  227 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555667777788888886666655443

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=89.87  E-value=14  Score=42.87  Aligned_cols=136  Identities=17%  Similarity=0.175  Sum_probs=91.1

Q ss_pred             HhhhhcCCCChhhhh---hHHHHHHHHHhhhhhcchHHHHHH-HHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHhHHH
Q 005339          237 QQALKADDPPTKEQD---QLDEAQGLLKTTISTGQSKEARLA-RVCAGLSSRLQEYKSEN---AQLEELLVAERELSRSY  309 (701)
Q Consensus       237 ~~~~~~~ek~~~lqk---QLee~n~~LrsE~e~l~~ke~qLa-~~~~RLrk~~~elksr~---aqLEell~el~ek~~~L  309 (701)
                      .++.-.-+|...+.+   ||+---+.||+|.=+-..|+.++- ...-+|+.......+-.   +++=..+..+++-...|
T Consensus       159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL  238 (596)
T KOG4360|consen  159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL  238 (596)
T ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455554444   555666778888766778888888 55556777666655543   33333445677777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005339          310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI  376 (701)
Q Consensus       310 e~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl  376 (701)
                      .+.|+.++......    ....+++.+.|-...+-...|..++..++.+..+....+.++++++..+
T Consensus       239 lsql~d~qkk~k~~----~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l  301 (596)
T KOG4360|consen  239 LSQLVDLQKKIKYL----RHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL  301 (596)
T ss_pred             HHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            88888888877653    3334456666667777777788888888888888888888888886654

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=89.77  E-value=19  Score=34.35  Aligned_cols=13  Identities=31%  Similarity=0.549  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHH
Q 005339          390 ALREELASVERRA  402 (701)
Q Consensus       390 SLE~eLkslq~~l  402 (701)
                      .|+.+++.++.++
T Consensus        72 ~L~~el~~l~~ry   84 (120)
T PF12325_consen   72 ELEQELEELQQRY   84 (120)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=89.54  E-value=29  Score=36.10  Aligned_cols=42  Identities=21%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARI  437 (701)
Q Consensus       393 ~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALael  437 (701)
                      .-+.....++..+...|.+.+..+.   ..|+.+|.++......+
T Consensus       118 k~~~ey~~~l~~~eqry~aLK~hAe---ekL~~ANeei~~v~~~~  159 (207)
T PF05010_consen  118 KCIEEYEERLKKEEQRYQALKAHAE---EKLEKANEEIAQVRSKH  159 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence            3344445555555555666666544   23445554444444433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=89.50  E-value=6.3  Score=46.46  Aligned_cols=89  Identities=18%  Similarity=0.291  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005339          288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA  367 (701)
Q Consensus       288 lksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rle  367 (701)
                      +.+++..++..+..+.+-.+.|+..+.+++.++....+.+.++..++. .-..++-++..+..++..|+.++.+.+.+++
T Consensus       420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve  498 (652)
T COG2433         420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVE  498 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444443222 1223666777888888888888888888888


Q ss_pred             HHHHHHHHHH
Q 005339          368 SLQMNMESIM  377 (701)
Q Consensus       368 ele~E~~rl~  377 (701)
                      .|+..+.++.
T Consensus       499 ~L~~~l~~l~  508 (652)
T COG2433         499 ELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHH
Confidence            8887776655

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=89.43  E-value=49  Score=38.65  Aligned_cols=100  Identities=15%  Similarity=0.125  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 005339          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE---EERAAHNATKMAAM  417 (701)
Q Consensus       341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le---~E~~aH~aTr~ea~  417 (701)
                      .+....++..+++-++-.+......|+..-.++-+.+++.+.+..+ +..+.++++-+.-.-+   .-+.+++....+..
T Consensus       196 eq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq-l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~  274 (596)
T KOG4360|consen  196 EQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ-LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLT  274 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4444456777777777788888777888888888888888887777 5555555544433221   12333333333334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          418 EREVELEHRAAEASMALARIQRIA  441 (701)
Q Consensus       418 ~Re~eLEee~aeLseALaelQrkL  441 (701)
                      +.+.++|...++...-+.+.+-.|
T Consensus       275 aE~~EleDkyAE~m~~~~EaeeEL  298 (596)
T KOG4360|consen  275 AELEELEDKYAECMQMLHEAEEEL  298 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555533333333333333

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=89.39  E-value=32  Score=41.58  Aligned_cols=37  Identities=11%  Similarity=-0.004  Sum_probs=23.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHH-HHhhchhhhhhhhH
Q 005339          651 RYPIARIILLFYLVFVHLFLMYL-LHRLQEQADNFAAR  687 (701)
Q Consensus       651 RyP~aRl~~l~Y~vlLHLWV~~V-L~~~~~~~~~~~~~  687 (701)
                      +-|++|+-.-+-+.-|-+||-+. ++.-.+.+++.+++
T Consensus       582 ~~p~~~w~~p~vvawlel~vgmpa~yva~c~~nVksg~  619 (916)
T KOG0249|consen  582 GLPFAQWDGPTVVAWLELWVGMPAWYVAACRANVKSGA  619 (916)
T ss_pred             cCchhhcCCCeeeehhhHHhccHHHHHHHHHHHhhhhH
Confidence            45777776666677788888655 55555555554443

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=89.29  E-value=76  Score=40.64  Aligned_cols=41  Identities=17%  Similarity=0.149  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ  586 (701)
Q Consensus       546 lE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~  586 (701)
                      ++..+..-++-|.+--..+..+-.+...|..--+.+....+
T Consensus       381 l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~  421 (1109)
T PRK10929        381 LDAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALK  421 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444443333333333

>PRK11281 hypothetical protein; Provisional

Probab=89.28  E-value=76  Score=40.65  Aligned_cols=33  Identities=12%  Similarity=0.106  Sum_probs=16.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005339          340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMN  372 (701)
Q Consensus       340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E  372 (701)
                      ..++++..++.+...++..+.....++.++...
T Consensus       146 ~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~  178 (1113)
T PRK11281        146 EYNSQLVSLQTQPERAQAALYANSQRLQQIRNL  178 (1113)
T ss_pred             HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555555543

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.25  E-value=11  Score=41.10  Aligned_cols=83  Identities=22%  Similarity=0.287  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEF  576 (701)
Q Consensus       497 keEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~  576 (701)
                      ..|+..+.+....+...|..++.+...+.+++..++...        ..++..-...-...-..+-++-.+..|+.++..
T Consensus        49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~--------~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~  120 (314)
T PF04111_consen   49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL--------EELDEEEEEYWREYNELQLELIEFQEERDSLKN  120 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444445555555555554444322        112222223333333444555555566666666


Q ss_pred             HHHHHHHHHHH
Q 005339          577 QLEKEMNRLQE  587 (701)
Q Consensus       577 qLE~~~~~~~~  587 (701)
                      |++.+...++.
T Consensus       121 q~~~~~~~L~~  131 (314)
T PF04111_consen  121 QYEYASNQLDR  131 (314)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            66665555544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=89.21  E-value=15  Score=39.64  Aligned_cols=103  Identities=15%  Similarity=0.259  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE  443 (701)
Q Consensus       364 ~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeE  443 (701)
                      .+|.+++.++++|+.+.....        +.|.+++.++......+..-+.    ..+.|..++.-|.+....+++.-+-
T Consensus        18 qKIqelE~QldkLkKE~qQrQ--------fQleSlEAaLqKQKqK~e~ek~----e~s~LkREnq~l~e~c~~lek~rqK   85 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQ--------FQLESLEAALQKQKQKVEEEKN----EYSALKRENQSLMESCENLEKTRQK   85 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHhh----hhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            455666666666555444333        4455555555544443333333    4556667777777766666655444


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 005339          444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKR  478 (701)
Q Consensus       444 e~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r  478 (701)
                      =...+..-+.++.-||-.+..++..++.++.++.+
T Consensus        86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr  120 (307)
T PF10481_consen   86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKR  120 (307)
T ss_pred             hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555666666555555555555544444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=89.03  E-value=61  Score=39.17  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339          434 LARIQRIADERTAKAGELEQKVAMLEVECATLQ  466 (701)
Q Consensus       434 LaelQrkLeEe~aea~eLeqQls~LE~ElkqLk  466 (701)
                      +..+-.+...++.+..++...++.+-.+++.++
T Consensus       239 le~i~~~~~dqlqel~~l~~a~~q~~ee~~~~r  271 (716)
T KOG4593|consen  239 LEAINKNMKDQLQELEELERALSQLREELATLR  271 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555556666666666666666555555443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.01  E-value=39  Score=36.97  Aligned_cols=109  Identities=15%  Similarity=0.148  Sum_probs=58.0

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHH
Q 005339          277 VCAGLSSRLQEYKSENAQLEELLVA-----ERELSRSYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETL  348 (701)
Q Consensus       277 ~~~RLrk~~~elksr~aqLEell~e-----l~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es---~~~eaLsak~~eie~L  348 (701)
                      .|--|++...+.+.-...+|.....     .++-..+=.+....+...+...+. +.++++   =|.=+..-.+.....|
T Consensus        76 ~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~-~aRl~aK~~WYeWR~~ll~gl~~~L  154 (325)
T PF08317_consen   76 SCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKT-YARLEAKKMWYEWRMQLLEGLKEGL  154 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667777777777777787774331     111111111223344455544443 223332   1222233345666677


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339          349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (701)
Q Consensus       349 e~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (701)
                      ...+..|+.+...+...++.+..-+..+...+..+..+
T Consensus       155 ~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e  192 (325)
T PF08317_consen  155 EENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEE  192 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777766666666665555554444444

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=89.00  E-value=6.1  Score=36.74  Aligned_cols=68  Identities=24%  Similarity=0.363  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005339          518 EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAE  593 (701)
Q Consensus       518 E~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~~  593 (701)
                      -.+..+||.+..-||.-.        .+...+...|++.|-.|...|..+..|..+|.|+-+.+..|....+-++.
T Consensus         4 a~eYsKLraQ~~vLKKaV--------ieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~   71 (102)
T PF10205_consen    4 AQEYSKLRAQNQVLKKAV--------IEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE   71 (102)
T ss_pred             HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777776666533        66677889999999999999999999999999999999999888776665

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=88.84  E-value=66  Score=39.35  Aligned_cols=44  Identities=32%  Similarity=0.387  Sum_probs=32.9

Q ss_pred             HhhhhHHHHhhhhhcccCCCC----CCCCCCCcchhhhhchHHHhhhh
Q 005339           15 VDRRAKLVVNELADEQSDFQT----PASNGQGSQAKKIKSRIKAQRRH   58 (701)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~k~~~~~~~~~~~~   58 (701)
                      .||=|-|.-.=|--|.+.+-.    +-+|+..=.+|+-.+||||-+++
T Consensus        12 LDrCAsLL~dILrnE~sGsE~~yse~r~nsrplegK~~~~KKKG~~Kh   59 (861)
T PF15254_consen   12 LDRCASLLRDILRNEDSGSETVYSENRSNSRPLEGKRNGSKKKGPEKH   59 (861)
T ss_pred             hHHHHHHHHHhhhcccCCCcccccccccCCCcCCcccccccCCCCccc
Confidence            588888888878777774322    24677777788888999999888

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.81  E-value=15  Score=35.51  Aligned_cols=55  Identities=25%  Similarity=0.372  Sum_probs=34.4

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES  332 (701)
Q Consensus       278 ~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es  332 (701)
                      ..+|......++.+++.+|..+.....+.+.+...+..++..+..+++++.+++.
T Consensus        68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~  122 (151)
T PF11559_consen   68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN  122 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555556666777777777777777777666665

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF13514 AAA_27: AAA domain

Probab=88.61  E-value=82  Score=40.14  Aligned_cols=31  Identities=29%  Similarity=0.422  Sum_probs=15.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 005339          449 GELEQKVAMLEVECATLQQELQDMEARLKRG  479 (701)
Q Consensus       449 ~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~  479 (701)
                      ..+..++..++..+..+...+..++.++..+
T Consensus       804 ~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L  834 (1111)
T PF13514_consen  804 ERLQEQLEELEEELEQAEEELEELEAELAEL  834 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444445555555555555555544443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=88.54  E-value=7.2  Score=40.31  Aligned_cols=44  Identities=14%  Similarity=0.253  Sum_probs=20.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005339          356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER  400 (701)
Q Consensus       356 e~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~  400 (701)
                      ++++...+..+.++..++++|.+.+..+.++ ...++.++..++.
T Consensus       124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~-~~~l~~~~~~~~~  167 (206)
T PRK10884        124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKK-VDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            3333444444445555555555555554444 4444444444443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.25  E-value=15  Score=35.50  Aligned_cols=80  Identities=29%  Similarity=0.343  Sum_probs=54.3

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005339          273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI  352 (701)
Q Consensus       273 qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl  352 (701)
                      +|.-...||++.+..+...+..++...+.+....+.+...+.....++.+.+..+.+....+.-.+-+++-++.-|.+++
T Consensus        70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen   70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556667777777777777777777777777777777777777777777777777777666655555555555555443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=88.16  E-value=41  Score=36.15  Aligned_cols=57  Identities=14%  Similarity=0.249  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          350 SSIDALKKQAALSEGNLASLQMNMESIMRNREL----TETRMIQALREELASVERRAEEERA  407 (701)
Q Consensus       350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~----~ekeilqSLE~eLkslq~~le~E~~  407 (701)
                      ..+..|++++..++.++.+++.+..-|..=..+    +.=+ +.+|...|..++..-..|..
T Consensus        81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vq-Ia~L~rqlq~lk~~qqdEld  141 (258)
T PF15397_consen   81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQ-IANLVRQLQQLKDSQQDELD  141 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            345555566666666666666665444333333    1223 55555555555544444433

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=88.04  E-value=45  Score=36.47  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=24.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  582 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~  582 (701)
                      .++-..+.++.+.++..+..+..+.....+|....-...
T Consensus       217 ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~  255 (294)
T COG1340         217 VELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAK  255 (294)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566667777777777777766666666665554444

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=87.91  E-value=41  Score=38.68  Aligned_cols=79  Identities=13%  Similarity=0.119  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 005339          517 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQL---------ETMASEKAAAEFQLEKEMNRLQE  587 (701)
Q Consensus       517 lE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~ql---------E~L~~Er~sL~~qLE~~~~~~~~  587 (701)
                      ++.++..++.++..|+..+ .+.++.-..++.||..|..++.....++         ....+|-..|..+.+-+...+..
T Consensus       291 Le~qLa~~~aeL~~L~~~~-~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~s  369 (434)
T PRK15178        291 FETQLAEAKAEYAQLMVNG-LDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWES  369 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444443322 0112223555556666655555544333         23455666777777777777766


Q ss_pred             HHHHHhhhh
Q 005339          588 VQSEAERSR  596 (701)
Q Consensus       588 ~~~~~~~sr  596 (701)
                      +.+..+.+|
T Consensus       370 AlaaLE~AR  378 (434)
T PRK15178        370 ALQTLQQGK  378 (434)
T ss_pred             HHHHHHHHH
Confidence            665555555

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=87.85  E-value=14  Score=43.65  Aligned_cols=94  Identities=21%  Similarity=0.314  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAE  429 (701)
Q Consensus       350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~ae  429 (701)
                      .++.....++..+...+++++.++..|+..+..+.++ +..|+.+|..+......+...-         |      +...
T Consensus       415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~e-ie~L~~~l~~~~r~~~~~~~~~---------r------ei~~  478 (652)
T COG2433         415 REITVYEKRIKKLEETVERLEEENSELKRELEELKRE-IEKLESELERFRREVRDKVRKD---------R------EIRA  478 (652)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh---------H------HHHH
Confidence            3444555555666666666666666666666665555 6677777777776665432221         1      1112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005339          430 ASMALARIQRIADERTAKAGELEQKVAMLE  459 (701)
Q Consensus       430 LseALaelQrkLeEe~aea~eLeqQls~LE  459 (701)
                      +..-+..++++|.++..++++|+.++..+.
T Consensus       479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         479 RDRRIERLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234456677788888888888887766654

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=87.68  E-value=53  Score=36.85  Aligned_cols=121  Identities=11%  Similarity=0.154  Sum_probs=53.7

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005339          277 VCAGLSSRLQEYKSENAQLEELLVAERELSR---------SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET  347 (701)
Q Consensus       277 ~~~RLrk~~~elksr~aqLEell~el~ek~~---------~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~  347 (701)
                      ...-|.+++.+++.+....|..+..-+.+..         ....++..|..++...+..+...+..+...  .....+..
T Consensus       172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~  249 (444)
T TIGR03017       172 AALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGS--SGKDALPE  249 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCcccchh
Confidence            3445555555666666666665555444321         122355555555555554443333322100  00000000


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE  405 (701)
Q Consensus       348 Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E  405 (701)
                      +     ....-+..++.++.+++.++..+........-. +.+++.+|..++..+..|
T Consensus       250 ~-----~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~-v~~l~~~i~~l~~~l~~e  301 (444)
T TIGR03017       250 V-----IANPIIQNLKTDIARAESKLAELSQRLGPNHPQ-YKRAQAEINSLKSQLNAE  301 (444)
T ss_pred             h-----hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcH-HHHHHHHHHHHHHHHHHH
Confidence            0     111223445555555555555555544443333 444555555555555444

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=87.09  E-value=32  Score=33.73  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (701)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (701)
                      .|+.++.+|++++.......+.+..++...+..+..+..+
T Consensus        21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~e   60 (140)
T PF10473_consen   21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEE   60 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444555444444444444444444444443333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=86.86  E-value=49  Score=35.60  Aligned_cols=63  Identities=16%  Similarity=0.221  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHhhh
Q 005339          320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE-----------GNLASLQMNMESIMRNREL  382 (701)
Q Consensus       320 L~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K-----------~rleele~E~~rl~e~l~~  382 (701)
                      |...+.++...+..+...++....+...|..++...+.++.-+.           -+|..+..+++++.++..+
T Consensus        65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqd  138 (258)
T PF15397_consen   65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQD  138 (258)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555555555555556666666666666555443           2666666666666666555

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=86.84  E-value=26  Score=38.79  Aligned_cols=109  Identities=22%  Similarity=0.227  Sum_probs=47.5

Q ss_pred             HHhhhhhcchHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          260 LKTTISTGQSKEARLARVCAGLSSRLQEY---KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE  336 (701)
Q Consensus       260 LrsE~e~l~~ke~qLa~~~~RLrk~~~el---ksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~e  336 (701)
                      |++.+--+-.++--|...|.-+++++.++   +..+.+|=..|-..++..-...++...||.-+...+++-.+.+-    
T Consensus        73 lq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lql----  148 (401)
T PF06785_consen   73 LQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQL----  148 (401)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----
Confidence            33333333344555555555555555443   33344433333333333333333444444444443333222221    


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005339          337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN  372 (701)
Q Consensus       337 aLsak~~eie~Le~rl~~Le~el~~~K~rleele~E  372 (701)
                      +|.+..-+..+.+.+-+.|++|+.+.-.....+-++
T Consensus       149 qL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~e  184 (401)
T PF06785_consen  149 QLDALQQECGEKEEESQTLNRELAEALAYQQELNDE  184 (401)
T ss_pred             hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222233344455555556666666555555554444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.37  E-value=90  Score=38.17  Aligned_cols=35  Identities=14%  Similarity=0.145  Sum_probs=15.7

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005339          336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ  370 (701)
Q Consensus       336 eaLsak~~eie~Le~rl~~Le~el~~~K~rleele  370 (701)
                      ++++...+..+.|..|++.+-+.+....-.++.+|
T Consensus       600 eR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE  634 (717)
T PF10168_consen  600 ERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE  634 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH
Confidence            33333444445555555555444433333344444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=86.37  E-value=30  Score=38.75  Aligned_cols=37  Identities=14%  Similarity=0.267  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339          286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV  322 (701)
Q Consensus       286 ~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~  322 (701)
                      +.++.+..+.-.+..............+..|..++..
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~  252 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK  252 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            4555555544444333333333333344444444433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=86.29  E-value=30  Score=36.63  Aligned_cols=25  Identities=32%  Similarity=0.433  Sum_probs=10.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339          449 GELEQKVAMLEVECATLQQELQDME  473 (701)
Q Consensus       449 ~eLeqQls~LE~ElkqLkQeLq~lE  473 (701)
                      ..|.......+.+...|+.++....
T Consensus        92 ~~l~ee~~~ke~Ea~~lq~el~~ar  116 (246)
T PF00769_consen   92 ARLEEESERKEEEAEELQEELEEAR  116 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444443333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=86.27  E-value=43  Score=34.36  Aligned_cols=113  Identities=16%  Similarity=0.252  Sum_probs=69.0

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKM  414 (701)
Q Consensus       335 ~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~  414 (701)
                      ...|..|...++.|+.++..++.-+......|...+........-...-... +..|..-|+.++..+..-...      
T Consensus        59 eAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q-~~~L~~~l~~a~~nl~~a~~~------  131 (188)
T PF05335_consen   59 EAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQ-LETLKAALKAAQANLANAEQV------  131 (188)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------
Confidence            3467777788888888888888888888888888877777776666655555 555555566655554321111      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339          415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ  466 (701)
Q Consensus       415 ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLk  466 (701)
                                  .......|.+-...|+..+.+++.|.+++.....||+..+
T Consensus       132 ------------a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk  171 (188)
T PF05335_consen  132 ------------AEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTK  171 (188)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        1111222334444556666666666666666555554443

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=85.94  E-value=51  Score=34.92  Aligned_cols=78  Identities=19%  Similarity=0.294  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHH
Q 005339          309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI  388 (701)
Q Consensus       309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeil  388 (701)
                      |+.++.+++.+....+.++...+..           +..|+..+..++.+...+..+..+++.++.+|.......+.+ .
T Consensus        10 le~rL~q~eee~~~a~~~L~e~e~~-----------a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eE-k   77 (246)
T PF00769_consen   10 LEERLRQMEEEMRRAQEALEESEET-----------AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEE-K   77 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            3344444444554444444444332           236666777777777777777777777777766666665444 3


Q ss_pred             HHHHHHHHHH
Q 005339          389 QALREELASV  398 (701)
Q Consensus       389 qSLE~eLksl  398 (701)
                      ..|+.++..+
T Consensus        78 ~~Le~e~~e~   87 (246)
T PF00769_consen   78 EQLEQELREA   87 (246)
T ss_dssp             ---HHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3344443333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=85.76  E-value=80  Score=37.04  Aligned_cols=114  Identities=20%  Similarity=0.189  Sum_probs=58.9

Q ss_pred             hhhcCCCChhhhhhHHHHHHHHHhhh-------hhcchH--------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339          239 ALKADDPPTKEQDQLDEAQGLLKTTI-------STGQSK--------EARLARVCAGLSSRLQEYKSENAQLEELLVAER  303 (701)
Q Consensus       239 ~~~~~ek~~~lqkQLee~n~~LrsE~-------e~l~~k--------e~qLa~~~~RLrk~~~elksr~aqLEell~el~  303 (701)
                      ++|..++-..+  .|..+++.|+.+-       .+|+-+        +-..+++.+++-+--.++..+.-.-|.      
T Consensus       121 erk~~~qe~~~--rl~~L~~~Lrqee~~re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~rea------  192 (531)
T PF15450_consen  121 ERKGSEQEAGL--RLSKLQDMLRQEEQGREDACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREA------  192 (531)
T ss_pred             HhhhhHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            34444443333  5666667777762       112111        223344444444444444444433333      


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHH
Q 005339          304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALA-AKNSEIETLVSSIDALKKQAA  360 (701)
Q Consensus       304 ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLs-ak~~eie~Le~rl~~Le~el~  360 (701)
                      -.|..|+.++..|+.-+.....++-..+..+.+.+. .|.....-.+.++.++....+
T Consensus       193 kl~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l~al~gq~e  250 (531)
T PF15450_consen  193 KLCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERLRALQGQQE  250 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence            346677777777777777766666666554543333 344445555556666655544

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=85.45  E-value=1.2e+02  Score=38.65  Aligned_cols=29  Identities=10%  Similarity=0.165  Sum_probs=14.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMASEKA  572 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~  572 (701)
                      ..++..+..+...+...+..+..+.....
T Consensus       825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  853 (1047)
T PRK10246        825 EQIQQELAQLAQQLRENTTRQGEIRQQLK  853 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555544444444333

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=85.17  E-value=59  Score=34.98  Aligned_cols=118  Identities=19%  Similarity=0.175  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          347 TLVSSIDALKKQAALSEGNLASLQMN----MESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVE  422 (701)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E----~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~e  422 (701)
                      +|+.+.+.|.-++...|.+.+.-..+    ...|-+.++++ ..|+..+.+-+..|+++-.-=..+-++|-.-+.+=+..
T Consensus        63 dl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt-~aikeql~kyiReLEQaNDdLErakRati~sleDfeqr  141 (333)
T KOG1853|consen   63 DLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQT-HAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQR  141 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHH
Confidence            45555555555555555554433333    22333333332 23466666666666665433223334443322222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339          423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (701)
Q Consensus       423 LEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE  473 (701)
                      |-.++    +-.+-++..|+|.-    .|-.-+..|..+...|+|+|+--.
T Consensus       142 LnqAI----ErnAfLESELdEke----~llesvqRLkdEardlrqelavr~  184 (333)
T KOG1853|consen  142 LNQAI----ERNAFLESELDEKE----VLLESVQRLKDEARDLRQELAVRT  184 (333)
T ss_pred             HHHHH----HHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222    22333444444433    333334456677777788775443

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=84.68  E-value=74  Score=35.70  Aligned_cols=32  Identities=9%  Similarity=0.247  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          558 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (701)
Q Consensus       558 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~  589 (701)
                      ..++.++..|..+....+..++.+..++.+..
T Consensus       338 ~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~  369 (444)
T TIGR03017       338 NRQRDEMSVLQRDVENAQRAYDAAMQRYTQTR  369 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677788888888888888887776654

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=84.31  E-value=72  Score=35.31  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 005339          446 AKAGELEQKVAMLEVECATLQQELQDMEARLKR  478 (701)
Q Consensus       446 aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r  478 (701)
                      .+-.-|.+++..++.+..-+++.+..|..-+++
T Consensus       196 ~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~  228 (319)
T PF09789_consen  196 MENRYLKERLKQLQEEKELLKQTINKYKSALER  228 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455677888888888888899999888888874

>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin

Probab=83.79  E-value=59  Score=33.84  Aligned_cols=81  Identities=21%  Similarity=0.255  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHH--------HHHHHHHHHhh
Q 005339          311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQ--------MNMESIMRNRE  381 (701)
Q Consensus       311 ~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl-~~Le~el~~~K~rleele--------~E~~rl~e~l~  381 (701)
                      .++..||.+|...|.+..+.+.               |+-++ ..|++++..++.+-....        .....|++.+-
T Consensus         3 ekv~~LQ~AL~~LQaa~ekRE~---------------lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~Lr   67 (205)
T PF12240_consen    3 EKVERLQQALAQLQAACEKREQ---------------LERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLR   67 (205)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHH
Confidence            4667778888777776666553               22222 345555555543322111        34667888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          382 LTETRMIQALREELASVERRAEEERA  407 (701)
Q Consensus       382 ~~ekeilqSLE~eLkslq~~le~E~~  407 (701)
                      .++.+ +=+||.++--.++++-.|..
T Consensus        68 EkEEr-ILaLEad~~kWEqkYLEEs~   92 (205)
T PF12240_consen   68 EKEER-ILALEADMTKWEQKYLEESA   92 (205)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            88888 67899999999999855533

Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=83.49  E-value=60  Score=33.74  Aligned_cols=40  Identities=28%  Similarity=0.303  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339          433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM  472 (701)
Q Consensus       433 ALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~l  472 (701)
                      -+..|+..+....+++.-|+.++..++.++..++..+...
T Consensus        67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~  106 (202)
T PF06818_consen   67 ELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA  106 (202)
T ss_pred             hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            3456777788888889999999999999999999999776

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.82  E-value=1.3e+02  Score=36.99  Aligned_cols=61  Identities=15%  Similarity=0.304  Sum_probs=34.5

Q ss_pred             HHHHhhhhHHHHHHHHHHHH----HHhhhhh----hhcc--hhhhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 005339          509 DAENKLSSLEAEVQKMRVEM----AAMKRDA----EHYS--REEHMELEKRYRELTD-LLYYKQTQLETMAS  569 (701)
Q Consensus       509 ~le~kL~slE~elqkLr~e~----~~Lk~ql----e~~~--~~~~~elE~rl~eLtE-~L~eKQ~qlE~L~~  569 (701)
                      .|..+|...++.+++|++++    ..-+.+.    ...-  ...-.+|=.|+++|++ .|-++.+.-..|..
T Consensus       780 ~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef~arF~~llN  851 (1104)
T COG4913         780 QLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPEFLARFQELLN  851 (1104)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence            34556777778888888773    2222111    0000  0134678889999975 46666655555543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=82.79  E-value=60  Score=37.07  Aligned_cols=32  Identities=16%  Similarity=0.213  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          412 TKMAAMEREVELEHRAAEASMALARIQRIADE  443 (701)
Q Consensus       412 Tr~ea~~Re~eLEee~aeLseALaelQrkLeE  443 (701)
                      -+.....++.++.+..++..++.-+++++..+
T Consensus        91 ~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~  122 (459)
T KOG0288|consen   91 LRIRSLNEIRELREQKAEFENAELALREMRRK  122 (459)
T ss_pred             HHHHHHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence            34445556666666666666666666555443

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=82.10  E-value=45  Score=31.36  Aligned_cols=17  Identities=24%  Similarity=0.468  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 005339          388 IQALREELASVERRAEE  404 (701)
Q Consensus       388 lqSLE~eLkslq~~le~  404 (701)
                      +..|+..+..+...++.
T Consensus        60 ~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   60 IAELQAKIDEARRNLED   76 (107)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333334444444443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=80.77  E-value=1.4e+02  Score=36.23  Aligned_cols=30  Identities=20%  Similarity=0.216  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          559 YKQTQLETMASEKAAAEFQLEKEMNRLQEV  588 (701)
Q Consensus       559 eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~  588 (701)
                      .++.++..|+.+....+.-.+.+..|..+.
T Consensus       367 ~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~  396 (726)
T PRK09841        367 STQQEVLRLSRDVEAGRAVYLQLLNRQQEL  396 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566666666666666666665554

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=80.72  E-value=33  Score=29.96  Aligned_cols=63  Identities=19%  Similarity=0.250  Sum_probs=41.9

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE  587 (701)
Q Consensus       510 le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~  587 (701)
                      |+.++...=+.+..|+.++..               |+.+...|.++-.......+.|..|++++.-+|.-++.++++
T Consensus         9 LE~ki~~aveti~~Lq~e~ee---------------Lke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~   71 (72)
T PF06005_consen    9 LEEKIQQAVETIALLQMENEE---------------LKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE   71 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            444555555555555555543               334555666666777777778889999999999888887764

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	701
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	1e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	5e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 86.0 bits (213), Expect = 2e-17
 Identities = 61/341 (17%), Positives = 139/341 (40%), Gaps = 43/341 (12%)

Query: 248  KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSR 307
            ++  QL E + LL+  +       A    +   L+++ QE +    ++E  +  E E S+
Sbjct: 885  QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944

Query: 308  SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367
              +A  K+++Q++   + ++ + E+   +    K     T    I  ++    + E    
Sbjct: 945  QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK----VTADGKIKKMEDDILIMEDQNN 1000

Query: 368  SLQMNMESIMRNRELTETRMIQALREELASVERR-AEEERAAHNATKMAAMEREVELEHR 426
             L               T+  + L E ++ +    AEEE  A N TK+       + E  
Sbjct: 1001 KL---------------TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN-----KHESM 1040

Query: 427  AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE 486
             +E  + L + ++   E      +LE + + L  + A LQ ++ +++A+L + ++     
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE----- 1095

Query: 487  ANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMEL 546
                 ++QA    +E     + +A  K+  LE+ +  ++ ++ +         +    + 
Sbjct: 1096 -----ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES--------EKAARNKA 1142

Query: 547  EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587
            EK+ R+L++ L   +T+LE      A  +     +     +
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 83.0 bits (205), Expect = 2e-16
 Identities = 57/321 (17%), Positives = 128/321 (39%), Gaps = 21/321 (6%)

Query: 284  RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA------ 337
             +Q    E  + +E         +  E +  QL +E ++ + ++       AEA      
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 338  LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397
            LAAK  E+E ++  ++A  ++       L + +  M+   +  +L E        EE  +
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ--QMLDLEEQL------EEEEA 969

Query: 398  VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM 457
              ++ + E+   +       +  + +E +  + +     ++    + T    E E+K   
Sbjct: 970  ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029

Query: 458  LEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSL 517
            L       +  + ++E RLK+ ++KS +E  +  +    + E     +   + + +++ L
Sbjct: 1030 LTKLKNKHESMISELEVRLKK-EEKSRQELEKIKRK--LEGESSDLHEQIAELQAQIAEL 1086

Query: 518  EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577
            +A++ K   E+ A     E     +     K+ REL   +   Q  LE+  + +  AE Q
Sbjct: 1087 KAQLAKKEEELQAALARLEDE-TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145

Query: 578  ---LEKEMNRLQEVQSEAERS 595
               L +E+  L+    +   +
Sbjct: 1146 KRDLSEELEALKTELEDTLDT 1166

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 71.0 bits (174), Expect = 7e-13
 Identities = 47/318 (14%), Positives = 125/318 (39%), Gaps = 23/318 (7%)

Query: 217  SESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLAR 276
            +E+ LK+ + K   L  ++     K       E +   EA+ +         +K+  L  
Sbjct: 876  AEAELKELEQKHTQLCEEKNLLQEKLQ----AETELYAEAEEMRVRL----AAKKQELEE 927

Query: 277  VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES---N 333
            +   + +R++E +  + QL+      ++     E ++++ E      + E    +     
Sbjct: 928  ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987

Query: 334  LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM------ 387
            + + +     +   L      L+++ +    NLA  +   +++ + +   E+ +      
Sbjct: 988  MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047

Query: 388  ---IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADER 444
                +  R+EL  ++R+ E E +  +        +  EL+ + A+    L       ++ 
Sbjct: 1048 LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE 1107

Query: 445  TAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERAR 504
            T++     +K+  LE   + LQ++L+  +A   + +K   ++ + + +++A + E+E   
Sbjct: 1108 TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK---QKRDLSEELEALKTELEDTL 1164

Query: 505  QGQRDAENKLSSLEAEVQ 522
                  +    S   +  
Sbjct: 1165 DTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 47/304 (15%), Positives = 113/304 (37%), Gaps = 5/304 (1%)

Query: 312  RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371
            ++ + E+E+     E+ + +    +A A      +      +         +        
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 372  NMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEAS 431
              E  MR R   + + ++ +  E+ +     EE      A K    ++ ++LE +  E  
Sbjct: 911  AEE--MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968

Query: 432  MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI 491
             A  ++Q        K  ++E  + ++E +   L +E + +E R+        EE  +A 
Sbjct: 969  AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 492  QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSRE---EHMELEK 548
             +   +++ E           K      E++K++ ++     D      E   +  EL+ 
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088

Query: 549  RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEED 608
            +  +  + L     +LE   S+K  A  ++ +  + + ++Q + E  + +R      + D
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148

Query: 609  AEMK 612
               +
Sbjct: 1149 LSEE 1152

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.8 bits (150), Expect = 6e-10
 Identities = 42/239 (17%), Positives = 87/239 (36%), Gaps = 13/239 (5%)

Query: 380  RELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQR 439
            ++L     IQ       +V               +    +E E++ +  E      R Q+
Sbjct: 816  QQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQK 875

Query: 440  IADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDE 499
               E      ELEQK   L  E   LQ++LQ         ++     A +  +++    E
Sbjct: 876  AEAELK----ELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE 931

Query: 500  VERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSR------EEHMELEKRYREL 553
            +E       + E +   L+AE +KM+ +M  ++   E           E +  + + +++
Sbjct: 932  MEARI---EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988

Query: 554  TDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMK 612
             D +   + Q   +  E+   E ++      L E + +A+     +    S   + E++
Sbjct: 989  EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 33/256 (12%), Positives = 85/256 (33%), Gaps = 22/256 (8%)

Query: 247  TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELS 306
              E+ ++ +    L+  +   ++   +L         ++++ + +   +E+      +  
Sbjct: 947  QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006

Query: 307  RSYEARIKQLEQELSVYKSEV---TKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363
            +  E R+  L   L+  + +    TK+++     ++     ++    S   L+K     E
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 364  GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL 423
            G  + L   +  +       +   +    EEL +   R E+E +  N        RE+E 
Sbjct: 1067 GESSDLHEQIAELQAQIAELK-AQLAKKEEELQAALARLEDETSQKN--NALKKIRELES 1123

Query: 424  EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS 483
                 +  +   +  R                   E +   L +EL+ ++  L+     +
Sbjct: 1124 HISDLQEDLESEKAAR----------------NKAEKQKRDLSEELEALKTELEDTLDTT 1167

Query: 484  PEEANQAIQMQAWQDE 499
              +           D+
Sbjct: 1168 ATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 41/210 (19%), Positives = 81/210 (38%), Gaps = 4/210 (1%)

Query: 248  KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSR 307
             E+   D     ++  I   + +  +L +    L  R+ +  +  A+ EE      +L  
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

Query: 308  SYEARIKQLEQELSVYKSEVTKVE---SNLAEALAAKNSEIETLVSSIDALKKQAALSEG 364
             +E+ I +LE  L   +    ++E     L    +  + +I  L + I  LK Q A  E 
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095

Query: 365  NLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELE 424
             L +    +E    +++    + I+ L   ++ ++   E E+AA N  +    +   ELE
Sbjct: 1096 ELQAALARLED-ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154

Query: 425  HRAAEASMALARIQRIADERTAKAGELEQK 454
                E    L       + R +   + + K
Sbjct: 1155 ALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 70.9 bits (174), Expect = 8e-13
 Identities = 36/211 (17%), Positives = 79/211 (37%), Gaps = 5/211 (2%)

Query: 378  RNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMA-LAR 436
              R            + +  ++       A     K+    R VE   +        + +
Sbjct: 873  HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQ 932

Query: 437  IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAW 496
            +QR  DE+  +   L +K+  LE+  +T  ++L+    RL+  ++++    N+ + +   
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL--- 989

Query: 497  QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL 556
            Q+E+ + R+     + +  ++E    K + E   +  + +  +     E E+  R + D 
Sbjct: 990  QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049

Query: 557  LYYKQTQLET-MASEKAAAEFQLEKEMNRLQ 586
                   +E  +  E    E  L  E  R Q
Sbjct: 1050 AKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 64.7 bits (158), Expect = 7e-11
 Identities = 29/229 (12%), Positives = 81/229 (35%), Gaps = 22/229 (9%)

Query: 380  RELTETRMIQALREELASV----ERRAEEERAAHNATKMAAMEREVELEHRAAEASMALA 435
            R        Q +  E  S+      R    R  ++ T  A +  +       A+      
Sbjct: 850  RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR---EL 906

Query: 436  RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK--RGQKKSPEEANQA--I 491
            +  +I           ++    LE +   LQ+++ +     K    +  + E        
Sbjct: 907  KKLKIEARS---VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963

Query: 492  QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYR 551
            ++++  + +  + +  ++A N++ SL+ E+ K+R E+          ++ E   +E+   
Sbjct: 964  KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ--------TQTEKKTIEEWAD 1015

Query: 552  ELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRR 600
            +         ++L+   +     + +L + ++   +  +E    ++   
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEE 1064

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 31/226 (13%), Positives = 82/226 (36%), Gaps = 13/226 (5%)

Query: 373  MESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASM 432
                       ++ +IQ       +          A    +        + E +  +   
Sbjct: 855  RNKYQMMLREHKSIIIQKHVRGWLA-RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEA 913

Query: 433  -ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI 491
             ++ R +++      K  +L++K+     E  +L +++ ++E       +K         
Sbjct: 914  RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK--------- 964

Query: 492  QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYR 551
             +++  + +  + +  ++A N++ SL+ E+ K+R E+   + + +    E   + +    
Sbjct: 965  -LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI-EEWADKYKHETE 1022

Query: 552  ELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRV 597
            +L   L  + T L+T   E         KE+    E +   E  ++
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 39/252 (15%), Positives = 88/252 (34%), Gaps = 12/252 (4%)

Query: 357  KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAA 416
            ++AA++                 R      +IQ  +  +  V +R +  R A  A +   
Sbjct: 791  RRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQR-MYVVRKRYQCMRDATIALQALL 849

Query: 417  MEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATL-------QQEL 469
                V  +++          IQ+      A+        A++ ++C           ++L
Sbjct: 850  RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKL 909

Query: 470  QDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529
            +     ++R +K      N+ +Q+Q   DE  +     +    K+++LE        ++ 
Sbjct: 910  KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY---KSLLEKMNNLEITYSTETEKLR 966

Query: 530  AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589
            +        S EE      R   L + +   + +L    +EK   E   +K  +  +++ 
Sbjct: 967  SDVERLRM-SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025

Query: 590  SEAERSRVSRRS 601
            SE +      ++
Sbjct: 1026 SELKEQNTLLKT 1037

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 38/256 (14%), Positives = 80/256 (31%), Gaps = 29/256 (11%)

Query: 279  AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEAL 338
            A L   L   K +    E   +  ++  R + AR+             +  ++      +
Sbjct: 847  ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRT-----LKAIVYLQCCYRRMM 901

Query: 339  AAK-NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM-RNRELTETRM-----IQAL 391
            A +   +++    S++  KK     E  +  LQ  ++      + L E            
Sbjct: 902  AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 392  REELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451
             E+L S   R               +  + E+     E        + I +       E 
Sbjct: 962  TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021

Query: 452  EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAE 511
            EQ V+ L+ +   L+ E +++  R+    K+  E   + +                   E
Sbjct: 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV-----------------EE 1064

Query: 512  NKLSSLEAEVQKMRVE 527
             K   L+   +++R +
Sbjct: 1065 TKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 39/211 (18%)

Query: 270  KEARLARVCAGLSSRLQEYK----SENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325
            +E +  ++ A    R ++      ++  QL+  +  + +  +S   ++  LE   S    
Sbjct: 904  RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963

Query: 326  EVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385
            ++        E L     E +   + + +L+++                           
Sbjct: 964  KLRSDV----ERLRMSEEEAKNATNRVLSLQEE--------------------------- 992

Query: 386  RMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT 445
              I  LR+EL   +   +      +  K    +   EL+ +          + R   ++ 
Sbjct: 993  --IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050

Query: 446  AKAGELEQKVAMLEVECATLQQELQDMEARL 476
             +  E  +K   L  E   L+ +L D   R 
Sbjct: 1051 KEITETMEK--KLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 27/201 (13%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 229  ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEY 288
             TL      Q         +E  +L      ++         E ++ +    L  ++ E 
Sbjct: 885  RTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQ----LQRKIDEQ 940

Query: 289  KSENA-------QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAK 341
              E          LE     E E  RS   R++  E+E     + V     +L E +A  
Sbjct: 941  NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV----LSLQEEIAKL 996

Query: 342  NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401
              E+    +    +++ A   +     L   ++      +  +  + + + ++   +   
Sbjct: 997  RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056

Query: 402  AEEERAAHNATKMAAMEREVE 422
             E++           +  E  
Sbjct: 1057 MEKKLVEETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 25/216 (11%), Positives = 64/216 (29%), Gaps = 26/216 (12%)

Query: 400 RRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLE 459
             A   R    A  +   +R   +  R      A   +Q +      +     +   ML 
Sbjct: 808 CYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVR----NKYQMMLR 863

Query: 460 VECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEA 519
              + + Q+            +    +A   +Q    +   +R  +  +     +   + 
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRT--LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKK 921

Query: 520 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLE 579
               +  ++  ++R  +        E  K Y+ L +       ++  +    +    +L 
Sbjct: 922 LHIGLENKIMQLQRKID--------EQNKEYKSLLE-------KMNNLEITYSTETEKLR 966

Query: 580 KEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLE 615
            ++ RL+  + EA+ +              E+  L 
Sbjct: 967 SDVERLRMSEEEAKNATNRVL-----SLQEEIAKLR 997

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 7e-09
 Identities = 74/588 (12%), Positives = 167/588 (28%), Gaps = 170/588 (28%)

Query: 214 PVNSESSLKDADVK-VE-----TLSNKRKQQALKADDPPTK--------EQDQLDEAQGL 259
            V  ++ + + D K V+      LS +     + + D  +            Q +  Q  
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 260 LKTTISTGQS-KEARLARVCAGLSSRLQEYKSENAQL--EELLVAERELSRSYEARIKQL 316
           ++  +        + +       S   + Y  +  +L  +  + A+  +SR       +L
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKL 140

Query: 317 EQELSVYKSE--VT--------KVESNLAEALAAKNSEIETL------------VSSIDA 354
            Q L   +    V         K  + +A      + +++               +S + 
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGK--TWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 355 -LKKQAALS---EGNLASLQMNMESIMRNRELTETRMIQALREE--------LASVERRA 402
            L+    L    + N  S   +  +I       +  + + L+ +        L +V+   
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 403 EEE------------RAAHNATKMAAMER-EVELEHRA-----AEASMALARIQRIADER 444
                          R       ++A     + L+H +      E    L +        
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---- 313

Query: 445 TAKAGEL-EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERA 503
             +  +L  + +       + + + ++D  A     +  + ++    I+           
Sbjct: 314 --RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES---------- 361

Query: 504 RQGQRDAENKLSSLE-AEVQKMRVEMAAMKRDA-----------EHYSREEHME------ 545
                     L+ LE AE +KM   ++     A               + + M       
Sbjct: 362 ---------SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 546 ----LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS 601
               +EK+ +E T  +      LE     K   E+ L + +  +              ++
Sbjct: 413 KYSLVEKQPKEST--ISIPSIYLEL--KVKLENEYALHRSI--VDHYN--------IPKT 458

Query: 602 WSSWEEDAEMKSLEPLPL-----HH--RHIAGASVQLQKAA----KLLD----SGAVRAT 646
           + S +       L P  L      H   H+       ++        LD       +R  
Sbjct: 459 FDSDD-------LIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 647 RFLWRYPIARIILL----FYLVFV-------HLFLMYLLHRLQEQADN 683
              W    + +  L    FY  ++          +  +L  L +  +N
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 45/332 (13%), Positives = 89/332 (26%), Gaps = 82/332 (24%)

Query: 4   WLK-----AAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRH 58
           WL      + E + E++ +    +                       +    R+   + +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPY 243

Query: 59  SADESLKINDTAREQANTQASPVDVTPNKDTATLAVE-KETITTGKTQKNGEQQQTNERD 117
                L +               +V   K      +  K  +TT              R 
Sbjct: 244 E--NCLLVLL-------------NVQNAKAWNAFNLSCKILLTT--------------RF 274

Query: 118 APSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLP--- 174
                +T+     +           T T  +       +L        L+  P  LP   
Sbjct: 275 KQ---VTDFLSAATTTHISLDHHSMTLTPDEVK----SLL----LKY-LDCRPQDLPREV 322

Query: 175 ----PKEMGIVNEDRIDDAGQIT--KSADADAPLK-IDSKIQAVDPPVNSE--SSL---- 221
               P+ + I+ E   D        K  + D     I+S +  ++P    +    L    
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 222 KDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGL 281
             A +    LS       +  D     + D +     L K ++   Q KE+ +      +
Sbjct: 383 PSAHIPTILLS------LIWFDV---IKSDVMVVVNKLHKYSLVEKQPKESTI-----SI 428

Query: 282 SSRLQEYK---SENAQLEELLVAERELSRSYE 310
            S   E K        L   +V    + ++++
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 51.1 bits (121), Expect = 1e-06
 Identities = 47/397 (11%), Positives = 115/397 (28%), Gaps = 8/397 (2%)

Query: 204 IDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTT 263
            ++ +Q  D    + S +K    K E   +       + +      Q+  +       + 
Sbjct: 389 KEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSV 448

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323
            +  Q    +   + A    R +  +     LE +     E ++        +E  +   
Sbjct: 449 NARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDL 508

Query: 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383
           +           + L   + + +  +   D  ++        ++ +       M      
Sbjct: 509 QDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPY 568

Query: 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE 443
            T   Q +  +   V +       A         + E   +   A+A++    IQ   +E
Sbjct: 569 TTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEE 628

Query: 444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERA 503
               + E+   +          ++ + + + ++ +      E  +Q IQ +A   + +  
Sbjct: 629 IGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQL-----EGDHQQIQ-EALIFDNKHT 682

Query: 504 RQGQRDAENKLSSLEAEVQKM--RVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ 561
                        L   + +    VE   + RDA+  S+E+  E    +           
Sbjct: 683 NYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMM 742

Query: 562 TQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVS 598
              +  A   +      E E  R+  +        V+
Sbjct: 743 DCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVT 779

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 49.0 bits (116), Expect = 5e-06
 Identities = 39/253 (15%), Positives = 85/253 (33%), Gaps = 9/253 (3%)

Query: 370 QMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAE 429
            +  +   +N        +        +        +A   A           ++ ++ E
Sbjct: 585 SVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVE 644

Query: 430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA-N 488
                 R       + A       + A  + E   L+QE +    R K   +   E+A  
Sbjct: 645 PVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARK 704

Query: 489 QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEK 548
           + ++++A    VE     + +AE++  +   E +   V  A +K  A     E  +E  K
Sbjct: 705 ELLELEAMSMAVESTGNAKAEAESRAEAARIEGEG-SVLQAKLKAQALAIETEAELERVK 763

Query: 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEED 608
           + RE+ +L+Y +      ++  +  A  + +K     + +     R             +
Sbjct: 764 KVREM-ELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVA------GPE 816

Query: 609 AEMKSLEPLPLHH 621
            ++K L+ L L  
Sbjct: 817 MQVKLLQSLGLKS 829

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 30/259 (11%), Positives = 72/259 (27%), Gaps = 18/259 (6%)

Query: 377  MRNRELTET-RMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALA 435
             R + L         L+   A+   +   ++ A  + +       +E       A     
Sbjct: 757  AREQRLGSEQTKSDYLK--RANELVQWINDKQA--SLESRDFGDSIESVQSFMNAHKEYK 812

Query: 436  RIQRIADERTA-------KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN 488
            + ++    +          + + + ++   E   A       ++++     +K   E A 
Sbjct: 813  KTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAE 872

Query: 489  QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEK 548
                    Q ++    Q       KL +                      ++ +   LE 
Sbjct: 873  ALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLK--NLEA 930

Query: 549  RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM----NRLQEVQSEAERSRVSRRSWSS 604
               E   L     + L ++ ++     +    E+    +     Q    +S       + 
Sbjct: 931  FDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTL 990

Query: 605  WEEDAEMKSLEPLPLHHRH 623
              E   ++ +E L  HH H
Sbjct: 991  LAELERLQKIEDLHHHHHH 1009

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 7e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 8/34 (23%)

Query: 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346
           +K+L+  L +Y       +S  A ALA   + +E
Sbjct: 22  LKKLQASLKLYAD-----DS--APALAI-KATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	701
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	99.88
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.2
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.81
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.66
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.23
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.18
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.12
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.07
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.82
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.62
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.18
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.11
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.77
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.54
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.42
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	94.77
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	94.38
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.08
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	93.96
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	93.84
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	93.16
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	92.8
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	92.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.41
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.88
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	91.73
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.44
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	90.95
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	90.82
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	89.21
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	84.67
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	84.64
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	84.03
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	84.01
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	83.48
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	83.35
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	83.13
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	82.88
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.86
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	82.78
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.08
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	81.47
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	81.36
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	81.09
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	81.03
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	80.67

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=99.88  E-value=2.7e-21  Score=186.58  Aligned_cols=159  Identities=23%  Similarity=0.227  Sum_probs=139.9

Q ss_pred             hcCCCChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339          241 KADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL  320 (701)
Q Consensus       241 ~~~ek~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL  320 (701)
                      +.|+|+++|++||+|+|.+||+|+|+           ++||+|..+++.+..+++|..+++++++++.|++....|+.++
T Consensus         3 ~~neKi~~LekQL~E~n~kLk~EsE~-----------~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~   71 (168)
T 3o0z_A            3 LANEKLSQLQKQLEEANDLLRTESDT-----------AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDY   71 (168)
T ss_dssp             -------CTHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999996           9999999999999999999999999999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHH
Q 005339          321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR----EELA  396 (701)
Q Consensus       321 ~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE----~eLk  396 (701)
                      ...|..+.+.++ ...   -+.+.+.+|++++.+|+.++.+++.++.+++.+++.|++++++++|+ +++++    ++|+
T Consensus        72 ~~LQa~L~qEr~-~r~---q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe-~a~~eid~~~eLK  146 (168)
T 3o0z_A           72 YQLQAILEAERR-DRG---HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE-KNNLEIDLNYKLK  146 (168)
T ss_dssp             HHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence            888888888876 222   36788889999999999999999999999999999999999999999 99999    8899


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 005339          397 SVERRAEEERAAHNATKMA  415 (701)
Q Consensus       397 slq~~le~E~~aH~aTr~e  415 (701)
                      ++|++|++|..+|++|++.
T Consensus       147 alQ~~~eqE~~~H~~Tkar  165 (168)
T 3o0z_A          147 SLQQRLEQEVNEHKVTKAR  165 (168)
T ss_dssp             HHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999773

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.20  E-value=1.7e-06  Score=84.56  Aligned_cols=34  Identities=6%  Similarity=0.011  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          550 YRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN  583 (701)
Q Consensus       550 l~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~  583 (701)
                      +..+...+...+..+..+..+.+.+..++.++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (284)
T 1c1g_A          239 AEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE  272 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333444444333333333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.14  E-value=5.6e-06  Score=80.97  Aligned_cols=42  Identities=14%  Similarity=0.104  Sum_probs=25.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  585 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~  585 (701)
                      ..++..+..+...+...+..+..+....+.+..+++.+..++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  281 (284)
T 1c1g_A          240 EFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM  281 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455566666666666666666666666666666655544

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.81  E-value=7.9e-09  Score=125.98  Aligned_cols=42  Identities=21%  Similarity=0.193  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  585 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~  585 (701)
                      ..++.++.+|.++|.+.......+..++..|..+++.+..++
T Consensus      1119 ~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~I 1160 (1184)
T 1i84_S         1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160 (1184)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.66  E-value=4.6e-08  Score=119.29  Aligned_cols=97  Identities=12%  Similarity=0.091  Sum_probs=39.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005339          280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA  359 (701)
Q Consensus       280 RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el  359 (701)
                      .|++.+.+++.....++..+.++......|+.++..++.+|..++..+...+..+    ......+..|+.++..++.++
T Consensus       861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l----~~l~~~~~~Le~~l~ele~el  936 (1184)
T 1i84_S          861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR----VRLAAKKQELEEILHEMEARI  936 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555555555555666666655555555444333211    222333444444444444444


Q ss_pred             HHHHhHHHHHHHHHHHHHHHh
Q 005339          360 ALSEGNLASLQMNMESIMRNR  380 (701)
Q Consensus       360 ~~~K~rleele~E~~rl~e~l  380 (701)
                      ...+..+.+++.++..+...+
T Consensus       937 ee~ee~l~el~~e~~~le~el  957 (1184)
T 1i84_S          937 EEEEERSQQLQAEKKKMQQQM  957 (1184)
T ss_dssp             HHHHHC---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444433333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.23  E-value=0.093  Score=50.95  Aligned_cols=91  Identities=16%  Similarity=0.137  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----H
Q 005339          388 IQALREELASVERRAEEERAAHNATK---MAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLE----V  460 (701)
Q Consensus       388 lqSLE~eLkslq~~le~E~~aH~aTr---~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE----~  460 (701)
                      +.+|+.++..+|..++.|+.......   .+...|...|+.+...+-..+..+.-.-..-.-++..|++..+.++    +
T Consensus        64 k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~  143 (168)
T 3o0z_A           64 KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNY  143 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            55566667777777777765433222   2333344444333322222111111111111134456666666666    5


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 005339          461 ECATLQQELQDMEARLKR  478 (701)
Q Consensus       461 ElkqLkQeLq~lE~e~~r  478 (701)
                      +++.+++.++.-...+..
T Consensus       144 eLKalQ~~~eqE~~~H~~  161 (168)
T 3o0z_A          144 KLKSLQQRLEQEVNEHKV  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            577777777665554443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.18  E-value=0.1  Score=51.62  Aligned_cols=140  Identities=16%  Similarity=0.182  Sum_probs=72.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339          299 LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR  378 (701)
Q Consensus       299 l~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e  378 (701)
                      +.--++.+..+..++.+|+.+|..-|+.=..++.              +|+..|..++.....++.++..+..+.+.++.
T Consensus        12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~--------------ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~   77 (189)
T 2v71_A           12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEA--------------ELEAQLVQAEQRNRDLQADNQRLKYEVEALKE   77 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455566666777777777775555555554              55555555555666666666666666555555


Q ss_pred             HhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          379 NRELTETR---MIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKV  455 (701)
Q Consensus       379 ~l~~~eke---ilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQl  455 (701)
                      ++.....+   .+++|+.+|..++..           +.....++.+||..|..|..+.-+..-.+..--.+...+=++.
T Consensus        78 K~~~~~~e~~~~~~~Lq~el~~l~~~-----------~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~  146 (189)
T 2v71_A           78 KLEHQYAQSYKQVSVLEDDLSQTRAI-----------KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN  146 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            55443111   255555555555422           2333345666666655554443333333333333333333444


Q ss_pred             HhHHHHHH
Q 005339          456 AMLEVECA  463 (701)
Q Consensus       456 s~LE~Elk  463 (701)
                      .+|+.+++
T Consensus       147 alLE~El~  154 (189)
T 2v71_A          147 AFLESELD  154 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.12  E-value=0.11  Score=51.33  Aligned_cols=160  Identities=14%  Similarity=0.185  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339          405 ERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT----AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (701)
Q Consensus       405 E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~----aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q  480 (701)
                      |...++..-.+...+...++.+..++.+.-.+++..++.++    .+...|..++..|..++..++.++.....+...  
T Consensus        11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~--   88 (189)
T 2v71_A           11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK--   88 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            34444444445555666667666666665555555555544    445677777777777777777777555544333  


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 005339          481 KKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK  560 (701)
Q Consensus       481 ek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eK  560 (701)
                                 ++-.++.||..++...+.+..+|..+|....-|....+..        ..+-.+++.+++...|..+-.
T Consensus        89 -----------~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~--------~~SleD~e~kln~aiEr~alL  149 (189)
T 2v71_A           89 -----------QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT--------IMSLEDFEQRLNQAIERNAFL  149 (189)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHH
Confidence                       3345677788888777777777777777777777665331        123477788888877777776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          561 QTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (701)
Q Consensus       561 Q~qlE~L~~Er~sL~~qLE~~~~~~~~~~  589 (701)
                      +..++    |+..|...++|+.-.++...
T Consensus       150 E~El~----EKe~l~~~~QRLkdE~rDLk  174 (189)
T 2v71_A          150 ESELD----EKESLLVSVQRLKDEARDLR  174 (189)
T ss_dssp             HHHHH----HHHHHHCCC-----------
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            66665    57777777777665555443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.07  E-value=0.19  Score=51.28  Aligned_cols=154  Identities=9%  Similarity=0.079  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHH
Q 005339          424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERA  503 (701)
Q Consensus       424 Eee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~l  503 (701)
                      ..+...+...+..+...+......+.+++.++..++.++...+..+..++.++....+.-        ++.++..||..+
T Consensus        31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~k--------E~~aL~kEie~~  102 (256)
T 3na7_A           31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSER--------ELRSLNIEEDIA  102 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS--------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH--------HHHHHHHHHHHH
Confidence            344445555666777777777778888888888889999999999988888887765322        344556666666


Q ss_pred             HHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 005339          504 RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLE-KEM  582 (701)
Q Consensus       504 Rq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE-~~~  582 (701)
                      ...+..++..+..+...+..++..+..++..+.    .....++..-.++.+.+.+....+..+..++..+...+. .+.
T Consensus       103 ~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~----~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL  178 (256)
T 3na7_A          103 KERSNQANREIENLQNEIKRKSEKQEDLKKEML----ELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIY  178 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            655555555555555555555555544443321    112334444455555555555666666666666666654 334


Q ss_pred             HHHHHHH
Q 005339          583 NRLQEVQ  589 (701)
Q Consensus       583 ~~~~~~~  589 (701)
                      ..|+...
T Consensus       179 ~~Yerir  185 (256)
T 3na7_A          179 SFYERIR  185 (256)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5665543

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.82  E-value=0.33  Score=49.52  Aligned_cols=30  Identities=7%  Similarity=0.142  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339          353 DALKKQAALSEGNLASLQMNMESIMRNREL  382 (701)
Q Consensus       353 ~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (701)
                      .++..++..++.++..++.+...+++.+..
T Consensus        93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~  122 (256)
T 3na7_A           93 RSLNIEEDIAKERSNQANREIENLQNEIKR  122 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444443333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.62  E-value=0.05  Score=66.20  Aligned_cols=118  Identities=10%  Similarity=0.164  Sum_probs=35.0

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005339          273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS----YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL  348 (701)
Q Consensus       273 qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~----Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~L  348 (701)
                      .|...+.+|+..+.++..+...+|..+..++++.+.    +..++..|+.++..++......        ...++.+.+|
T Consensus       918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~--------~~~~~~v~~L  989 (1080)
T 2dfs_A          918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA--------KNATNRVLSL  989 (1080)
T ss_dssp             ---------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence            455567888888888888887777777777766543    3334555554444433321111        1223344444


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHH
Q 005339          349 VSSIDALKKQAALSEGNLASLQMNMESIMR----NRELTETRMIQALREELASVE  399 (701)
Q Consensus       349 e~rl~~Le~el~~~K~rleele~E~~rl~e----~l~~~ekeilqSLE~eLkslq  399 (701)
                      +.++..+++++..+......+++...++++    .+++++++ ++.|+..+..+.
T Consensus       990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e-~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          990 QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ-NTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            444444444444444444444444444443    33333444 444444333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.18  E-value=0.16  Score=61.76  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=12.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHH
Q 005339          450 ELEQKVAMLEVECATLQQELQDMEA  474 (701)
Q Consensus       450 eLeqQls~LE~ElkqLkQeLq~lE~  474 (701)
                      +|+.+++.|+.+...|++.+++++.
T Consensus      1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555553

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.11  E-value=0.87  Score=61.04  Aligned_cols=55  Identities=24%  Similarity=0.266  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccC
Q 005339          428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK  482 (701)
Q Consensus       428 aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek  482 (701)
                      +.+...+...+.+|.+...++.+++.++..|..+++.+..+-+.++.++...+.+
T Consensus      2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A         2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555556666666666666666666655555555555555433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.77  E-value=3.8  Score=55.15  Aligned_cols=86  Identities=15%  Similarity=0.210  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE  575 (701)
Q Consensus       496 lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~  575 (701)
                      ++.++...+.....++.+|..+++.++.|+.+.....        .....++.++.....+|..-+.-+..|..|+.-+.
T Consensus      2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~--------~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A         2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLI--------RETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence            3334444443334444444444444444444432211        22456777788888888888889999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 005339          576 FQLEKEMNRLQEVQ  589 (701)
Q Consensus       576 ~qLE~~~~~~~~~~  589 (701)
                      .+.+.+..++...-
T Consensus      2091 ~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A         2091 QQSENFNTQMSTVV 2104 (3245)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            98888877766654

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.54  E-value=1.5  Score=42.08  Aligned_cols=121  Identities=12%  Similarity=0.130  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHR  426 (701)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee  426 (701)
                      +|++.+..+..++...+.++..++....++..    +..+ +.....+++.+...+..|...    |..+......++.+
T Consensus        17 ~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~----l~~~-~~~~~~e~~~L~~~l~~E~~~----R~~aE~~~~~ie~E   87 (154)
T 2ocy_A           17 HLEEQLNKSLKTIASQKAAIENYNQLKEDYNT----LKRE-LSDRDDEVKRLREDIAKENEL----RTKAEEEADKLNKE   87 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH----HHTH-HHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            55555555555555555555554443332222    2233 444566677787777766553    55566678888888


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339          427 AAEASMAL-ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL  476 (701)
Q Consensus       427 ~aeLseAL-aelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~  476 (701)
                      ..+|+.+| .+..+++..++.....++.+...|+..+..-...|..++.++
T Consensus        88 lEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql  138 (154)
T 2ocy_A           88 VEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQL  138 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888887 445666666665555555555555544444444444333333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.42  E-value=0.66  Score=44.52  Aligned_cols=83  Identities=20%  Similarity=0.329  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHH----HHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM----AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMA  568 (701)
Q Consensus       493 Lk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~----~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~  568 (701)
                      +..+..++...+.....++......+.++..|...+    ..|=..    -.-....++.|+..|..+|.++...++.+.
T Consensus        60 ~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~----ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq  135 (154)
T 2ocy_A           60 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVAD----ARKEKYAIEILNKRLTEQLREKDTLLDTLT  135 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556666666666666666666777777776653    000000    011357788999999999999999999888


Q ss_pred             HHHHHHHHHHH
Q 005339          569 SEKAAAEFQLE  579 (701)
Q Consensus       569 ~Er~sL~~qLE  579 (701)
                      .....|..-++
T Consensus       136 ~ql~~LK~v~~  146 (154)
T 2ocy_A          136 LQLKNLKKVMH  146 (154)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHHH
Confidence            87777665443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=94.77  E-value=3.1  Score=39.94  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005339          348 LVSSIDALKKQAALSEGNLASLQMNMESIM  377 (701)
Q Consensus       348 Le~rl~~Le~el~~~K~rleele~E~~rl~  377 (701)
                      +++.+..++..+.....++.+++.+++.+-
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~   55 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVT   55 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555554443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=94.38  E-value=0.3  Score=46.40  Aligned_cols=48  Identities=21%  Similarity=0.343  Sum_probs=35.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHH
Q 005339          509 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL  557 (701)
Q Consensus       509 ~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L  557 (701)
                      .++.++..++.++..+-+.++.|..+-+.|+ +....|+.+|+.|++.|
T Consensus        98 ~aE~k~~eLEeeL~~~~~nlKsLE~~eekas-~rE~~yee~I~~L~~kL  145 (147)
T 2b9c_A           98 LSEGKCAELEEELKTVTNNLKSLEDKVEELL-SKNYHLENEVARLKKLV  145 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH-HHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH-HHHHHHHHHHHHHHHHh
Confidence            3455666677777777777777776555544 67899999999988765

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.08  E-value=3.6  Score=37.90  Aligned_cols=100  Identities=11%  Similarity=0.034  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005339          283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS  362 (701)
Q Consensus       283 k~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~  362 (701)
                      +.+..++.....-|....++.+....|...+..|+..|..++..+...+..+. +   .......|+..+..++..+...
T Consensus        20 eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~-~---L~~~k~eLe~~l~el~~rleee   95 (129)
T 2fxo_A           20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD-Q---LIKNKIQLEAKVKEMNKRLEDE   95 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444455556777778888888888888887776665332 3   4444456666777777777777


Q ss_pred             HhHHHHHHHHHHHHHHHhhhHHHH
Q 005339          363 EGNLASLQMNMESIMRNRELTETR  386 (701)
Q Consensus       363 K~rleele~E~~rl~e~l~~~eke  386 (701)
                      ..+...+....+.+.+.+.++.+.
T Consensus        96 ee~~~~L~~~kkkle~e~~~Lk~~  119 (129)
T 2fxo_A           96 EEMNAELTAKKRKLEDECSELKRD  119 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777766666666555

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=93.96  E-value=2.4  Score=38.57  Aligned_cols=90  Identities=16%  Similarity=0.210  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Q 005339          448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE  527 (701)
Q Consensus       448 a~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e  527 (701)
                      ..+|..++..|..++++++.++.....+...             .+-.++.||..+|...+.+..+|..+|.....|...
T Consensus         5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~-------------~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~   71 (111)
T 2v66_B            5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYK-------------QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA   71 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            4567777778888888888777665444333             334578888888888888777777777777666665


Q ss_pred             HHHhhhhhhhcchhhhhHHHHHHHHHHHHHH
Q 005339          528 MAAMKRDAEHYSREEHMELEKRYRELTDLLY  558 (701)
Q Consensus       528 ~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~  558 (701)
                      -+.        .+.+-.+++++++...|.-+
T Consensus        72 ~R~--------t~~SLeD~E~k~n~aiErna   94 (111)
T 2v66_B           72 KRA--------TIVSLEDFEQRLNQAIERNA   94 (111)
T ss_dssp             HHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH--------HHhhHHHHHHHHHHHHHHHH
Confidence            422        11224566667665544433

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=93.84  E-value=4.9  Score=38.56  Aligned_cols=85  Identities=19%  Similarity=0.329  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005339          295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM  371 (701)
Q Consensus       295 LEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es---~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~  371 (701)
                      +|.-|.+-.++....+.++..|+.+|...-..+..++-   .+..+...-...|..|..++..++..+......+.+++.
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk  105 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK  105 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555566666666666666655555552   233333333344444444444444444444444444444


Q ss_pred             HHHHHHHH
Q 005339          372 NMESIMRN  379 (701)
Q Consensus       372 E~~rl~e~  379 (701)
                      +++++-+.
T Consensus       106 ~id~lEd~  113 (155)
T 2efr_A          106 SIDDLEDE  113 (155)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44443333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=93.16  E-value=5.2  Score=36.82  Aligned_cols=59  Identities=24%  Similarity=0.371  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339          415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (701)
Q Consensus       415 ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE  473 (701)
                      ++..+...|.....+|..-+..++..+++.-.....|...-.-++.++..++..|++++
T Consensus        66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555556666666666666666666666666666666666666666554

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=92.80  E-value=5.6  Score=36.21  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=44.3

Q ss_pred             hhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339          251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV  322 (701)
Q Consensus       251 kQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~  322 (701)
                      +.|-..+..|+.|++.          .+.++.....+..+.+..|+..+..+++....|...|..|+.....
T Consensus         6 rdL~~~~~~L~~E~e~----------~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD   67 (111)
T 2v66_B            6 RDLQADNQRLKYEVEA----------LKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD   67 (111)
T ss_dssp             HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            4566667777777775          6777777777777777777777777777777777777777666544

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=92.76  E-value=6.4  Score=36.82  Aligned_cols=124  Identities=22%  Similarity=0.236  Sum_probs=72.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH----HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHH
Q 005339          455 VAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAW----QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA  530 (701)
Q Consensus       455 ls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~l----keEL~~lRq~qr~le~kL~slE~elqkLr~e~~~  530 (701)
                      ++.|+.|++.++.+++.-..++.-.-+-+.++...+-||+..    +.||.++|-....+...|.       +....++ 
T Consensus        13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~-------K~~~~Lk-   84 (167)
T 4gkw_A           13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLE-------KADQLLK-   84 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHH-------HHHHHHH-
Confidence            455677777777777776666666554444444444444332    3444444433322222222       1111111 


Q ss_pred             hhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          531 MKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS  590 (701)
Q Consensus       531 Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~  590 (701)
                        +...+ ..+ ...-=+.+++|--.|.+|-+.++.|..-.-.|...||...-++.++-.
T Consensus        85 --rn~~q-QnQ-QSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~Md  140 (167)
T 4gkw_A           85 --RNSQQ-QNQ-QSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMD  140 (167)
T ss_dssp             --HHHHH-HHH-HHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --hhhHH-HhH-hhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              10000 011 122236789999999999999999999999999999987777666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.41  E-value=2.9  Score=46.56  Aligned_cols=20  Identities=5%  Similarity=-0.190  Sum_probs=7.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHh
Q 005339          361 LSEGNLASLQMNMESIMRNR  380 (701)
Q Consensus       361 ~~K~rleele~E~~rl~e~l  380 (701)
                      ..+.+.+..+.+..+..+..
T Consensus       513 ~~~~~~~~~~~~~~~~~~~~  532 (597)
T 3oja_B          513 HLKERQAFKLRETQARRTEA  532 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHhh
Confidence            33333333333333333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.88  E-value=5  Score=35.43  Aligned_cols=65  Identities=15%  Similarity=0.203  Sum_probs=49.1

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  582 (701)
Q Consensus       510 le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~  582 (701)
                      ++.+....+.++..|.+.+..+.+++        -.++.++......|..........+++..+|..+++.++
T Consensus        35 ~e~~~~~~E~ei~sL~kKiq~lE~el--------d~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE   99 (101)
T 3u59_A           35 AEDRCKQLEEEQQGLQKKLKGTEDEV--------EKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33444446667777777776666554        346678899999999999999999999999999988753

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=91.73  E-value=2.5  Score=38.55  Aligned_cols=94  Identities=14%  Similarity=0.184  Sum_probs=48.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005339          274 LARVCAGLSSRLQEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV  349 (701)
Q Consensus       274 La~~~~RLrk~~~elksr~aqLEell~el~ek----~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le  349 (701)
                      |+....+|++.+......-..||+.+.+-.+-    ...|..++..-|+.|...|..+.+.++              +.+
T Consensus        11 lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~--------------~vq   76 (112)
T 1x79_B           11 LQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR--------------DVQ   76 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence            34444555555555555556666655544443    456666777888888888888888777              344


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005339          350 SSIDALKKQAALSEGNLASLQMNMESIMRNRE  381 (701)
Q Consensus       350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~  381 (701)
                      ..+..|...-+.....|..++.+++.|..++.
T Consensus        77 ~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~~  108 (112)
T 1x79_B           77 EQMAVLMQSREQVSEELVRLQKDNDSLQGKHS  108 (112)
T ss_dssp             HHHHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence            45555566666677777778888877766543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=91.44  E-value=7.1  Score=34.58  Aligned_cols=63  Identities=11%  Similarity=0.189  Sum_probs=45.3

Q ss_pred             HhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  582 (701)
Q Consensus       512 ~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~  582 (701)
                      .+....+.++..|...+..+..++        -.++.++....+.|.+........+++..+|..+++.+.
T Consensus        37 ~~~~~~E~Ei~sL~kk~~~lE~el--------d~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE   99 (101)
T 3u1c_A           37 ERSKQLEDDIVQLEKQLRVTEDSR--------DQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333445566666666655544444        335568888899999999999999999999999988764

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.95  E-value=1.1  Score=42.00  Aligned_cols=86  Identities=16%  Similarity=0.240  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHH
Q 005339          310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTETRMI  388 (701)
Q Consensus       310 e~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl-~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeil  388 (701)
                      ...+..|..+|..++..+...+.    .....+.++++|-..+ ..++..+...+..-..++.-++.+...+.+.+.. +
T Consensus        45 ~~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~l-l  119 (135)
T 2e7s_A           45 DDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDML-L  119 (135)
T ss_dssp             HHHHHTHHHHHHHTTSHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHC-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            33555566666666665555554    2334566666666655 6666666666666666666667776666666555 6


Q ss_pred             HHHHHHHHHHHH
Q 005339          389 QALREELASVER  400 (701)
Q Consensus       389 qSLE~eLkslq~  400 (701)
                      .+++..|..|+.
T Consensus       120 ~~lq~QL~~LK~  131 (135)
T 2e7s_A          120 DTLTLQLKNLKK  131 (135)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHH
Confidence            666655555543

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=90.82  E-value=11  Score=35.37  Aligned_cols=46  Identities=13%  Similarity=0.220  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339          428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (701)
Q Consensus       428 aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE  473 (701)
                      ..|.+.+-.+.+.|+.++.++.+.---+..|.++-+.++++|..+.
T Consensus       115 e~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR  160 (167)
T 4gkw_A          115 ESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR  160 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence            4456667788888888888887777777778888888888886543

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=89.21  E-value=1.1  Score=42.06  Aligned_cols=108  Identities=14%  Similarity=0.195  Sum_probs=65.1

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005339          268 QSKEARLARVCAGLSSRLQEYKSENAQLEEL---LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSE  344 (701)
Q Consensus       268 ~~ke~qLa~~~~RLrk~~~elksr~aqLEel---l~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~e  344 (701)
                      ..+..++..++..+.....++..-...+..+   +.+.+.+....+..+..++.+|...-.+++..-+.|...   ..-+
T Consensus        21 ~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~---ar~~   97 (135)
T 2e7s_A           21 KAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVAD---ARME   97 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH---TTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence            3455556665555555444444333333333   333344566677788999999999999999888877744   4666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339          345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMR  378 (701)
Q Consensus       345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e  378 (701)
                      ...++.+...|+..+......++.++.++..|+.
T Consensus        98 ~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~  131 (135)
T 2e7s_A           98 KYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK  131 (135)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888888888888888888888887766654

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.67  E-value=21  Score=32.67  Aligned_cols=22  Identities=14%  Similarity=0.137  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 005339          388 IQALREELASVERRAEEERAAH  409 (701)
Q Consensus       388 lqSLE~eLkslq~~le~E~~aH  409 (701)
                      +..|+.+|..++..++.....|
T Consensus        84 i~~lE~eL~~~r~e~~~ql~EY  105 (129)
T 3tnu_B           84 LAELEEALQKAKQDMARLLREY  105 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHH
Confidence            4444444555554444444433

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=84.64  E-value=7.5  Score=34.06  Aligned_cols=68  Identities=15%  Similarity=0.123  Sum_probs=41.1

Q ss_pred             HhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  582 (701)
Q Consensus       512 ~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~  582 (701)
                      ++...+|.+...|..+|..++.+-   ++.....|+.-|..|+..+......-..+..|+..|...++.+.
T Consensus        23 dKVR~LEqqN~~Le~~i~~l~~~~---~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k   90 (93)
T 3s4r_A           23 DKVRFLEQQNKILLAELEQLKGQG---KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR   90 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456777777777776665421   22334567788888876666666655556666665555555543

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=84.03  E-value=9.7  Score=41.26  Aligned_cols=25  Identities=16%  Similarity=0.434  Sum_probs=12.9

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhh
Q 005339          508 RDAENKLSSLEAEVQKMRVEMAAMK  532 (701)
Q Consensus       508 r~le~kL~slE~elqkLr~e~~~Lk  532 (701)
                      .+++..|..++.+++.++.++++++
T Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~  470 (471)
T 3mq9_A          446 EELEGEITTLNHKLQDASAEVERLR  470 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444455555555555555555443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=84.01  E-value=12  Score=35.73  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339          309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (701)
Q Consensus       309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (701)
                      +.+.+..|+.++...+..+.+++..+.    .|+..++.|.+++.+|+-++..+..++.+++.|++.|-++.=.
T Consensus        66 ~~~~I~~L~~El~~l~~ki~dLeeel~----eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~  135 (152)
T 3a7p_A           66 LLNTLAILQKELKSKEQEIRRLKEVIA----LKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK  135 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344666777777776666666665333    4677888899999999999999999999999998777666544

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=83.48  E-value=17  Score=30.78  Aligned_cols=29  Identities=7%  Similarity=0.149  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339          351 SIDALKKQAALSEGNLASLQMNMESIMRN  379 (701)
Q Consensus       351 rl~~Le~el~~~K~rleele~E~~rl~e~  379 (701)
                      +...++.++.....+...++.++..++.+
T Consensus        21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kK   49 (81)
T 1ic2_A           21 RAEQAEADKKAAEERSKQLEDELVALQKK   49 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33333333333333333333333333333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.35  E-value=23  Score=32.31  Aligned_cols=12  Identities=17%  Similarity=0.003  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q 005339          398 VERRAEEERAAH  409 (701)
Q Consensus       398 lq~~le~E~~aH  409 (701)
                      .+-+|+.|+..|
T Consensus       111 vKl~Ld~EIatY  122 (129)
T 3tnu_B          111 TKLALDVEIATY  122 (129)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333344444433

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.13  E-value=20  Score=32.93  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 005339          388 IQALREELASVERRAEEERAA  408 (701)
Q Consensus       388 lqSLE~eLkslq~~le~E~~a  408 (701)
                      +..|+.+|..++..++.....
T Consensus        86 i~~lE~eL~~~r~em~~ql~E  106 (131)
T 3tnu_A           86 IGSVEEQLAQLRCEMEQQNQE  106 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444443333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=82.88  E-value=25  Score=31.23  Aligned_cols=67  Identities=18%  Similarity=0.237  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005339          311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRE  381 (701)
Q Consensus       311 ~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl-~~Le~el~~~K~rleele~E~~rl~e~l~  381 (701)
                      ..+..|..+|..++..+...+.    .....+.++++|-..| ..++..+...+..-..++.-+++|...+.
T Consensus        26 ~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~   93 (97)
T 2eqb_B           26 DEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR   93 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444455555555554444443    2233455555555544 55555555555444445555555544443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.86  E-value=29  Score=32.46  Aligned_cols=18  Identities=22%  Similarity=0.506  Sum_probs=8.9

Q ss_pred             HHHHHHHhhhhHHHHHHH
Q 005339          272 ARLARVCAGLSSRLQEYK  289 (701)
Q Consensus       272 ~qLa~~~~RLrk~~~elk  289 (701)
                      .-|..++.-+.++..+++
T Consensus        28 e~L~~vA~~vd~km~ei~   45 (138)
T 3hnw_A           28 EYLQRVASYINNKITEFN   45 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344445555555555544

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.78  E-value=23  Score=32.46  Aligned_cols=12  Identities=42%  Similarity=0.423  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHH
Q 005339          398 VERRAEEERAAH  409 (701)
Q Consensus       398 lq~~le~E~~aH  409 (701)
                      .+-+|+.|+..|
T Consensus       113 vKl~Ld~EIatY  124 (131)
T 3tnu_A          113 VKTRLEQEIATY  124 (131)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333444444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.08  E-value=13  Score=34.68  Aligned_cols=51  Identities=16%  Similarity=0.198  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005339          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASV  398 (701)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLksl  398 (701)
                      .|+..+..+..++..+|..+..++...+.+..++..+.++ +..|+.++..+
T Consensus        79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~-~~~l~~~~~~l  129 (138)
T 3hnw_A           79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE-INKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            3444444444444444444444444444444444444333 33444334443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=81.47  E-value=15  Score=31.76  Aligned_cols=69  Identities=10%  Similarity=0.171  Sum_probs=45.7

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ  586 (701)
Q Consensus       510 le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~  586 (701)
                      |+.||...=+.++-|+-++.+||..        ...+.....+++..-..+....+.|..|++++.-+|..+.-+.+
T Consensus        11 LE~KIq~avdtI~lLqmEieELKek--------N~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e   79 (81)
T 2jee_A           11 LEAKVQQAIDTITLLQMEIEELKEK--------NNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4555555555666666666666643        24445556666666666777888888888888888887776543

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=81.36  E-value=11  Score=35.89  Aligned_cols=46  Identities=13%  Similarity=0.244  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~  589 (701)
                      +.++.+|..|.+.|.+|...++.+.+|..+|.+++..++.+++..+
T Consensus        78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq  123 (152)
T 3a7p_A           78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK  123 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566788999999999999999999999999999999887776654

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=81.09  E-value=21  Score=32.50  Aligned_cols=77  Identities=12%  Similarity=0.119  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339          306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (701)
Q Consensus       306 ~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (701)
                      ...|+..+.+|..+|..+...+..++....+.-+.=..+++.|...++..+..+..+......++.+...-+..+..
T Consensus         8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~   84 (112)
T 1x79_B            8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ   84 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666777777777777777777655555555566777777777777777777777777666654443333333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=81.03  E-value=27  Score=30.67  Aligned_cols=39  Identities=18%  Similarity=0.294  Sum_probs=24.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  582 (701)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~  582 (701)
                      ..|=+.++.+.-++++.+....++.....--..+|+++.
T Consensus        56 ~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~   94 (96)
T 3q8t_A           56 AQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK   94 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445555667766677666666666666666666666643

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=80.67  E-value=19  Score=30.38  Aligned_cols=47  Identities=6%  Similarity=0.120  Sum_probs=30.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339          340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (701)
Q Consensus       340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (701)
                      ..+....+|++++..++..+...+.+-..+..++.++++-+.-+-.+
T Consensus        11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~e   57 (72)
T 3cve_A           11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFE   57 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            34445556777777777777777777777777777766665555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00