Citrus Sinensis ID: 005342

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-
Protein Sequence
MHGSKMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHIMFVQIVVKFHSFKFFYVAVGA
Secondary Structure (PSIPRED)
ccccccEEcccccHHHHHHHHHHHHHccHHHHHHHHHHHHcccEEHHHHHHHHHcccHHHHHHHHHccccccccccccEEEEEEEcHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccEEcccccccccccEEEccccccccccccccEEEEccccccccEEcccccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEEEccccccEEEEccccccccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccEEEEEEcccccEEEEEEccccccEEEEEEEEcccEEEEEccccEEEEEcccccEEEEcccccccEEEEEEccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEcccccccccccEEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccEEEccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccEEcHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHccHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccEEcHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEEEEEcccccEEEEEccccccccHEEEEEEcccccEEEEEccccEEEEEEEccccccccccccccccccccccccEEEEcccccccccEEEEEEccccEEEEEcccEEEEEEccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEEccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEEEcccccccccccccEEEEEccccEEEEEEEccEEEEEEccccHHEEEEEEEEccEEEEEEEEEcccccEEEcccc
Coil and Loop (DISEMBL)
mhgskmcidkdTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFtklddsnhsKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLreneqlsgytnatsSRAKLIDSLKLLVKENRIlqdklifpcvnnsaLSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNmndntysaKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVernpmlqdklkfpsmdKSRLLSLIKQIMDWWVPYcinvmpnannetislkdfptvsnlryassiltdkpnqegrpldassgddsndsscfndnnqsrestslpdadsAVCAKSLEKSVNLKLQLinepsecrtlllpdnsfggRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNmesqlyqpssklvmtndiaadpkdsiscfalrgshlfsasggkisifSLETFQtlatfanpppiatyfillpqdlfafgfddssilvhcpctkktkaklkghqnriTCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSfqtglvpettIVNHIQFHPDQIHLLsihegqidvyeaptlnhtSQVLLISHIMFVQIVVKFHSFKFFYVAVGA
Flexible Loop (DISEMBL)
mhgskmcidkdtyTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHErteadsifrkdLKVFSVSQNRIDCELAELLALKDLRENEQlsgytnatssrakLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERnpmlqdklkfpsmDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASsiltdkpnqegRPLDASSGDDSNDSSCFNDNNQsrestslpdaDSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKtkaklkghqnRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHIMFVQIVVKFHSFKFFYVAVGA
Low Complexity Region (SEG)
MHGSKMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLdassgddsndsscfndnnqsRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHIMFVQIVVKFHSFKFFYVAVGA
Disordered region (IsUnstruct)
******CIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVD******SDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYA*******************************************************SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ*****************************IA***KDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHIMFVQIVVKFHSFKFFYVAV**
Disordered Region (DISOPRED)
**********DTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENE*************KLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHIMFVQIVVKFHSFKFFYVAVG*
Disordered Region (DISEMBL)
MHGSKMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKP**************************************AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHIMFVQIVVKFHSFKFFYVAVGA
Disordered Region (DISPRO)
****KMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSN****S****************************************PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN******ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHIMFVQIVVKFHSFKFFYVAVG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHGSKMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKxxxxxxxxxxxxxxxxxxxxxLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHIMFVQIVVKFHSFKFFYVAVGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	701	2.2.26 [Sep-21-2011]
Q27GK7	1135	Topless-related protein 4	no	no	0.392	0.242	0.480	9e-65
Q0WV90	1120	Topless-related protein 1	no	no	0.386	0.241	0.446	3e-61
Q94AI7	1131	Protein TOPLESS OS=Arabid	no	no	0.413	0.256	0.420	2e-60
Q9LRZ0	1131	Topless-related protein 2	no	no	0.355	0.220	0.412	1e-49
Q84JM4	1108	Topless-related protein 3	no	no	0.353	0.223	0.386	7e-46
Q06078	939	U3 small nucleolar RNA-as	yes	no	0.128	0.095	0.3	0.0003
Q54S79	942	WD repeat-containing prot	no	no	0.245	0.182	0.243	0.0005
Q5SP67	576	WD repeat-containing prot	yes	no	0.198	0.241	0.292	0.0005

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score =  248 bits (634), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 136/283 (48%), Positives = 180/283 (63%), Gaps = 8/283 (2%)

Query: 397  ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456
            ++ SLPD    + A   EKS   KL  I+E S+ RTL LPD     RVV+LIY++SG  +
Sbjct: 735  DNRSLPDVKPRI-ADDAEKSKTWKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAI 793

Query: 457  VALTQTATHKLWKWQ-SNKQSLEEENVNMESQLYQPSSKLVMTNDI-AADPKDSISCFAL 514
            +AL + A HKLWKWQ S +  L + N N+  QL+QPSS ++MTND    + +D + CFAL
Sbjct: 794  LALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVLMTNDTREGNKEDVVPCFAL 853

Query: 515  --RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 570
                S++ SASGGKIS+F++ TF+T+ TF  PPP AT     PQD  + A G DDSSI +
Sbjct: 854  SKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQI 913

Query: 571  HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630
            +     + K+KLKGHQ R+T LA+S  LNVLVSSGAD+QLCVW   GW+K  SK +    
Sbjct: 914  YNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQ-IP 972

Query: 631  TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 673
            +G  P       +QFH DQIH+L +H  Q+ +YEAP L +  Q
Sbjct: 973  SGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQ 1015

Transcriptional corepressor. Negative regulator of jasmonate responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score =  237 bits (604), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 124/278 (44%), Positives = 180/278 (64%), Gaps = 7/278 (2%)

Query: 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456
           +S ++ D    +  +S +KS   KL  + EPS+CR+L LP+N    ++ RLI+++SG+ +
Sbjct: 713 DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIFTNSGNAI 772

Query: 457 VALTQTATHKLWKWQSN-KQSLEEENVNMESQLYQPSSKLVMTNDIA-ADPKDSISCFAL 514
           +AL   A H LWKWQ N + +  +   ++  Q +QP+S ++MTND+A  +P++++ CFAL
Sbjct: 773 LALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFAL 832

Query: 515 --RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 570
               S++ SASGGKIS+F++ TF+T+ATF  PPP AT+    PQD  + A G DDS+I +
Sbjct: 833 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQI 892

Query: 571 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630
           +     + K+KLKGH  RIT LA+S  LNVLVSSGADAQLCVW+  GW+K  SK L   Q
Sbjct: 893 YNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQ 952

Query: 631 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 668
            G    +     +QFH DQ+H L +HE Q+ +YE   L
Sbjct: 953 -GRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKL 989

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score =  234 bits (597), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 185/297 (62%), Gaps = 7/297 (2%)

Query: 378  SSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD 437
            S+G     ++  +    + +S ++ D    +  +S +KS   KL  ++EPS+CR+L LP+
Sbjct: 705  SAGHADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPE 764

Query: 438  NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN-KQSLEEENVNMESQLYQPSSKLV 496
            N    ++ RLI+++SG+ ++AL   A H LWKWQ N + +  +   ++  Q +QP+S ++
Sbjct: 765  NLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGIL 824

Query: 497  MTNDIA-ADPKDSISCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFIL 553
            MTND+A  +P++++ CFAL    S++ SASGGKIS+F++ TF+T+ATF  PPP AT+   
Sbjct: 825  MTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 884

Query: 554  LPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 611
             PQD  + A G DDS+I ++     + K+KLKGH  RIT LA+S  LNVLVSSGADAQLC
Sbjct: 885  HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944

Query: 612  VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 668
            VW+  GW+K  SK L     G          +QFH DQ H L +HE Q+ +YE   L
Sbjct: 945  VWNTDGWEKQRSKVL-PLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKL 1000

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score =  198 bits (503), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/262 (41%), Positives = 160/262 (61%), Gaps = 13/262 (4%)

Query: 412 SLEKSVNLKLQLINEPSECRTLLLPDNSFG-GRVVRLIYSHSGDFLVALTQTATHKLWKW 470
           S++KS  L+L  I +P++CR + +PD+     +V RL+Y++SG  ++AL      +LWKW
Sbjct: 735 SVDKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKW 794

Query: 471 QSNKQS-LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--RGSHLFSASGGKI 527
             N+Q+   +   ++  Q +QP+S L+M ND+  +P+ S+ C AL    S++ SA GGK+
Sbjct: 795 IRNEQNPTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCIALSKNDSYVMSACGGKV 854

Query: 528 SIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH 585
           S+F++ TF+ + TF  PPP +T+    PQD  + A G +DSSI ++     + K KLKGH
Sbjct: 855 SLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGH 914

Query: 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN--HI 643
           Q  IT LA+S +LN+LVSSGADAQL  W A  W+K  S  +      L P    V    +
Sbjct: 915 QKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQ-----LPPGKAPVGDTRV 969

Query: 644 QFHPDQIHLLSIHEGQIDVYEA 665
           QFH DQI LL  HE Q+ +Y+A
Sbjct: 970 QFHNDQIQLLVSHETQLAIYDA 991

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score =  186 bits (471), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 102/264 (38%), Positives = 161/264 (60%), Gaps = 16/264 (6%)

Query: 412 SLEKSVNLKLQLINEPSECRTLLLPDNSFGG-RVVRLIYSHSGDFLVALTQTATHKLWKW 470
           S +K  + +L  I +PS+C    LPD +    +VV+L+Y++SG  ++AL      +LWKW
Sbjct: 723 STDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSGAGILALGSNGIQRLWKW 782

Query: 471 QSNKQSLE-EENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFAL--RGSHLFSASGGK 526
             N+Q+   +    +  Q +QP+S L+MTND++  + +++  C AL    S++ SA+GGK
Sbjct: 783 VPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPCIALSKNDSYVMSAAGGK 842

Query: 527 ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG 584
           +S+F++ TF+ + TF  PPP +T+    PQD  + A G +DS+I ++     + K+KLKG
Sbjct: 843 VSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGMEDSTIHIYNVRVDEVKSKLKG 902

Query: 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN--- 641
           HQ RIT LA+S +LN+LVSSGADAQ+C W    W+K  S  +       +P     N   
Sbjct: 903 HQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQ------MPAGKAANGDT 956

Query: 642 HIQFHPDQIHLLSIHEGQIDVYEA 665
            +QFH DQ+ +L +HE Q+ V++A
Sbjct: 957 RVQFHVDQLRILVVHETQLAVFDA 980

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q06078|UTP21_YEAST U3 small nucleolar RNA-associated protein 21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP21 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 38/90 (42%)

Query: 525 GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 584
           G +  +       L       PI         DLFA   DD SI+V    T++   +L G
Sbjct: 524 GIVGFYDFNKSTLLGKLKLDAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWG 583

Query: 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWD 614
           H NRIT   +S     +VS+  D+ +  WD
Sbjct: 584 HSNRITAFDFSPEGRWIVSASLDSTIRTWD 613

Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54S79|WDR3_DICDI WD repeat-containing protein 3 homolog OS=Dictyostelium discoideum GN=wdr3 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 29/201 (14%)

Query: 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSA-SGGKIS 528
           W   KQ L +        LY+   K  +TN           C +  G+ L S  S G I 
Sbjct: 42  WDLRKQVLNQ-------SLYEEDIKAEVTN----------VCLSKDGALLASGYSDGSIR 84

Query: 529 IFSLETFQTLATF-ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN 587
           I+S+  +Q  A F  +   + T       ++   G  D+ ++V    T+    +L+GH++
Sbjct: 85  IWSMSDYQLQAVFNGHRGSVTTMTFNRLGNILVSGSKDTEVIVWDIITESGLFRLRGHRD 144

Query: 588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647
           +IT +      N L++S  D  + +WD        ++  H  QT +V     +  I  +P
Sbjct: 145 QITSVKLLERSNHLITSSKDGFIKIWD--------TETQHCIQT-IVGHRNPIWGIDVNP 195

Query: 648 DQIHLLS-IHEGQIDVYEAPT 667
           D+  L S   + QI  +  P+
Sbjct: 196 DETRLCSCTSDNQIRFWRIPS 216

Dictyostelium discoideum (taxid: 44689)

>sp|Q5SP67|WDR26_DANRE WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 16  LITLIMKFLEEENFKESLQALEQESKIFF---NVHRFGEIVMNGEWEKAEKYLSAFTKLD 72
           +I LI + L      +++  L QES       +  +F   VM GEW+KAE  L+    L 
Sbjct: 55  VIRLIGQHLHGLGLNQTVDLLMQESGCRLEHSSATKFRNHVMEGEWDKAENDLNELKALM 114

Query: 73  DS-NHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA--L 129
            S N   +M F L + KY E L   +  EA  + R +L     + +RI      L+    
Sbjct: 115 HSPNAIVRMKFLLLQQKYLEYLEDGKVLEALQVLRGELTPLKYNTDRIHVLSGYLMCSHA 174

Query: 130 KDLRENEQLSGYTNATSSRAKLIDSLK 156
           +DL+   +  G      SR +L+D L+
Sbjct: 175 EDLKAKAEWEG--KGAGSRCRLLDKLQ 199

May be involved in MAPK pathways.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
297821939	749	hypothetical protein ARALYDRAFT_901180 [	0.880	0.823	0.426	1e-141
145360312	740	transducin family protein / WD-40 repeat	0.855	0.810	0.396	1e-118
20197750	730	hypothetical protein [Arabidopsis thalia	0.827	0.794	0.379	1e-110
224087108	1132	predicted protein [Populus trichocarpa]	0.463	0.287	0.450	3e-69
224142595	1126	predicted protein [Populus trichocarpa]	0.386	0.240	0.503	6e-68
356562983	1134	PREDICTED: topless-related protein 4-lik	0.389	0.240	0.498	7e-68
356546114	1232	PREDICTED: topless-related protein 4-lik	0.389	0.221	0.494	1e-67
255572487	1134	WD-repeat protein, putative [Ricinus com	0.396	0.245	0.496	1e-67
449443059	1134	PREDICTED: topless-related protein 4-lik	0.385	0.238	0.496	3e-67
449517894	623	PREDICTED: topless-related protein 4-lik	0.385	0.433	0.496	3e-67

>gi|297821939|ref|XP_002878852.1| hypothetical protein ARALYDRAFT_901180 [Arabidopsis lyrata subsp. lyrata] gi|297324691|gb|EFH55111.1| hypothetical protein ARALYDRAFT_901180 [Arabidopsis lyrata subsp. lyrata]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 288/675 (42%), Positives = 404/675 (59%), Gaps = 58/675 (8%)

Query: 6   MCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYL 65
           M +D+    +L+ LI++F +EE ++ESL  LEQ+S++FF+   F   ++NG +++A+ YL
Sbjct: 1   MILDEKNRKNLVFLILQFFDEEGYEESLHLLEQDSRVFFDFSYFSNAILNGNFKEADDYL 60

Query: 66  SAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAE 125
            AFT+ + + +S+KMFF+L K K  EA  R   +EA SIF KDL+   V ++    +L E
Sbjct: 61  LAFTRPEANTYSRKMFFDLFKRKLSEAPDRSGGSEAVSIFSKDLRRIPVLKDDSFDDLVE 120

Query: 126 LLALKDLRENEQLSGY--TNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLI 183
           ++A+ D+R+   L G    +    RAKL   L  L + N  L DKL FP +N SAL SLI
Sbjct: 121 VIAVDDMRQG-ILEGTCCVDKVPGRAKLCVDLHKLAESNPCLCDKLEFPSLNKSALLSLI 179

Query: 184 KLICPSFEKET---KEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEW 240
            LICP+        KE+LI LI QFL E ++K TLHKLEQET+VFF++NY  E +  GE+
Sbjct: 180 SLICPNCSGRNGGLKEDLICLILQFLYEAKYKNTLHKLEQETKVFFNLNYLAEVMKLGEY 239

Query: 241 DNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPS----DFAERAHLFDDFK 296
             AE+YL AFT+  DN YS  MF +IQ+   L++ + +   PS    + + +  L     
Sbjct: 240 GKAEEYLGAFTDSKDNKYSKAMFLEIQKLTCLQSTEWEVATPSGSLDNMSPKIKLHASVA 299

Query: 297 VLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSN 356
           +L ++NP+L+DKLKFPSM+KSRLL+L+KQ MDWW            N + SL++ P VS 
Sbjct: 300 MLAKKNPVLKDKLKFPSMEKSRLLTLMKQTMDWWT-------SRTCNNSSSLENVPVVSY 352

Query: 357 LRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKS 416
           L      L  K N+ G+                                        +K 
Sbjct: 353 LCGTPFSLKKKFNKTGQ---------------------------------------RKKV 373

Query: 417 VNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 476
           VN K   IN+PS+C  L+LPD      + RL YS SGD+++AL + ATHKLW W S++  
Sbjct: 374 VNYKPNEINDPSQCNALVLPDYFSEEMIARLTYSPSGDYILALAEDATHKLWTWSSSQNE 433

Query: 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQ 536
             +ENV  + +L+QP S   M N++AA  ++S SCFA++GS+LFS SGGKI++F L++F+
Sbjct: 434 FSKENVFPKPRLHQPQSGKTMKNEMAASVQNSTSCFAIKGSYLFSTSGGKIAVFDLKSFE 493

Query: 537 TLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 596
            +A F +P P+ATYFI +P DL A G DD SI +HC  ++K K KL+GH  +ITCLA+S 
Sbjct: 494 KVAAFGSPTPMATYFIFIPGDLLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSR 553

Query: 597 SLNVLVSSGADAQLCVWDAVGWKKLCSK-FLHSFQTGLVPE-TTIVNHIQFHPDQIHLLS 654
             NVLVSS +D +LC+W    W KL SK     F T    E T++V HIQF P QI LL 
Sbjct: 554 CFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCTRSNHESTSLVTHIQFDPYQIELLV 613

Query: 655 IHEGQIDVYEAPTLN 669
           +HEG I +YEA TL+
Sbjct: 614 VHEGWIGIYEARTLD 628

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145360312|ref|NP_565594.3| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] gi|110741678|dbj|BAE98785.1| hypothetical protein [Arabidopsis thaliana] gi|330252606|gb|AEC07700.1| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 271/683 (39%), Positives = 384/683 (56%), Gaps = 83/683 (12%)

Query: 6   MCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYL 65
           M +D+    +L+ LI++F +EE ++ESL  LEQ+S +FF+       ++NG W+ A+ YL
Sbjct: 1   MILDEKNRKNLVFLILQFFDEEGYEESLHLLEQDSGVFFDFSYLSNAILNGNWKDADDYL 60

Query: 66  SAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAE 125
           SAFT  + +  S+KMFF L K K+ EA  R   +EA  IF KDL+   V ++    +L E
Sbjct: 61  SAFTSPEANTFSRKMFFGLFKLKFSEAPDRSGGSEAVKIFSKDLRRIPVLKDDSFDDLVE 120

Query: 126 LLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKL 185
           ++A+ D+R  E+      A   RAKL   L  L + N  L+ KL FP +N SAL +LI L
Sbjct: 121 VIAVDDMRIPEETCCVDKA-PGRAKLCVDLHKLAESNPSLRGKLDFPSLNKSALLALISL 179

Query: 186 ICPSFEKET---KEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDN 242
           +CP+  +     KE+LI LI QFL E ++K TLHKLEQET+VFF++NY  E +  GE+  
Sbjct: 180 LCPNCSRRKGGLKEDLICLILQFLYEAKYKNTLHKLEQETKVFFNLNYLAEVMKLGEYGK 239

Query: 243 AEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPS----DFAERAHLFDDFKVL 298
           AE+YL AFTN  DN YS  MF ++Q+   L++ + +   PS    + + +  L     +L
Sbjct: 240 AEEYLGAFTNWEDNKYSKAMFLELQKLICLQSTEWEVATPSGSLDNMSLKIKLHASVAML 299

Query: 299 VERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLR 358
            ++NP+L+D+LKFPSM+KSRLL+L+KQ MDWW   C        N T SL++ P VS L 
Sbjct: 300 AKKNPVLKDELKFPSMEKSRLLTLVKQTMDWWT--C--------NNTSSLENVPVVSYLC 349

Query: 359 YASSIL----------TDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAV 408
              S +            KPN+   P           S C         +  LPD  S  
Sbjct: 350 GTPSSMKFFFKKTVPRKKKPNEIKDP-----------SQC--------NALVLPDCFS-- 388

Query: 409 CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468
                E+ +    +L   PS    L L +++                        THKLW
Sbjct: 389 -----EEKI---ARLTYSPSGDYILALAEDA------------------------THKLW 416

Query: 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKIS 528
            W S++    +ENV  + +L+QP S   M N++A   + S SCFA++GS+LFS SGGKI+
Sbjct: 417 TWSSSQNEFCKENVYPKPRLHQPQSGKTMENEMATSVQKSTSCFAVKGSYLFSTSGGKIA 476

Query: 529 IFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 588
           +F L+ F+ +A+F +P P+ATYFI +P DL A G DD SI +HC  ++K K KL+GH  +
Sbjct: 477 VFDLKNFEKVASFGSPTPMATYFIFIPGDLLAVGLDDGSIFIHCLSSRKVKEKLEGHDQK 536

Query: 589 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-FLHSF-QTGLVPETTIVNHIQFH 646
           ITCLA+S   NVLVSS +D +LC+W    W KL SK     F     +  T++V HIQF 
Sbjct: 537 ITCLAFSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFD 596

Query: 647 PDQIHLLSIHEGQIDVYEAPTLN 669
           P QI LL +H+G I +YE  TL+
Sbjct: 597 PYQIELLVVHDGWIGLYEVRTLD 619

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20197750|gb|AAD20702.2| hypothetical protein [Arabidopsis thaliana]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 263/693 (37%), Positives = 376/693 (54%), Gaps = 113/693 (16%)

Query: 6   MCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYL 65
           M +D+    +L+ LI++F +EE ++ESL  LEQ+S +FF+       ++NG W+ A+ YL
Sbjct: 1   MILDEKNRKNLVFLILQFFDEEGYEESLHLLEQDSGVFFDFSYLSNAILNGNWKDADDYL 60

Query: 66  SAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAE 125
           SAFT  + +  S+KMFF L K    EA+          IF KDL+   V ++    +L E
Sbjct: 61  SAFTSPEANTFSRKMFFGLFKSGGSEAV---------KIFSKDLRRIPVLKDDSFDDLVE 111

Query: 126 LLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKL 185
           ++A          +   +    RAKL   L  L + N  L+ KL FP +N SAL +LI L
Sbjct: 112 VIAE---------TCCVDKAPGRAKLCVDLHKLAESNPSLRGKLDFPSLNKSALLALISL 162

Query: 186 ICPSFEKET---KEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDN 242
           +CP+  +     KE+LI LI QFL E ++K TLHKLEQET+VFF++NY  E +  GE+  
Sbjct: 163 LCPNCSRRKGGLKEDLICLILQFLYEAKYKNTLHKLEQETKVFFNLNYLAEVMKLGEYGK 222

Query: 243 AEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPS----DFAERAHLFDDFKVL 298
           AE+YL AFTN  DN YS  MF ++Q+   L++ + +   PS    + + +  L     +L
Sbjct: 223 AEEYLGAFTNWEDNKYSKAMFLELQKLICLQSTEWEVATPSGSLDNMSLKIKLHASVAML 282

Query: 299 VERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLR 358
            ++NP+L+D+LKFPSM+KSRLL+L+KQ MDWW   C        N T SL++ P VS L 
Sbjct: 283 AKKNPVLKDELKFPSMEKSRLLTLVKQTMDWWT--C--------NNTSSLENVPVVSYLC 332

Query: 359 YASSIL----------TDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAV 408
              S +            KPN+   P           S C         +  LPD  S  
Sbjct: 333 GTPSSMKFFFKKTVPRKKKPNEIKDP-----------SQC--------NALVLPDCFS-- 371

Query: 409 CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468
                E+ +    +L   PS    L L +++                        THKLW
Sbjct: 372 -----EEKI---ARLTYSPSGDYILALAEDA------------------------THKLW 399

Query: 469 KWQSNKQ-------SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 521
            W S++         + +ENV  + +L+QP S   M N++A   + S SCFA++GS+LFS
Sbjct: 400 TWSSSQNEFCKYTPKILKENVYPKPRLHQPQSGKTMENEMATSVQKSTSCFAVKGSYLFS 459

Query: 522 ASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK 581
            SGGKI++F L+ F+ +A+F +P P+ATYFI +P DL A G DD SI +HC  ++K K K
Sbjct: 460 TSGGKIAVFDLKNFEKVASFGSPTPMATYFIFIPGDLLAVGLDDGSIFIHCLSSRKVKEK 519

Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-----KFLHSFQTGLVPE 636
           L+GH  +ITCLA+S   NVLVSS +D +LC+W    W KL S     KF +      +  
Sbjct: 520 LEGHDQKITCLAFSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSN---LES 576

Query: 637 TTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 669
           T++V HIQF P QI LL +H+G I +YE  TL+
Sbjct: 577 TSLVTHIQFDPYQIELLVVHDGWIGLYEVRTLD 609

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087108|ref|XP_002308068.1| predicted protein [Populus trichocarpa] gi|222854044|gb|EEE91591.1| predicted protein [Populus trichocarpa]

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 154/342 (45%), Positives = 211/342 (61%), Gaps = 17/342 (4%)

Query: 341  ANNETISLKDFPTVSNLRY------ASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN-- 392
            AN++ I L    TV N  +      ++S++   P     P +A  G   +D +       
Sbjct: 667  ANSDGIRL--LRTVENRTFDASRAASASVVKPPPIGNFSPANAPVGTSGDDQAALAAPMV 724

Query: 393  NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 452
              + +S SL D    +  +S+EKS   KL  INEPS+CR+L LPD+    RV RLIY++S
Sbjct: 725  GMNSDSRSLVDVKPKIQDESVEKSRIWKLTEINEPSQCRSLRLPDSLTSMRVSRLIYTNS 784

Query: 453  GDFLVALTQTATHKLWKWQSN-KQSLEEENVNMESQLYQPSSKLVMTNDIA-ADPKDSIS 510
            G  ++AL   A HKLWKWQ N +    + N ++  QL+QPSS ++MTNDI+  +P+D++ 
Sbjct: 785  GVAILALASNAVHKLWKWQRNDRNPSGKANASVPPQLWQPSSGILMTNDISDTNPEDAVP 844

Query: 511  CFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS 566
            CFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +DS
Sbjct: 845  CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATFLAFHPQDNNIIAIGMEDS 904

Query: 567  SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 626
            SI ++     + K KLKGHQ RIT LA+S SLNVLVSSGAD+QLCVW    W+K  SKFL
Sbjct: 905  SIQIYNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADSQLCVWSTDAWEKQASKFL 964

Query: 627  HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 668
                +G V  +     +QFH DQIHLL++HE QI ++EAP L
Sbjct: 965  Q-IPSGRVAPSLADTRVQFHLDQIHLLAVHETQIAIFEAPKL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142595|ref|XP_002324641.1| predicted protein [Populus trichocarpa] gi|222866075|gb|EEF03206.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (677), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 140/278 (50%), Positives = 188/278 (67%), Gaps = 7/278 (2%)

Query: 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456
           ++ SL D    +  +S+EKS   KL  INEPS+CR+L LPD+    RV RLI+++SG  +
Sbjct: 723 DNRSLVDVKPKIQDESIEKSRIWKLTEINEPSQCRSLRLPDSLTAMRVSRLIFTNSGVAI 782

Query: 457 VALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIA-ADPKDSISCFAL 514
           +AL   A HKLWKWQ N ++L  +   ++  QL+QPSS ++MTNDI+  +P+D++ CFAL
Sbjct: 783 LALASNAVHKLWKWQRNDRNLPGKATASVPPQLWQPSSGILMTNDISDTNPEDAVPCFAL 842

Query: 515 --RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 570
               S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +DSSI +
Sbjct: 843 SKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATFLAFHPQDNNIIAIGMEDSSIQI 902

Query: 571 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630
           +     + K KLKGHQ RIT LA+S SLNVLVSSGAD+QLCVW    W+K  SKFL    
Sbjct: 903 YNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADSQLCVWSTDAWEKQASKFLQ-IP 961

Query: 631 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 668
           TG V  +     +QFH DQIHLL++HE QI ++EAP L
Sbjct: 962 TGRVASSLADTRVQFHLDQIHLLAVHETQIAIFEAPKL 999

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562983|ref|XP_003549747.1| PREDICTED: topless-related protein 4-like [Glycine max]

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 141/283 (49%), Positives = 188/283 (66%), Gaps = 10/283 (3%)

Query: 392  NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 451
            NN +R   +L D    +  +S+EKS   KL  INEPS+CR+L LPD+    RV RLIY++
Sbjct: 731  NNDTR---NLADVKPRIVDESVEKSRIWKLTEINEPSQCRSLKLPDSLSSMRVSRLIYTN 787

Query: 452  SGDFLVALTQTATHKLWKWQSN-KQSLEEENVNMESQLYQPSSKLVMTNDIA-ADPKDSI 509
             G  ++AL   A HKLWKWQ N + +  +   +++ QL+QPSS ++MTNDI+  +P+D++
Sbjct: 788  QGVAILALAANAVHKLWKWQRNERNTTGKATASIQPQLWQPSSGILMTNDISDTNPEDAV 847

Query: 510  SCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 565
            SCFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +D
Sbjct: 848  SCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 907

Query: 566  SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625
            SSI ++     + K KLKGHQ RIT LA+S  LNVLVSSGAD+QLCVW   GW+K  SKF
Sbjct: 908  SSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNVLVSSGADSQLCVWSTDGWEKQASKF 967

Query: 626  LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 668
            L    +G  P       +QFH DQ HLL++HE QI +YEAP L
Sbjct: 968  LQ-MPSGRPPAPLADTRVQFHLDQTHLLAVHETQIALYEAPKL 1009

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546114|ref|XP_003541476.1| PREDICTED: topless-related protein 4-like [Glycine max]

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/283 (49%), Positives = 188/283 (66%), Gaps = 10/283 (3%)

Query: 392  NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 451
            NN +R   +L D    +  +++EKS   KL  INEPS+CR+L LPD+    RV RLIY++
Sbjct: 829  NNDTR---NLADVKPRIVDEAVEKSRIWKLTEINEPSQCRSLKLPDSLSSMRVSRLIYTN 885

Query: 452  SGDFLVALTQTATHKLWKWQSN-KQSLEEENVNMESQLYQPSSKLVMTNDIA-ADPKDSI 509
             G  ++AL   A HKLWKWQ N + +  +   +++ QL+QPSS ++MTNDI+  +P+D++
Sbjct: 886  QGVAILALAANAVHKLWKWQRNERNTTGKATASIQPQLWQPSSGILMTNDISDTNPEDAV 945

Query: 510  SCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 565
            SCFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +D
Sbjct: 946  SCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 1005

Query: 566  SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625
            SSI ++     + K KLKGHQ RIT LA+S  LNVLVSSGAD+QLCVW   GW+K  SKF
Sbjct: 1006 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNVLVSSGADSQLCVWSTDGWEKQASKF 1065

Query: 626  LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 668
            L    +G  P       +QFH DQ HLL++HE QI +YEAP L
Sbjct: 1066 LQ-MPSGRPPAPLADTRVQFHLDQTHLLAVHETQIALYEAPKL 1107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572487|ref|XP_002527178.1| WD-repeat protein, putative [Ricinus communis] gi|223533443|gb|EEF35191.1| WD-repeat protein, putative [Ricinus communis]

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/288 (49%), Positives = 185/288 (64%), Gaps = 10/288 (3%)

Query: 392  NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 451
            NN SR    L D    +  +  E S   KL  +NEPS+CR+L LPDN    RV RLIY++
Sbjct: 730  NNDSR---ILADVKPRIADEPTENSRIWKLTEVNEPSQCRSLRLPDNLTAMRVSRLIYTN 786

Query: 452  SGDFLVALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIA-ADPKDSI 509
            SG  L+ L   A HKLWKWQ N ++L  +   ++  QL+QPSS ++MTNDI+  +P+DS+
Sbjct: 787  SGLSLLGLASNAVHKLWKWQRNDRNLSGKATASVVPQLWQPSSGILMTNDISDTNPEDSV 846

Query: 510  SCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 565
             CFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +D
Sbjct: 847  PCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 906

Query: 566  SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625
            SSI ++     + K KLKGHQ RIT LA+S SLNVLVSSGADAQLCVW   GW+K  SKF
Sbjct: 907  SSIQIYNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADAQLCVWSTDGWEKQASKF 966

Query: 626  LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 673
            L     G    + +   +QFH DQ HLL++HE +I +YEAP L    Q
Sbjct: 967  LQ-IPPGRGSASLVDTRVQFHLDQTHLLAVHESRIAIYEAPKLECVKQ 1013

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443059|ref|XP_004139298.1| PREDICTED: topless-related protein 4-like [Cucumis sativus]

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 142/286 (49%), Positives = 190/286 (66%), Gaps = 16/286 (5%)

Query: 392  NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 451
            NN SR   SL D    +  +S++KS   KL  INEP++CR+L LPDN    RV RLIY++
Sbjct: 730  NNDSR---SLADVKPRIADESVDKSRIWKLTEINEPTQCRSLRLPDNLTASRVSRLIYTN 786

Query: 452  SGDFLVALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIA-ADPKDSI 509
            SG  ++AL   A HKLW+WQ N +++  +   ++  QL+QP S ++MTNDI+  +P+D++
Sbjct: 787  SGLAILALASNAVHKLWRWQRNDRNVTVKATASVAPQLWQPPSGILMTNDISDTNPEDAV 846

Query: 510  SCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 565
             CFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +D
Sbjct: 847  PCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 906

Query: 566  SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625
            SSI ++     + K KLKGHQ RIT LA+S  LNVLVSSGAD+QLCVW   GW+K  +KF
Sbjct: 907  SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNQLNVLVSSGADSQLCVWSTDGWEKQVNKF 966

Query: 626  LH---SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 668
            L    S  T  + +T     +QFH DQIHLL+IHE QI +YEAP L
Sbjct: 967  LQVPSSRTTAPLADT----RVQFHIDQIHLLAIHETQIAIYEAPKL 1008

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517894|ref|XP_004165979.1| PREDICTED: topless-related protein 4-like [Cucumis sativus]

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 142/286 (49%), Positives = 190/286 (66%), Gaps = 16/286 (5%)

Query: 392 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 451
           NN SR   SL D    +  +S++KS   KL  INEP++CR+L LPDN    RV RLIY++
Sbjct: 219 NNDSR---SLADVKPRIADESVDKSRIWKLTEINEPTQCRSLRLPDNLTASRVSRLIYTN 275

Query: 452 SGDFLVALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIA-ADPKDSI 509
           SG  ++AL   A HKLW+WQ N +++  +   ++  QL+QP S ++MTNDI+  +P+D++
Sbjct: 276 SGLAILALASNAVHKLWRWQRNDRNVTVKATASVAPQLWQPPSGILMTNDISDTNPEDAV 335

Query: 510 SCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 565
            CFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +D
Sbjct: 336 PCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 395

Query: 566 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625
           SSI ++     + K KLKGHQ RIT LA+S  LNVLVSSGAD+QLCVW   GW+K  +KF
Sbjct: 396 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNQLNVLVSSGADSQLCVWSTDGWEKQVNKF 455

Query: 626 LH---SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 668
           L    S  T  + +T     +QFH DQIHLL+IHE QI +YEAP L
Sbjct: 456 LQVPSSRTTAPLADT----RVQFHIDQIHLLAIHETQIAIYEAPKL 497

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
TAIR|locus:2040100	740	AT2G25420 "AT2G25420" [Arabido	0.486	0.460	0.426	1.3e-130
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	0.393	0.246	0.441	2.3e-99
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	0.393	0.244	0.441	4.2e-99
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.358	0.221	0.411	1.4e-86
TAIR|locus:2159562	589	AT5G08560 "AT5G08560" [Arabido	0.329	0.392	0.235	8.8e-07
WB|WBGene00004895	510	smu-1 [Caenorhabditis elegans	0.215	0.296	0.228	1.4e-05
GENEDB_PFALCIPARUM|PFC0365w	532	PFC0365w "conserved protein, p	0.279	0.368	0.262	1.7e-05
UNIPROTKB|O77325	532	PFC0365w "PRP19-like protein,	0.279	0.368	0.262	1.7e-05
POMBASE|SPAC343.04c	507	SPAC343.04c "WD repeat protein	0.216	0.299	0.263	5.7e-05
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.306	0.495	0.264	8e-05

TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
 Identities = 153/359 (42%), Positives = 220/359 (61%)

Query:     6 MCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYL 65
             M +D+    +L+ LI++F +EE ++ESL  LEQ+S +FF+       ++NG W+ A+ YL
Sbjct:     1 MILDEKNRKNLVFLILQFFDEEGYEESLHLLEQDSGVFFDFSYLSNAILNGNWKDADDYL 60

Query:    66 SAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAE 125
             SAFT  + +  S+KMFF L K K+ EA  R   +EA  IF KDL+   V ++    +L E
Sbjct:    61 SAFTSPEANTFSRKMFFGLFKLKFSEAPDRSGGSEAVKIFSKDLRRIPVLKDDSFDDLVE 120

Query:   126 LLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKL 185
             ++A+ D+R  E+      A   RAKL   L  L + N  L+ KL FP +N SAL +LI L
Sbjct:   121 VIAVDDMRIPEETCCVDKAPG-RAKLCVDLHKLAESNPSLRGKLDFPSLNKSALLALISL 179

Query:   186 ICPSFEKET---KEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDN 242
             +CP+  +     KE+LI LI QFL E ++K TLHKLEQET+VFF++NY  E +  GE+  
Sbjct:   180 LCPNCSRRKGGLKEDLICLILQFLYEAKYKNTLHKLEQETKVFFNLNYLAEVMKLGEYGK 239

Query:   243 AEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPS----DFAERAHLFDDFKVL 298
             AE+YL AFTN  DN YS  MF ++Q+   L++ + +   PS    + + +  L     +L
Sbjct:   240 AEEYLGAFTNWEDNKYSKAMFLELQKLICLQSTEWEVATPSGSLDNMSLKIKLHASVAML 299

Query:   299 VERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNL 357
              ++NP+L+D+LKFPSM+KSRLL+L+KQ MDWW   C        N T SL++ P VS L
Sbjct:   300 AKKNPVLKDELKFPSMEKSRLLTLVKQTMDWWT--C--------NNTSSLENVPVVSYL 348

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 2.3e-99, Sum P(2) = 2.3e-99
 Identities = 125/283 (44%), Positives = 181/283 (63%)

Query:   397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456
             +S ++ D    +  +S +KS   KL  + EPS+CR+L LP+N    ++ RLI+++SG+ +
Sbjct:   713 DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIFTNSGNAI 772

Query:   457 VALTQTATHKLWKWQSN-KQSLEEENVNMESQLYQPSSKLVMTNDIA-ADPKDSISCFAL 514
             +AL   A H LWKWQ N + +  +   ++  Q +QP+S ++MTND+A  +P++++ CFAL
Sbjct:   773 LALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFAL 832

Query:   515 --RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 570
                 S++ SASGGKIS+F++ TF+T+ATF  PPP AT+    PQD  + A G DDS+I +
Sbjct:   833 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQI 892

Query:   571 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630
             +     + K+KLKGH  RIT LA+S  LNVLVSSGADAQLCVW+  GW+K  SK L   Q
Sbjct:   893 YNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQ 952

Query:   631 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 673
              G    +     +QFH DQ+H L +HE Q+ +YE   L    Q
Sbjct:   953 -GRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQ 994

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.2e-99, Sum P(2) = 4.2e-99
 Identities = 125/283 (44%), Positives = 181/283 (63%)

Query:   397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456
             +S ++ D    +  +S +KS   KL  ++EPS+CR+L LP+N    ++ RLI+++SG+ +
Sbjct:   724 DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISRLIFTNSGNAI 783

Query:   457 VALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIA-ADPKDSISCFAL 514
             +AL   A H LWKWQ N+++   +   ++  Q +QP+S ++MTND+A  +P++++ CFAL
Sbjct:   784 LALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFAL 843

Query:   515 --RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 570
                 S++ SASGGKIS+F++ TF+T+ATF  PPP AT+    PQD  + A G DDS+I +
Sbjct:   844 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQI 903

Query:   571 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630
             +     + K+KLKGH  RIT LA+S  LNVLVSSGADAQLCVW+  GW+K  SK L   Q
Sbjct:   904 YNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSKVLPLPQ 963

Query:   631 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 673
              G          +QFH DQ H L +HE Q+ +YE   L    Q
Sbjct:   964 -GRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQ 1005

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 1.4e-86, Sum P(3) = 1.4e-86
 Identities = 107/260 (41%), Positives = 159/260 (61%)

Query:   412 SLEKSVNLKLQLINEPSECRTLLLPDNSFG-GRVVRLIYSHSGDFLVALTQTATHKLWKW 470
             S++KS  L+L  I +P++CR + +PD+     +V RL+Y++SG  ++AL      +LWKW
Sbjct:   735 SVDKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKW 794

Query:   471 QSNKQS-LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--RGSHLFSASGGKI 527
               N+Q+   +   ++  Q +QP+S L+M ND+  +P+ S+ C AL    S++ SA GGK+
Sbjct:   795 IRNEQNPTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCIALSKNDSYVMSACGGKV 854

Query:   528 SIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH 585
             S+F++ TF+ + TF  PPP +T+    PQD  + A G +DSSI ++     + K KLKGH
Sbjct:   855 SLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGH 914

Query:   586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 645
             Q  IT LA+S +LN+LVSSGADAQL  W A  W+K  S  +     G  P       +QF
Sbjct:   915 QKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQ-LPPGKAPVGD--TRVQF 971

Query:   646 HPDQIHLLSIHEGQIDVYEA 665
             H DQI LL  HE Q+ +Y+A
Sbjct:   972 HNDQIQLLVSHETQLAIYDA 991

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
 Identities = 58/246 (23%), Positives = 109/246 (44%)

Query:     3 GSKMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN---VHRFGEIVMNGEWE 59
             GSK  I K  +  +IT  +  L    + ++   LE+ES I  +   +  F + V +G+W+
Sbjct:    58 GSKGVIRKSEFVRIITRALYSL---GYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWD 114

Query:    60 KAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRI 119
             ++ K L       D    K   F L + K+ E L   +  +A    R ++    ++  R+
Sbjct:   115 QSVKTLHRIG-FPDEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRV 173

Query:   120 DCELAE-LLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSA 178
               ELA  L++      +   +    + +SR+K+++ L+ L+  + I+ +K +   V NS 
Sbjct:   174 H-ELASSLISPSSFISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEKRLECLVENSL 232

Query:   179 LSSLIKLICPSFEKETKEEL-IYLIHQFLNEEEFKETLHKLEQET-RVFF-DINYFREYI 235
                + +  C  F      +L +Y  HQ    +   +T   LE  T  V+F   ++  +Y+
Sbjct:   233 --HIQRDSCV-FHNTLDSDLSLYSDHQCGKHQIPSQTAQILESHTDEVWFLQFSHNGKYL 289

Query:   236 TSGEWD 241
              S   D
Sbjct:   290 ASSSKD 295

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

WB|WBGene00004895 smu-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 93 (37.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
 Identities = 39/171 (22%), Positives = 74/171 (43%)

Query:   448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD 507
             ++S   ++LV+ ++    ++W + + K  L ++        YQ    L+M +  AA    
Sbjct:   221 VFSPDANYLVSGSKDGFIEVWNYMNGK--LRKD------LKYQAQDNLMMMD--AA---- 266

Query:   508 SISCFAL-RGSHLFSASG--GKISIFSLETFQTLATF--ANPPPIATYFILLPQDLFAFG 562
              + C +  R S + +     GKI ++ +ET   L  F  A+   +              G
Sbjct:   267 -VRCISFSRDSEMLATGSIDGKIKVWKVETGDCLRRFDRAHTKGVCAVRFSKDNSHILSG 325

Query:   563 FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 613
              +D  + VH   + K   +++GH + IT + YS   N ++S   D  + VW
Sbjct:   326 GNDHVVRVHGMKSGKCLKEMRGHSSYITDVRYSDEGNHIISCSTDGSIRVW 376

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI;IMP

GO:0007638 "mechanosensory behavior" evidence=IGI

GO:0048666 "neuron development" evidence=IGI

GO:0002119 "nematode larval development" evidence=IGI

GO:0040011 "locomotion" evidence=IGI

GO:0048644 "muscle organ morphogenesis" evidence=IGI

GENEDB_PFALCIPARUM|PFC0365w PFC0365w "conserved protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 139 (54.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 56/213 (26%), Positives = 93/213 (43%)

Query:   472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIF- 530
             +N    +  ++N    +Y  + + V  + I    KD ++  AL     +  S  K S++ 
Sbjct:   303 NNNNDNDGSHLNNNEYIYD-NYQFVSAHVITKH-KDHVTSLALHPLENYFISSSKDSMWI 360

Query:   531 --SLETFQTLATFANPPPIATYFILLPQDL-FAFGFDDSSILVHCPCTKKTKAKLKGHQN 587
                LET +T+ T  + P    +  + P  + F     DS+I ++   +++ KA L GH  
Sbjct:   361 LHDLETAKTIKTSKDNPSSFKHLAIHPDGMMFGIAAQDSNIHIYDIKSQEYKATLNGHTK 420

Query:   588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647
              + CL++S +   L SS  D  + +WD    +K       SFQT  + ET   N I F  
Sbjct:   421 SLNCLSFSENGYYLASSSKDNTVKLWDL---RKA-----QSFQTITLNETP--NFISFDY 470

Query:   648 DQIHLLSIHEGQIDVYEAPTLNHTSQV-LLISH 679
                +L    E  I +Y   T N  + +  L SH
Sbjct:   471 SGKYLSIAVENDIQIYNFETKNQANLIKTLSSH 503

GO:0016363 "nuclear matrix" evidence=ISS

UNIPROTKB|O77325 PFC0365w "PRP19-like protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 139 (54.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 56/213 (26%), Positives = 93/213 (43%)

Query:   472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIF- 530
             +N    +  ++N    +Y  + + V  + I    KD ++  AL     +  S  K S++ 
Sbjct:   303 NNNNDNDGSHLNNNEYIYD-NYQFVSAHVITKH-KDHVTSLALHPLENYFISSSKDSMWI 360

Query:   531 --SLETFQTLATFANPPPIATYFILLPQDL-FAFGFDDSSILVHCPCTKKTKAKLKGHQN 587
                LET +T+ T  + P    +  + P  + F     DS+I ++   +++ KA L GH  
Sbjct:   361 LHDLETAKTIKTSKDNPSSFKHLAIHPDGMMFGIAAQDSNIHIYDIKSQEYKATLNGHTK 420

Query:   588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647
              + CL++S +   L SS  D  + +WD    +K       SFQT  + ET   N I F  
Sbjct:   421 SLNCLSFSENGYYLASSSKDNTVKLWDL---RKA-----QSFQTITLNETP--NFISFDY 470

Query:   648 DQIHLLSIHEGQIDVYEAPTLNHTSQV-LLISH 679
                +L    E  I +Y   T N  + +  L SH
Sbjct:   471 SGKYLSIAVENDIQIYNFETKNQANLIKTLSSH 503

GO:0016363 "nuclear matrix" evidence=ISS

POMBASE|SPAC343.04c SPAC343.04c "WD repeat protein, human WDR26 family, ubiquitin ligase complex subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 116 (45.9 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
 Identities = 44/167 (26%), Positives = 80/167 (47%)

Query:     6 MCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFF---NVHRFGEIVMNGEWEKAE 62
             M +D+     +I L+++FL +  + ESL+ALE+E+ +     +V R  + V+ G+W  AE
Sbjct:     1 MALDEKFQLEVIHLLLQFLNDYGYDESLKALEKETGLVSETEDVKRLKQAVLQGDWITAE 60

Query:    63 KYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVF-SVSQNRIDC 121
                S     D+S   +  F  L+K + C  L R      ++I+   L+ F S   N+   
Sbjct:    61 AAFSIMQLRDESKRKEAQFL-LQKQR-CLELARSGAI-CEAIYV--LQNFESTDFNKEKE 115

Query:   122 ELAELLALKDLRENEQL---SGYTNATSSRAKLIDSLKLLVKENRIL 165
              L  ++   + + N +L   +GY N   +R  L++ L   +    +L
Sbjct:   116 RLVSIILESNNKSNNELITKNGYGN---TRLDLLNQLSEYISPEILL 159

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0034657 "GID complex" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0044732 "mitotic spindle pole body" evidence=IDA

GO:0045721 "negative regulation of gluconeogenesis" evidence=ISO

GO:0010969 "regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion" evidence=IDA

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 128 (50.1 bits), Expect = 8.0e-05, P = 8.0e-05
 Identities = 65/246 (26%), Positives = 104/246 (42%)

Query:   444 VVRLIYSHSGDFLVALTQTATHKLWKWQSN--KQSLEEENVNMESQLYQPSSKLVMTNDI 501
             V  + +S +G  L + +   T KLW   S+  K ++E  +  +ES  + P+ +L   N  
Sbjct:    86 VQSVAFSPNGQLLASGSSDTTIKLWNSASDSLKHTMEGHSDRVESVAFSPNGQL--WNPA 143

Query:   502 AADPKDSIS---------CFALRGSHLFSASGGK-ISIFSLETFQTLATFANPPPIATYF 551
                 K +I           F+  G  L S S  K I ++   T     T           
Sbjct:   144 IGSLKHTIEGHSDWVLSVAFSPDGQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWVLPL 203

Query:   552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 610
             +  P   L A G +D++I +  P +   K  L+GH N+I  LA+S +  +L S  +DA +
Sbjct:   204 VFSPDGRLLASGSNDATIKLWDPPSGSLKHTLEGHSNKIESLAFSPNGQLLASGSSDATI 263

Query:   611 CVWD-AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQ--IDVYEAPT 667
              +WD A G          SF+  L   + +V  + F PD   LL    G   I +++  T
Sbjct:   264 KLWDTATG----------SFRHTLKGHSDMVLSVVFSPDS-QLLESGSGDNTIKLWDPAT 312

Query:   668 --LNHT 671
               L H+
Sbjct:   313 GILKHS 318

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	701
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-08
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	6e-08
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	4e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 45/175 (25%), Positives = 66/175 (37%), Gaps = 27/175 (15%)

Query: 444 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA 503
           V  + +S  G F+ + +Q  T KLW              ++ +       K V T     
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLW--------------DLRTG------KCVATLT--- 174

Query: 504 DPKDSISCFAL--RGSHLFSASG-GKISIFSLETFQTLATFANPPPIATYFILLP-QDLF 559
                ++  A    G  L S+S  G I ++ L T + L T              P   L 
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 560 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614
           A G +D +I V    T +    L GH N +T LA+S     L S  AD  + +WD
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 21/181 (11%)

Query: 506 KDSISCFAL--RGSHLFSASG-GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF 561
              ++C A    G  L + SG G I ++ LET + L T                    A 
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 562 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621
           G  D +I +    T +    L GH + ++ +A+S    +L SS  D  + VWD       
Sbjct: 69  GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE--TGK 126

Query: 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLN-------HTSQ 673
           C   L             VN + F PD   + S   +G I +++  T         HT +
Sbjct: 127 CLTTLRGHTDW-------VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE 179

Query: 674 V 674
           V
Sbjct: 180 V 180

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 43/210 (20%), Positives = 72/210 (34%), Gaps = 36/210 (17%)

Query: 449 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS 508
           +S  G  L + ++  T K+W  ++ K                     + T        D 
Sbjct: 101 FSPDGRILSSSSRDKTIKVWDVETGKC--------------------LTT---LRGHTDW 137

Query: 509 ISCFALRGSHLFSASG---GKISIFSLETFQTLATFANPPPIATYFILLPQ-DLFAFGFD 564
           ++  A      F AS    G I ++ L T + +AT              P  +       
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197

Query: 565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624
           D +I +    T K    L+GH+N +  +A+S    +L S   D  + VWD    + + + 
Sbjct: 198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Query: 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654
             H         T  V  + + PD   L S
Sbjct: 258 SGH---------TNSVTSLAWSPDGKRLAS 278

Length = 289

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 49.5 bits (119), Expect = 6e-08
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 42  IFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTE 100
            F    R  E+++ G+W++A ++LS+        +S K+ FELRK K+ E + + +  E
Sbjct: 1   EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 224 VFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDR 277
            F +    RE I  G+WD A ++LS+         S   F  +++QK+LE V +
Sbjct: 1   EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFE-LRKQKFLELVRQ 53

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 575 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614
           + +    LKGH   +T +A+S     L S   D  + +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614
            K    LKGH   +T +A+S   N+L S   D  + VWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 73/403 (18%), Positives = 140/403 (34%), Gaps = 43/403 (10%)

Query: 300 ERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYC---INVMPNANNETISLKDFPTVSN 356
             N     + K   + KS L   +  +    +      I ++   ++  +SL D  ++  
Sbjct: 2   VDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLL 61

Query: 357 LRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKS 416
             +  SI +   + +G  L + S D +     ++ +N  +   SL     +  +K    S
Sbjct: 62  RGHEDSITSIAFSPDGELLLSGSSDGT--IKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 417 VNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF----------LVALTQTATHK 466
            +    L+   S   T+ L D S  G+++R +  HS             L+A   +    
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGK 526
           +  W                      +  V +   + D    I+           +S G 
Sbjct: 180 IKLWDLRTGKPL--------STLAGHTDPVSSLAFSPDGGLLIAS---------GSSDGT 222

Query: 527 ISIFSLETFQTLATFANPPPIATYFILLPQ-DLFAFGFDDSSILV-HCPCTKKTKAKLKG 584
           I ++ L T + L +  +    +      P   L A G  D +I +     +      L G
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282

Query: 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 644
           H + +  +A+S    +L S  +D  + +WD    K L S  L             V+ + 
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG-------HEGPVSSLS 335

Query: 645 FHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLLISHIMFVQI 685
           F PD   L+S    +G I +++  T      +   S+++ V  
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSF 378

Length = 466

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 195 KEELIYLIHQFLNEEEFKETLHKLEQETRV 224
           + EL  LI ++L    ++ET   L++E+ +
Sbjct: 3   RSELNRLILEYLLRNGYEETAETLQKESGL 32

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 641
           LKGH   +TC+A+S    +L +   D  + VWD    + L +   H+           V 
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP---------VR 55

Query: 642 HIQFHPDQIHLLS 654
            +    D  +L S
Sbjct: 56  DVAASADGTYLAS 68

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	701
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
PTZ00421	493	coronin; Provisional	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.87
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.81
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.79
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.79
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.79
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.79
KOG4328	498	consensus WD40 protein [Function unknown]	99.79
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.78
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.77
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG1963	792	consensus WD40 repeat protein [General function pr	99.75
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.75
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.73
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.71
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.71
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.7
KOG0649	325	consensus WD40 repeat protein [General function pr	99.7
COG2319	466	FOG: WD40 repeat [General function prediction only	99.7
KOG4227	609	consensus WD40 repeat protein [General function pr	99.68
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.67
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.67
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.67
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.66
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.65
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.64
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.64
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.63
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.62
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.61
PRK11028	330	6-phosphogluconolactonase; Provisional	99.61
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.6
KOG1334	559	consensus WD40 repeat protein [General function pr	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.6
KOG1963	792	consensus WD40 repeat protein [General function pr	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
KOG1188	376	consensus WD40 repeat protein [General function pr	99.58
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.57
KOG2321	703	consensus WD40 repeat protein [General function pr	99.57
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	99.57
KOG1188	376	consensus WD40 repeat protein [General function pr	99.56
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.55
KOG1310	758	consensus WD40 repeat protein [General function pr	99.54
KOG2139	445	consensus WD40 repeat protein [General function pr	99.54
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.54
PRK03629	429	tolB translocation protein TolB; Provisional	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.51
KOG4227	609	consensus WD40 repeat protein [General function pr	99.51
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.5
PRK05137	435	tolB translocation protein TolB; Provisional	99.49
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.49
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.49
PRK02889	427	tolB translocation protein TolB; Provisional	99.48
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.48
PRK04922	433	tolB translocation protein TolB; Provisional	99.45
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.45
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.45
KOG1334	559	consensus WD40 repeat protein [General function pr	99.45
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.44
KOG1310	758	consensus WD40 repeat protein [General function pr	99.44
KOG2139	445	consensus WD40 repeat protein [General function pr	99.43
PRK02889	427	tolB translocation protein TolB; Provisional	99.42
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.42
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.4
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.39
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.39
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.39
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.38
KOG2315	566	consensus Predicted translation initiation factor	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.37
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.35
PRK01029	428	tolB translocation protein TolB; Provisional	99.34
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.34
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.3
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.3
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.3
PRK01029	428	tolB translocation protein TolB; Provisional	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.29
PRK00178	430	tolB translocation protein TolB; Provisional	99.28
PRK00178	430	tolB translocation protein TolB; Provisional	99.27
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.25
KOG2321	703	consensus WD40 repeat protein [General function pr	99.24
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.23
PRK04792	448	tolB translocation protein TolB; Provisional	99.23
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.23
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.22
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.2
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.19
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.18
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.17
COG4946	668	Uncharacterized protein related to the periplasmic	99.16
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.12
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.12
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.11
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.11
KOG4547	541	consensus WD40 repeat-containing protein [General	99.11
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.1
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.09
COG4946	668	Uncharacterized protein related to the periplasmic	99.09
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.07
KOG2315	566	consensus Predicted translation initiation factor	99.07
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.06
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.0
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.99
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.99
KOG2314	698	consensus Translation initiation factor 3, subunit	98.98
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.91
PRK04043	419	tolB translocation protein TolB; Provisional	98.89
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.87
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.85
PRK04043	419	tolB translocation protein TolB; Provisional	98.83
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.83
KOG2314	698	consensus Translation initiation factor 3, subunit	98.82
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.82
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.77
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.75
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.74
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.73
KOG2695	425	consensus WD40 repeat protein [General function pr	98.73
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.73
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.7
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.68
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.67
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.66
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.65
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.62
KOG0396	389	consensus Uncharacterized conserved protein [Funct	98.61
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.59
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.57
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.55
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.54
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.54
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.51
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.51
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.46
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.46
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.45
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	98.43
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.43
KOG2695	425	consensus WD40 repeat protein [General function pr	98.39
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.37
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.36
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.36
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.34
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.32
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.29
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.28
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.26
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.23
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.22
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.18
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.18
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.07
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.07
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.06
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.02
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.0
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.98
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.97
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.96
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.94
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.94
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.93
PRK02888	635	nitrous-oxide reductase; Validated	97.9
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.86
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.83
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.81
KOG3621	726	consensus WD40 repeat-containing protein [General	97.78
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.75
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.75
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.74
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.72
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.7
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.67
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.67
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.66
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.65
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.6
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.59
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.57
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.57
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.53
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.52
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.48
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.42
KOG3621	726	consensus WD40 repeat-containing protein [General	97.31
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.29
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.28
COG3391	381	Uncharacterized conserved protein [Function unknow	97.27
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.26
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.24
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.2
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.19
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.19
KOG2395	644	consensus Protein involved in vacuole import and d	97.19
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.15
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	97.1
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.07
KOG2395	644	consensus Protein involved in vacuole import and d	97.02
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.98
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.97
PRK02888	635	nitrous-oxide reductase; Validated	96.95
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.92
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.89
COG3391	381	Uncharacterized conserved protein [Function unknow	96.87
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.83
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.75
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.69
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.62
PRK13616	591	lipoprotein LpqB; Provisional	96.62
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.61
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.53
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.52
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.49
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.35
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.33
PHA02713	557	hypothetical protein; Provisional	96.16
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.09
PRK13616	591	lipoprotein LpqB; Provisional	96.08
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.99
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.9
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.73
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.55
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.49
KOG2444	238	consensus WD40 repeat protein [General function pr	95.49
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.43
PRK10115	686	protease 2; Provisional	95.43
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.37
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.37
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.36
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.31
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.31
PHA02713	557	hypothetical protein; Provisional	95.28
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.21
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.21
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.15
PHA03098	534	kelch-like protein; Provisional	95.15
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.03
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.96
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.84
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.51
PHA03098	534	kelch-like protein; Provisional	94.28
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.12
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.05
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.73
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.72
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.5
KOG2444	238	consensus WD40 repeat protein [General function pr	93.48
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.33
PHA02790	480	Kelch-like protein; Provisional	93.3
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.24
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.99
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.76
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.64
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.43
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.32
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.22
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.82
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.5
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.92
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.65
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.6
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.27
PHA02790	480	Kelch-like protein; Provisional	90.24
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.14
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.01
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	89.6
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.18
COG5167	776	VID27 Protein involved in vacuole import and degra	89.14
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.91
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.83
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	88.79
PRK13684	334	Ycf48-like protein; Provisional	88.76
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.72
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.62
KOG2247	615	consensus WD40 repeat-containing protein [General	88.56
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.47
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	88.36
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.28
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.17
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	87.36
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.05
COG5276	370	Uncharacterized conserved protein [Function unknow	86.95
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	86.9
PRK13684	334	Ycf48-like protein; Provisional	86.65
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	86.49
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.32
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	85.96
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.45
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.12
KOG2247	615	consensus WD40 repeat-containing protein [General	85.06
PRK10115	686	protease 2; Provisional	84.8
KOG3616	1636	consensus Selective LIM binding factor [Transcript	83.97
PF14727	418	PHTB1_N: PTHB1 N-terminus	83.49
COG5167	776	VID27 Protein involved in vacuole import and degra	82.64
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	82.41
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	82.34
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.78
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	80.12

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-64  Score=489.69  Aligned_cols=482  Identities=18%  Similarity=0.219  Sum_probs=392.2

Q ss_pred             CCCcccccccchhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh---HHHHHHHHhcCCHHHHHHHhcccccccCCcccc
Q 005342            2 HGSKMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN---VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSK   78 (701)
Q Consensus         2 ~~~~~~~~~~~~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~---~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~   78 (701)
                      .|+|+.|+   +.|+|||+.|+|+.+||.+|+.+||.|||+.+.   +..|.++|++|+|+.++..+..+...++.+.+.
T Consensus         9 l~~k~lik---k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~e   85 (519)
T KOG0293|consen    9 LGSKGLIK---KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKE   85 (519)
T ss_pred             hhhhceec---cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhHH
Confidence            58999999   999999999999999999999999999999994   999999999999999999998886555555544


Q ss_pred             eehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhccccchhhhhccCCCCChhHHHHHHHHHHhh
Q 005342           79 KMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLL  158 (701)
Q Consensus        79 ~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~  158 (701)
                       +.|++.||+|||++..|....|+.+||++..++ .++.+++++|+.-|..++.....+..........|.+|+++|+++
T Consensus        86 -a~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elsky  163 (519)
T KOG0293|consen   86 -AMFLVNKQIFLEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKY  163 (519)
T ss_pred             -HHHHHHHHHHHHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhh
Confidence             999999999999999999999999999999999 569999999988887755322222221123667899999999999


Q ss_pred             hccccccccccccccccchHHHHHHHHhCCC----CCccccchhhhhhHhhhccchhhhhhhhhhccCcccccccccccc
Q 005342          159 VKENRILQDKLIFPCVNNSALSSLIKLICPS----FEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREY  234 (701)
Q Consensus       159 i~~~~~~~~~~~~~~~p~~RL~~Ll~q~~~~----c~~~~~~~~~~l~~q~l~~~~~~~~~~~l~~es~~~~~~~~~~~~  234 (701)
                      |||++|         +|++||++||+|+..+    |.||+.-+.++|         |+++.+...               
T Consensus       164 i~p~il---------lP~rRLehLl~qAv~~Q~d~cvyhnsldsvsl---------l~Dh~c~~~---------------  210 (519)
T KOG0293|consen  164 IPPNIL---------LPKRRLEHLLEQAVKYQRDSCVYHNSLDSVSL---------LSDHFCGRL---------------  210 (519)
T ss_pred             CCHhhc---------CChHHHHHHHHHHHHHHHhHhHHhcccchhhh---------hhhcccCcc---------------
Confidence            999999         9999999999999877    888885444555         344433220               


Q ss_pred             cccccccccccccccccccccccccchhhcccccceeeeeecccccccccccccccccccchhhhhhcccccCccccccc
Q 005342          235 ITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSM  314 (701)
Q Consensus       235 i~~g~~~~~e~~l~~~~~~~~~~~s~~~~~~~~~q~~~~~~~~~~~~~~~~~dr~~~~~~~~~l~~~~~~la~~i~iwd~  314 (701)
                                                    ++                                                
T Consensus       211 ------------------------------qi------------------------------------------------  212 (519)
T KOG0293|consen  211 ------------------------------QI------------------------------------------------  212 (519)
T ss_pred             ------------------------------cC------------------------------------------------
Confidence                                          00                                                


Q ss_pred             CccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCc
Q 005342          315 DKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSS  387 (701)
Q Consensus       315 ~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~  387 (701)
                       +.+..+.+..|++.||  .+.|||+       +.|.+..+|++.....+..                          ..
T Consensus       213 -p~qt~qil~~htdEVW--fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl--------------------------~~  263 (519)
T KOG0293|consen  213 -PSQTWQILQDHTDEVW--FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL--------------------------KK  263 (519)
T ss_pred             -CchhhhhHhhCCCcEE--EEEEcCCCeeEeeccCCceEEEEEEecCcceee--------------------------ee
Confidence             1223345688999999  9999999       8999999999976655433                          22


Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .+.+|.. |..+.||||.++|++|+.|..+.+||+.    +|.+.... +. ++...+.+++|.|||..+++|+.|+++.
T Consensus       264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~----tgd~~~~y-~~-~~~~S~~sc~W~pDg~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD----TGDLRHLY-PS-GLGFSVSSCAWCPDGFRFVTGSPDRTII  337 (519)
T ss_pred             eeecccCceEEEEECCCCCeEEecCchHheeeccCC----cchhhhhc-cc-CcCCCcceeEEccCCceeEecCCCCcEE
Confidence            3457777 9999999999999999999999999998    77665522 22 3568899999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN  543 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~  543 (701)
                      .||++++.                      ... ........|.+++++  |+++++.+ |..|++++.++...+..+. 
T Consensus       338 ~wdlDgn~----------------------~~~-W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-  393 (519)
T KOG0293|consen  338 MWDLDGNI----------------------LGN-WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-  393 (519)
T ss_pred             EecCCcch----------------------hhc-ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-
Confidence            99874431                      100 112233568899998  88888877 9999999998776665554 


Q ss_pred             CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC--CeEEEEEec-CCCEEEEEeCCCeEEEEECCCCe
Q 005342          544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSL-SLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~--~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      ...+|+++++|.|| ++++.-.+..+++||+.....++.+.||+.  .+..-+|.. +..+++|||+|++|+||+..+|+
T Consensus       394 e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk  473 (519)
T KOG0293|consen  394 EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK  473 (519)
T ss_pred             ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc
Confidence            56789999999999 999999999999999999999999999986  345557765 55799999999999999999986


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEE-EecCeEEEEECCC
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPT  667 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~s-g~Dg~I~iwd~~~  667 (701)
                      ++     . ...||.   ..|++|+|+|... ++|+ |+||+|+||....
T Consensus       474 ll-----~-~LsGHs---~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  474 LL-----A-VLSGHS---KTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ee-----E-eecCCc---ceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            43     3 334887   9999999999765 5666 4899999998753

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.2e-55  Score=412.25  Aligned_cols=475  Identities=19%  Similarity=0.237  Sum_probs=377.2

Q ss_pred             hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhh
Q 005342           13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK   88 (701)
Q Consensus        13 ~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~   88 (701)
                      ..+|||||+|||+|..++.++++||+|++++||    ++-|.+.|.+|+||.+++.++.| ++|+++     +..||||.
T Consensus         7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~kk-----L~dLYEqi   80 (508)
T KOG0275|consen    7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDKK-----LIDLYEQI   80 (508)
T ss_pred             cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchhH-----HHHHHHHH
Confidence            678999999999999999999999999999996    99999999999999999999999 455443     36999999


Q ss_pred             hhHHHhcCChhHHHHHHHhc--ccccccCChhHHHHHHHHhccccchhhhhccCCCCChhHHHHHHHHHHhhhccccccc
Q 005342           89 YCEALCRHERTEADSIFRKD--LKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQ  166 (701)
Q Consensus        89 ~lEll~~~~~~~a~~~L~~~--l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~  166 (701)
                      .|||+|.+|...|..+||+.  +..+++.+|+||-+|+.||..+.|++.+.+.. ..+++.|..+++.+..++..     
T Consensus        81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V-----  154 (508)
T KOG0275|consen   81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV-----  154 (508)
T ss_pred             HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence            99999999999999999954  44567779999999999999999976544433 23888999999999999999     


Q ss_pred             cccccccccchHHHHHHHHhCCCCCccccchhhhhhHhhhccchhhhhhhhhhccCcccccccccccccccccccccccc
Q 005342          167 DKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKY  246 (701)
Q Consensus       167 ~~~~~~~~p~~RL~~Ll~q~~~~c~~~~~~~~~~l~~q~l~~~~~~~~~~~l~~es~~~~~~~~~~~~i~~g~~~~~e~~  246 (701)
                             +||+||+.||.|+                   |+   ++.|...|  -+|.  .+..||...-.-+  ..|  
T Consensus       155 -------VppSRLlaLlGQa-------------------LK---WQqHQGLL--PPGt--~iDLFRGkAA~K~--~~E--  197 (508)
T KOG0275|consen  155 -------VPPSRLLALLGQA-------------------LK---WQQHQGLL--PPGT--TIDLFRGKAAMKD--QEE--  197 (508)
T ss_pred             -------cChHHHHHHHHHH-------------------hh---hHhhcCCC--CCCc--eeeeccchhhhhh--hHh--
Confidence                   9999999997764                   44   23332222  0111  1334442211000  000  


Q ss_pred             cccccccccccccchhhcccccceeeeeecccccccccccccccccccchhhhhhcccccCcccccccCccceeEEEeec
Q 005342          247 LSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQI  326 (701)
Q Consensus       247 l~~~~~~~~~~~s~~~~~~~~~q~~~~~~~~~~~~~~~~~dr~~~~~~~~~l~~~~~~la~~i~iwd~~~~~~~~~l~~h  326 (701)
                                            .+|..                              .|+.+|++             +.
T Consensus       198 ----------------------e~~Pt------------------------------~l~r~IKF-------------g~  212 (508)
T KOG0275|consen  198 ----------------------ERYPT------------------------------QLARSIKF-------------GQ  212 (508)
T ss_pred             ----------------------hhchH------------------------------Hhhhheec-------------cc
Confidence                                  01100                              00012221             12


Q ss_pred             CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342          327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES  398 (701)
Q Consensus       327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l  398 (701)
                      .+.+.  |..||||       +.||.|.+||..+|+....          ++-.           ....+..++. |.|+
T Consensus       213 KSh~E--cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD----------LkYQ-----------Aqd~fMMmd~aVlci  269 (508)
T KOG0275|consen  213 KSHVE--CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD----------LKYQ-----------AQDNFMMMDDAVLCI  269 (508)
T ss_pred             ccchh--heeeCCCCceEeeccccceeeeehhccchhhhh----------hhhh-----------hhcceeecccceEEE
Confidence            23355  9999999       8999999999999987665          2222           1223567777 9999


Q ss_pred             EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC-CCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342          399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN-SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  477 (701)
Q Consensus       399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~-~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  477 (701)
                      .||.|...+|+|+.||.|++|.+.    +|+|.+   .+. .|...|+|+.||.|+..+++++.|.++++-         
T Consensus       270 ~FSRDsEMlAsGsqDGkIKvWri~----tG~ClR---rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiH---------  333 (508)
T KOG0275|consen  270 SFSRDSEMLASGSQDGKIKVWRIE----TGQCLR---RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIH---------  333 (508)
T ss_pred             eecccHHHhhccCcCCcEEEEEEe----cchHHH---HhhhhhccCeeEEEEccCcchhhcccccceEEEe---------
Confidence            999999999999999999999999    888866   333 689999999999999999999999999998         


Q ss_pred             cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC--CCCeEEEE
Q 005342          478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIATYFI  552 (701)
Q Consensus       478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~--~~~i~~l~  552 (701)
                                  ...+|+++.. + .+|.+.|+...|+  |+.+++++ ||+|++|+.++.+++.+|...  ..+|.++.
T Consensus       334 ------------GlKSGK~LKE-f-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~  399 (508)
T KOG0275|consen  334 ------------GLKSGKCLKE-F-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVI  399 (508)
T ss_pred             ------------ccccchhHHH-h-cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEE
Confidence                        4477776642 4 5899999999999  99999999 999999999999999998744  55788999


Q ss_pred             EcCCC--eEEEEeCCCcEEEEeCCCCceEEeecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeee
Q 005342          553 LLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH  627 (701)
Q Consensus       553 ~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~  627 (701)
                      .-|.+  .++++...++|+|.++ .|+.++.+..   ..+...+.+.||.|.++.+.++|+.++.+.+.+|......++ 
T Consensus       400 ~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-  477 (508)
T KOG0275|consen  400 LLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-  477 (508)
T ss_pred             EcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-
Confidence            99988  8888899999999997 4778888864   234566778999999999999999999999999975433222 


Q ss_pred             eccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEE
Q 005342          628 SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE  664 (701)
Q Consensus       628 ~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd  664 (701)
                           |.   ..|..++-+|..+.+|+ +.||.+++|.
T Consensus       478 -----hE---kdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  478 -----HE---KDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             -----cc---ccccccccCcccchhhhhcccchhhhcC
Confidence                 22   67889999999999998 7999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-44  Score=347.91  Aligned_cols=303  Identities=16%  Similarity=0.197  Sum_probs=264.4

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      +|...+.+|...|.  |++|+|+       +.|.|+++||+.+.....+                             .+
T Consensus       106 rCssS~~GH~e~Vl--~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t-----------------------------~K  154 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVL--SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT-----------------------------CK  154 (480)
T ss_pred             eeccccCCCCCcEE--EEEecCCCceEEecCCCceEEeeccCCCCccee-----------------------------ec
Confidence            77788999999999  9999998       8999999999988776655                             26


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-----CCCEEEEEECCCc
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-----SGDFLVALTQTAT  464 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-----dg~~l~s~s~dg~  464 (701)
                      +|.+ |.+++|+|||+.||+|+.||+|++||..    +++..-  -++.+|...|++++|.|     ..+++++++.||.
T Consensus       155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk----tg~~~g--~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~  228 (480)
T KOG0271|consen  155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK----TGQQIG--RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS  228 (480)
T ss_pred             CCccEEEEEEECCCcchhhccccCCeEEEecCC----CCCccc--ccccCcccceeEEeecccccCCCccceecccCCCC
Confidence            8999 9999999999999999999999999988    443221  15668999999999975     6679999999999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      ++|||+                     ..+.++.. + .+|..+|+|+.|- ..++++|+ |++|++|+...|.+.+.+.
T Consensus       229 vrIWd~---------------------~~~~~~~~-l-sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lk  285 (480)
T KOG0271|consen  229 VRIWDT---------------------KLGTCVRT-L-SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELK  285 (480)
T ss_pred             EEEEEc---------------------cCceEEEE-e-ccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhc
Confidence            999955                     55565432 2 5899999999999 88999999 9999999999999999999


Q ss_pred             CCCCCeEEEEEc-----------CCC--------------------------eEEEEeCCCcEEEEeCCC-CceEEeecC
Q 005342          543 NPPPIATYFILL-----------PQD--------------------------LFAFGFDDSSILVHCPCT-KKTKAKLKG  584 (701)
Q Consensus       543 ~~~~~i~~l~~s-----------pdg--------------------------~l~~gs~dg~I~iwd~~~-~~~~~~l~~  584 (701)
                      +|...|+.++.+           |.+                          .+++|++|.++.+|+... .+++..+.|
T Consensus       286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg  365 (480)
T KOG0271|consen  286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG  365 (480)
T ss_pred             ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence            999999999877           222                          499999999999999765 457888999


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEE
Q 005342          585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY  663 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iw  663 (701)
                      |..-|+.+.||||++++||+|.|..|++||.++|+     .+.++. ||.   ..|+.++||.|.++|++| .|.++++|
T Consensus       366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk-----~lasfR-GHv---~~VYqvawsaDsRLlVS~SkDsTLKvw  436 (480)
T KOG0271|consen  366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK-----FLASFR-GHV---AAVYQVAWSADSRLLVSGSKDSTLKVW  436 (480)
T ss_pred             hhhheeeEEECCCccEEEEeecccceeeeeCCCcc-----hhhhhh-hcc---ceeEEEEeccCccEEEEcCCCceEEEE
Confidence            99999999999999999999999999999999985     233222 676   999999999999999996 89999999


Q ss_pred             ECCCCceeeeeee----eeEEEEEeeEEee
Q 005342          664 EAPTLNHTSQVLL----ISHIMFVQIVVKF  689 (701)
Q Consensus       664 d~~~g~~~~~l~~----i~~~~fs~~~~~f  689 (701)
                      ++++.++...++|    |..+.|||+....
T Consensus       437 ~V~tkKl~~DLpGh~DEVf~vDwspDG~rV  466 (480)
T KOG0271|consen  437 DVRTKKLKQDLPGHADEVFAVDWSPDGQRV  466 (480)
T ss_pred             EeeeeeecccCCCCCceEEEEEecCCCcee
Confidence            9999999999998    9999999985543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-42  Score=335.46  Aligned_cols=288  Identities=17%  Similarity=0.229  Sum_probs=246.5

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      .++++||..+...+.+.++|..+|.  |++||||       +.||+|++||..+|++.-.                    
T Consensus       137 ~TvR~WD~~TeTp~~t~KgH~~WVl--cvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--------------------  194 (480)
T KOG0271|consen  137 TTVRLWDLDTETPLFTCKGHKNWVL--CVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--------------------  194 (480)
T ss_pred             ceEEeeccCCCCcceeecCCccEEE--EEEECCCcchhhccccCCeEEEecCCCCCcccc--------------------
Confidence            7899999999999999999999999  9999999       8999999999999876543                    


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcC-----CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLP-----DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG  453 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~sp-----dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg  453 (701)
                              .|.+|.. |.+++|.|     ..++||+++.||+++|||+.    .+.+..   ...+|+..|+|+.|--+|
T Consensus       195 --------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~----~~~~~~---~lsgHT~~VTCvrwGG~g  259 (480)
T KOG0271|consen  195 --------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK----LGTCVR---TLSGHTASVTCVRWGGEG  259 (480)
T ss_pred             --------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc----CceEEE---EeccCccceEEEEEcCCc
Confidence                    3568888 99999976     57899999999999999997    666665   446899999999998766


Q ss_pred             CEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec------------------
Q 005342          454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------------------  515 (701)
Q Consensus       454 ~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s------------------  515 (701)
                       ++++|+.|++|++|+...                     |.+... + .+|...|+.++.+                  
T Consensus       260 -liySgS~DrtIkvw~a~d---------------------G~~~r~-l-kGHahwvN~lalsTdy~LRtgaf~~t~~~~~  315 (480)
T KOG0271|consen  260 -LIYSGSQDRTIKVWRALD---------------------GKLCRE-L-KGHAHWVNHLALSTDYVLRTGAFDHTGRKPK  315 (480)
T ss_pred             -eEEecCCCceEEEEEccc---------------------hhHHHh-h-cccchheeeeeccchhhhhccccccccccCC
Confidence             689999999999996533                     333221 1 3455555554443                  


Q ss_pred             --------------------CCEEEEEe-CCeEEEEeCC-CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 005342          516 --------------------GSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC  572 (701)
Q Consensus       516 --------------------~~~l~s~s-dg~I~iwd~~-~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd  572 (701)
                                          ++.+++|+ |.++.+|+-. +.+++..+.+|..-|..+.||||+ +||+++.|..|++||
T Consensus       316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD  395 (480)
T ss_pred             ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence                                34699999 8999999965 445888999999999999999999 999999999999999


Q ss_pred             CCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE
Q 005342          573 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  652 (701)
Q Consensus       573 ~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l  652 (701)
                      .++|+.+.+|+||-+.|..++|+.|.++|+|||.|.++++||+++.+.     ...++ ||.   ..|.++.|+|||..+
T Consensus       396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-----~~DLp-Gh~---DEVf~vDwspDG~rV  466 (480)
T KOG0271|consen  396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-----KQDLP-GHA---DEVFAVDWSPDGQRV  466 (480)
T ss_pred             CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-----cccCC-CCC---ceEEEEEecCCCcee
Confidence            999999999999999999999999999999999999999999999532     12233 565   899999999999999


Q ss_pred             EEE-ecCeEEEEE
Q 005342          653 LSI-HEGQIDVYE  664 (701)
Q Consensus       653 ~sg-~Dg~I~iwd  664 (701)
                      ++| .|..+++|.
T Consensus       467 ~sggkdkv~~lw~  479 (480)
T KOG0271|consen  467 ASGGKDKVLRLWR  479 (480)
T ss_pred             ecCCCceEEEeec
Confidence            996 899999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.1e-38  Score=313.20  Aligned_cols=299  Identities=13%  Similarity=0.106  Sum_probs=247.7

Q ss_pred             cCcceeeeEEEEccC--------CCCCeEEEEeccCC--ccccccccccCCCCCCCCCCcccccCCCCCCCcccc---CC
Q 005342          326 IMDWWVPYCINVMPN--------ANNETISLKDFPTV--SNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN---DN  392 (701)
Q Consensus       326 h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~---~h  392 (701)
                      |...|.  +.+|+|-        +.|.+.++|++...  .+...+         .-.|+.          ..|.+   ..
T Consensus       177 ~~~~V~--~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~---------~lrh~~----------~~~~~s~~~n  235 (524)
T KOG0273|consen  177 HESEVF--ICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL---------VLRHCI----------REGGKSVPSN  235 (524)
T ss_pred             CCCceE--EEecCchhhhhhhccCCccceeeeeehhhccccchhh---------hhhhhh----------hhhcccCCcc
Confidence            888999  9999997        78999999999752  111110         011111          11111   22


Q ss_pred             CceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342          393 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  472 (701)
Q Consensus       393 ~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  472 (701)
                      ..|++++|+.+|..||+|+.||.+++|+..    .+...    .+..|.++|.++.|+.+|.||++++.||++.+||   
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~----G~l~~----tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd---  304 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD----GNLIS----TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWD---  304 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecC----chhhh----hhhccCCceEEEEEcCCCCEEEeccCCccEEEEe---
Confidence            339999999999999999999999999986    44322    3456999999999999999999999999999995   


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEE
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY  550 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~  550 (701)
                                        ..+|+..+. + .-|..+-.++.|- ...+++++ |+.|+++-+....++.++.+|..+|.+
T Consensus       305 ------------------~~~g~~~q~-f-~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~a  364 (524)
T KOG0273|consen  305 ------------------AHTGTVKQQ-F-EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNA  364 (524)
T ss_pred             ------------------ccCceEEEe-e-eeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEE
Confidence                              466665543 2 3466665678888 77888888 999999999888999999999999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC---------CEEEEEeCCCeEEEEECCCCee
Q 005342          551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---------NVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg---------~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      +.|.|.| +|+++|.|++++||++......+.+.+|...|..+.|+|+|         ..+++++.|++|++||+..|.+
T Consensus       365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~  444 (524)
T KOG0273|consen  365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP  444 (524)
T ss_pred             EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce
Confidence            9999999 99999999999999999999999999999999999999965         4789999999999999999853


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~  685 (701)
                      +     ..+. .|+   .+|++++|||+|+++|+| .||.|.||++++++.++++.+   |..++|+..
T Consensus       445 i-----~~f~-kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~  504 (524)
T KOG0273|consen  445 I-----HTLM-KHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAA  504 (524)
T ss_pred             e-----Eeec-cCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCC
Confidence            3     3233 454   899999999999999998 799999999999999999998   899999744

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.8e-39  Score=315.17  Aligned_cols=270  Identities=16%  Similarity=0.174  Sum_probs=237.6

Q ss_pred             ecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eE
Q 005342          325 QIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SR  396 (701)
Q Consensus       325 ~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~  396 (701)
                      +.+.++.  .+.||+|       +-+|.++||+..+...+.+                             |.||.. |.
T Consensus       173 gd~rPis--~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~-----------------------------l~gH~~~v~  221 (459)
T KOG0272|consen  173 GDTRPIS--GCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQT-----------------------------LRGHTSRVG  221 (459)
T ss_pred             cCCCcce--eeEeecCCCeEEEeecCCceeEeecCCcceeEE-----------------------------Eecccccee
Confidence            4456777  8999998       8899999999988755554                             467888 99


Q ss_pred             EEEEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          397 ESTSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       397 ~l~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      ++.|+|.  +..+|||+.||++++|++.    ......   .+.+|..+|..++|+|+|++|++++.|.+-++||+    
T Consensus       222 ~~~fhP~~~~~~lat~s~Dgtvklw~~~----~e~~l~---~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~----  290 (459)
T KOG0272|consen  222 AAVFHPVDSDLNLATASADGTVKLWKLS----QETPLQ---DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL----  290 (459)
T ss_pred             eEEEccCCCccceeeeccCCceeeeccC----CCcchh---hhhcchhhheeeeecCCCceeeecccccchhhccc----
Confidence            9999997  6799999999999999997    332222   45679999999999999999999999999999966    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF  551 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l  551 (701)
                                       .++..+-  ...+|...|.+++|.  |..+++|+ |..-+|||+++|+++..+.+|..+|.++
T Consensus       291 -----------------~tk~ElL--~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V  351 (459)
T KOG0272|consen  291 -----------------ETKSELL--LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSV  351 (459)
T ss_pred             -----------------ccchhhH--hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeE
Confidence                             4444221  336999999999999  99999999 9999999999999999999999999999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342          552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  629 (701)
Q Consensus       552 ~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~  629 (701)
                      +|+|+| .+|+|+.|++++|||++....+.++.+|.+-|+.|.|+| .|.+|+|+|.|++++||...++.     +++ .
T Consensus       352 ~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~-----~~k-s  425 (459)
T KOG0272|consen  352 AFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS-----PLK-S  425 (459)
T ss_pred             eECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc-----cch-h
Confidence            999999 999999999999999999999999999999999999999 78899999999999999999975     333 3


Q ss_pred             cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          630 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       630 ~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                      ..||.   +.|.++.++||+.+++++ .|+++++|.
T Consensus       426 LaGHe---~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  426 LAGHE---GKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hcCCc---cceEEEEeccCCceEEEeccCceeeecc
Confidence            33776   999999999999999995 899999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.5e-36  Score=282.08  Aligned_cols=272  Identities=14%  Similarity=0.141  Sum_probs=236.7

Q ss_pred             ccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342          387 SCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH  465 (701)
Q Consensus       387 ~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i  465 (701)
                      ..|+||.+ |.++.|++|++++++++.||.+.|||..+   +.+.+.+.+    ...-|..++|+|.|+++++|+-|+..
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~T---tnK~haipl----~s~WVMtCA~sPSg~~VAcGGLdN~C  121 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFT---TNKVHAIPL----PSSWVMTCAYSPSGNFVACGGLDNKC  121 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccc---ccceeEEec----CceeEEEEEECCCCCeEEecCcCcee
Confidence            35789999 99999999999999999999999999974   455555555    46789999999999999999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFAN  543 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~  543 (701)
                      .||++.+.                |.+....+.+.+ .+|.+.+.|..|- +..|++++ |.+..+||+++++.+..|.+
T Consensus       122 siy~ls~~----------------d~~g~~~v~r~l-~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G  184 (343)
T KOG0286|consen  122 SIYPLSTR----------------DAEGNVRVSREL-AGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG  184 (343)
T ss_pred             EEEecccc----------------cccccceeeeee-cCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC
Confidence            99988542                212222333334 5899999999999 88899998 99999999999999999999


Q ss_pred             CCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          544 PPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       544 ~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      |.+.|.+++++| ++ .+++|+-|+..++||++.+..+++|.||.+.|+++.|.|+|.-+++||+|+++++||++....+
T Consensus       185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~  264 (343)
T KOG0286|consen  185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL  264 (343)
T ss_pred             CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE
Confidence            999999999999 77 9999999999999999999999999999999999999999999999999999999999997543


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEEee
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVVKF  689 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~~f  689 (701)
                      ....       |.+...+|++++||..|++|.+| .|.++.+||.-+++.+..+.|    |+.+..+|+...+
T Consensus       265 a~ys-------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av  330 (343)
T KOG0286|consen  265 AVYS-------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAV  330 (343)
T ss_pred             eeec-------cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEE
Confidence            3221       11112789999999999999997 899999999999999999999    9999999986554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-36  Score=281.70  Aligned_cols=293  Identities=16%  Similarity=0.175  Sum_probs=236.8

Q ss_pred             ceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF  389 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l  389 (701)
                      .+..++++|+++|.  .++..+.        +.|.++.+|++.......             |.           +..-|
T Consensus         6 ~l~~tl~gh~d~Vt--~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~-------------G~-----------~~r~~   59 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVT--ALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY-------------GV-----------PVRRL   59 (315)
T ss_pred             eeeeeecCCCceEE--EEEeecCCCceEEEcccceEEEEEEeccCcccc-------------Cc-----------eeeee
Confidence            34567899999999  7777665        899999999997653221             11           23337


Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      .||.. |..+..++||++.++++.|+++++||+.    +++...   .+.+|...|.+++|+||.+.+++|+.|+++++|
T Consensus        60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~----~g~~t~---~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw  132 (315)
T KOG0279|consen   60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA----TGESTR---RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW  132 (315)
T ss_pred             eccceEecceEEccCCceEEeccccceEEEEEec----CCcEEE---EEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence            78998 9999999999999999999999999998    665544   445799999999999999999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFAN  543 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~~~~~~~  543 (701)
                      |.                     ..+...+. -...+...|.|+.|+    ..+|++++ |+++++||+++.+....+.+
T Consensus       133 nt---------------------~g~ck~t~-~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g  190 (315)
T KOG0279|consen  133 NT---------------------LGVCKYTI-HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG  190 (315)
T ss_pred             ee---------------------cccEEEEE-ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc
Confidence            75                     33332221 112347899999999    45789999 99999999999999999999


Q ss_pred             CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                      |.+.++.+++|||| +.++|+.||.+.+||++.++.+..+. |...|++++|+|+..+|+.+. +..|+|||+.++..+.
T Consensus       191 h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~  268 (315)
T KOG0279|consen  191 HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVE  268 (315)
T ss_pred             ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhh
Confidence            99999999999999 99999999999999999999988876 888999999999987777555 4569999999976554


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      ...+...-...........+++|++||..|++| .|+.|++|.+..
T Consensus       269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            333331111011112456789999999999999 899999999753

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.2e-37  Score=299.52  Aligned_cols=247  Identities=15%  Similarity=0.169  Sum_probs=224.4

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDA  377 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (701)
                      |.+++|++++...+.++.+|...+.  ++.|+|.         +.||++++|++.+...+..                  
T Consensus       197 G~~kvW~~~~~~~~~~l~gH~~~v~--~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~------------------  256 (459)
T KOG0272|consen  197 GLVKVWSVPQCNLLQTLRGHTSRVG--AAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD------------------  256 (459)
T ss_pred             CceeEeecCCcceeEEEecccccee--eEEEccCCCccceeeeccCCceeeeccCCCcchhh------------------
Confidence            9999999999999999999999999  9999997         8999999999988776665                  


Q ss_pred             ccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342          378 SSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL  456 (701)
Q Consensus       378 s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l  456 (701)
                                 |.+|.. |..++|+|+|++|+|++.|.+-++||+.    ++....   -..+|...|.+++|.|||..+
T Consensus       257 -----------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~----tk~ElL---~QEGHs~~v~~iaf~~DGSL~  318 (459)
T KOG0272|consen  257 -----------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE----TKSELL---LQEGHSKGVFSIAFQPDGSLA  318 (459)
T ss_pred             -----------hhcchhhheeeeecCCCceeeecccccchhhcccc----cchhhH---hhcccccccceeEecCCCcee
Confidence                       346677 9999999999999999999999999998    443222   335799999999999999999


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE  533 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~  533 (701)
                      ++||.|..-+|||+                     .+|.++-  +..+|..+|.+++|+  |..+++|+ |++++|||++
T Consensus       319 ~tGGlD~~~RvWDl---------------------Rtgr~im--~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR  375 (459)
T KOG0272|consen  319 ATGGLDSLGRVWDL---------------------RTGRCIM--FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR  375 (459)
T ss_pred             eccCccchhheeec---------------------ccCcEEE--EecccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence            99999999999955                     6666443  225899999999999  88899999 9999999999


Q ss_pred             CCcEEEEecCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342          534 TFQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC  611 (701)
Q Consensus       534 ~~~~~~~~~~~~~~i~~l~~spd-g-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~  611 (701)
                      ..+.+.++.+|..-|+.+.|+|+ | +|++++.|++++||..++..+++.+.||.+.|.+++++||+++++|++.|.+|+
T Consensus       376 ~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~K  455 (459)
T KOG0272|consen  376 MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIK  455 (459)
T ss_pred             ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceee
Confidence            99999999999999999999994 4 999999999999999999999999999999999999999999999999999999


Q ss_pred             EEE
Q 005342          612 VWD  614 (701)
Q Consensus       612 vwd  614 (701)
                      +|.
T Consensus       456 LW~  458 (459)
T KOG0272|consen  456 LWR  458 (459)
T ss_pred             ecc
Confidence            995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.9e-34  Score=268.38  Aligned_cols=282  Identities=14%  Similarity=0.166  Sum_probs=240.7

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      +..++|++|.+.|.  ++.|++|       +.||.+.|||..|......+                             .
T Consensus        46 ~~rr~LkGH~~Ki~--~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-----------------------------p   94 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIY--AMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-----------------------------P   94 (343)
T ss_pred             eeEEEeccccccee--eeEecCCcCeEEeeccCCeEEEEEcccccceeEE-----------------------------e
Confidence            44478999999999  9999999       99999999999887665552                             1


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      -... |...+|+|.|+++|+|+-|....||++......+... +.-.+.+|.+.+.|+.|.+|+ .|+++|.|.+..+||
T Consensus        95 l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~-v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWD  172 (343)
T KOG0286|consen   95 LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR-VSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWD  172 (343)
T ss_pred             cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce-eeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEE
Confidence            2234 8899999999999999999999999997432222222 222456899999999999866 589999999999995


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPP  545 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~  545 (701)
                      +                     ++|+..+. + .+|.+.|.+++++   ++.+++|+ |+..++||++.+.++++|.+|.
T Consensus       173 i---------------------e~g~~~~~-f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe  229 (343)
T KOG0286|consen  173 I---------------------ETGQQTQV-F-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE  229 (343)
T ss_pred             c---------------------ccceEEEE-e-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccc
Confidence            5                     66665543 3 5899999999998   88999999 9999999999999999999999


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                      +.|++++|.|+| -+++|++|++.++||++..+.+..+..  ...+|++++||..|++|.+|..|.++.|||.-.++...
T Consensus       230 sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg  309 (343)
T KOG0286|consen  230 SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG  309 (343)
T ss_pred             cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE
Confidence            999999999999 999999999999999999998888873  23489999999999999999999999999998876332


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                            ...||.   +.|.++..+|||.-+++| .|.+++||.
T Consensus       310 ------~L~GHe---NRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  310 ------VLAGHE---NRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ------EeeccC---CeeEEEEECCCCcEEEecchhHheeecC
Confidence                  333776   999999999999999996 899999994

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-36  Score=296.69  Aligned_cols=425  Identities=14%  Similarity=0.170  Sum_probs=295.9

Q ss_pred             cchhhhhhHhhhccchhhhhhhhhhccCccc---ccccccccccccccccccccccccccccccccccchhhccccccee
Q 005342          195 KEELIYLIHQFLNEEEFKETLHKLEQETRVF---FDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKY  271 (701)
Q Consensus       195 ~~~~~~l~~q~l~~~~~~~~~~~l~~es~~~---~~~~~~~~~i~~g~~~~~e~~l~~~~~~~~~~~s~~~~~~~~~q~~  271 (701)
                      +.|+++++.|+|+++||.++...+|.|+|+-   .++..|..+++.|+|+.++.-+......+ ....+...|.+.+|+|
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f   95 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF   95 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence            5699999999999999999999999999988   44889999999999999998777443222 3334444558999999


Q ss_pred             eeeeccc---cccccccc-----------------------c---------------cccccccchhhhhhcccccCccc
Q 005342          272 LEAVDRQ---QKLPSDFA-----------------------E---------------RAHLFDDFKVLVERNPMLQDKLK  310 (701)
Q Consensus       272 ~~~~~~~---~~~~~~~~-----------------------d---------------r~~~~~~~~~l~~~~~~la~~i~  310 (701)
                      +|.+...   +++.....                       +               |-.+++.+.++++.+-++     
T Consensus        96 LEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~ill-----  170 (519)
T KOG0293|consen   96 LEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILL-----  170 (519)
T ss_pred             HHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhcC-----
Confidence            9887322   00000000                       0               333333333333333222     


Q ss_pred             ccccCccceeEEEeecCcceeeeEEEEccCCCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          311 FPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       311 iwd~~~~~~~~~l~~h~~~v~~~~l~fspds~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                          +.+++.+.+++........|+ |+. +-|. +.++  ....|         ....++..           +.+.+.
T Consensus       171 ----P~rRLehLl~qAv~~Q~d~cv-yhn-slds-vsll--~Dh~c---------~~~qip~q-----------t~qil~  221 (519)
T KOG0293|consen  171 ----PKRRLEHLLEQAVKYQRDSCV-YHN-SLDS-VSLL--SDHFC---------GRLQIPSQ-----------TWQILQ  221 (519)
T ss_pred             ----ChHHHHHHHHHHHHHHHhHhH-Hhc-ccch-hhhh--hhccc---------CcccCCch-----------hhhhHh
Confidence                233444444332222221111 100 0010 1100  00111         00111111           455688


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      .|.+ ||.+.||++|++||+++.|.+..+|.+..    ....++..+..+|..+|..+.||||.+++++|+.|..+.+||
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~----d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY----DVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD  297 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec----CcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence            9999 99999999999999999999999999863    222444446678999999999999999999999999999995


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC-C
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-P  545 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~-~  545 (701)
                      .                     .+|.+... +..++...+.+.+|.  |..+++|+ |++|..||+. |......++. .
T Consensus       298 v---------------------~tgd~~~~-y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~  354 (519)
T KOG0293|consen  298 V---------------------DTGDLRHL-YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD  354 (519)
T ss_pred             C---------------------Ccchhhhh-cccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc
Confidence            5                     55554432 333556788899998  88999999 9999999995 4444444443 3


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      ..|.+++.++|| ++++.+.|..|++++..+........ ...+|++.+.|.||+++.+.-.+..|++||++....    
T Consensus       355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l----  429 (519)
T KOG0293|consen  355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL----  429 (519)
T ss_pred             ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH----
Confidence            568999999999 88888899999999988766554444 446899999999999999999999999999996422    


Q ss_pred             eeeeccCCCCCCCCCeEEEEEc-CCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEEee
Q 005342          625 FLHSFQTGLVPETTIVNHIQFH-PDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVVKF  689 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~s-pdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~~f  689 (701)
                       +.... ||... .-+..-+|. -+..++++| .|+.|+||+-.+|+++.+++|    |+.++|+|....+
T Consensus       430 -v~kY~-Ghkq~-~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m  497 (519)
T KOG0293|consen  430 -VRKYF-GHKQG-HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEM  497 (519)
T ss_pred             -HHHhh-ccccc-ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHH
Confidence             22122 33211 234444454 455888887 899999999999999999999    9999999886644

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.6e-34  Score=260.50  Aligned_cols=268  Identities=14%  Similarity=0.180  Sum_probs=224.1

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc--eEEEEEcCCCCeEEEEcCCCcEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ--SRESTSLPDADSAVCAKSLEKSVN  418 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~--V~~l~~spdg~~l~s~s~d~~v~i  418 (701)
                      +.|.|||+|...+|.|.+++                              .|..  |+.+...||++.||+++. ..|++
T Consensus        17 ~YDhTIRfWqa~tG~C~rTi------------------------------qh~dsqVNrLeiTpdk~~LAaa~~-qhvRl   65 (311)
T KOG0315|consen   17 GYDHTIRFWQALTGICSRTI------------------------------QHPDSQVNRLEITPDKKDLAAAGN-QHVRL   65 (311)
T ss_pred             cCcceeeeeehhcCeEEEEE------------------------------ecCccceeeEEEcCCcchhhhccC-CeeEE
Confidence            67999999999999999985                              3444  999999999999999988 78999


Q ss_pred             EeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342          419 LKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT  498 (701)
Q Consensus       419 w~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~  498 (701)
                      ||++..+.    ..+ ..+.+|.+.|+++.|.-||+.+++||.||+++|||++..                     .+. 
T Consensus        66 yD~~S~np----~Pv-~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~---------------------~~q-  118 (311)
T KOG0315|consen   66 YDLNSNNP----NPV-ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL---------------------SCQ-  118 (311)
T ss_pred             EEccCCCC----Cce-eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc---------------------ccc-
Confidence            99984322    121 144578999999999999999999999999999987431                     111 


Q ss_pred             ecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 005342          499 NDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCP  573 (701)
Q Consensus       499 ~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~  573 (701)
                      +.+  .|..+|+++..+  ...|++|. +|.|++||+.+..+...+. .....|.++.+.||| +++.+...|..++|++
T Consensus       119 R~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l  196 (311)
T KOG0315|consen  119 RNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL  196 (311)
T ss_pred             hhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence            112  467899999999  55788888 8999999998887666554 335678999999999 9999999999999998


Q ss_pred             CCC------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC
Q 005342          574 CTK------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP  647 (701)
Q Consensus       574 ~~~------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp  647 (701)
                      -+.      +++.+++.|++.+..+.+|||+++||++|.|.+++||+..+. ......+.    +|.   ..++..+||.
T Consensus       197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~----gh~---rWvWdc~FS~  268 (311)
T KOG0315|consen  197 LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLT----GHQ---RWVWDCAFSA  268 (311)
T ss_pred             cCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEee----cCC---ceEEeeeecc
Confidence            754      456778899999999999999999999999999999999985 12222333    665   8999999999


Q ss_pred             CCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          648 DQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       648 dg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ||.||+++ .|+.+++|++..++.++.+.+
T Consensus       269 dg~YlvTassd~~~rlW~~~~~k~v~qy~g  298 (311)
T KOG0315|consen  269 DGEYLVTASSDHTARLWDLSAGKEVRQYQG  298 (311)
T ss_pred             CccEEEecCCCCceeecccccCceeeecCC
Confidence            99999996 899999999999999999988

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-34  Score=277.13  Aligned_cols=279  Identities=16%  Similarity=0.205  Sum_probs=243.9

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      .+.+.+.+|...|+  .+-|.|+       +.|.+|++||..+|++.+.                             |+
T Consensus        99 ~l~~~l~g~r~~vt--~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~-----------------------------Lr  147 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVT--RVIFHPSEALVVSASEDATIKVFDTETGELERS-----------------------------LR  147 (406)
T ss_pred             Cchhhhhcccccee--eeeeccCceEEEEecCCceEEEEEccchhhhhh-----------------------------hh
Confidence            45566778999999  9999999       6899999999999998666                             35


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      ||.+ |..++|+..|+++|+++.|-.+++||.++   ..+|.+   ...+|...|.++.|-|.|.++++++.|.+|+.|+
T Consensus       148 GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~---~~~c~k---s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We  221 (406)
T KOG0295|consen  148 GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT---FFRCIK---SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE  221 (406)
T ss_pred             ccccceeEEEEecCccEEEecCCccchhheeHHH---HHHHHH---HhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence            7777 99999999999999999999999999973   234444   4457899999999999999999999999999995


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP  546 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~  546 (701)
                      +                     ++|.++.. + .+|...|..++.+  |..+++++ |.++++|-+.++++...+..|..
T Consensus       222 ~---------------------~tg~cv~t-~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh  278 (406)
T KOG0295|consen  222 C---------------------DTGYCVKT-F-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEH  278 (406)
T ss_pred             c---------------------ccceeEEe-c-cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcccc
Confidence            4                     77776653 4 5888999999999  88889999 99999999999999899999999


Q ss_pred             CeEEEEEcC--------------CC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342          547 IATYFILLP--------------QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL  610 (701)
Q Consensus       547 ~i~~l~~sp--------------dg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I  610 (701)
                      +|-+++|.|              ++  ++.+++.|++|++||+.++.++.++.||...|..++|+|.|+||+|+.+|+++
T Consensus       279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktl  358 (406)
T KOG0295|consen  279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTL  358 (406)
T ss_pred             ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcE
Confidence            999999876              23  78999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       611 ~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      +|||++++.  |.+.+.    .|.   .-|+++.|+.+..++++| -|.++++|..
T Consensus       359 rvwdl~~~~--cmk~~~----ah~---hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  359 RVWDLKNLQ--CMKTLE----AHE---HFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEEEeccce--eeeccC----CCc---ceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999964  333333    443   789999999999999997 6999999974

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=8.9e-33  Score=277.81  Aligned_cols=349  Identities=15%  Similarity=0.172  Sum_probs=260.1

Q ss_pred             CcccccccCccc-ee-EEEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342          307 DKLKFPSMDKSR-LL-SLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL  375 (701)
Q Consensus       307 ~~i~iwd~~~~~-~~-~~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (701)
                      ++|+|||....+ .+ ..++.-.+.|.  .++|++|         +.++...++-+.+|...-.          +.||..
T Consensus        81 G~vRIWdtt~~~hiLKnef~v~aG~I~--Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGe----------i~GhSr  148 (603)
T KOG0318|consen   81 GKVRIWDTTQKEHILKNEFQVLAGPIK--DISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGE----------ITGHSR  148 (603)
T ss_pred             CcEEEEeccCcceeeeeeeeecccccc--cceeCCCCcEEEEEecCccceeEEEEecCCCccce----------eeccce
Confidence            999999987632 22 45666778899  9999999         4444444444445554444          445544


Q ss_pred             --------------ccccCC-CC------CCCcc---ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCce
Q 005342          376 --------------DASSGD-DS------NDSSC---FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC  430 (701)
Q Consensus       376 --------------~~s~~D-~~------~~~~~---l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~  430 (701)
                                    +++++| .+      ++...   ++.|.. |+++.|+|||.++|+++.||++.+||=.    +++.
T Consensus       149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk----tge~  224 (603)
T KOG0318|consen  149 RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK----TGEK  224 (603)
T ss_pred             eEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC----CccE
Confidence                          666663 33      12222   778999 9999999999999999999999999987    4433


Q ss_pred             e-EeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc----ccccccc--------------ce----eeE
Q 005342          431 R-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ----SLEEENV--------------NM----ESQ  487 (701)
Q Consensus       431 ~-~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~----~~g~~~~--------------~~----~i~  487 (701)
                      . .+. ...+|.+.|.+++|+||+..+++++.|.+++|||+.+...    +.|..+.              .+    .+.
T Consensus       225 vg~l~-~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in  303 (603)
T KOG0318|consen  225 VGELE-DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN  303 (603)
T ss_pred             EEEec-CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence            2 222 2347999999999999999999999999999999988876    1222111              11    255


Q ss_pred             EeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEE-----------EEec-----------
Q 005342          488 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-----------ATFA-----------  542 (701)
Q Consensus       488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~-----------~~~~-----------  542 (701)
                      .+++.......  ...+|...|++++.+  +.+|++|+ ||.|.-||..++..-           ..+.           
T Consensus       304 ~ln~~d~~~~~--~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g  381 (603)
T KOG0318|consen  304 YLNPSDPSVLK--VISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG  381 (603)
T ss_pred             EecccCCChhh--eecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence            66666666332  236999999999999  89999999 999999998755321           0000           


Q ss_pred             -----------------------------------------------------------CCCCCeEEEEEcCCC-eEEEE
Q 005342          543 -----------------------------------------------------------NPPPIATYFILLPQD-LFAFG  562 (701)
Q Consensus       543 -----------------------------------------------------------~~~~~i~~l~~spdg-~l~~g  562 (701)
                                                                                 ...-...+++++|++ .+++|
T Consensus       382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG  461 (603)
T KOG0318|consen  382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG  461 (603)
T ss_pred             cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence                                                                       001123678899999 99999


Q ss_pred             eCCCcEEEEeCCCCceEE--eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342          563 FDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV  640 (701)
Q Consensus       563 s~dg~I~iwd~~~~~~~~--~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v  640 (701)
                      +.||.|++|.+..+....  .+..|.++|+++++|||+.|||+|...+.+.+||+.+.+... ..   . ..|+   ..|
T Consensus       462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~---w-~FHt---akI  533 (603)
T KOG0318|consen  462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT-NR---W-AFHT---AKI  533 (603)
T ss_pred             cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec-ce---e-eeee---eeE
Confidence            999999999998765432  345599999999999999999999999999999999975311 11   2 2354   899


Q ss_pred             EEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-----eeEEEE
Q 005342          641 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-----ISHIMF  682 (701)
Q Consensus       641 ~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-----i~~~~f  682 (701)
                      ++++|+|++.++|+| -|..|.||++.+-...-.+.+     |+++.|
T Consensus       534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~w  581 (603)
T KOG0318|consen  534 NCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAW  581 (603)
T ss_pred             EEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEE
Confidence            999999999999997 799999999987554444444     888888

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.9e-33  Score=292.00  Aligned_cols=259  Identities=16%  Similarity=0.219  Sum_probs=216.2

Q ss_pred             ccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc---cC-----
Q 005342          316 KSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS---SG-----  380 (701)
Q Consensus       316 ~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~-----  380 (701)
                      +.-|..++......+.  |..|++|       -.|..|++|.+...+...           +++...+.-   .+     
T Consensus       367 pSic~YT~~nt~~~v~--ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~-----------lk~~~~l~~~d~~sad~~~  433 (707)
T KOG0263|consen  367 PSICMYTFHNTYQGVT--CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK-----------LKDASDLSNIDTESADVDV  433 (707)
T ss_pred             CcEEEEEEEEcCCcce--eEeecCCcchhhccccccEEEEEecchhhhcc-----------ccchhhhccccccccchhh
Confidence            4456666666666688  9999999       688999999998653211           111111000   00     


Q ss_pred             ---CCC--CCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC
Q 005342          381 ---DDS--NDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD  454 (701)
Q Consensus       381 ---D~~--~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~  454 (701)
                         |..  .+...+.||.+ |....|+|+.++|++|+.|+++++|.+.    +..+..   .+.+|..+|+++.|+|-|-
T Consensus       434 ~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~----t~s~~V---~y~GH~~PVwdV~F~P~Gy  506 (707)
T KOG0263|consen  434 DMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD----TWSCLV---IYKGHLAPVWDVQFAPRGY  506 (707)
T ss_pred             hhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecc----cceeEE---EecCCCcceeeEEecCCce
Confidence               111  12333889999 9999999999999999999999999998    555554   4468999999999999999


Q ss_pred             EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEe
Q 005342          455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS  531 (701)
Q Consensus       455 ~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd  531 (701)
                      |++++|.|++-++|...                     ......  +..+|.+.|.|+.|+  ..++++|+ |.++++||
T Consensus       507 YFatas~D~tArLWs~d---------------------~~~PlR--ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWD  563 (707)
T KOG0263|consen  507 YFATASHDQTARLWSTD---------------------HNKPLR--IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWD  563 (707)
T ss_pred             EEEecCCCceeeeeecc---------------------cCCchh--hhcccccccceEEECCcccccccCCCCceEEEEE
Confidence            99999999999999652                     222221  225899999999999  88999999 99999999


Q ss_pred             CCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342          532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL  610 (701)
Q Consensus       532 ~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I  610 (701)
                      ..+|..++.|.||.++|.+++|||+| ++++|++||.|.+||+.+++.+..+.+|++.|.++.||.||..||+||.|++|
T Consensus       564 v~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV  643 (707)
T KOG0263|consen  564 VSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSV  643 (707)
T ss_pred             cCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeE
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCC
Q 005342          611 CVWDAVG  617 (701)
Q Consensus       611 ~vwd~~~  617 (701)
                      ++||+..
T Consensus       644 ~lWD~~~  650 (707)
T KOG0263|consen  644 RLWDLTK  650 (707)
T ss_pred             EEEEchh
Confidence            9999876

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.4e-33  Score=292.47  Aligned_cols=330  Identities=15%  Similarity=0.197  Sum_probs=259.8

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCcc-ccccccccCCCCCCCCCCcc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSN-LRYASSILTDKPNQEGRPLD  376 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~  376 (701)
                      +.+++||+..+.+.+.+++|++.|+  .+.|+|+         ..|+++++||+.++.. +.+                 
T Consensus       127 ~~v~VWdi~~~~~th~fkG~gGvVs--sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~-----------------  187 (775)
T KOG0319|consen  127 GRVKVWDIKNGYCTHSFKGHGGVVS--SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHT-----------------  187 (775)
T ss_pred             ceEEEEEeeCCEEEEEecCCCceEE--EEEeCCccchhheeecCCCceEEEEEcccCchHHHH-----------------
Confidence            9999999999999999999999999  9999999         7899999999986543 333                 


Q ss_pred             cccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC---
Q 005342          377 ASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS---  452 (701)
Q Consensus       377 ~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd---  452 (701)
                                  +..|.+ |++++|++|+..+++++.|..+.+||+.    ..++.. .+|   -...+.++.+-++   
T Consensus       188 ------------~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~----~~~~l~-~lp---~ye~~E~vv~l~~~~~  247 (775)
T KOG0319|consen  188 ------------MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV----QYKKLK-TLP---LYESLESVVRLREELG  247 (775)
T ss_pred             ------------HHhhhhheeeeeeccCCceEEEeccCcEEEEeehh----hhhhhh-eec---hhhheeeEEEechhcC
Confidence                        357888 9999999999999999999999999996    222222 122   1356777777777   


Q ss_pred             --CCEEEEEECCCcEEEEecCCCCc------cccccccc----------------e------------------------
Q 005342          453 --GDFLVALTQTATHKLWKWQSNKQ------SLEEENVN----------------M------------------------  484 (701)
Q Consensus       453 --g~~l~s~s~dg~i~vwd~~~~~~------~~g~~~~~----------------~------------------------  484 (701)
                        |.+++++|.+|.+++||.++...      +++.....                -                        
T Consensus       248 ~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~  327 (775)
T KOG0319|consen  248 GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEIL  327 (775)
T ss_pred             CcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhe
Confidence              67999999999999999887765      11110000                0                        


Q ss_pred             -------------------eeEEeeCCCCeEEeecccCCCCCCeEEEE-ec-CCEEEEEe-CCeEEEEeCCCCcE----E
Q 005342          485 -------------------ESQLYQPSSKLVMTNDIAADPKDSISCFA-LR-GSHLFSAS-GGKISIFSLETFQT----L  538 (701)
Q Consensus       485 -------------------~i~~~d~~~~~~~~~~~~~~~~~~v~~l~-~s-~~~l~s~s-dg~I~iwd~~~~~~----~  538 (701)
                                         .+++|+..+..+.   +..+|...|.++. ++ |.+|++|+ |.++++|-++++..    +
T Consensus       328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~  404 (775)
T KOG0319|consen  328 DMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV  404 (775)
T ss_pred             eeeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhh
Confidence                               0455554444433   2246777777776 33 66777777 77777775522110    0


Q ss_pred             ----------------------------------------------------EEecCCCCCeEEEEEcCCC-eEEEEeCC
Q 005342          539 ----------------------------------------------------ATFANPPPIATYFILLPQD-LFAFGFDD  565 (701)
Q Consensus       539 ----------------------------------------------------~~~~~~~~~i~~l~~spdg-~l~~gs~d  565 (701)
                                                                          .+...|...|++++++|+. +||+||.|
T Consensus       405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD  484 (775)
T KOG0319|consen  405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD  484 (775)
T ss_pred             hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence                                                                0112467788999999999 99999999


Q ss_pred             CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEE
Q 005342          566 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF  645 (701)
Q Consensus       566 g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~  645 (701)
                      .+.+||++.......++.||+..|++|.|+|..+.++|+|.|++|+||.+.+..  |.+.+.    ||.   ..|..++|
T Consensus       485 ktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS--ClkT~e----GH~---~aVlra~F  555 (775)
T KOG0319|consen  485 KTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS--CLKTFE----GHT---SAVLRASF  555 (775)
T ss_pred             cceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce--eeeeec----Ccc---ceeEeeee
Confidence            999999999999999999999999999999999999999999999999999965  444444    777   99999999


Q ss_pred             cCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342          646 HPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV  687 (701)
Q Consensus       646 spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~  687 (701)
                      -.+|+.|+++ .||-+++|++.+++|++++..    |.+++-+|..-
T Consensus       556 ~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~  602 (775)
T KOG0319|consen  556 IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD  602 (775)
T ss_pred             eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccc
Confidence            9999999995 899999999999999999998    77777766544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.5e-32  Score=285.00  Aligned_cols=329  Identities=17%  Similarity=0.210  Sum_probs=253.3

Q ss_pred             CcccccccCccce--eEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCC-----------------------
Q 005342          307 DKLKFPSMDKSRL--LSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTV-----------------------  354 (701)
Q Consensus       307 ~~i~iwd~~~~~~--~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~-----------------------  354 (701)
                      ..+++|++...+-  .+.+.+|.+.|.  .+.|..+       +.||.+.+|.....                       
T Consensus       167 ~s~rl~~v~~~k~~~~~~l~gHkd~Vv--acfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~  244 (893)
T KOG0291|consen  167 LSARLFGVDGNKNLFTYALNGHKDYVV--ACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDG  244 (893)
T ss_pred             ceEEEEEeccccccceEeccCCCcceE--EEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccc
Confidence            6788888877666  677899999999  9999988       99999999987621                       


Q ss_pred             cc-ccccccccCCCCCCCC----------CCc---ccccC-CCC---------CCCccccCCCc-eEEEEEcCCCCeEEE
Q 005342          355 SN-LRYASSILTDKPNQEG----------RPL---DASSG-DDS---------NDSSCFNDNNQ-SRESTSLPDADSAVC  409 (701)
Q Consensus       355 ~~-~~~~~~~~~~~~~~~~----------~~~---~~s~~-D~~---------~~~~~l~~h~~-V~~l~~spdg~~l~s  409 (701)
                      +. .....-.+.++..+..          |+.   ++++- .+.         +..++|.-... |..++|+..|..||.
T Consensus       245 Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~  324 (893)
T KOG0291|consen  245 EEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAF  324 (893)
T ss_pred             hhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEE
Confidence            00 0000000000001110          100   11111 000         12222433444 888999999999999


Q ss_pred             EcCC-CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEE
Q 005342          410 AKSL-EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQL  488 (701)
Q Consensus       410 ~s~d-~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~  488 (701)
                      |+.. |.+-+|+.+    .....   +...+|...+.++++||||+++++|+.||.|+|||                   
T Consensus       325 g~~klgQLlVweWq----sEsYV---lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn-------------------  378 (893)
T KOG0291|consen  325 GCSKLGQLLVWEWQ----SESYV---LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN-------------------  378 (893)
T ss_pred             cCCccceEEEEEee----cccee---eeccccccceeeEEECCCCcEEEeccCCCcEEEEe-------------------
Confidence            8765 789999987    33222   24467999999999999999999999999999994                   


Q ss_pred             eeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC-CCeEEEEEcCCC-eEEEEe
Q 005342          489 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGF  563 (701)
Q Consensus       489 ~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~spdg-~l~~gs  563 (701)
                        ..+|.|..+ + ..|...|+.+.|+  |+.+++.+ ||+|+.||+...+..++|..+. -...|++..|.| .+.+|+
T Consensus       379 --~~SgfC~vT-F-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~  454 (893)
T KOG0291|consen  379 --TQSGFCFVT-F-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA  454 (893)
T ss_pred             --ccCceEEEE-e-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence              477776643 4 5899999999999  99999999 9999999999999999998553 345899999999 999999


Q ss_pred             CCC-cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEE
Q 005342          564 DDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH  642 (701)
Q Consensus       564 ~dg-~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~  642 (701)
                      .|. .|++|++++|+.+..+.||.++|.+++|+|+|..|||+|.|.+|++||+-.... ..++++ +   .    ..+..
T Consensus       455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-~vEtl~-i---~----sdvl~  525 (893)
T KOG0291|consen  455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-TVETLE-I---R----SDVLA  525 (893)
T ss_pred             cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc-eeeeEe-e---c----cceeE
Confidence            888 799999999999999999999999999999999999999999999999977421 123443 1   1    77999


Q ss_pred             EEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          643 IQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       643 v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ++|+|||+.||++ -||.|.+||+..+..+.++.|
T Consensus       526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg  560 (893)
T KOG0291|consen  526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG  560 (893)
T ss_pred             EEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence            9999999999996 799999999988877766665

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-32  Score=256.18  Aligned_cols=265  Identities=15%  Similarity=0.180  Sum_probs=221.2

Q ss_pred             cccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccC-CCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342          388 CFNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT  464 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~-~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  464 (701)
                      .|++|++ |..++..+. ...+++++.|.++.+|++.... ..|...+   .+.+|...|..+..++||++.++++.|+.
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r---~~~GHsH~v~dv~~s~dg~~alS~swD~~   86 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVR---RLTGHSHFVSDVVLSSDGNFALSASWDGT   86 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceee---eeeccceEecceEEccCCceEEeccccce
Confidence            3789999 999999887 5688999999999999996431 2232233   45679999999999999999999999999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~  541 (701)
                      +++||+                     .+|+.... + .+|...|.+++++  ++.+++|+ |.+|.+||+... +..++
T Consensus        87 lrlWDl---------------------~~g~~t~~-f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~  142 (315)
T KOG0279|consen   87 LRLWDL---------------------ATGESTRR-F-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTI  142 (315)
T ss_pred             EEEEEe---------------------cCCcEEEE-E-EecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEE
Confidence            999966                     45443322 3 4899999999999  78899999 999999999554 44444


Q ss_pred             cCC--CCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342          542 ANP--PPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       542 ~~~--~~~i~~l~~spd--g-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~  616 (701)
                      ..+  ...|.|+.|+|+  . .|++++.|+++++||+++.+....+.||++.++.+++||||...++|+.||.+.+||++
T Consensus       143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~  222 (315)
T KOG0279|consen  143 HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN  222 (315)
T ss_pred             ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence            433  788999999999  4 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee-------------eeEEEEE
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL-------------ISHIMFV  683 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~-------------i~~~~fs  683 (701)
                      .++.     +..+  ++.   ..|++++|+|+..+|+.+.+..|+|||++++.++..+..             ..+++||
T Consensus       223 ~~k~-----lysl--~a~---~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws  292 (315)
T KOG0279|consen  223 EGKN-----LYSL--EAF---DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS  292 (315)
T ss_pred             CCce-----eEec--cCC---CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence            9863     3323  222   889999999999999988888899999999998887765             4577888


Q ss_pred             eeEEee
Q 005342          684 QIVVKF  689 (701)
Q Consensus       684 ~~~~~f  689 (701)
                      ++..-.
T Consensus       293 ~dG~tL  298 (315)
T KOG0279|consen  293 ADGQTL  298 (315)
T ss_pred             CCCcEE
Confidence            764433

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.1e-33  Score=296.34  Aligned_cols=244  Identities=16%  Similarity=0.203  Sum_probs=210.2

Q ss_pred             CCceEEEEEcCCCCeEEEEcCCCcEEEEeccccC-----CCCceeEe-------------------ecCCCCCCCCEEEE
Q 005342          392 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN-----EPSECRTL-------------------LLPDNSFGGRVVRL  447 (701)
Q Consensus       392 h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~-----~~~~~~~l-------------------~~~~~~~~~~v~~l  447 (701)
                      +..++|..|++|+..||.|-.|..|++|.+....     .......+                   .-.+.+|.++|..+
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            3449999999999999999999999999987210     00000000                   00123899999999


Q ss_pred             EEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C
Q 005342          448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G  524 (701)
Q Consensus       448 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d  524 (701)
                      .|+|+.++|+++|.|+++++|.+                     .+..++.  ...+|..+|+++.|+  |-++|+++ |
T Consensus       458 sFsPd~rfLlScSED~svRLWsl---------------------~t~s~~V--~y~GH~~PVwdV~F~P~GyYFatas~D  514 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSL---------------------DTWSCLV--IYKGHLAPVWDVQFAPRGYYFATASHD  514 (707)
T ss_pred             eecccccceeeccCCcceeeeec---------------------ccceeEE--EecCCCcceeeEEecCCceEEEecCCC
Confidence            99999999999999999999966                     4444332  225999999999999  99999999 9


Q ss_pred             CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342          525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       525 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s  603 (701)
                      ++.++|......+.+.+.+|-+.|.|+.|+|++ ++++||.|.++++||+.+|..++.|.||.++|.+++|||+|++||+
T Consensus       515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             ceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence            999999999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      |+.||.|.+||+.+|+++.  .   +. +|.   +.|.++.||.||..||+| .|++|++||+.+
T Consensus       595 g~ed~~I~iWDl~~~~~v~--~---l~-~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  595 GDEDGLIKIWDLANGSLVK--Q---LK-GHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             cccCCcEEEEEcCCCcchh--h---hh-ccc---CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            9999999999999986432  2   22 555   999999999999999996 899999999854

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.5e-31  Score=275.59  Aligned_cols=308  Identities=13%  Similarity=0.145  Sum_probs=250.2

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEcc--C------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMP--N------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS  378 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fsp--d------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  378 (701)
                      +...++.++.-.+++.+.-....|.  .++|+.  |      +.-|.+-||++++..-+..+                  
T Consensus       287 G~f~LyelP~f~lih~LSis~~~I~--t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ------------------  346 (893)
T KOG0291|consen  287 GEFGLYELPDFNLIHSLSISDQKIL--TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ------------------  346 (893)
T ss_pred             CeeEEEecCCceEEEEeecccceee--EEEecccCCEEEEcCCccceEEEEEeeccceeeec------------------
Confidence            7777999999999999988777888  888884  4      66789999999987665541                  


Q ss_pred             cCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE
Q 005342          379 SGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV  457 (701)
Q Consensus       379 ~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~  457 (701)
                                 .+|.. +++++++|||+++|+|+.||.|++||..    .+-|..   ++..|+..|+.+.|+..|+.++
T Consensus       347 -----------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~----SgfC~v---TFteHts~Vt~v~f~~~g~~ll  408 (893)
T KOG0291|consen  347 -----------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ----SGFCFV---TFTEHTSGVTAVQFTARGNVLL  408 (893)
T ss_pred             -----------cccccceeeEEECCCCcEEEeccCCCcEEEEecc----CceEEE---EeccCCCceEEEEEEecCCEEE
Confidence                       37777 9999999999999999999999999998    777777   6678999999999999999999


Q ss_pred             EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C-CeEEEEeCC
Q 005342          458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-GKISIFSLE  533 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d-g~I~iwd~~  533 (701)
                      +.+-||+|+.||+.                     ....... +.........|++.+  |..+.+|+ | =.|.+|+++
T Consensus       409 ssSLDGtVRAwDlk---------------------RYrNfRT-ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q  466 (893)
T KOG0291|consen  409 SSSLDGTVRAWDLK---------------------RYRNFRT-FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ  466 (893)
T ss_pred             EeecCCeEEeeeec---------------------ccceeee-ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence            99999999999773                     2222211 222334456678887  77777777 6 589999999


Q ss_pred             CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342          534 TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC  611 (701)
Q Consensus       534 ~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~  611 (701)
                      ||+.+-.+.||.++|.+++|+|+| .+++||.|.+|++||+-.. ..+.++. +...+..++|+|||+-||+++-||.|.
T Consensus       467 TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqIt  545 (893)
T KOG0291|consen  467 TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQIT  545 (893)
T ss_pred             cCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEE
Confidence            999999999999999999999999 9999999999999998654 3455555 677899999999999999999999999


Q ss_pred             EEECCCCeeeee----e-------eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342          612 VWDAVGWKKLCS----K-------FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       612 vwd~~~g~~~~~----~-------~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      +||.+.+.....    +       ....+...+.......+.+++|+||..+++| ..+.|+|||+.++-+++.+.
T Consensus       546 f~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfq  621 (893)
T KOG0291|consen  546 FFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQ  621 (893)
T ss_pred             EEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEE
Confidence            999987543210    0       0011111111223678999999999999985 88999999999998877664

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-32  Score=262.61  Aligned_cols=260  Identities=18%  Similarity=0.282  Sum_probs=230.6

Q ss_pred             CccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342          386 SSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT  464 (701)
Q Consensus       386 ~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  464 (701)
                      .+++.+|.. |+.+-|+|+-...++++.|++|++||..    ++++..   ...+|.+.|.+++|+..|+++++++.|-.
T Consensus       101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~----tg~~e~---~LrGHt~sv~di~~~a~Gk~l~tcSsDl~  173 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTE----TGELER---SLRGHTDSVFDISFDASGKYLATCSSDLS  173 (406)
T ss_pred             hhhhhccccceeeeeeccCceEEEEecCCceEEEEEcc----chhhhh---hhhccccceeEEEEecCccEEEecCCccc
Confidence            445778988 9999999999999999999999999998    777755   56789999999999999999999999988


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~  541 (701)
                      +.+||.++.                    .+++.. + .+|...|.++.|-  |.++++++ |.+|+.|++.+|-++.++
T Consensus       174 ~~LWd~~~~--------------------~~c~ks-~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~  231 (406)
T KOG0295|consen  174 AKLWDFDTF--------------------FRCIKS-L-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF  231 (406)
T ss_pred             hhheeHHHH--------------------HHHHHH-h-cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec
Confidence            999976221                    112221 1 3788899999998  99999999 999999999999999999


Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecC---------------CCEEEEEe
Q 005342          542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---------------LNVLVSSG  605 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spd---------------g~~l~s~s  605 (701)
                      .+|...+..++.+.|| .+|+++.|.++++|-..++++...+++|.-+|.+++|-|.               ++++.++|
T Consensus       232 ~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S  311 (406)
T KOG0295|consen  232 PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS  311 (406)
T ss_pred             cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence            9999999999999999 9999999999999999999999999999999999999663               25999999


Q ss_pred             CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEE
Q 005342          606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHI  680 (701)
Q Consensus       606 ~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~  680 (701)
                      .|++|++||+.+|.  +...+.    ||.   +.|..++|+|.|+||++. +|+++++||++++++.++++.    ++++
T Consensus       312 rDktIk~wdv~tg~--cL~tL~----ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l  382 (406)
T KOG0295|consen  312 RDKTIKIWDVSTGM--CLFTLV----GHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL  382 (406)
T ss_pred             ccceEEEEeccCCe--EEEEEe----ccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence            99999999999985  444555    776   999999999999999996 899999999999999999988    8888


Q ss_pred             EEE
Q 005342          681 MFV  683 (701)
Q Consensus       681 ~fs  683 (701)
                      .|.
T Consensus       383 Dfh  385 (406)
T KOG0295|consen  383 DFH  385 (406)
T ss_pred             ecC
Confidence            885

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.1e-31  Score=242.58  Aligned_cols=255  Identities=16%  Similarity=0.185  Sum_probs=217.0

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG  380 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  380 (701)
                      .+|++|...+|.|..+++...+.|+  .+...||      .....||+||+.++...-.                     
T Consensus        20 hTIRfWqa~tG~C~rTiqh~dsqVN--rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv---------------------   76 (311)
T KOG0315|consen   20 HTIRFWQALTGICSRTIQHPDSQVN--RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPV---------------------   76 (311)
T ss_pred             ceeeeeehhcCeEEEEEecCcccee--eEEEcCCcchhhhccCCeeEEEEccCCCCCce---------------------
Confidence            8999999999999999998888899  9999999      7778999999988764222                     


Q ss_pred             CCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE
Q 005342          381 DDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL  459 (701)
Q Consensus       381 D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~  459 (701)
                            ..+.+|.+ |.++.|.-||+.+++|+.||+++|||+.    .-.|.+.   + .+..+|.++..+|+...|++|
T Consensus        77 ------~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR----~~~~qR~---~-~~~spVn~vvlhpnQteLis~  142 (311)
T KOG0315|consen   77 ------ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR----SLSCQRN---Y-QHNSPVNTVVLHPNQTELISG  142 (311)
T ss_pred             ------eEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc----Ccccchh---c-cCCCCcceEEecCCcceEEee
Confidence                  12457766 9999999999999999999999999998    3333331   1 267899999999999999999


Q ss_pred             ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc
Q 005342          460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ  536 (701)
Q Consensus       460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~  536 (701)
                      ..+|.|++||+..                     ..+... +.+.....|.++++.  |++++.+. .|..++|++-+..
T Consensus       143 dqsg~irvWDl~~---------------------~~c~~~-liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~  200 (311)
T KOG0315|consen  143 DQSGNIRVWDLGE---------------------NSCTHE-LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ  200 (311)
T ss_pred             cCCCcEEEEEccC---------------------Cccccc-cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence            9999999997743                     222221 223456789999888  88998888 6999999986543


Q ss_pred             ------EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 005342          537 ------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADA  608 (701)
Q Consensus       537 ------~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~  608 (701)
                            ++.+++.|...+..+.+|||+ +||+++.|.+++||+.++. +....+.||...++.++||.||.||++|+.|+
T Consensus       201 ~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  201 TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             ccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence                  567788899999999999999 9999999999999999887 66778899999999999999999999999999


Q ss_pred             eEEEEECCCCee
Q 005342          609 QLCVWDAVGWKK  620 (701)
Q Consensus       609 ~I~vwd~~~g~~  620 (701)
                      ++++|++..++.
T Consensus       281 ~~rlW~~~~~k~  292 (311)
T KOG0315|consen  281 TARLWDLSAGKE  292 (311)
T ss_pred             ceeecccccCce
Confidence            999999999863

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=6.3e-33  Score=270.98  Aligned_cols=273  Identities=12%  Similarity=0.133  Sum_probs=232.2

Q ss_pred             eecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-e
Q 005342          324 KQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-S  395 (701)
Q Consensus       324 ~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V  395 (701)
                      ......|.  .+.|.|+       +.-|.+.+|+..+-.                             -..|+..|+. |
T Consensus        93 NKvkc~V~--~v~WtPeGRRLltgs~SGEFtLWNg~~fn-----------------------------FEtilQaHDs~V  141 (464)
T KOG0284|consen   93 NKVKCPVN--VVRWTPEGRRLLTGSQSGEFTLWNGTSFN-----------------------------FETILQAHDSPV  141 (464)
T ss_pred             ccccccee--eEEEcCCCceeEeecccccEEEecCceee-----------------------------HHHHhhhhcccc
Confidence            33444677  8999999       788999999873221                             1235779999 9


Q ss_pred             EEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342          396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  475 (701)
                      +++.|+++|.++++|+.+|.|++|+.+    ......+   ...|...|.+++|||+...+++++.||+|+|||....  
T Consensus       142 r~m~ws~~g~wmiSgD~gG~iKyWqpn----mnnVk~~---~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~--  212 (464)
T KOG0284|consen  142 RTMKWSHNGTWMISGDKGGMIKYWQPN----MNNVKII---QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP--  212 (464)
T ss_pred             eeEEEccCCCEEEEcCCCceEEecccc----hhhhHHh---hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC--
Confidence            999999999999999999999999987    3333321   1235589999999999999999999999999986221  


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI  552 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~  552 (701)
                                       ..+.+   + .+|.-.|.+++|+  ...+++++ |..|++||.+++.++.++.+|+..|..+.
T Consensus       213 -----------------kee~v---L-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~  271 (464)
T KOG0284|consen  213 -----------------KEERV---L-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK  271 (464)
T ss_pred             -----------------chhhe---e-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence                             11111   2 5899999999999  77899999 99999999999999999999999999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc
Q 005342          553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  630 (701)
Q Consensus       553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~  630 (701)
                      |+|++ +|++++.|..++++|+++.+.+.++++|+..|++++|+| ...+|++|+.||.|..|.+...     .++..+.
T Consensus       272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-----~p~~~i~  346 (464)
T KOG0284|consen  272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-----EPLGEIP  346 (464)
T ss_pred             EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc-----ccccCCC
Confidence            99999 999999999999999999999999999999999999999 6679999999999999999852     4454466


Q ss_pred             CCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          631 TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       631 ~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      ..|.   ..|++++|+|-|..|++| .|.++++|.-
T Consensus       347 ~AHd---~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  347 PAHD---GEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             cccc---cceeeeeccccceeEeecCCCcceeeecc
Confidence            6776   999999999999999997 7999999975

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2e-30  Score=241.18  Aligned_cols=285  Identities=15%  Similarity=0.188  Sum_probs=224.5

Q ss_pred             ceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF  389 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l  389 (701)
                      ..++.+++|.+.++  .++|+|.        +.|+.|++|++..+.....           ..+              .-
T Consensus         5 ~~~~~~~gh~~r~W--~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~c-----------k~v--------------ld   57 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVW--SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTC-----------KTV--------------LD   57 (312)
T ss_pred             eeEEeecCCCCcEE--EEEeccCCceEEEeecCCceEEEEecCCCCcEEE-----------EEe--------------cc
Confidence            45678899999999  9999998        8999999999985433221           000              01


Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      .+|+. |++++|+|.|++||+|+.|.++.||.-.    .+....+. ...+|.+.|.|++|+++|.+|++|+.|++|-||
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~----~~efecv~-~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW  132 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE----DGEFECVA-TLEGHENEVKCVAWSASGNYLATCSRDKSVWIW  132 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecC----CCceeEEe-eeeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence            27888 9999999999999999999999999876    33333322 567899999999999999999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC---CCcEEEE
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQTLAT  540 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~---~~~~~~~  540 (701)
                      ....                    .++  +..  ...+|...|..+.|+  ...|++++ |++|++|.-.   .-.++++
T Consensus       133 e~de--------------------ddEfec~a--VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t  190 (312)
T KOG0645|consen  133 EIDE--------------------DDEFECIA--VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT  190 (312)
T ss_pred             EecC--------------------CCcEEEEe--eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE
Confidence            7732                    222  332  225899999999999  68999999 9999999876   2358999


Q ss_pred             ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      +.+|...|.+++|+|.| .++++++|++++||-..+.     +.+ |+..+..++|.  ...|+|++.|+.|+++.-..+
T Consensus       191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~  263 (312)
T KOG0645|consen  191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS  263 (312)
T ss_pred             ecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCC
Confidence            99999999999999999 9999999999999986532     222 78899999998  457999999999999987753


Q ss_pred             eeeee-eeeeeccCCCCCCCCCeEEEEEcCC-CCEEEEE-ecCeEEEEECC
Q 005342          619 KKLCS-KFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       619 ~~~~~-~~l~~~~~~~~~~~~~v~~v~~spd-g~~l~sg-~Dg~I~iwd~~  666 (701)
                      -.... ..+......|.   ..|++++|+|. ...|++| +||.|++|.+.
T Consensus       264 ~d~p~~~l~~~~~~aHe---~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  264 PDEPSWNLLAKKEGAHE---VDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCchHHHHHhhhcccc---cccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            11010 11111223443   89999999995 5667774 89999999874

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.2e-30  Score=258.64  Aligned_cols=324  Identities=15%  Similarity=0.164  Sum_probs=246.7

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      +.|.|++.++-+--.+++.|...|.  |++||||       +.|+.+.+||-.+|+.+..          +.+.      
T Consensus       170 n~v~ffeGPPFKFk~s~r~HskFV~--~VRysPDG~~Fat~gsDgki~iyDGktge~vg~----------l~~~------  231 (603)
T KOG0318|consen  170 NTVAFFEGPPFKFKSSFREHSKFVN--CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE----------LEDS------  231 (603)
T ss_pred             CeEEEeeCCCeeeeeccccccccee--eEEECCCCCeEEEecCCccEEEEcCCCccEEEE----------ecCC------
Confidence            7888888888888899999999999  9999999       9999999999999999888          4332      


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCC------CCc--------e------eEee----
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINE------PSE--------C------RTLL----  434 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~------~~~--------~------~~l~----  434 (701)
                                .+|.+ |.+++|+||++.++|++.|.+++|||+.+..-      ..+        +      ..++    
T Consensus       232 ----------~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~  301 (603)
T KOG0318|consen  232 ----------DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT  301 (603)
T ss_pred             ----------CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence                      37888 99999999999999999999999999974310      000        0      0000    


Q ss_pred             ------------cCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc----cccccc--c-----------e-
Q 005342          435 ------------LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS----LEEENV--N-----------M-  484 (701)
Q Consensus       435 ------------~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~----~g~~~~--~-----------~-  484 (701)
                                  ....+|...|+++..+||+++|++|+.||.|.-|+..++...    .++...  .           + 
T Consensus       302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g  381 (603)
T KOG0318|consen  302 INYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG  381 (603)
T ss_pred             EEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence                        011289999999999999999999999999999998776541    111100  0           0 


Q ss_pred             ---eeEEeeC-----------------------CCC-e---------EEeecc----cCCCCCCeEEEEec--CCEEEEE
Q 005342          485 ---ESQLYQP-----------------------SSK-L---------VMTNDI----AADPKDSISCFALR--GSHLFSA  522 (701)
Q Consensus       485 ---~i~~~d~-----------------------~~~-~---------~~~~~~----~~~~~~~v~~l~~s--~~~l~s~  522 (701)
                         .+++.+.                       ..+ .         .+-+..    .........+++++  ++.+++|
T Consensus       382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG  461 (603)
T KOG0318|consen  382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG  461 (603)
T ss_pred             cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence               0111111                       000 0         000000    00123455678888  8899999


Q ss_pred             e-CCeEEEEeCCCCcE--EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-eecCCCCCeEEEEEecC
Q 005342          523 S-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLS  597 (701)
Q Consensus       523 s-dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~v~~spd  597 (701)
                      + |+.+++|.+..+..  ......|..+|+++++|||+ +||+|...+.+.+||+.+++... .+.-|+..|++++|+|+
T Consensus       462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~  541 (603)
T KOG0318|consen  462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN  541 (603)
T ss_pred             cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC
Confidence            9 99999999976542  33445689999999999999 99999999999999999887643 33349999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342          598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP  666 (701)
Q Consensus       598 g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~  666 (701)
                      ..++||||-|..|.||+++...    +.+. +...|.   ..|+.+.|-.+...+-+|.|..|++|++.
T Consensus       542 n~~vATGSlDt~Viiysv~kP~----~~i~-iknAH~---~gVn~v~wlde~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  542 NKLVATGSLDTNVIIYSVKKPA----KHII-IKNAHL---GGVNSVAWLDESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             ceEEEeccccceEEEEEccChh----hheE-eccccc---cCceeEEEecCceEEeccCcceeEEeccc
Confidence            9999999999999999999842    2244 556676   66999999877666666899999999873

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.8e-31  Score=248.09  Aligned_cols=278  Identities=15%  Similarity=0.174  Sum_probs=228.3

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .+.+|++ |..+.|+|+|..||||+.|..|.+|++.     +.|.... ...+|.+.|..+.|.+|++.+++++.|.+++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~-----gdceN~~-~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVY-----GDCENFW-VLKGHSGAVMELHGMRDGSHILSCGTDKTVR  115 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecc-----cccccee-eeccccceeEeeeeccCCCEEEEecCCceEE
Confidence            3679999 9999999999999999999999999985     3333322 2347999999999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      .||.                     ++|+...+ + ++|..-|.++..+  |. ++.+++ |+++++||+++...++++.
T Consensus       116 ~wD~---------------------~tG~~~rk-~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~  172 (338)
T KOG0265|consen  116 GWDA---------------------ETGKRIRK-H-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE  172 (338)
T ss_pred             EEec---------------------ccceeeeh-h-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc
Confidence            9954                     66776653 2 5788889888877  55 455666 8999999999998888886


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                       .+.+++++.|..++ .+.+|+-|+.|++||++.+....+++||..+|+.+..+|+|.++.+-+.|+++++||++....-
T Consensus       173 -~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~  251 (338)
T KOG0265|consen  173 -NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS  251 (338)
T ss_pred             -cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence             56789999999999 9999999999999999999999999999999999999999999999999999999999875322


Q ss_pred             eeeeeeeccCCCC-CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEee---EEeeeec
Q 005342          622 CSKFLHSFQTGLV-PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQI---VVKFHSF  692 (701)
Q Consensus       622 ~~~~l~~~~~~~~-~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~---~~~f~~~  692 (701)
                      . ..+. +..||. .-+.....++|+|+++.+.+| .|..+++||..+...+..++|    |+.+.|.|.   ..+--+=
T Consensus       252 ~-R~v~-if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd  329 (338)
T KOG0265|consen  252 Q-RCVK-IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD  329 (338)
T ss_pred             C-ceEE-EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC
Confidence            1 2233 322432 111334678999999999986 899999999988899999999    999999765   3333444


Q ss_pred             ceEEE
Q 005342          693 KFFYV  697 (701)
Q Consensus       693 ~~~~~  697 (701)
                      |.+|.
T Consensus       330 k~i~l  334 (338)
T KOG0265|consen  330 KTIYL  334 (338)
T ss_pred             ceeEe
Confidence            45554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=260.66  Aligned_cols=413  Identities=17%  Similarity=0.211  Sum_probs=282.9

Q ss_pred             chhhhhhHhhhccchhhhhhhhhhccCccccc----ccccccccccccccccccccccccccccccccchhhccccccee
Q 005342          196 EELIYLIHQFLNEEEFKETLHKLEQETRVFFD----INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKY  271 (701)
Q Consensus       196 ~~~~~l~~q~l~~~~~~~~~~~l~~es~~~~~----~~~~~~~i~~g~~~~~e~~l~~~~~~~~~~~s~~~~~~~~~q~~  271 (701)
                      .+++||+.|+|++...+.+...|++|++++.+    +.-|.+.|-.|.|+...+.+..++..+..      +..+.+|..
T Consensus         8 sdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~kk------L~dLYEqiv   81 (508)
T KOG0275|consen    8 SDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPDKK------LIDLYEQIV   81 (508)
T ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCchhH------HHHHHHHHH
Confidence            47899999999999999999999999999944    77888999999999988777655432221      112233333


Q ss_pred             eeeeccc------------------------------ccccccccc-cccccccch--hhhhhcccccCcccccccCccc
Q 005342          272 LEAVDRQ------------------------------QKLPSDFAE-RAHLFDDFK--VLVERNPMLQDKLKFPSMDKSR  318 (701)
Q Consensus       272 ~~~~~~~------------------------------~~~~~~~~d-r~~~~~~~~--~l~~~~~~la~~i~iwd~~~~~  318 (701)
                      +|+.+-+                              ..+-.++-| +-...+..+  .-....+.|++.|.+  +++.+
T Consensus        82 lEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~dssKEkrRa~IAQ~ls~EV~V--VppSR  159 (508)
T KOG0275|consen   82 LELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDSSKEKRRAVIAQALSGEVHV--VPPSR  159 (508)
T ss_pred             HHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcchHHHHHHHHHHHhcCceEE--cChHH
Confidence            3332111                              000011111 111122111  011111222222222  12222


Q ss_pred             eeEEE------eecCcceeeeEEEEccCCCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342          319 LLSLI------KQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN  392 (701)
Q Consensus       319 ~~~~l------~~h~~~v~~~~l~fspds~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h  392 (701)
                      ++..+      ++|.+...           .|+-.  |+-.|+.-..-       ..-+.++...       ....-.+.
T Consensus       160 LlaLlGQaLKWQqHQGLLP-----------PGt~i--DLFRGkAA~K~-------~~Ee~~Pt~l-------~r~IKFg~  212 (508)
T KOG0275|consen  160 LLALLGQALKWQQHQGLLP-----------PGTTI--DLFRGKAAMKD-------QEEERYPTQL-------ARSIKFGQ  212 (508)
T ss_pred             HHHHHHHHhhhHhhcCCCC-----------CCcee--eeccchhhhhh-------hHhhhchHHh-------hhheeccc
Confidence            22211      22333222           22222  33222221110       0000000000       01111244


Q ss_pred             Cc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-ee----cCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          393 NQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LL----LPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       393 ~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~----~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .. +.|..|||||++|++|+.||.|.+|+..    +|+.++ +.    -.+-.+...|.|+.||.|...+++|+.||.|+
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~----~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYT----TGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK  288 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhc----cchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence            45 8899999999999999999999999997    555432 00    01113678999999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN  543 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~  543 (701)
                      +|.+                     .+|.++.+ +...|...|+|+.||  +..+++++ |.++++--+++|++++.+.|
T Consensus       289 vWri---------------------~tG~ClRr-FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG  346 (508)
T KOG0275|consen  289 VWRI---------------------ETGQCLRR-FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG  346 (508)
T ss_pred             EEEE---------------------ecchHHHH-hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC
Confidence            9955                     66776644 556899999999999  88899999 99999999999999999999


Q ss_pred             CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC--CCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCe
Q 005342          544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      |.+.|+...|++|| .+++++.||+|++|+.++.+++.+|+.  ..-+|+++..-| +...++.|...++|+|-++... 
T Consensus       347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-  425 (508)
T KOG0275|consen  347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-  425 (508)
T ss_pred             ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-
Confidence            99999999999999 999999999999999999999998875  445889988888 4558888999999999999872 


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeeeee
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                           .++++..|.. ..+...+...||.|.++++ |.|+.++-+.+.+|++.++++.
T Consensus       426 -----vVrsfsSGkR-EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V  477 (508)
T KOG0275|consen  426 -----VVRSFSSGKR-EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV  477 (508)
T ss_pred             -----EEeeeccCCc-cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec
Confidence                 3333444443 1256677889999999998 7999999999999999988876

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=6.1e-31  Score=252.75  Aligned_cols=287  Identities=17%  Similarity=0.191  Sum_probs=243.3

Q ss_pred             ccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc
Q 005342          316 KSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC  388 (701)
Q Consensus       316 ~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~  388 (701)
                      +.++-+.+++|.++|.  |+++-|.       +.|++++|||+.+|+...+          +                  
T Consensus       140 pwKl~rVi~gHlgWVr--~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt----------l------------------  189 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVR--SVAVDPGNEWFATGSADRTIKIWDLATGQLKLT----------L------------------  189 (460)
T ss_pred             cceehhhhhhccceEE--EEeeCCCceeEEecCCCceeEEEEcccCeEEEe----------e------------------
Confidence            4567788999999999  9999997       9999999999999988776          2                  


Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                       .||.. |..+++|+...|+++++.|+.|+.||++    ..+..+   ...+|-..|.|++..|.-+.|++|+.|.+++|
T Consensus       190 -tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe----~nkvIR---~YhGHlS~V~~L~lhPTldvl~t~grDst~Rv  261 (460)
T KOG0285|consen  190 -TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE----YNKVIR---HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRV  261 (460)
T ss_pred             -cchhheeeeeeecccCceEEEecCCCeeEEEech----hhhhHH---HhccccceeEEEeccccceeEEecCCcceEEE
Confidence             36667 8999999999999999999999999998    444433   45579999999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      ||+++                     ...+.. + .+|..+|.++.+.  +..+++|+ |++|++||+..|+...++..|
T Consensus       262 WDiRt---------------------r~~V~~-l-~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h  318 (460)
T KOG0285|consen  262 WDIRT---------------------RASVHV-L-SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH  318 (460)
T ss_pred             eeecc---------------------cceEEE-e-cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence            97743                     332221 2 5899999999998  88899999 999999999999999999999


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                      ...+.+++.+|.. .+|+++.| .|+-|++..|..++.+.+|+.-|++++.+.|| ++++|++.|.+..||.++|.....
T Consensus       319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~  396 (460)
T KOG0285|consen  319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQR  396 (460)
T ss_pred             cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccc
Confidence            9999999999999 88888877 69999999999999999999999999998876 678899999999999999854321


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                      ..-. +..|....+..|.+.+|...|..|+++ .|.+|++|.-.
T Consensus       397 ~~t~-vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  397 GQTI-VQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             cccc-ccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence            1101 222322234678999999999999997 89999999753

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=6.4e-32  Score=258.28  Aligned_cols=273  Identities=16%  Similarity=0.203  Sum_probs=223.1

Q ss_pred             cCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEE
Q 005342          326 IMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SREST  399 (701)
Q Consensus       326 h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~  399 (701)
                      ....|.  |+.|-.+     ..|+||+|||..+-.|++.                             |.||++ |-|+.
T Consensus       196 ~skgVY--ClQYDD~kiVSGlrDnTikiWD~n~~~c~~~-----------------------------L~GHtGSVLCLq  244 (499)
T KOG0281|consen  196 NSKGVY--CLQYDDEKIVSGLRDNTIKIWDKNSLECLKI-----------------------------LTGHTGSVLCLQ  244 (499)
T ss_pred             cCCceE--EEEecchhhhcccccCceEEeccccHHHHHh-----------------------------hhcCCCcEEeee
Confidence            355688  9999877     7999999999998888877                             247777 88888


Q ss_pred             EcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccc
Q 005342          400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE  479 (701)
Q Consensus       400 ~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~  479 (701)
                      |.  .+.+++|+.|.+|++||++    ++++..   ..-+|...|..+.|+  ..++++++.|.++.+||+..       
T Consensus       245 yd--~rviisGSSDsTvrvWDv~----tge~l~---tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s-------  306 (499)
T KOG0281|consen  245 YD--ERVIVSGSSDSTVRVWDVN----TGEPLN---TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS-------  306 (499)
T ss_pred             cc--ceEEEecCCCceEEEEecc----CCchhh---HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC-------
Confidence            85  4599999999999999999    777666   334689999999998  44899999999999998832       


Q ss_pred             cccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-
Q 005342          480 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-  557 (701)
Q Consensus       480 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-  557 (701)
                                  .+.......+ .+|...|..+.|+.+++++++ |.+|++|++.+++.++++.+|...|-|+.+.  | 
T Consensus       307 ------------ps~it~rrVL-vGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~r  371 (499)
T KOG0281|consen  307 ------------PTDITLRRVL-VGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DR  371 (499)
T ss_pred             ------------chHHHHHHHH-hhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--Ce
Confidence                        2222111112 489999999999988999999 9999999999999999999999999888764  5 


Q ss_pred             eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee----eeeeeeccCCC
Q 005342          558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC----SKFLHSFQTGL  633 (701)
Q Consensus       558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~----~~~l~~~~~~~  633 (701)
                      ++++|+.|.+|++||+..|.+++.++||+.-|.++.|  |.+.+++|+.||+|+|||+..+..-.    ..++.++ ..|
T Consensus       372 lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~l-v~h  448 (499)
T KOG0281|consen  372 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTL-VEH  448 (499)
T ss_pred             EEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhh-hhc
Confidence            9999999999999999999999999999999999999  56789999999999999999864210    0122211 234


Q ss_pred             CCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCce
Q 005342          634 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH  670 (701)
Q Consensus       634 ~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~  670 (701)
                      +   +.|..+.|.  ...+++ ++|.+|-|||..++-.
T Consensus       449 s---gRVFrLQFD--~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  449 S---GRVFRLQFD--EFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             c---ceeEEEeec--ceEEEeccCCCeEEEEEcCCCCc
Confidence            4   789999985  345555 5899999999987754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.7e-30  Score=269.77  Aligned_cols=303  Identities=17%  Similarity=0.208  Sum_probs=250.0

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS  378 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  378 (701)
                      ..+.++|.++.+....+-|..+.|.  .++|-..        ++-+.+|++++.+..|.-                    
T Consensus       303 Qnl~l~d~~~l~i~k~ivG~ndEI~--Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~i--------------------  360 (775)
T KOG0319|consen  303 QNLFLYDEDELTIVKQIVGYNDEIL--DMKFLGPEESHLAVATNSPELRLYTLPTSYCQI--------------------  360 (775)
T ss_pred             ceEEEEEccccEEehhhcCCchhhe--eeeecCCccceEEEEeCCCceEEEecCCCceEE--------------------
Confidence            8888999999999999999999999  8888653        778889999877666552                    


Q ss_pred             cCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEE
Q 005342          379 SGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFL  456 (701)
Q Consensus       379 ~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l  456 (701)
                                +.||+. |.++....+|-+|+||+.|+++++|.+++.-....+..   ...+|.+.|.+++++..+ .+|
T Consensus       361 ----------i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a---~~~gH~~svgava~~~~~asff  427 (775)
T KOG0319|consen  361 ----------IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA---QANGHTNSVGAVAGSKLGASFF  427 (775)
T ss_pred             ----------EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh---hhcccccccceeeecccCccEE
Confidence                      358888 99999777889999999999999999952211111122   335799999999998766 488


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE  533 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~  533 (701)
                      +++|.|+++++|++...+.     .+         ....+........|...|+|++++  +..+++|+ |.+.++|+++
T Consensus       428 vsvS~D~tlK~W~l~~s~~-----~~---------~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le  493 (775)
T KOG0319|consen  428 VSVSQDCTLKLWDLPKSKE-----TA---------FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE  493 (775)
T ss_pred             EEecCCceEEEecCCCccc-----cc---------ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence            9999999999998844211     00         000010011123699999999999  78899999 9999999999


Q ss_pred             CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342          534 TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV  612 (701)
Q Consensus       534 ~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v  612 (701)
                      ......++.||...+.++.|+|.. .+|++|.|++|+||.+.++.++++|.||+..|..+.|-.+|..|+|++.||-|++
T Consensus       494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl  573 (775)
T KOG0319|consen  494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL  573 (775)
T ss_pred             CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       613 wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      |++++++  |...+.    .|.   ..|++++-+|.+.++++| .||.|.+|.=.|
T Consensus       574 Wnikt~e--C~~tlD----~H~---DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  574 WNIKTNE--CEMTLD----AHN---DRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             Eeccchh--hhhhhh----hcc---ceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            9999965  333433    555   999999999999999996 899999996433

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.1e-29  Score=233.22  Aligned_cols=255  Identities=15%  Similarity=0.202  Sum_probs=209.9

Q ss_pred             ccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          389 FNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       389 l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      +.+|.+ ++.++|+|- |..||+|+.|+.|++|+... ..+-.|+.  ....+|...|.+++|+|.|++|+++|.|.++.
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~--vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKT--VLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEEE--eccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            568899 999999999 99999999999999999973 11222332  22347999999999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC---cEE
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTL  538 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~---~~~  538 (701)
                      ||.-                     ..+.  ++.. + .+|...|.|++|+  |++||+++ |+.|.+|.+..+   .+.
T Consensus        87 Iw~k---------------------~~~efecv~~-l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~  143 (312)
T KOG0645|consen   87 IWKK---------------------EDGEFECVAT-L-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI  143 (312)
T ss_pred             Eeec---------------------CCCceeEEee-e-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence            9943                     2222  3332 3 6999999999999  99999999 999999998743   477


Q ss_pred             EEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC---CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342          539 ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD  614 (701)
Q Consensus       539 ~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~---~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd  614 (701)
                      ..+++|.+.|-.+.|+|.. +|++++.|.+|++|+-.   .-.+++++.+|.+.|.+++|+|.|..|+++++|++++||.
T Consensus       144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence            8899999999999999988 99999999999999865   2467899999999999999999999999999999999998


Q ss_pred             CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCC------ceeeeeee-----eeEEEE
Q 005342          615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL------NHTSQVLL-----ISHIMF  682 (701)
Q Consensus       615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g------~~~~~l~~-----i~~~~f  682 (701)
                      ..++          +..-|.   ..++.+.|.  .-.|++ |.|+.|+++.-..+      +++....+     |+++.|
T Consensus       224 ~~~~----------~~~~~s---r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w  288 (312)
T KOG0645|consen  224 LYTD----------LSGMHS---RALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW  288 (312)
T ss_pred             eccC----------cchhcc---cceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence            7653          333444   789999998  456777 48999999987643      11111112     999999


Q ss_pred             Ee
Q 005342          683 VQ  684 (701)
Q Consensus       683 s~  684 (701)
                      .|
T Consensus       289 ~p  290 (312)
T KOG0645|consen  289 NP  290 (312)
T ss_pred             cC
Confidence            98

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=2.3e-29  Score=250.25  Aligned_cols=266  Identities=10%  Similarity=0.083  Sum_probs=224.7

Q ss_pred             cceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEE
Q 005342          328 DWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SREST  399 (701)
Q Consensus       328 ~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~  399 (701)
                      ..|+  +++|+.+       +.||.+++|+...+. +.+                             |..|.+ |.++.
T Consensus       236 kdVT--~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~t-----------------------------l~~HkgPI~slK  283 (524)
T KOG0273|consen  236 KDVT--SLDWNNDGTLLATGSEDGEARIWNKDGNL-IST-----------------------------LGQHKGPIFSLK  283 (524)
T ss_pred             CCcc--eEEecCCCCeEEEeecCcEEEEEecCchh-hhh-----------------------------hhccCCceEEEE
Confidence            4578  9999987       899999999975432 222                             357888 99999


Q ss_pred             EcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccc
Q 005342          400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE  479 (701)
Q Consensus       400 ~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~  479 (701)
                      |+.+|+||++++.|+++.+||..    ++.+.+   .+..|..+...+.|-.+.. +++++.||.|+|+.+...      
T Consensus       284 Wnk~G~yilS~~vD~ttilwd~~----~g~~~q---~f~~~s~~~lDVdW~~~~~-F~ts~td~~i~V~kv~~~------  349 (524)
T KOG0273|consen  284 WNKKGTYILSGGVDGTTILWDAH----TGTVKQ---QFEFHSAPALDVDWQSNDE-FATSSTDGCIHVCKVGED------  349 (524)
T ss_pred             EcCCCCEEEeccCCccEEEEecc----CceEEE---eeeeccCCccceEEecCce-EeecCCCceEEEEEecCC------
Confidence            99999999999999999999997    666555   2233666667888876665 799999999999976321      


Q ss_pred             cccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCC
Q 005342          480 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ  556 (701)
Q Consensus       480 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spd  556 (701)
                                     ..+.+ + .+|.++|.++.|+  |..|++++ |+++++|+.......+.+.+|...|..+.|+|+
T Consensus       350 ---------------~P~~t-~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~  412 (524)
T KOG0273|consen  350 ---------------RPVKT-F-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT  412 (524)
T ss_pred             ---------------Cccee-e-ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC
Confidence                           11111 2 3699999999999  99999999 899999999988899999999999999999986


Q ss_pred             C----------eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 005342          557 D----------LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL  626 (701)
Q Consensus       557 g----------~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l  626 (701)
                      |          .+++++.|++|++||+..+.++++|..|..+|.+++|+|+|+++|+|+.||.|.+|+.++++...  ..
T Consensus       413 g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~--s~  490 (524)
T KOG0273|consen  413 GPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK--SY  490 (524)
T ss_pred             CCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE--ee
Confidence            4          68999999999999999999999999999999999999999999999999999999999986432  22


Q ss_pred             eeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          627 HSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       627 ~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                      .    +.    +.|..++|+.+|..|.++ .|+.+++-|++
T Consensus       491 ~----~~----~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  491 Q----GT----GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             c----CC----CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            2    32    779999999999999886 89999999874

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-29  Score=229.96  Aligned_cols=279  Identities=13%  Similarity=0.121  Sum_probs=231.0

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      +.++.+.+|.+.|.  .+.|+-|       +.|++|++||...|.++++          .                   .
T Consensus         8 kr~~~l~~~qgaV~--avryN~dGnY~ltcGsdrtvrLWNp~rg~likt----------Y-------------------s   56 (307)
T KOG0316|consen    8 KRLSILDCAQGAVR--AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT----------Y-------------------S   56 (307)
T ss_pred             hhceeecccccceE--EEEEccCCCEEEEcCCCceEEeecccccceeee----------e-------------------c
Confidence            34567889999999  9999998       9999999999999999888          2                   3


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      +|.. |..++.+.|...+++|+.|..+.+||++    +|+..+   .+.+|...|..+.|+.+...+++|+.|.++++||
T Consensus        57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~----TGkv~R---r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wD  129 (307)
T KOG0316|consen   57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN----TGKVDR---RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWD  129 (307)
T ss_pred             CCCceeeeccccccccccccCCCCceEEEEEcc----cCeeee---ecccccceeeEEEecCcceEEEeccccceeEEEE
Confidence            6677 8899999999999999999999999999    787665   5678999999999999999999999999999998


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA  548 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i  548 (701)
                      .++.                   +-+.++  +.......|.++.+.+..|++|+ ||+++.||++.|....-+-  ..+|
T Consensus       130 CRS~-------------------s~ePiQ--ildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pi  186 (307)
T KOG0316|consen  130 CRSR-------------------SFEPIQ--ILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPI  186 (307)
T ss_pred             cccC-------------------CCCccc--hhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhc--CCcc
Confidence            7543                   222222  11345678889988888899999 9999999999998877665  4589


Q ss_pred             EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCe--EEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342          549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI--TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF  625 (701)
Q Consensus       549 ~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V--~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~  625 (701)
                      ++++|++|| ..++++.|+++++.|-.+|++++.++||...-  ..++++.....+++||+||.|++||+..+..+.   
T Consensus       187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s---  263 (307)
T KOG0316|consen  187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS---  263 (307)
T ss_pred             eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee---
Confidence            999999999 99999999999999999999999999998743  344677777799999999999999999865332   


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  665 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~  665 (701)
                        .+..+..   -.|.+++++|.-.-+++..++.+..|--
T Consensus       264 --k~~~~~~---v~v~dl~~hp~~~~f~~A~~~~~~~~~~  298 (307)
T KOG0316|consen  264 --KLSVVST---VIVTDLSCHPTMDDFITATGHGDLFWYQ  298 (307)
T ss_pred             --eeccCCc---eeEEeeecccCccceeEecCCceeceee
Confidence              1222221   3489999999987777776666677753

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.1e-28  Score=251.94  Aligned_cols=274  Identities=22%  Similarity=0.321  Sum_probs=228.8

Q ss_pred             EEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       321 ~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      ..+++|.+.|.  +++|+|+       +.|+.+++|++.++.....                             +.+|.
T Consensus         3 ~~~~~h~~~i~--~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~-----------------------------~~~~~   51 (289)
T cd00200           3 RTLKGHTGGVT--CVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-----------------------------LKGHT   51 (289)
T ss_pred             hHhcccCCCEE--EEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE-----------------------------EecCC
Confidence            45678999999  9999997       6699999999988764443                             13555


Q ss_pred             c-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342          394 Q-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  472 (701)
Q Consensus       394 ~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  472 (701)
                      . +..+.|+|+++.+++++.|+.+++|++.    .++...   ....|...+.++.|+|+++.+++++.||.+.+||+  
T Consensus        52 ~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~----~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~--  122 (289)
T cd00200          52 GPVRDVAASADGTYLASGSSDKTIRLWDLE----TGECVR---TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV--  122 (289)
T ss_pred             cceeEEEECCCCCEEEEEcCCCeEEEEEcC----cccceE---EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC--
Confidence            6 8899999999999999999999999997    322222   12246778999999999888888887999999966  


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeE
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT  549 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~  549 (701)
                                         .+++.... + ..|...+.+++++  +.++++++ ++.|++||+++++.+..+..|...+.
T Consensus       123 -------------------~~~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~  181 (289)
T cd00200         123 -------------------ETGKCLTT-L-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN  181 (289)
T ss_pred             -------------------CCcEEEEE-e-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccc
Confidence                               33443322 2 3577889999999  77888888 99999999998988888888888999


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          550 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       550 ~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      +++|+|++ .+++++.|+.|++||+++++.+..+.+|...+.+++|+|++.++++++.|+.|++||+.+++..     ..
T Consensus       182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~-----~~  256 (289)
T cd00200         182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV-----QT  256 (289)
T ss_pred             eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE-----EE
Confidence            99999999 9999999999999999999999999889999999999999999998888999999999986422     21


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                      +. +|.   ..+.+++|+|++++++++ .|+.+++|+
T Consensus       257 ~~-~~~---~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         257 LS-GHT---NSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cc-ccC---CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            22 444   789999999999999985 899999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=6e-31  Score=257.15  Aligned_cols=253  Identities=17%  Similarity=0.198  Sum_probs=214.5

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |..+.|.|+|+.|++|+..|.+.+|+...       ..+..-...|...|.++.|+++|.++++|+.+|.|++|+.    
T Consensus        99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~-------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp----  167 (464)
T KOG0284|consen   99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTS-------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP----  167 (464)
T ss_pred             eeeEEEcCCCceeEeecccccEEEecCce-------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc----
Confidence            88999999999999999999999999741       1212223469999999999999999999999999999954    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF  551 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l  551 (701)
                                       .-+.+..  +...|...|++++|+  +..+++++ ||+|+|||....+....+.+|.-.|.++
T Consensus       168 -----------------nmnnVk~--~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv  228 (464)
T KOG0284|consen  168 -----------------NMNNVKI--IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV  228 (464)
T ss_pred             -----------------chhhhHH--hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence                             2222221  324566899999999  88899999 8999999999998888999999999999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc
Q 005342          552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  630 (701)
Q Consensus       552 ~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~  630 (701)
                      .|+|.- +|++|+.|..|++||.+++.++.++.+|+..|..+.|+|++++|+|+|.|..++++|+++.+     .+....
T Consensus       229 dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk-----El~~~r  303 (464)
T KOG0284|consen  229 DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK-----ELFTYR  303 (464)
T ss_pred             ccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-----HHHHhh
Confidence            999999 99999999999999999999999999999999999999999999999999999999999632     233122


Q ss_pred             CCCCCCCCCeEEEEEcCCCCEEE-EE-ecCeEEEEECCCCceeeeeee-----eeEEEEEeeE
Q 005342          631 TGLVPETTIVNHIQFHPDQIHLL-SI-HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQIV  686 (701)
Q Consensus       631 ~~~~~~~~~v~~v~~spdg~~l~-sg-~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~  686 (701)
                       +|.   ..|+++.|+|-..-|+ +| .||.|..|.+...+.+..++.     |.+++|.|..
T Consensus       304 -~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG  362 (464)
T KOG0284|consen  304 -GHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG  362 (464)
T ss_pred             -cch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccc
Confidence             565   8999999999765544 44 899999999986777776665     8899987753

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2e-28  Score=286.04  Aligned_cols=305  Identities=14%  Similarity=0.164  Sum_probs=232.9

Q ss_pred             ccccCcccccccCccceeEEE-----eecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCC
Q 005342          303 PMLQDKLKFPSMDKSRLLSLI-----KQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQ  370 (701)
Q Consensus       303 ~~la~~i~iwd~~~~~~~~~l-----~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~  370 (701)
                      +++.+-+++|+..+-+....+     ..|.+.|.  +++|+|+       +.|++|+|||..+......           
T Consensus       454 ~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-----------  520 (793)
T PLN00181        454 PFLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVC--AIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-----------  520 (793)
T ss_pred             hhhhhhhhhhcccceEEEEeeccccccCCCCcEE--EEEECCCCCEEEEEeCCCEEEEEECCccccccc-----------
Confidence            345577888888766655443     34888999  9999998       8899999999764211000           


Q ss_pred             CCCCcccccCCCCCCCccccCCCceEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEE
Q 005342          371 EGRPLDASSGDDSNDSSCFNDNNQSRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY  449 (701)
Q Consensus       371 ~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~  449 (701)
                      ..+.          +...+.++..|.+++|+| ++.+|++++.||+|++||+.    +++...   ...+|.+.|++++|
T Consensus       521 ~~~~----------~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~----~~~~~~---~~~~H~~~V~~l~~  583 (793)
T PLN00181        521 DIHY----------PVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA----RSQLVT---EMKEHEKRVWSIDY  583 (793)
T ss_pred             cccc----------ceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECC----CCeEEE---EecCCCCCEEEEEE
Confidence            0000          011123343489999987 47899999999999999997    454433   33568999999999


Q ss_pred             ec-CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-C
Q 005342          450 SH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-G  524 (701)
Q Consensus       450 sp-dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-d  524 (701)
                      +| ++.+|++|+.||.|++||+                     .++..+.. +.  +...+.++.|+   |.++++|+ |
T Consensus       584 ~p~~~~~L~Sgs~Dg~v~iWd~---------------------~~~~~~~~-~~--~~~~v~~v~~~~~~g~~latgs~d  639 (793)
T PLN00181        584 SSADPTLLASGSDDGSVKLWSI---------------------NQGVSIGT-IK--TKANICCVQFPSESGRSLAFGSAD  639 (793)
T ss_pred             cCCCCCEEEEEcCCCEEEEEEC---------------------CCCcEEEE-Ee--cCCCeEEEEEeCCCCCEEEEEeCC
Confidence            97 7899999999999999976                     33333322 21  23578899985   88999999 9


Q ss_pred             CeEEEEeCCCCc-EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC------CceEEeecCCCCCeEEEEEec
Q 005342          525 GKISIFSLETFQ-TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT------KKTKAKLKGHQNRITCLAYSL  596 (701)
Q Consensus       525 g~I~iwd~~~~~-~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~------~~~~~~l~~h~~~V~~v~~sp  596 (701)
                      |.|++||+++++ .+..+.+|...|.++.|. ++ .+++++.|++|++||++.      ...+..+.+|...++.++|+|
T Consensus       640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~  718 (793)
T PLN00181        640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV  718 (793)
T ss_pred             CeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC
Confidence            999999998765 567788899999999997 56 999999999999999974      356788999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec-------cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-------QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       597 dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~-------~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      ++++|++|+.|++|++|+...+.+.........       ..++   ...|.+++|+|++..|++| .||.|+||++
T Consensus       719 ~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        719 SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA---SQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC---CcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999999999999876543322211100       0122   2679999999999999996 8999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.8e-29  Score=267.19  Aligned_cols=281  Identities=14%  Similarity=0.223  Sum_probs=234.1

Q ss_pred             eecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-e
Q 005342          324 KQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-S  395 (701)
Q Consensus       324 ~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V  395 (701)
                      +.-+..|.  .++|+|.       =..|.|.+||..-+.++..          |                   .+|++ |
T Consensus         6 EskSsRvK--glsFHP~rPwILtslHsG~IQlWDYRM~tli~r----------F-------------------deHdGpV   54 (1202)
T KOG0292|consen    6 ESKSSRVK--GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR----------F-------------------DEHDGPV   54 (1202)
T ss_pred             hccccccc--ceecCCCCCEEEEeecCceeeeehhhhhhHHhh----------h-------------------hccCCcc
Confidence            33445566  8888888       4678999999998888777          2                   46778 9


Q ss_pred             EEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342          396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  475 (701)
                      +.++|||++.++++|+.|-.|++|+..    ..+|.-   +..+|-+.|..+.|++.-.+|+++|.|.+|+|||+     
T Consensus        55 Rgv~FH~~qplFVSGGDDykIkVWnYk----~rrclf---tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw-----  122 (1202)
T KOG0292|consen   55 RGVDFHPTQPLFVSGGDDYKIKVWNYK----TRRCLF---TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW-----  122 (1202)
T ss_pred             ceeeecCCCCeEEecCCccEEEEEecc----cceehh---hhccccceeEEeeccCCCceEEEccCCCeEEEEec-----
Confidence            999999999999999999999999997    555544   66789999999999999999999999999999987     


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc----------------
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ----------------  536 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~----------------  536 (701)
                                      .++.++..  .++|...|.|.+|.  ...+++++ |.+|++||+..-+                
T Consensus       123 ----------------qsr~~iav--ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~  184 (1202)
T KOG0292|consen  123 ----------------QSRKCIAV--LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ  184 (1202)
T ss_pred             ----------------cCCceEEE--EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence                            45555542  26999999999999  88999999 9999999985211                


Q ss_pred             -------------EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce--EEeecCCCCCeEEEEEecCCCE
Q 005342          537 -------------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNV  600 (701)
Q Consensus       537 -------------~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~v~~spdg~~  600 (701)
                                   ..+.+.||...|+-++|+|.- .|++|++|..|++|.+...+.  +.+.+||.+.|.++-|+|..++
T Consensus       185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l  264 (1202)
T KOG0292|consen  185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL  264 (1202)
T ss_pred             ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence                         113456899999999999999 999999999999999876553  5678899999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeee
Q 005342          601 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       601 l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l  674 (701)
                      ++|.|+|++|+|||+....     .++++...+    ...+.++-+|..+++++|+|+.+.||.++.-++...+
T Consensus       265 IlSnsEDksirVwDm~kRt-----~v~tfrren----dRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v  329 (1202)
T KOG0292|consen  265 ILSNSEDKSIRVWDMTKRT-----SVQTFRREN----DRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAV  329 (1202)
T ss_pred             eEecCCCccEEEEeccccc-----ceeeeeccC----CeEEEEEecCCcceeeeecCCceEEEEEcccCceEEE
Confidence            9999999999999999843     333233333    7789999999999999999999999988755544333

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=8.3e-29  Score=269.22  Aligned_cols=280  Identities=18%  Similarity=0.241  Sum_probs=232.4

Q ss_pred             eEEEeec-CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccC
Q 005342          320 LSLIKQI-MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFND  391 (701)
Q Consensus       320 ~~~l~~h-~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~  391 (701)
                      ...+..| ...|.  |+.|+|+       +.|+.+++|+..++.. ..                          ...+.+
T Consensus       151 ~~~~~~~~~~sv~--~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~--------------------------~~~l~~  201 (456)
T KOG0266|consen  151 EQTLAGHECPSVT--CVDFSPDGRALAAASSDGLIRIWKLEGIKS-NL--------------------------LRELSG  201 (456)
T ss_pred             eeeecccccCceE--EEEEcCCCCeEEEccCCCcEEEeecccccc-hh--------------------------hccccc
Confidence            3444444 66788  9999999       7999999999977663 11                          112357


Q ss_pred             CCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342          392 NNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW  470 (701)
Q Consensus       392 h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  470 (701)
                      |.. |..++|+|+|+++++|+.|+++++||+..   .+.+.+   .+.+|...|++++|+|+|+.+++|+.|++|++||+
T Consensus       202 h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---~~~~~~---~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~  275 (456)
T KOG0266|consen  202 HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---DGRNLK---TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV  275 (456)
T ss_pred             cccceeeeEECCCCcEEEEecCCceEEEeeccC---CCeEEE---EecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence            888 99999999999999999999999999942   445555   44589999999999999999999999999999955


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc--EEEEecCCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPP  545 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~--~~~~~~~~~  545 (701)
                                           .++++... + .+|...|++++|+  |+++++++ |+.|++||+.++.  +...+.++.
T Consensus       276 ---------------------~~~~~~~~-l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~  332 (456)
T KOG0266|consen  276 ---------------------RTGECVRK-L-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE  332 (456)
T ss_pred             ---------------------cCCeEEEe-e-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC
Confidence                                 55666543 3 5899999999999  99999999 9999999999998  567776665


Q ss_pred             CC--eEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCC---eEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342          546 PI--ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR---ITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       546 ~~--i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~---V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      ..  ++++.|+|++ ++++++.|+.+++||+..+..+..+.+|...   +.+...++.+.++++|+.|+.|++||..++.
T Consensus       333 ~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  333 NSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG  412 (456)
T ss_pred             CCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence            44  8999999999 9999999999999999999999999998874   4445567789999999999999999999864


Q ss_pred             eeeeeeeeeccCCC-CCCCCCeEEEEEcCCCCEEEEE---ecCeEEEEECC
Q 005342          620 KLCSKFLHSFQTGL-VPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAP  666 (701)
Q Consensus       620 ~~~~~~l~~~~~~~-~~~~~~v~~v~~spdg~~l~sg---~Dg~I~iwd~~  666 (701)
                      ..+  .   + .+| .   ..+..+.++|..++++++   .|+.+++|...
T Consensus       413 ~~~--~---l-~~h~~---~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  413 ILQ--R---L-EGHSK---AAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             hhh--h---h-cCCCC---CceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            222  2   2 255 4   889999999999999984   59999999764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=7.4e-29  Score=233.93  Aligned_cols=275  Identities=16%  Similarity=0.217  Sum_probs=224.5

Q ss_pred             eEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342          320 LSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN  392 (701)
Q Consensus       320 ~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h  392 (701)
                      +..+.+|.+.|.  .+.|+|+       +.|..|.+|++..... ..                           -.+++|
T Consensus        40 ~m~l~gh~geI~--~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-N~---------------------------~~lkgH   89 (338)
T KOG0265|consen   40 IMLLPGHKGEIY--TIKFHPDGSCFASGGSDRAIVLWNVYGDCE-NF---------------------------WVLKGH   89 (338)
T ss_pred             hhhcCCCcceEE--EEEECCCCCeEeecCCcceEEEEecccccc-ce---------------------------eeeccc
Confidence            445789999999  9999999       8999999999753221 11                           125689


Q ss_pred             Cc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCE-EEEEECCCcEEEEec
Q 005342          393 NQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF-LVALTQTATHKLWKW  470 (701)
Q Consensus       393 ~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~-l~s~s~dg~i~vwd~  470 (701)
                      .+ |..+.|.+|+..+++++.|++++.||.+    +|++..   ...+|..-|.++.-+.-|.. +.+++.||++++||+
T Consensus        90 sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~----tG~~~r---k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~  162 (338)
T KOG0265|consen   90 SGAVMELHGMRDGSHILSCGTDKTVRGWDAE----TGKRIR---KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDI  162 (338)
T ss_pred             cceeEeeeeccCCCEEEEecCCceEEEEecc----cceeee---hhccccceeeecCccccCCeEEEecCCCceEEEEee
Confidence            99 9999999999999999999999999998    776655   55678888988885555554 456667999999977


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI  547 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~  547 (701)
                      +.                     ...+.. +  ..+..++++.|.  +..+.+|+ |+.|++||++.+...+.+.||..+
T Consensus       163 R~---------------------k~~~~t-~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt  218 (338)
T KOG0265|consen  163 RK---------------------KEAIKT-F--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT  218 (338)
T ss_pred             cc---------------------cchhhc-c--ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence            43                     332221 1  245689999999  88899999 999999999999999999999999


Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEEeCCC----CceEEeecCCCC----CeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          548 ATYFILLPQD-LFAFGFDDSSILVHCPCT----KKTKAKLKGHQN----RITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       548 i~~l~~spdg-~l~~gs~dg~I~iwd~~~----~~~~~~l~~h~~----~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      |+.+..+|+| ++.+.+.|.++++||++-    ..++..+.||..    ....++|+|++..+.+|+.|..+++||..+.
T Consensus       219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence            9999999999 999999999999999985    345777887543    3456799999999999999999999999884


Q ss_pred             eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       619 ~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                      .     .+..++ ||.   +.|++++|+|...++.++ .|.+|++=+
T Consensus       299 ~-----~lyklp-Gh~---gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  299 R-----ILYKLP-GHY---GSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             c-----EEEEcC-Ccc---eeEEEeeecCCCcEEEEeccCceeEeec
Confidence            3     233244 665   999999999999999985 899987643

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=2.2e-29  Score=242.12  Aligned_cols=261  Identities=15%  Similarity=0.163  Sum_probs=226.5

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +.+|.+ |.++++.|-.++|++|+.|++++|||+.    +++...   +..+|-..|..+++|+-..|+++++.|+.|+-
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla----tg~Lkl---tltGhi~~vr~vavS~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA----TGQLKL---TLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCCceeEEEEcc----cCeEEE---eecchhheeeeeeecccCceEEEecCCCeeEE
Confidence            789999 9999999999999999999999999998    776544   56789999999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      ||+                     +.++++.. + .+|-+.|.|++..  -+.|++|+ |.++++||+++...+..+.||
T Consensus       220 wDL---------------------e~nkvIR~-Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH  276 (460)
T KOG0285|consen  220 WDL---------------------EYNKVIRH-Y-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH  276 (460)
T ss_pred             Eec---------------------hhhhhHHH-h-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC
Confidence            965                     55555532 2 4899999999999  78899999 999999999999999999999


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                      ..+|.++.+.|-. .+++||.|++|++||++.|+...++..|+..|.+++.+|....+||+|.| .|+-|++..|+... 
T Consensus       277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~-  354 (460)
T KOG0285|consen  277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQ-  354 (460)
T ss_pred             CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhh-
Confidence            9999999999988 99999999999999999999999999999999999999999999999987 69999999985322 


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee-----e-------eeEEEEEeeEEee
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL-----L-------ISHIMFVQIVVKF  689 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~-----~-------i~~~~fs~~~~~f  689 (701)
                       .+.    +|.   ..|++++.+.||-++.-|+.|.+..||.++|-..+...     |       |...+|.....+.
T Consensus       355 -nls----gh~---~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl  424 (460)
T KOG0285|consen  355 -NLS----GHN---AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL  424 (460)
T ss_pred             -ccc----ccc---ceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence             122    665   88999999999866655689999999999987666552     2       7778886554443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=3.2e-28  Score=235.30  Aligned_cols=299  Identities=14%  Similarity=0.144  Sum_probs=243.2

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      ..+.++..|++.|.  +++.+|+       +.|....||+..+|.....                             +.
T Consensus        55 dS~~tF~~H~~svF--avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e-----------------------------lt  103 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVF--AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE-----------------------------LT  103 (399)
T ss_pred             cceeehhhcCCceE--EEEeCCCCceEEecCCCceEEEEEccCCcceeE-----------------------------ec
Confidence            45678899999999  9999998       8899999999999985554                             24


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      +|+. |.++.|+.||.+||||+.+|.|.||+..    ++.... .  .....+.+.-+.|+|-+..|++|+.||.+.+|.
T Consensus       104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s----tg~~~~-~--~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~  176 (399)
T KOG0296|consen  104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS----TGGEQW-K--LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQ  176 (399)
T ss_pred             CCCCceEEEEEccCceEEEecCCCccEEEEEcc----cCceEE-E--eecccCceEEEEecccccEEEeecCCCcEEEEE
Confidence            7888 9999999999999999999999999998    443222 1  112457888999999999999999999999999


Q ss_pred             cCCCCc-----------------cccccccc----eeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CC
Q 005342          470 WQSNKQ-----------------SLEEENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG  525 (701)
Q Consensus       470 ~~~~~~-----------------~~g~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg  525 (701)
                      +.....                 ++|+.+..    ..+++|++.+++.+.+ +........+++.++  +..++.|+ ++
T Consensus       177 ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~-~~~~e~~~~~~~~~~~~~~~~~~g~~e~  255 (399)
T KOG0296|consen  177 IPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHK-ITQAEGLELPCISLNLAGSTLTKGNSEG  255 (399)
T ss_pred             CCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEE-ecccccCcCCccccccccceeEeccCCc
Confidence            877332                 44555442    3499999999996644 222334567788888  88888888 89


Q ss_pred             eEEEEeCCCCcEEEEec--------CCCCCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEE
Q 005342          526 KISIFSLETFQTLATFA--------NPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  593 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~--------~~~~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~  593 (701)
                      .+++.+..+|+.+....        .+...+.++.+.|..    +.|+|+-||+|.|||+...++.+.+. |..+|+.+.
T Consensus       256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~  334 (399)
T KOG0296|consen  256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLK  334 (399)
T ss_pred             cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEE
Confidence            99999999998887766        334455667666655    88999999999999998887766665 899999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECC
Q 005342          594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP  666 (701)
Q Consensus       594 ~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~  666 (701)
                      |-+ ..+|++++.+|.|+.||.++|...  ..+.    ||.   ..|.+++.+|+++++++ |.|++.+||++.
T Consensus       335 w~~-t~~l~t~c~~g~v~~wDaRtG~l~--~~y~----GH~---~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  335 WLN-TDYLLTACANGKVRQWDARTGQLK--FTYT----GHQ---MGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcC-cchheeeccCceEEeeeccccceE--EEEe----cCc---hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            998 789999999999999999999643  3344    887   99999999999999999 589999999874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=3e-28  Score=264.85  Aligned_cols=260  Identities=17%  Similarity=0.183  Sum_probs=214.2

Q ss_pred             Cc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342          393 NQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ  471 (701)
Q Consensus       393 ~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  471 (701)
                      .. |.++.|+|+|+.+++++.|+.+++|+......  ....   ...+|...|.+++|+|||+++++++.|+++++||+.
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~---~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLR---ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhc---cccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            44 99999999999999999999999999963221  0111   235799999999999999999999999999999651


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA  548 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i  548 (701)
                                          ..+..+.. + .+|...|++++|+  |+.+++|+ |++|++||+++++++..+.+|.+.|
T Consensus       234 --------------------~~~~~~~~-l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i  291 (456)
T KOG0266|consen  234 --------------------DDGRNLKT-L-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI  291 (456)
T ss_pred             --------------------CCCeEEEE-e-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce
Confidence                                33344432 4 4899999999999  98999999 9999999999999999999999999


Q ss_pred             EEEEEcCCC-eEEEEeCCCcEEEEeCCCCc--eEEeecCCCCC--eEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342          549 TYFILLPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNR--ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       549 ~~l~~spdg-~l~~gs~dg~I~iwd~~~~~--~~~~l~~h~~~--V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                      ++++|++++ ++++++.|+.|++||+.++.  +...+.++...  ++++.|+|++.++++++.|+.+++||+..+...  
T Consensus       292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~--  369 (456)
T KOG0266|consen  292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV--  369 (456)
T ss_pred             EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce--
Confidence            999999999 99999999999999999998  56788877665  999999999999999999999999999987522  


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-----eeEEEEEee
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQI  685 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~  685 (701)
                      ....    +|......+.+...++.++++++| .|+.|++||+.++..+..+.+     +..++++|.
T Consensus       370 ~~~~----~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~  433 (456)
T KOG0266|consen  370 GTYT----GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT  433 (456)
T ss_pred             eeec----ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence            2222    333100244555668899999997 899999999999888877776     455555443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=6.1e-28  Score=252.22  Aligned_cols=339  Identities=14%  Similarity=0.190  Sum_probs=267.2

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      |.|++|+..+...+-++.+|...|+  ++.|...       |.|+.|.+||+-....+..                    
T Consensus        87 GsVqif~~~s~~~~~tfngHK~AVt--~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r--------------------  144 (888)
T KOG0306|consen   87 GSVQIFSLESEEILITFNGHKAAVT--TLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR--------------------  144 (888)
T ss_pred             ceEEeeccCCCceeeeecccccceE--EEEEcccCceEeecCCCccEEEEEeccceeeEE--------------------
Confidence            9999999999999999999999999  9999988       8999999999977666555                    


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s  458 (701)
                               |+||.. |+..-|..+.+++++++.|+.+++||+.    +..|....   -.|.+.++++++.+  +.+++
T Consensus       145 ---------L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~----tqhCf~Th---vd~r~Eiw~l~~~~--~~lvt  206 (888)
T KOG0306|consen  145 ---------LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE----TQHCFETH---VDHRGEIWALVLDE--KLLVT  206 (888)
T ss_pred             ---------eecchHHHhHHhccCCCeEEEEeccCceEEEEecc----cceeeeEE---ecccceEEEEEEec--ceEEE
Confidence                     356777 7778888888999999999999999998    78887733   36899999999997  78999


Q ss_pred             EECCCcEEEEecCCCCc-------------------ccccccc-------------------------------------
Q 005342          459 LTQTATHKLWKWQSNKQ-------------------SLEEENV-------------------------------------  482 (701)
Q Consensus       459 ~s~dg~i~vwd~~~~~~-------------------~~g~~~~-------------------------------------  482 (701)
                      ++.|+.+++|++..+..                   ..|+.+.                                     
T Consensus       207 ~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk  286 (888)
T KOG0306|consen  207 AGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKK  286 (888)
T ss_pred             EecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHH
Confidence            99999999999822111                   0000000                                     


Q ss_pred             ---------------cee-----------------------------------------eEEeeCCC-CeE------Eee
Q 005342          483 ---------------NME-----------------------------------------SQLYQPSS-KLV------MTN  499 (701)
Q Consensus       483 ---------------~~~-----------------------------------------i~~~d~~~-~~~------~~~  499 (701)
                                     .+.                                         +..|..+. +..      ..+
T Consensus       287 ~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~  366 (888)
T KOG0306|consen  287 LKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSN  366 (888)
T ss_pred             HHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccce
Confidence                           000                                         11111111 000      000


Q ss_pred             cccCCCCCCeEEEEec-C-CEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC
Q 005342          500 DIAADPKDSISCFALR-G-SHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK  576 (701)
Q Consensus       500 ~~~~~~~~~v~~l~~s-~-~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~  576 (701)
                      .-..+|...|.++++| + ..+++|+++.+++|+..+.++++++..  ..+.+..|-|.+ ++++|...|.+.+||+.+.
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence            1114799999999999 4 445555589999999999999999974  378899999999 9999999999999999999


Q ss_pred             ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-----Cee-----------------------------ee
Q 005342          577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-----WKK-----------------------------LC  622 (701)
Q Consensus       577 ~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~-----g~~-----------------------------~~  622 (701)
                      ..+.+.+.|.+.|++++.+||+..+++||.|.+|++||..-     |..                             ..
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La  524 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA  524 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence            99999999999999999999999999999999999999642     110                             00


Q ss_pred             ---------------eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEE
Q 005342          623 ---------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMF  682 (701)
Q Consensus       623 ---------------~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~f  682 (701)
                                     .+..-++. ||.   -||.|+.+|||++++++| .|.+|+||-+.=|.|.+++.+    |.++.|
T Consensus       525 VsLLdnTVkVyflDtlKFflsLY-GHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F  600 (888)
T KOG0306|consen  525 VSLLDNTVKVYFLDTLKFFLSLY-GHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF  600 (888)
T ss_pred             EEeccCeEEEEEecceeeeeeec-ccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence                           00000011 444   899999999999999996 899999999999999999988    899999


Q ss_pred             EeeEEeeee
Q 005342          683 VQIVVKFHS  691 (701)
Q Consensus       683 s~~~~~f~~  691 (701)
                      -|....|++
T Consensus       601 ~P~~~~FFt  609 (888)
T KOG0306|consen  601 LPKTHLFFT  609 (888)
T ss_pred             cccceeEEE
Confidence            887665543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.8e-28  Score=251.17  Aligned_cols=286  Identities=14%  Similarity=0.163  Sum_probs=235.7

Q ss_pred             EeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCce
Q 005342          323 IKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQS  395 (701)
Q Consensus       323 l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V  395 (701)
                      +..+.+.|.  ++.|+|.       =-.|.+.|||.++....+.+          +-                  ....|
T Consensus         9 ~~~rSdRVK--sVd~HPtePw~la~LynG~V~IWnyetqtmVksf----------eV------------------~~~Pv   58 (794)
T KOG0276|consen    9 FQSRSDRVK--SVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF----------EV------------------SEVPV   58 (794)
T ss_pred             hhccCCcee--eeecCCCCceEEEeeecCeeEEEecccceeeeee----------ee------------------cccch
Confidence            344667777  8888877       35789999999988777662          11                  01127


Q ss_pred             EEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342          396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  475 (701)
                      ++..|-+.-+.+++|+.|..|++++.+    +++..+   .+..|.+.|.+++.+|...+++++|.|-.|++||++.   
T Consensus        59 Ra~kfiaRknWiv~GsDD~~IrVfnyn----t~ekV~---~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~---  128 (794)
T KOG0276|consen   59 RAAKFIARKNWIVTGSDDMQIRVFNYN----TGEKVK---TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN---  128 (794)
T ss_pred             hhheeeeccceEEEecCCceEEEEecc----cceeeE---EeeccccceeeeeecCCCCeEEecCCccEEEEeeccC---
Confidence            778899999999999999999999998    554333   4567999999999999999999999999999998733   


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF  551 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l  551 (701)
                                        +-.....+ .+|...|.+++|.   .+.+++++ |++|++|.+....+..++.+|...|+|+
T Consensus       129 ------------------~wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~V  189 (794)
T KOG0276|consen  129 ------------------EWACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCV  189 (794)
T ss_pred             ------------------ceeeeeEE-cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceE
Confidence                              22111223 5899999999999   77899999 9999999999999999999999999999


Q ss_pred             EEcCCC---eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          552 ILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       552 ~~spdg---~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      .+-+.|   ++++|++|.+|+|||..+..+++++.||...|+.+.|+|.-..++|||+||+++||+..+-+...  .   
T Consensus       190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~--t---  264 (794)
T KOG0276|consen  190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK--T---  264 (794)
T ss_pred             EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhh--h---
Confidence            999877   99999999999999999999999999999999999999999999999999999999999854322  1   


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      +.-+.    ..+++|+-.+.+..+++|.|....+..+..+++..++..
T Consensus       265 Ln~gl----eRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~  308 (794)
T KOG0276|consen  265 LNYGL----ERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDS  308 (794)
T ss_pred             hhcCC----ceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecC
Confidence            22233    789999999998889999666666666666666555544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=2.8e-27  Score=241.42  Aligned_cols=258  Identities=21%  Similarity=0.257  Sum_probs=218.7

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +++|.. |.+++|+|+++++++++.||.+.+|++.    .+....   ....|...+..+.|+|+++.+++++.||.+.+
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~----~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i   77 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE----TGELLR---TLKGHTGPVRDVAASADGTYLASGSSDKTIRL   77 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEee----CCCcEE---EEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence            567888 9999999999999999999999999997    333222   22347788899999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      |++.                     ++..... + ..|...+.++.|+  +.++++++ +|.|.+||+.+++....+..|
T Consensus        78 ~~~~---------------------~~~~~~~-~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  134 (289)
T cd00200          78 WDLE---------------------TGECVRT-L-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH  134 (289)
T ss_pred             EEcC---------------------cccceEE-E-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC
Confidence            9763                     3222211 2 3577789999999  67888888 999999999989988888888


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                      ...+.+++++|++ ++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++++.|+.|++||+.+++... 
T Consensus       135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-  213 (289)
T cd00200         135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG-  213 (289)
T ss_pred             CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec-
Confidence            9999999999999 88888889999999999999999999999999999999999999999999999999999864321 


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe-cCeEEEEECCCCceeeeeee----eeEEEEEee
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~-Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~  685 (701)
                       .   +. .|.   ..+.++.|+|++.+++++. |+.|++||+.+++....+.+    |.+++|+|.
T Consensus       214 -~---~~-~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (289)
T cd00200         214 -T---LR-GHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD  272 (289)
T ss_pred             -c---hh-hcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence             1   21 343   7899999999988888875 99999999999998888876    899999876

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=3.9e-29  Score=249.78  Aligned_cols=278  Identities=14%  Similarity=0.158  Sum_probs=226.9

Q ss_pred             ccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccC-CccccccccccCCCCCCCCCCcccccCCCCCCC
Q 005342          316 KSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPT-VSNLRYASSILTDKPNQEGRPLDASSGDDSNDS  386 (701)
Q Consensus       316 ~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~  386 (701)
                      +.+.++++.+|+..|+  ++.|.|.        +.|+.|+||++.. +.|+++          +                
T Consensus       203 Pkk~~~~~~gH~kgvs--ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt----------f----------------  254 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVS--AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT----------F----------------  254 (503)
T ss_pred             cHhheeeccCCccccc--hhhhccceeeEEEecCCCceEEEEEEecCcceehh----------h----------------
Confidence            5577889999999999  9999995        9999999999987 777776          2                


Q ss_pred             ccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCc
Q 005342          387 SCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTAT  464 (701)
Q Consensus       387 ~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~  464 (701)
                         .||.. |..++|+++|..+.|++.|+.+++||++    +|++.. .+  . ....++|+.|.||+ +.+++|+.|+.
T Consensus       255 ---~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE----TG~~~~-~f--~-~~~~~~cvkf~pd~~n~fl~G~sd~k  323 (503)
T KOG0282|consen  255 ---KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE----TGQVLS-RF--H-LDKVPTCVKFHPDNQNIFLVGGSDKK  323 (503)
T ss_pred             ---hcchhhhhhhhccccCCeeeeeecceeeeeeccc----cceEEE-EE--e-cCCCceeeecCCCCCcEEEEecCCCc
Confidence               46777 9999999999999999999999999999    887765 22  1 34678999999999 78899999999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~  541 (701)
                      |+.||+                     .+++++.. + ..|-+.|..+.|-  |.++++.+ |+.+++|+.+.+..+..+
T Consensus       324 i~~wDi---------------------Rs~kvvqe-Y-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i  380 (503)
T KOG0282|consen  324 IRQWDI---------------------RSGKVVQE-Y-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI  380 (503)
T ss_pred             EEEEec---------------------cchHHHHH-H-HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhh
Confidence            999965                     56665542 2 3688899999998  88999999 899999999887765544


Q ss_pred             c-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---ceEEeecCCCC--CeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342          542 A-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWD  614 (701)
Q Consensus       542 ~-~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~---~~~~~l~~h~~--~V~~v~~spdg~~l~s~s~D~~I~vwd  614 (701)
                      . .......++..+|++ ++++-+.|+.|.++.+...   ...+.++||..  .-..+.|||||.+|++|+.||.+.+||
T Consensus       381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence            3 234456789999999 9999999999999986542   33456788864  456789999999999999999999999


Q ss_pred             CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEE-EecCeEEEEE
Q 005342          615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYE  664 (701)
Q Consensus       615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~s-g~Dg~I~iwd  664 (701)
                      .++-+     .+..+. .|.   .++..+.|+|.. ..+|+ |.||.|++||
T Consensus       461 wkt~k-----l~~~lk-ah~---~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  461 WKTTK-----LVSKLK-AHD---QPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             chhhh-----hhhccc-cCC---cceEEEEecCCCcceeEecccCceeEecC
Confidence            99843     333333 344   899999999974 45566 5899999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.8e-27  Score=248.77  Aligned_cols=302  Identities=13%  Similarity=0.188  Sum_probs=243.7

Q ss_pred             CcccccccCcccee---------EEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCC
Q 005342          307 DKLKFPSMDKSRLL---------SLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQE  371 (701)
Q Consensus       307 ~~i~iwd~~~~~~~---------~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~  371 (701)
                      +.+..+.++.....         -.+.+|...|.  .+++|.+      +..+.+++|+..+++|++++          +
T Consensus       344 Ntv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR--sl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi----------~  411 (888)
T KOG0306|consen  344 NTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR--SLCVSSDSILLASGAGESIKIWNRDTLKCIRTI----------T  411 (888)
T ss_pred             CceEEEEeccCCCCCccccccceeeeccchhhee--EEEeecCceeeeecCCCcEEEEEccCcceeEEe----------c
Confidence            56666665542111         35678999999  9999988      67799999999999999983          2


Q ss_pred             CCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec
Q 005342          372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH  451 (701)
Q Consensus       372 ~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp  451 (701)
                      ..                    .+-+..|-|.++++++|...|.+.++|+.    ......   ....|.+.+++++.+|
T Consensus       412 ~~--------------------y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla----S~~l~E---ti~AHdgaIWsi~~~p  464 (888)
T KOG0306|consen  412 CG--------------------YILASKFVPGDRYIVLGTKNGELQVFDLA----SASLVE---TIRAHDGAIWSISLSP  464 (888)
T ss_pred             cc--------------------cEEEEEecCCCceEEEeccCCceEEEEee----hhhhhh---hhhccccceeeeeecC
Confidence            21                    15678899999999999999999999998    333332   2235999999999999


Q ss_pred             CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEE
Q 005342          452 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS  528 (701)
Q Consensus       452 dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~  528 (701)
                      |++.+++||.|.+|++||........|...     ++......+.    +  .-...|.|+++|  |.+++++- |.+++
T Consensus       465 D~~g~vT~saDktVkfWdf~l~~~~~gt~~-----k~lsl~~~rt----L--el~ddvL~v~~Spdgk~LaVsLLdnTVk  533 (888)
T KOG0306|consen  465 DNKGFVTGSADKTVKFWDFKLVVSVPGTQK-----KVLSLKHTRT----L--ELEDDVLCVSVSPDGKLLAVSLLDNTVK  533 (888)
T ss_pred             CCCceEEecCCcEEEEEeEEEEeccCcccc-----eeeeeccceE----E--eccccEEEEEEcCCCcEEEEEeccCeEE
Confidence            999999999999999998732211000000     0000000011    1  235789999999  88888888 99999


Q ss_pred             EEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 005342          529 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD  607 (701)
Q Consensus       529 iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D  607 (701)
                      +|-+.+.+..-.+.||.-||.|+.+|||+ .+++||.|.+|++|-+.-|.+-+.+-+|...|.++.|-|+..++.++|.|
T Consensus       534 VyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD  613 (888)
T KOG0306|consen  534 VYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD  613 (888)
T ss_pred             EEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCc
Confidence            99999999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       608 ~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      +.|+-||-..-     ..++.+++||    ..|++++.+|+|.+++++ +|.+|++|.-..
T Consensus       614 ~kvKqWDg~kF-----e~iq~L~~H~----~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  614 GKVKQWDGEKF-----EEIQKLDGHH----SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ceEEeechhhh-----hhheeeccch----heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            99999998874     3344355555    899999999999999995 899999998644

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.5e-27  Score=217.37  Aligned_cols=261  Identities=12%  Similarity=0.098  Sum_probs=220.8

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +..|.+ |..+.|+-||+|.++|+.|.+|++|+..    .+.+.+   +..+|...|..++.+.|...+++|+.|..+.+
T Consensus        13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~----rg~lik---tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v   85 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL----RGALIK---TYSGHGHEVLDAALSSDNSKFASCGGDKAVQV   85 (307)
T ss_pred             ecccccceEEEEEccCCCEEEEcCCCceEEeeccc----ccceee---eecCCCceeeeccccccccccccCCCCceEEE
Confidence            567788 9999999999999999999999999997    676666   66789999999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC--cEEEEec
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF--QTLATFA  542 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~--~~~~~~~  542 (701)
                      ||+                     .+|+...+ + .+|.+.|+.+.|+  ...+++|+ |.++++||.++.  ++++.+.
T Consensus        86 wDV---------------------~TGkv~Rr-~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild  142 (307)
T KOG0316|consen   86 WDV---------------------NTGKVDRR-F-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD  142 (307)
T ss_pred             EEc---------------------ccCeeeee-c-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh
Confidence            954                     77777655 4 5899999999999  77899999 999999998764  5788888


Q ss_pred             CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          543 NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       543 ~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                      .....|.++.++.. .|++|+.||+++.||++.|+....+-||  +|+++.|++|++....++.|+++++.|-.+|+.+.
T Consensus       143 ea~D~V~Si~v~~h-eIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~  219 (307)
T KOG0316|consen  143 EAKDGVSSIDVAEH-EIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK  219 (307)
T ss_pred             hhcCceeEEEeccc-EEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence            77888999888655 7999999999999999999888776655  69999999999999999999999999999986432


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-----eeEEEEEeeEEee
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQIVVKF  689 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~~~f  689 (701)
                            ...||... ..-...+++....++++| .||.+++||+..++.+..++.     |+++++-|....|
T Consensus       220 ------sYkGhkn~-eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f  285 (307)
T KOG0316|consen  220 ------SYKGHKNM-EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF  285 (307)
T ss_pred             ------Hhcccccc-eeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccce
Confidence                  22255411 223455667777888886 899999999999998888876     7788888776655

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=8.2e-28  Score=233.43  Aligned_cols=295  Identities=16%  Similarity=0.177  Sum_probs=221.7

Q ss_pred             ecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342          325 QIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES  398 (701)
Q Consensus       325 ~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l  398 (701)
                      .|.++|.  ++.-.+.     +.||++++||... ++...                             +.||.+ |.++
T Consensus       103 ~hdDWVS--sv~~~~~~IltgsYDg~~riWd~~G-k~~~~-----------------------------~~Ght~~ik~v  150 (423)
T KOG0313|consen  103 LHDDWVS--SVKGASKWILTGSYDGTSRIWDLKG-KSIKT-----------------------------IVGHTGPIKSV  150 (423)
T ss_pred             cchhhhh--hhcccCceEEEeecCCeeEEEecCC-ceEEE-----------------------------EecCCcceeee
Confidence            4788888  7766677     8899999999753 33333                             237777 8877


Q ss_pred             EEcC-C--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342          399 TSLP-D--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       399 ~~sp-d--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  475 (701)
                      +|.- +  ...+++++.|.++++|.++.......+..   .-.+|...|.++...++|..+++|+.|..+.+|+......
T Consensus       151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~---~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~  227 (423)
T KOG0313|consen  151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK---VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE  227 (423)
T ss_pred             EEEecCCccceEEEecCCceEEEEEecCchhhhhHHh---HhcccccceeEEEecCCCCeEEeecccceeeecccCCCcc
Confidence            7743 3  33699999999999999973221111111   2238999999999999999999999999999999443332


Q ss_pred             cccccccc--eeeEEeeCCCC--eEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeE
Q 005342          476 SLEEENVN--MESQLYQPSSK--LVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT  549 (701)
Q Consensus       476 ~~g~~~~~--~~i~~~d~~~~--~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~  549 (701)
                      ........  -.-...+...+  ..+.  ...+|..+|.++.|+ ...+++++ |.+|+.||+.++..+.++. ....+.
T Consensus       228 ~~~E~~s~~rrk~~~~~~~~~~r~P~v--tl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~  304 (423)
T KOG0313|consen  228 DELESSSNRRRKKQKREKEGGTRTPLV--TLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLN  304 (423)
T ss_pred             ccccccchhhhhhhhhhhcccccCceE--EecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee-cCccee
Confidence            11111000  00000011222  2222  225999999999999 88999999 9999999999999988887 456789


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEeCCCCc---eEEeecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          550 YFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       550 ~l~~spdg-~l~~gs~dg~I~iwd~~~~~---~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      ++..+|.. +|++|+.|..|++||.+++.   +.+.|.||++.|.++.|+|. ...|++|+.|+++++||+++-.    .
T Consensus       305 ~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k----~  380 (423)
T KOG0313|consen  305 CISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK----A  380 (423)
T ss_pred             EeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC----C
Confidence            99999998 99999999999999998753   46789999999999999995 5588999999999999999842    3


Q ss_pred             eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                      ++..+. +|.   ..|.++.|+. +..+++| .|++|+|+.-.
T Consensus       381 plydI~-~h~---DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  381 PLYDIA-GHN---DKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             cceeec-cCC---ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            555444 444   8999999984 5677885 89999998753

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=3.6e-29  Score=239.48  Aligned_cols=248  Identities=15%  Similarity=0.164  Sum_probs=212.3

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGD  381 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D  381 (701)
                      ++|+|||..+-.++..|.+|++.|.  |+.|-.-     +.|.||++||+++|+++.++                     
T Consensus       217 nTikiWD~n~~~c~~~L~GHtGSVL--CLqyd~rviisGSSDsTvrvWDv~tge~l~tl---------------------  273 (499)
T KOG0281|consen  217 NTIKIWDKNSLECLKILTGHTGSVL--CLQYDERVIVSGSSDSTVRVWDVNTGEPLNTL---------------------  273 (499)
T ss_pred             CceEEeccccHHHHHhhhcCCCcEE--eeeccceEEEecCCCceEEEEeccCCchhhHH---------------------
Confidence            8999999999999999999999999  9999876     89999999999999998883                     


Q ss_pred             CCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342          382 DSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT  460 (701)
Q Consensus       382 ~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s  460 (701)
                              -+|.. |-.+.|+..  ++++++.|.++.+||+.... ...+..   ...+|...|..+.|+  .+++++++
T Consensus       274 --------ihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps-~it~rr---VLvGHrAaVNvVdfd--~kyIVsAS  337 (499)
T KOG0281|consen  274 --------IHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPT-DITLRR---VLVGHRAAVNVVDFD--DKYIVSAS  337 (499)
T ss_pred             --------hhhcceeEEEEEeCC--EEEEecCCceeEEEeccCch-HHHHHH---HHhhhhhheeeeccc--cceEEEec
Confidence                    25666 888888755  99999999999999997422 111222   234799999999986  56999999


Q ss_pred             CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342          461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLA  539 (701)
Q Consensus       461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~  539 (701)
                      .|.++++|+                     ..++.++.. + .+|...|-|+.+.|+++++|+ |.+|++||+..|.+++
T Consensus       338 gDRTikvW~---------------------~st~efvRt-l-~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLR  394 (499)
T KOG0281|consen  338 GDRTIKVWS---------------------TSTCEFVRT-L-NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR  394 (499)
T ss_pred             CCceEEEEe---------------------ccceeeehh-h-hcccccceehhccCeEEEecCCCceEEEEeccccHHHH
Confidence            999999995                     467777653 3 589999999999999999999 9999999999999999


Q ss_pred             EecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCc---------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342          540 TFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK---------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL  610 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~---------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I  610 (701)
                      .++||..-|.++.|... .|++|..||+|++||+.++.         ++.++..|++.|..+.|  |...+++++.|.+|
T Consensus       395 vLeGHEeLvRciRFd~k-rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtI  471 (499)
T KOG0281|consen  395 VLEGHEELVRCIRFDNK-RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTI  471 (499)
T ss_pred             HHhchHHhhhheeecCc-eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeE
Confidence            99999999999999654 89999999999999998754         23455669999999999  56789999999999


Q ss_pred             EEEECCCCe
Q 005342          611 CVWDAVGWK  619 (701)
Q Consensus       611 ~vwd~~~g~  619 (701)
                      -|||.-.+.
T Consensus       472 LiWdFl~~~  480 (499)
T KOG0281|consen  472 LIWDFLNGP  480 (499)
T ss_pred             EEEEcCCCC
Confidence            999998863

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.2e-28  Score=254.38  Aligned_cols=245  Identities=16%  Similarity=0.196  Sum_probs=212.8

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |..++|||....++++-..|.|++||..    .+.+..   .+..|.++|..+.|+|++..+++|+.|-.|+||+.    
T Consensus        12 vKglsFHP~rPwILtslHsG~IQlWDYR----M~tli~---rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY----   80 (1202)
T KOG0292|consen   12 VKGLSFHPKRPWILTSLHSGVIQLWDYR----MGTLID---RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY----   80 (1202)
T ss_pred             ccceecCCCCCEEEEeecCceeeeehhh----hhhHHh---hhhccCCccceeeecCCCCeEEecCCccEEEEEec----
Confidence            7889999999999999999999999998    565554   56679999999999999999999999999999965    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF  551 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l  551 (701)
                                       .+.+++-+ + .+|...|..+.|+  --+|++++ |.+|+||+..+++++..+.||...|+|.
T Consensus        81 -----------------k~rrclft-L-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcA  141 (1202)
T KOG0292|consen   81 -----------------KTRRCLFT-L-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCA  141 (1202)
T ss_pred             -----------------ccceehhh-h-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEee
Confidence                             45555432 3 4899999999999  67899999 8999999999999999999999999999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEeCCCCc-----------------------------eEEeecCCCCCeEEEEEecCCCEE
Q 005342          552 ILLPQD-LFAFGFDDSSILVHCPCTKK-----------------------------TKAKLKGHQNRITCLAYSLSLNVL  601 (701)
Q Consensus       552 ~~spdg-~l~~gs~dg~I~iwd~~~~~-----------------------------~~~~l~~h~~~V~~v~~spdg~~l  601 (701)
                      .|+|.. .|+++|-|.+|++||+..-+                             ..+.+.||...|+-++|+|.-.++
T Consensus       142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli  221 (1202)
T KOG0292|consen  142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI  221 (1202)
T ss_pred             ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence            999988 99999999999999985210                             235678999999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeeeee
Q 005342          602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       602 ~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      +||++|..|++|.+...+   ...+.+. .||.   +.|.++-|+|...++++ |.|++|+|||+.+-+.++++..
T Consensus       222 VSG~DDRqVKlWrmnetK---aWEvDtc-rgH~---nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr  290 (1202)
T KOG0292|consen  222 VSGADDRQVKLWRMNETK---AWEVDTC-RGHY---NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR  290 (1202)
T ss_pred             EecCCcceeeEEEecccc---ceeehhh-hccc---CCcceEEecCccceeEecCCCccEEEEecccccceeeeec
Confidence            999999999999988643   2233322 2666   99999999999999998 6999999999998888888854

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=2.7e-26  Score=268.13  Aligned_cols=266  Identities=14%  Similarity=0.160  Sum_probs=206.9

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCce---eEeecCCCCCCCCEEEEEEecC-CCEEEEEECCC
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC---RTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTA  463 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~---~~l~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg  463 (701)
                      +.+|.+ |.+++|+|+|+++|+|+.|+.|++|+.......+..   ....+   .+...+.+++|+|. +.++++++.||
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg  555 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEG  555 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe---cccCceeeEEeccCCCCEEEEEeCCC
Confidence            346888 999999999999999999999999998532111110   01111   23467999999874 78999999999


Q ss_pred             cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342          464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLA  539 (701)
Q Consensus       464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~  539 (701)
                      +|++||+                     .+++.+.. + .+|...|++++|+   +.+|++|+ ||.|++||++++..+.
T Consensus       556 ~v~lWd~---------------------~~~~~~~~-~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        556 VVQVWDV---------------------ARSQLVTE-M-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG  612 (793)
T ss_pred             eEEEEEC---------------------CCCeEEEE-e-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence            9999965                     44554432 2 4799999999997   67899999 9999999999999888


Q ss_pred             EecCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCc-eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342          540 TFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       540 ~~~~~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~  616 (701)
                      .+.. ...+.++.|++ +| .+++|+.||.|++||++++. .+..+.+|...|.++.|. ++.++++++.|++|++||+.
T Consensus       613 ~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        613 TIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             EEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            8874 46789999954 57 99999999999999998765 567788999999999997 78899999999999999998


Q ss_pred             CCee-eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee----------------e-e
Q 005342          617 GWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL----------------L-I  677 (701)
Q Consensus       617 ~g~~-~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~----------------~-i  677 (701)
                      .+.. .....+..+. +|.   ..++.++|+|++.+|++| .|+.|++|+......+..+.                . |
T Consensus       691 ~~~~~~~~~~l~~~~-gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V  766 (793)
T PLN00181        691 MSISGINETPLHSFM-GHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI  766 (793)
T ss_pred             CCccccCCcceEEEc-CCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence            5321 0112333233 565   889999999999999997 79999999987654432221                1 7


Q ss_pred             eEEEEEeeE
Q 005342          678 SHIMFVQIV  686 (701)
Q Consensus       678 ~~~~fs~~~  686 (701)
                      .+++|+|..
T Consensus       767 ~~v~ws~~~  775 (793)
T PLN00181        767 SSVCWRGQS  775 (793)
T ss_pred             EEEEEcCCC
Confidence            888888753

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=2.6e-26  Score=242.93  Aligned_cols=311  Identities=16%  Similarity=0.203  Sum_probs=243.6

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      |.+++||+.+++.+++++++.+.|+  ++.-+|-       ..+|+|.+.|+..++.+..+                   
T Consensus       182 G~lql~Nvrt~K~v~~f~~~~s~IT--~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF-------------------  240 (910)
T KOG1539|consen  182 GRLQLWNVRTGKVVYTFQEFFSRIT--AIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF-------------------  240 (910)
T ss_pred             CcEEEEEeccCcEEEEeccccccee--EeccCCcceEEEEeccCceEEEEEcccCcEEEEE-------------------
Confidence            8999999999999999999999999  9999997       78999999999999988873                   


Q ss_pred             CCCCCCCccccCCC-c-eEEEEEcCCCCe-EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342          380 GDDSNDSSCFNDNN-Q-SRESTSLPDADS-AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL  456 (701)
Q Consensus       380 ~D~~~~~~~l~~h~-~-V~~l~~spdg~~-l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l  456 (701)
                                 .|+ + |++++|..||+. +|+|+..|.+.+||+++.    +...  ...+.|.+.|....|-|....+
T Consensus       241 -----------k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k----kl~~--v~~nah~~sv~~~~fl~~epVl  303 (910)
T KOG1539|consen  241 -----------KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK----KLIN--VTRNAHYGSVTGATFLPGEPVL  303 (910)
T ss_pred             -----------EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC----eeee--eeeccccCCcccceecCCCceE
Confidence                       343 4 999999999985 566777799999999832    1111  1223466667777777777777


Q ss_pred             EEEECCCcEEEEecCCCCc-------cc------------------------------------------cc--------
Q 005342          457 VALTQTATHKLWKWQSNKQ-------SL------------------------------------------EE--------  479 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~-------~~------------------------------------------g~--------  479 (701)
                      ++++.|+.+++|-.+++.-       ..                                          |.        
T Consensus       304 ~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k  383 (910)
T KOG1539|consen  304 VTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK  383 (910)
T ss_pred             eeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence            7777777777665442211       00                                          00        


Q ss_pred             cccce----------------------------------e----------------------------------------
Q 005342          480 ENVNM----------------------------------E----------------------------------------  485 (701)
Q Consensus       480 ~~~~~----------------------------------~----------------------------------------  485 (701)
                      .....                                  .                                        
T Consensus       384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~  463 (910)
T KOG1539|consen  384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFV  463 (910)
T ss_pred             cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceE
Confidence            00000                                  0                                        


Q ss_pred             --------eEEeeCCCCeEEeecc--cCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342          486 --------SQLYQPSSKLVMTNDI--AADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI  552 (701)
Q Consensus       486 --------i~~~d~~~~~~~~~~~--~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~  552 (701)
                              |.+|+.++|..... +  .+.|..+|+.++.+  ++.+++++ +|.+.+||+.+...+..+. -...+.++.
T Consensus       464 ~IG~S~G~Id~fNmQSGi~r~s-f~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv  541 (910)
T KOG1539|consen  464 FIGYSKGTIDRFNMQSGIHRKS-FGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIV  541 (910)
T ss_pred             EEeccCCeEEEEEcccCeeecc-cccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceee
Confidence                    44445555543322 2  23688999999999  88889888 9999999999888777776 466788899


Q ss_pred             EcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC
Q 005342          553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT  631 (701)
Q Consensus       553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~  631 (701)
                      .+... .++++..|-.|+++|..+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++..+....+.    
T Consensus       542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd----  617 (910)
T KOG1539|consen  542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD----  617 (910)
T ss_pred             eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC----
Confidence            99888 9999999999999999999999999999999999999999999999999999999999998755433333    


Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEEE-ec-CeEEEEECCC
Q 005342          632 GLVPETTIVNHIQFHPDQIHLLSI-HE-GQIDVYEAPT  667 (701)
Q Consensus       632 ~~~~~~~~v~~v~~spdg~~l~sg-~D-g~I~iwd~~~  667 (701)
                            .+++++.|||+|.+||+. .| ..|++|.-.+
T Consensus       618 ------~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  618 ------SPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             ------CcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence                  889999999999999996 34 6799997543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=6.3e-28  Score=241.17  Aligned_cols=263  Identities=11%  Similarity=0.142  Sum_probs=219.1

Q ss_pred             ccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          389 FNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       389 l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      +.||+. |+++.|.| .+.+|++|+.|+.|+||++..   .+.|.+   ++.+|..+|.+++|+++|..++++|.|+.++
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lr---tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLR---TFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEec---Ccceeh---hhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            679999 99999999 899999999999999999984   466666   6778999999999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C-CEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~-~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      +|                     |.++|++... +.  ....++|+.+.  + +.+++|+ |+.|+.||+++++.++.+.
T Consensus       284 lw---------------------DtETG~~~~~-f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd  339 (503)
T KOG0282|consen  284 LW---------------------DTETGQVLSR-FH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD  339 (503)
T ss_pred             ee---------------------ccccceEEEE-Ee--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence            99                     5577887654 32  34577888888  4 6777777 9999999999999999999


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      .|-+.|..+.|-++| .+++.++|++++||+.+..-.++.... +.-...++..+|++++++.=+.|+.|.++.+...- 
T Consensus       340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~-  418 (503)
T KOG0282|consen  340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF-  418 (503)
T ss_pred             hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc-
Confidence            999999999999999 999999999999999988876654433 22245688999999999999999999999976521 


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEee
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~  685 (701)
                       ... ......||.. .+.-..+.|||||++|++| .||.+.+||..+-+.+..++.    ++++.|-|-
T Consensus       419 -r~n-kkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~  485 (503)
T KOG0282|consen  419 -RLN-KKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV  485 (503)
T ss_pred             -ccC-Hhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence             111 1123335541 2556789999999999998 799999999999999888887    788888654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=4.5e-27  Score=216.05  Aligned_cols=287  Identities=12%  Similarity=0.073  Sum_probs=229.6

Q ss_pred             EEEeecCcceeeeEEEEccCCCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc---ccCCCc-eE
Q 005342          321 SLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC---FNDNNQ-SR  396 (701)
Q Consensus       321 ~~l~~h~~~v~~~~l~fspds~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~---l~~h~~-V~  396 (701)
                      .+..+|+.+|.  .++|||-..||..-|=-...+.....           .|.           ++..   +.||.+ ||
T Consensus         8 l~c~ghtrpvv--dl~~s~itp~g~flisa~kd~~pmlr-----------~g~-----------tgdwigtfeghkgavw   63 (334)
T KOG0278|consen    8 LTCHGHTRPVV--DLAFSPITPDGYFLISASKDGKPMLR-----------NGD-----------TGDWIGTFEGHKGAVW   63 (334)
T ss_pred             eEEcCCCccee--EEeccCCCCCceEEEEeccCCCchhc-----------cCC-----------CCCcEEeeeccCccee
Confidence            35678999999  99999987777666543333332211           011           2222   789999 99


Q ss_pred             EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342          397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  476 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  476 (701)
                      +.....|...-|+++.|-+.++||.-    +|....   .+ .|..-|.+++|+.|.++|++|+.+..++|+|++..+  
T Consensus        64 ~~~l~~na~~aasaaadftakvw~a~----tgdelh---sf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~--  133 (334)
T KOG0278|consen   64 SATLNKNATRAASAAADFTAKVWDAV----TGDELH---SF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK--  133 (334)
T ss_pred             eeecCchhhhhhhhcccchhhhhhhh----hhhhhh---hh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCC--
Confidence            99999999999999999999999987    443322   12 377889999999999999999999999999874431  


Q ss_pred             ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEE
Q 005342          477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL  553 (701)
Q Consensus       477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~  553 (701)
                                       ....  .+ .+|.+.|..+-|.  ++.+++.+ |++|++||.+++..++++. .+.+|+++.+
T Consensus       134 -----------------App~--E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEv  192 (334)
T KOG0278|consen  134 -----------------APPK--EI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEV  192 (334)
T ss_pred             -----------------CCch--hh-cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceee
Confidence                             1111  13 4899999999998  77788877 8999999999999999997 6789999999


Q ss_pred             cCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCC
Q 005342          554 LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  633 (701)
Q Consensus       554 spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~  633 (701)
                      +++|.+++-...+.|..||..+..+++.++ -...|.+...+|+...+++|+.|..++.||..+|+.+..     ...+|
T Consensus       193 s~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-----~nkgh  266 (334)
T KOG0278|consen  193 SQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-----YNKGH  266 (334)
T ss_pred             ccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeee-----cccCC
Confidence            999955566677899999999999988877 445689999999999999999999999999999964432     22355


Q ss_pred             CCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCcee
Q 005342          634 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT  671 (701)
Q Consensus       634 ~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~  671 (701)
                      .   ++|.|+.|+|||..-++| .||+|++|....++.-
T Consensus       267 ~---gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  267 F---GPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             C---CceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            4   999999999999999997 8999999999766543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.4e-26  Score=249.00  Aligned_cols=276  Identities=19%  Similarity=0.213  Sum_probs=232.3

Q ss_pred             cCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEE
Q 005342          326 IMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SREST  399 (701)
Q Consensus       326 h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~  399 (701)
                      +...+.  |..|.++     +.|++|.+||..++..+..                            -+.||.+ |++++
T Consensus       207 ~~~~~~--~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~----------------------------~l~GH~g~V~~l~  256 (537)
T KOG0274|consen  207 DDHVVL--CLQLHDGFFKSGSDDSTLHLWDLNNGYLILT----------------------------RLVGHFGGVWGLA  256 (537)
T ss_pred             Ccchhh--hheeecCeEEecCCCceeEEeecccceEEEe----------------------------eccCCCCCceeEE
Confidence            455667  8888866     8999999999998877665                            1458888 99999


Q ss_pred             EcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccc
Q 005342          400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE  479 (701)
Q Consensus       400 ~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~  479 (701)
                      +..-+.++++|+.|.++++||..    +++|..   .+.+|.+.|.++...  +..+++|+.|.+|++|++         
T Consensus       257 ~~~~~~~lvsgS~D~t~rvWd~~----sg~C~~---~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v---------  318 (537)
T KOG0274|consen  257 FPSGGDKLVSGSTDKTERVWDCS----TGECTH---SLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDV---------  318 (537)
T ss_pred             EecCCCEEEEEecCCcEEeEecC----CCcEEE---EecCCCceEEEEEcc--CceEeeccCCceEEEEec---------
Confidence            98888999999999999999988    888887   445789999888765  446788899999999965         


Q ss_pred             cccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCe
Q 005342          480 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDL  558 (701)
Q Consensus       480 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~  558 (701)
                                  +++.++.. + .+|..+|.++..++.++++|+ |+.|++||+.++++++++.+|...|.++.+.+...
T Consensus       319 ------------~n~~~l~l-~-~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~  384 (537)
T KOG0274|consen  319 ------------TNGACLNL-L-RGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENR  384 (537)
T ss_pred             ------------cCcceEEE-e-ccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcce
Confidence                        56666642 3 469999999999999999999 99999999999999999999999999998887348


Q ss_pred             EEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342          559 FAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET  637 (701)
Q Consensus       559 l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~  637 (701)
                      +++|+.|++|++||+++. +++.++.+|.+.+..+.+  .+++|++++.|++|++||...++..  +.+.   +.|.   
T Consensus       385 ~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~--~~~~---~~~~---  454 (537)
T KOG0274|consen  385 LLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECL--RTLE---GRHV---  454 (537)
T ss_pred             EEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCcee--eeec---cCCc---
Confidence            999999999999999999 999999999998866644  6789999999999999999997633  3333   2243   


Q ss_pred             CCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeee
Q 005342          638 TIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       638 ~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l  674 (701)
                      ..|..+++. +...++++.||++++||++++++.+.+
T Consensus       455 ~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  455 GGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ccEEEeecC-cceEEEEecCCeeEEEecccCchhhhh
Confidence            788888877 445555579999999999999998866

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1e-26  Score=238.33  Aligned_cols=248  Identities=16%  Similarity=0.225  Sum_probs=212.5

Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      ..|.. |.++.+||....++++-.+|.|.||+.+    +....+   .+.-...+|.+..|-+--+++++|+.|..|+||
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnye----tqtmVk---sfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYE----TQTMVK---SFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF   82 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEecc----cceeee---eeeecccchhhheeeeccceEEEecCCceEEEE
Confidence            34666 9999999999999999999999999998    333222   222246789999999999999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC-cEEEEecCC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANP  544 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~  544 (701)
                      +.                     .+++.+.. + ..|...|.+++.+  ..++++++ |-.|++||.+.+ .+.++|.||
T Consensus        83 ny---------------------nt~ekV~~-F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH  139 (794)
T KOG0276|consen   83 NY---------------------NTGEKVKT-F-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH  139 (794)
T ss_pred             ec---------------------ccceeeEE-e-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc
Confidence            66                     44453432 3 4799999999999  78999999 899999999764 688999999


Q ss_pred             CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCCee
Q 005342          545 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       545 ~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp--dg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      ...|++++|.|..  .+|+++-|++|++|.+.+..+..++.||...|+++.+-|  |.++|+||++|.+|+|||..+.. 
T Consensus       140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-  218 (794)
T KOG0276|consen  140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-  218 (794)
T ss_pred             ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-
Confidence            9999999999988  999999999999999999999999999999999999987  44699999999999999999943 


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                       |...+.    ||.   ..|..+.|+|.-..+++| .||+++||+..|-++.+++.-
T Consensus       219 -CV~TLe----GHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~  267 (794)
T KOG0276|consen  219 -CVQTLE----GHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY  267 (794)
T ss_pred             -HHHHhh----ccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc
Confidence             444444    887   999999999999999997 899999999988776666553

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=3.8e-26  Score=221.01  Aligned_cols=259  Identities=14%  Similarity=0.150  Sum_probs=207.6

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .|..|.. |.+++.+|+.++++||+.|....+|+..    ++....   ...+|...|+++.||.||.+|++|+.+|.|.
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~----~ge~~~---eltgHKDSVt~~~FshdgtlLATGdmsG~v~  131 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIS----TGEFAG---ELTGHKDSVTCCSFSHDGTLLATGDMSGKVL  131 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEcc----CCccee---EecCCCCceEEEEEccCceEEEecCCCccEE
Confidence            3678999 9999999999999999999999999998    554222   3457999999999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN  543 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~  543 (701)
                      ||+.                     .++..... +. ..-..+.-+.|+  +..|+.|+ ||.+.+|.+.++...+.+.|
T Consensus       132 v~~~---------------------stg~~~~~-~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G  188 (399)
T KOG0296|consen  132 VFKV---------------------STGGEQWK-LD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG  188 (399)
T ss_pred             EEEc---------------------ccCceEEE-ee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence            9965                     34442221 11 234566677777  88899999 99999999999888999999


Q ss_pred             CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC--------------------------------------
Q 005342          544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--------------------------------------  584 (701)
Q Consensus       544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~--------------------------------------  584 (701)
                      |..++++=.|.|+| .+++|..||+|++||+.+++++.++.+                                      
T Consensus       189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv  268 (399)
T KOG0296|consen  189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV  268 (399)
T ss_pred             CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEE
Confidence            99999999999999 999999999999999999887665541                                      


Q ss_pred             -------------CCCCeEEEE---EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342          585 -------------HQNRITCLA---YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       585 -------------h~~~V~~v~---~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd  648 (701)
                                   +...+.++.   |+..-++.|+|+-||+|.|||+.......      + ..|.   .+|+.+.|-+ 
T Consensus       269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~------~-c~he---~~V~~l~w~~-  337 (399)
T KOG0296|consen  269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH------I-CEHE---DGVTKLKWLN-  337 (399)
T ss_pred             EecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe------e-ccCC---CceEEEEEcC-
Confidence                         111122232   33344577889999999999999854221      1 1333   8899999999 


Q ss_pred             CCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342          649 QIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV  687 (701)
Q Consensus       649 g~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~  687 (701)
                      ..+|+++ .||.|+.||.++|+++.++.|    |..++++|...
T Consensus       338 t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~  381 (399)
T KOG0296|consen  338 TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKR  381 (399)
T ss_pred             cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCc
Confidence            6677764 899999999999999999999    88999988543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=7.8e-26  Score=209.48  Aligned_cols=275  Identities=11%  Similarity=0.125  Sum_probs=220.5

Q ss_pred             EEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       321 ~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      +.+++|...+.  +++|+-+       +.|+++++|++..++....                           ...++|.
T Consensus        14 r~~~~~~~~v~--Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~---------------------------~~~~gh~   64 (313)
T KOG1407|consen   14 RELQGHVQKVH--SVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE---------------------------LVYRGHT   64 (313)
T ss_pred             HHhhhhhhcce--EEEEcccCceeeecccCCceEEEEecchhhhhh---------------------------hcccCCC
Confidence            34577888888  9999988       8999999999988743332                           1235788


Q ss_pred             c-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342          394 Q-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ  471 (701)
Q Consensus       394 ~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  471 (701)
                      + |-.++|+| ....+++++.|.+|++||..    .+++.....    ....=..+.|+|+|.++++++.|..|...|. 
T Consensus        65 ~svdql~w~~~~~d~~atas~dk~ir~wd~r----~~k~~~~i~----~~~eni~i~wsp~g~~~~~~~kdD~it~id~-  135 (313)
T KOG1407|consen   65 DSVDQLCWDPKHPDLFATASGDKTIRIWDIR----SGKCTARIE----TKGENINITWSPDGEYIAVGNKDDRITFIDA-  135 (313)
T ss_pred             cchhhheeCCCCCcceEEecCCceEEEEEec----cCcEEEEee----ccCcceEEEEcCCCCEEEEecCcccEEEEEe-
Confidence            7 88999986 56789999999999999998    555544221    2334456789999999999999999998855 


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA  548 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i  548 (701)
                                          .+.+.+..   ......+..++|+  +++++..+ .|.|.|......+++..++.|+...
T Consensus       136 --------------------r~~~~~~~---~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC  192 (313)
T KOG1407|consen  136 --------------------RTYKIVNE---EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC  192 (313)
T ss_pred             --------------------cccceeeh---hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce
Confidence                                33333321   2345567788888  66655555 6999999999999999999999999


Q ss_pred             EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeee
Q 005342          549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH  627 (701)
Q Consensus       549 ~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~  627 (701)
                      .||.|+|+| ++|+|+.|..+.+||+...-+++.+.-+.-+|..+.||.||++||+||+|..|-|=++++|.++...+-.
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE  272 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc
Confidence            999999999 9999999999999999999889999989999999999999999999999999999999999744322212


Q ss_pred             eccCCCCCCCCCeEEEEEcCCCCEEEE-Ee---c------CeEEEEECC
Q 005342          628 SFQTGLVPETTIVNHIQFHPDQIHLLS-IH---E------GQIDVYEAP  666 (701)
Q Consensus       628 ~~~~~~~~~~~~v~~v~~spdg~~l~s-g~---D------g~I~iwd~~  666 (701)
                                ++...|+|+|...+||. ++   +      |++++|-+.
T Consensus       273 ----------~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  273 ----------GPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             ----------CCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence                      78899999999999986 32   2      467776553

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=3.4e-27  Score=231.43  Aligned_cols=282  Identities=14%  Similarity=0.123  Sum_probs=228.6

Q ss_pred             cCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCC
Q 005342          314 MDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDS  386 (701)
Q Consensus       314 ~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~  386 (701)
                      .-+.+....+..|.+.+.  .+.|-++       +.|..|++|++..+++-..                           
T Consensus       162 ~lpS~~~~~ld~h~gev~--~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~---------------------------  212 (459)
T KOG0288|consen  162 TLPSRALFVLDAHEGEVH--DVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI---------------------------  212 (459)
T ss_pred             ccchhhhhhhhccccccc--eeEEccCcchhhhcchhhhhhhhhcccchhhhh---------------------------
Confidence            345677778899999999  9999988       8999999999987763222                           


Q ss_pred             ccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342          387 SCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH  465 (701)
Q Consensus       387 ~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i  465 (701)
                      ..|.|-.+ |.++.|.++++.+++++.|+.+++|+++    ..+...   ++.+|.+.|+++.|......+++|+.|.++
T Consensus       213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd----~~r~~~---TLsGHtdkVt~ak~~~~~~~vVsgs~DRti  285 (459)
T KOG0288|consen  213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD----SLRLRH---TLSGHTDKVTAAKFKLSHSRVVSGSADRTI  285 (459)
T ss_pred             hhhhccCCCcceeeecCCCceEEeecCCCceeeeecc----chhhhh---hhcccccceeeehhhccccceeeccccchh
Confidence            12344455 9999999999999999999999999998    554444   667899999999999888779999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      +.||+                     ..+.+....+   ....+.++..++..+++|- |++|++||+++..+....+.+
T Consensus       286 K~WDl---------------------~k~~C~kt~l---~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g  341 (459)
T KOG0288|consen  286 KLWDL---------------------QKAYCSKTVL---PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLG  341 (459)
T ss_pred             hhhhh---------------------hhhheecccc---ccccccceEecceeeeecccccceEEEeccCCceeeEeecC
Confidence            99976                     3344443222   2345566666666778888 999999999999999998855


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC----CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      . .|+++..+++| .+.+.+.|.++.+.|+++.+..+.+..    .....+.+.|||++.|+++||.||.|+||++.+|+
T Consensus       342 g-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK  420 (459)
T KOG0288|consen  342 G-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK  420 (459)
T ss_pred             c-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCce
Confidence            4 89999999999 888889999999999999998887764    12358999999999999999999999999999987


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEE
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY  663 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iw  663 (701)
                      ..  +.+. .  .+.+  ..|++++|+|.|..++++ .++.+.+|
T Consensus       421 lE--~~l~-~--s~s~--~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  421 LE--KVLS-L--STSN--AAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EE--EEec-c--CCCC--cceEEEEEcCCCchhhcccCCcceEec
Confidence            43  3333 2  2221  479999999999999885 78889998

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=2.8e-26  Score=216.86  Aligned_cols=298  Identities=13%  Similarity=0.145  Sum_probs=226.9

Q ss_pred             EEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc
Q 005342          322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ  394 (701)
Q Consensus       322 ~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~  394 (701)
                      .+..|...+.  +.+||||       +.|..|+|.|++..-.... ...+..+.+...|+          ....|..|..
T Consensus       107 ylt~HK~~cR--~aafs~DG~lvATGsaD~SIKildvermlaks~-~~em~~~~~qa~hP----------vIRTlYDH~d  173 (430)
T KOG0640|consen  107 YLTSHKSPCR--AAAFSPDGSLVATGSADASIKILDVERMLAKSK-PKEMISGDTQARHP----------VIRTLYDHVD  173 (430)
T ss_pred             EEeeccccee--eeeeCCCCcEEEccCCcceEEEeehhhhhhhcc-hhhhccCCcccCCc----------eEeehhhccC
Confidence            4678999999  9999999       8999999999973211100 00011112222333          2344889999


Q ss_pred             -eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          395 -SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       395 -V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                       |+++.|+|....|++|+.|++|+++|+..   +...+.+.  .-....+|.++.|+|.|.++++|.....+++||+++.
T Consensus       174 evn~l~FHPre~ILiS~srD~tvKlFDfsK---~saKrA~K--~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~  248 (430)
T KOG0640|consen  174 EVNDLDFHPRETILISGSRDNTVKLFDFSK---TSAKRAFK--VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY  248 (430)
T ss_pred             cccceeecchhheEEeccCCCeEEEEeccc---HHHHHHHH--HhhccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence             99999999999999999999999999973   11111111  1124678999999999999999999999999977543


Q ss_pred             CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec-CC-CCCe
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NP-PPIA  548 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~-~~-~~~i  548 (701)
                      ++                    .+......+|.+.|+++.++  |++.++++ ||.|++||--+++++.++. .| ...|
T Consensus       249 Qc--------------------fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsev  308 (430)
T KOG0640|consen  249 QC--------------------FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEV  308 (430)
T ss_pred             eE--------------------eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCcee
Confidence            22                    11111224789999999999  99999999 9999999988999998885 34 5679


Q ss_pred             EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC--CC---CeEEEEEecCCCEEEEEeC-CCeEEEEECCCCeee
Q 005342          549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--QN---RITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKL  621 (701)
Q Consensus       549 ~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h--~~---~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~g~~~  621 (701)
                      ++..|..+| ++++.+.|..+++|.+.++..+.++.|-  ++   .-+...|+....|++.-.+ .+.++-||.+++.+.
T Consensus       309 cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~  388 (430)
T KOG0640|consen  309 CSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV  388 (430)
T ss_pred             eeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence            999999999 9999999999999999999999998863  11   2345577777778776544 568999999997533


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      ..     +.-||.   +.+..+.-||.+.-++++ +|..+++|--
T Consensus       389 ~l-----~slgHn---~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  389 AL-----LSLGHN---GAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             hh-----cccCCC---CCceEEEeCCCCCceeeecccceeeeeee
Confidence            21     334666   999999999999999985 8899999953

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=6.3e-27  Score=215.07  Aligned_cols=247  Identities=15%  Similarity=0.224  Sum_probs=213.1

Q ss_pred             cccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCC
Q 005342          310 KFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDD  382 (701)
Q Consensus       310 ~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~  382 (701)
                      .+-+.++|.-+-++.+|.+.||  ....+.+       +.|=+-++||.-+|..+..+                      
T Consensus        42 mlr~g~tgdwigtfeghkgavw--~~~l~~na~~aasaaadftakvw~a~tgdelhsf----------------------   97 (334)
T KOG0278|consen   42 MLRNGDTGDWIGTFEGHKGAVW--SATLNKNATRAASAAADFTAKVWDAVTGDELHSF----------------------   97 (334)
T ss_pred             hhccCCCCCcEEeeeccCccee--eeecCchhhhhhhhcccchhhhhhhhhhhhhhhh----------------------
Confidence            3445679999999999999999  7777777       78999999999999888773                      


Q ss_pred             CCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC
Q 005342          383 SNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ  461 (701)
Q Consensus       383 ~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~  461 (701)
                              .|.. |.+++|+.|.++|++|+.++.++++|++....+-   .   ...+|.+.|..+.|....+.|++.+.
T Consensus        98 --------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App---~---E~~ghtg~Ir~v~wc~eD~~iLSSad  163 (334)
T KOG0278|consen   98 --------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP---K---EISGHTGGIRTVLWCHEDKCILSSAD  163 (334)
T ss_pred             --------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc---h---hhcCCCCcceeEEEeccCceEEeecc
Confidence                    6778 9999999999999999999999999998432221   1   33579999999999999999999999


Q ss_pred             CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEE
Q 005342          462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLA  539 (701)
Q Consensus       462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~  539 (701)
                      |++|++||.                     .++..+.. +  ....+|+++.++  |+++.++..+.|.+||..+...++
T Consensus       164 d~tVRLWD~---------------------rTgt~v~s-L--~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK  219 (334)
T KOG0278|consen  164 DKTVRLWDH---------------------RTGTEVQS-L--EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK  219 (334)
T ss_pred             CCceEEEEe---------------------ccCcEEEE-E--ecCCCCcceeeccCCCEEEEecCceeEEecccccccee
Confidence            999999965                     56665543 2  245689999999  666666668999999999999998


Q ss_pred             EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee-cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      .+. .+..|.+.+.+|+. .+++|++|..++.||..+++.+..+ +||.++|.|+.|+|||..-++||.||+|++|.+..
T Consensus       220 s~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  220 SYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             ecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence            887 56678999999999 9999999999999999999999886 89999999999999999999999999999999887


Q ss_pred             Ce
Q 005342          618 WK  619 (701)
Q Consensus       618 g~  619 (701)
                      ++
T Consensus       299 ~~  300 (334)
T KOG0278|consen  299 GK  300 (334)
T ss_pred             CC
Confidence            64

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=3.5e-25  Score=239.82  Aligned_cols=268  Identities=11%  Similarity=0.082  Sum_probs=202.3

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEecccc------CCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcEEE
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLI------NEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKL  467 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~------~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~v  467 (701)
                      |+....++|+..+++++.+.....|+....      ...|+...-.....+|.+.|.+++|+| ++++|++|+.||+|++
T Consensus        23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI  102 (493)
T PTZ00421         23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG  102 (493)
T ss_pred             cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence            666777888888888888888888876410      001110000001347899999999999 8899999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFAN  543 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~  543 (701)
                      ||+......              ......+.. + .+|...|.+++|+   +++|++++ |+.|++||+++++.+..+.+
T Consensus       103 Wdi~~~~~~--------------~~~~~~l~~-L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~  166 (493)
T PTZ00421        103 WGIPEEGLT--------------QNISDPIVH-L-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC  166 (493)
T ss_pred             EecCCCccc--------------cccCcceEE-e-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence            988543110              000111111 2 4799999999999   36899999 99999999999999999999


Q ss_pred             CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCC-eEEEEEecCCCEEEEEe----CCCeEEEEECCC
Q 005342          544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSG----ADAQLCVWDAVG  617 (701)
Q Consensus       544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~-V~~v~~spdg~~l~s~s----~D~~I~vwd~~~  617 (701)
                      |...|.+++|+|+| ++++|+.|+.|++||+++++.+..+.+|.+. +..+.|.|++..+++++    .|+.|++||+++
T Consensus       167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            99999999999999 9999999999999999999999999999764 45788999888777654    479999999987


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCceeeeeee-----eeEEEEEee
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQI  685 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~  685 (701)
                      ..    .++.....+..   ..+....|+|++++++++  .|+.|++||+.+++.+.....     +.+++|.|.
T Consensus       247 ~~----~p~~~~~~d~~---~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        247 MA----SPYSTVDLDQS---SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             CC----CceeEeccCCC---CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            53    22221211222   556677899999998874  499999999999988776543     667777554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=2.4e-25  Score=206.84  Aligned_cols=285  Identities=14%  Similarity=0.128  Sum_probs=222.5

Q ss_pred             EEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc
Q 005342          322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ  394 (701)
Q Consensus       322 ~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~  394 (701)
                      .+++|..+++  .+.|+.+       +.|.+..||-..+|+.+-+                             +.||.+
T Consensus         5 ~l~GHERplT--qiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt-----------------------------y~GHtG   53 (327)
T KOG0643|consen    5 LLQGHERPLT--QIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT-----------------------------YDGHTG   53 (327)
T ss_pred             ccccCccccc--eEEecCCCcEEEEecCCCCceEEEecCCceeee-----------------------------ecCCCc
Confidence            3688999999  9999998       8999999998888877766                             258888


Q ss_pred             -eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-----CcEEEE
Q 005342          395 -SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-----ATHKLW  468 (701)
Q Consensus       395 -V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-----g~i~vw  468 (701)
                       ||++...-+.+.+++|+.|.++++||+.    +|++....-    ...+|..+.|+++|++++.+..+     +.|.++
T Consensus        54 avW~~Did~~s~~liTGSAD~t~kLWDv~----tGk~la~~k----~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f  125 (327)
T KOG0643|consen   54 AVWCCDIDWDSKHLITGSADQTAKLWDVE----TGKQLATWK----TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVF  125 (327)
T ss_pred             eEEEEEecCCcceeeeccccceeEEEEcC----CCcEEEEee----cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence             9999999999999999999999999998    776655221    35789999999999988777653     678888


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc-EEEEecCC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-TLATFANP  544 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~-~~~~~~~~  544 (701)
                      |++....              +..+.....+ + ..+...++.+-|+  +++|++|. ||.|..||+++|+ .+.....|
T Consensus       126 di~~~~~--------------~~~s~ep~~k-I-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h  189 (327)
T KOG0643|consen  126 DIRDDSS--------------DIDSEEPYLK-I-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH  189 (327)
T ss_pred             EccCChh--------------hhcccCceEE-e-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh
Confidence            7753221              2223332222 2 2466889999999  99999999 9999999999985 56666778


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCe--EEEEECCCCee-
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ--LCVWDAVGWKK-  620 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~--I~vwd~~~g~~-  620 (701)
                      ...|+.+.++||. ++++|+.|.+-++||..+.++++++. ...+|++.+++|....++.|+....  |.-=+.+.|+- 
T Consensus       190 ~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFE  268 (327)
T KOG0643|consen  190 SSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFE  268 (327)
T ss_pred             ccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchh
Confidence            9999999999999 99999999999999999999999988 5679999999998777776654322  22222223311 


Q ss_pred             ------eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          621 ------LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       621 ------~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                            +..+.+..+. ||-   ++|++++|+|+|+..++| .||.|++.-..
T Consensus       269 ArFyh~i~eEEigrvk-GHF---GPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  269 ARFYHLIFEEEIGRVK-GHF---GPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             hhHHHHHHHHHhcccc-ccc---cCcceeEECCCCcccccCCCCceEEEEEec
Confidence                  1112233222 555   999999999999999996 89999997654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.5e-24  Score=203.92  Aligned_cols=266  Identities=14%  Similarity=0.095  Sum_probs=207.5

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC--CCcE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ--TATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~--dg~i  465 (701)
                      +..-.. |+++.|+++|..+++++.|.++++||..    .+....   ....+.-.|..+.|......++.++.  |.+|
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~----~g~~~~---ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL----SGKQVK---TINSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC----CCceee---EeecccccccEEEEecCCceEEEccCCCCCce
Confidence            444444 9999999999999999999999999998    454433   11234567888899888887887777  7888


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      +..+                     ..+++.+.. + .||...|.+++.+  ++.+++++ |++|++||++..++...+.
T Consensus        83 ryLs---------------------l~dNkylRY-F-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~  139 (311)
T KOG1446|consen   83 RYLS---------------------LHDNKYLRY-F-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN  139 (311)
T ss_pred             EEEE---------------------eecCceEEE-c-CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe
Confidence            8874                     466676642 3 6999999999999  88999999 9999999999887776665


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--ceEEeec---CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342          543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLK---GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~--~~~~~l~---~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~  616 (701)
                      ....  ..++|+|.| ++|++.....|++||++..  .+-.++.   +-....+.+.|||||++++.+...+.+++.|.-
T Consensus       140 ~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf  217 (311)
T KOG1446|consen  140 LSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF  217 (311)
T ss_pred             cCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence            3333  458999999 9999988889999999864  2333333   335678999999999999999999999999999


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-----eeEEEEEeeEEeee
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQIVVKFH  690 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~~~f~  690 (701)
                      +|......... -..+     .--...+|+||++++++| +||+|.+|++++|..+..+.+     ++.+.|+|....|.
T Consensus       218 ~G~~~~tfs~~-~~~~-----~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~  291 (311)
T KOG1446|consen  218 DGTVKSTFSGY-PNAG-----NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV  291 (311)
T ss_pred             CCcEeeeEeec-cCCC-----CcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeee
Confidence            99755433333 1111     222678899999999998 789999999999999999887     66667777666555


Q ss_pred             ec
Q 005342          691 SF  692 (701)
Q Consensus       691 ~~  692 (701)
                      +.
T Consensus       292 sa  293 (311)
T KOG1446|consen  292 SA  293 (311)
T ss_pred             ec
Confidence            44

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4e-25  Score=219.93  Aligned_cols=280  Identities=15%  Similarity=0.203  Sum_probs=218.0

Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCcee-----------EeecCCCCCCCCEEEEEEecCCCEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR-----------TLLLPDNSFGGRVVRLIYSHSGDFLV  457 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~-----------~l~~~~~~~~~~v~~l~~spdg~~l~  457 (701)
                      ..|.. |.+++++||+++.++++.+++|.-|++..........           .+..+...|...+.+++.|+||+||+
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla  218 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA  218 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence            46666 9999999999999999999999999997433221011           01111126788999999999999999


Q ss_pred             EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC
Q 005342          458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET  534 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~  534 (701)
                      +|+.|..|.||+.                     ++.+.+.. + .+|.+.|.+++|-  -+.+++++ |+.|++|+++.
T Consensus       219 tgg~d~~v~Iw~~---------------------~t~ehv~~-~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  219 TGGRDRHVQIWDC---------------------DTLEHVKV-F-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             ecCCCceEEEecC---------------------cccchhhc-c-cccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence            9999999999955                     45553332 2 5899999999999  45677777 99999999999


Q ss_pred             CcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342          535 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW  613 (701)
Q Consensus       535 ~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vw  613 (701)
                      ...+.++.+|++.|..+....-+ .+-+|..|+++++|++.. +..-.+.+|.+.+-|++|-. ...+++||++|.|.+|
T Consensus       276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLW  353 (479)
T KOG0299|consen  276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALW  353 (479)
T ss_pred             hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEe
Confidence            99999999999999999888888 788888999999999954 34456788999999999964 4578899999999999


Q ss_pred             ECCCCeeeeeeeee-eccCCCC--CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC----ceeeeeee---eeEEEE
Q 005342          614 DAVGWKKLCSKFLH-SFQTGLV--PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL----NHTSQVLL---ISHIMF  682 (701)
Q Consensus       614 d~~~g~~~~~~~l~-~~~~~~~--~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g----~~~~~l~~---i~~~~f  682 (701)
                      ++...++++...+. .+...+.  .+..+|++++..|...++|+| .+|.|++|.+..|    +++..++.   |++++|
T Consensus       354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f  433 (479)
T KOG0299|consen  354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAF  433 (479)
T ss_pred             eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEE
Confidence            99997766654443 1111110  011389999999999999997 8999999999887    34444443   899998


Q ss_pred             EeeEEeeeecceEEEEeC
Q 005342          683 VQIVVKFHSFKFFYVAVG  700 (701)
Q Consensus       683 s~~~~~f~~~~~~~~~~~  700 (701)
                      +      .+-+++++++|
T Consensus       434 ~------~sgk~ivagiG  445 (479)
T KOG0299|consen  434 S------NSGKRIVAGIG  445 (479)
T ss_pred             c------cCCCEEEEecc
Confidence            7      44557777776

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.9e-25  Score=206.09  Aligned_cols=262  Identities=12%  Similarity=0.108  Sum_probs=202.1

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCC-CeEEEEcCCCcEEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDA-DSAVCAKSLEKSVNL  419 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg-~~l~s~s~d~~v~iw  419 (701)
                      ...|++.|-++..+..+...          .                .+.-.+.+..++|+++. ..+++++.||++++|
T Consensus        35 ~G~G~L~ile~~~~~gi~e~----------~----------------s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~   88 (311)
T KOG0277|consen   35 AGNGRLFILEVTDPKGIQEC----------Q----------------SYDTEDGLFDVAWSENHENQVIAASGDGSLRLF   88 (311)
T ss_pred             ccCceEEEEecCCCCCeEEE----------E----------------eeecccceeEeeecCCCcceEEEEecCceEEEe
Confidence            56788888888655555441          0                01112227789999864 578889999999999


Q ss_pred             eccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342          420 KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT  498 (701)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~  498 (701)
                      |+...   ..  .+. .++.|...|.++.|++-. +.++++|-|++|++|+.                     ..+.-+.
T Consensus        89 d~~~~---s~--Pi~-~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~---------------------~r~~Sv~  141 (311)
T KOG0277|consen   89 DLTMP---SK--PIH-KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP---------------------NRPNSVQ  141 (311)
T ss_pred             ccCCC---Cc--chh-HHHhhhhheEEeccccccceeEEeeccCCceEeecC---------------------CCCcceE
Confidence            97521   11  111 234689999999999854 45677788999999965                     3333222


Q ss_pred             ecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEe
Q 005342          499 NDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHC  572 (701)
Q Consensus       499 ~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd  572 (701)
                      + + .+|...|...+|+   ++.+++++ |+.+++||++.......+..|...|.++.|+.-.  .+++|+.|+.|+.||
T Consensus       142 T-f-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD  219 (311)
T KOG0277|consen  142 T-F-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD  219 (311)
T ss_pred             e-e-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence            1 3 5899999999999   88999999 9999999998654444488899999999999877  999999999999999


Q ss_pred             CCCC-ceEEeecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-C
Q 005342          573 PCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-Q  649 (701)
Q Consensus       573 ~~~~-~~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-g  649 (701)
                      +++. .++.++.||.-.|..+.|||. ...|||+|.|-+++|||...+.    ..++ ...+|+   .-|..+.||+- +
T Consensus       220 ir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d----s~~e-~~~~Ht---EFv~g~Dws~~~~  291 (311)
T KOG0277|consen  220 IRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD----SAIE-TVDHHT---EFVCGLDWSLFDP  291 (311)
T ss_pred             hhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch----hhhh-hhhccc---eEEeccccccccC
Confidence            9874 568889999999999999995 5689999999999999998753    2233 333676   78899999984 6


Q ss_pred             CEEEE-EecCeEEEEEC
Q 005342          650 IHLLS-IHEGQIDVYEA  665 (701)
Q Consensus       650 ~~l~s-g~Dg~I~iwd~  665 (701)
                      .++|+ |.|+.++||+.
T Consensus       292 ~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  292 GQVASTGWDELLYVWNP  308 (311)
T ss_pred             ceeeecccccceeeecc
Confidence            67776 68999999985

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.1e-25  Score=236.83  Aligned_cols=245  Identities=16%  Similarity=0.193  Sum_probs=190.0

Q ss_pred             cc-CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEecccc---------------------------CCC------------
Q 005342          389 FN-DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLI---------------------------NEP------------  427 (701)
Q Consensus       389 l~-~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~---------------------------~~~------------  427 (701)
                      +. .|.+ ||++.||+||+|||+||.|+.|+||.+.+.                           ...            
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            44 8999 999999999999999999999999998750                           000            


Q ss_pred             ---CceeEee-----------cCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCC
Q 005342          428 ---SECRTLL-----------LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS  493 (701)
Q Consensus       428 ---~~~~~l~-----------~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~  493 (701)
                         ..+..+.           ..+.+|.+.|.++.||.++ +|++++.|.+|++|+                     +..
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh---------------------~~~  399 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWH---------------------PGR  399 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeec---------------------CCC
Confidence               0000000           0112899999999999876 689999999999994                     455


Q ss_pred             CeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcE
Q 005342          494 KLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSI  568 (701)
Q Consensus       494 ~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I  568 (701)
                      ..++.. |  .|...|+|++|+   ++++++|+ ||.|+||++...+.+.-.. -..-|+++++.||| ..++|+.+|.+
T Consensus       400 ~~CL~~-F--~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C  475 (712)
T KOG0283|consen  400 KECLKV-F--SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYC  475 (712)
T ss_pred             cceeeE-E--ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEE
Confidence            565543 3  499999999999   88999999 9999999997776665544 45789999999999 99999999999


Q ss_pred             EEEeCCCCceEEeecC---------CCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCC
Q 005342          569 LVHCPCTKKTKAKLKG---------HQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT  638 (701)
Q Consensus       569 ~iwd~~~~~~~~~l~~---------h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~  638 (701)
                      ++|+....+....+.-         |. .|+.+.|.|. ...++..+.|..|+|+|.+...     .+..+.+.+..  .
T Consensus       476 ~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-----lv~KfKG~~n~--~  547 (712)
T KOG0283|consen  476 RFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-----LVHKFKGFRNT--S  547 (712)
T ss_pred             EEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh-----hhhhhcccccC--C
Confidence            9999887766544321         22 7999999984 4457778889999999997743     22224333321  4


Q ss_pred             CeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          639 IVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       639 ~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      .-....|+.||++|+++ +|..|+||+...
T Consensus       548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  548 SQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             cceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            45678999999999996 899999999843

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=8.1e-25  Score=202.76  Aligned_cols=258  Identities=14%  Similarity=0.159  Sum_probs=211.4

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC-CCEEEEEECCCcEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHK  466 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~i~  466 (701)
                      +.+|.. |.+++|+-+|..|++|+.|+++.+|++.    ..+... .....+|.+.|..++|+|. ...+++++.|..|+
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e----~~r~~~-~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLE----RDRFRK-ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEec----chhhhh-hhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            457888 9999999999999999999999999997    332211 2344578889999999875 56889999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN  543 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~  543 (701)
                      +||.                     .++++....   ...+.-..++|+  |+++++++ |..|.+.|.++.+.....+ 
T Consensus        91 ~wd~---------------------r~~k~~~~i---~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-  145 (313)
T KOG1407|consen   91 IWDI---------------------RSGKCTARI---ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-  145 (313)
T ss_pred             EEEe---------------------ccCcEEEEe---eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-
Confidence            9965                     444543321   122233356676  99999999 9999999999988877765 


Q ss_pred             CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                      ....+.-++|+.++ +++.....|.|.|.....-+++..++.|.....|+.|+|+|+++|+|+.|..+.+||+..  ++|
T Consensus       146 ~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E--LiC  223 (313)
T KOG1407|consen  146 FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE--LIC  223 (313)
T ss_pred             ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH--hhh
Confidence            55667888999777 666666779999999999999999999999999999999999999999999999999987  666


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~  685 (701)
                      ...+.    -+.   -+|..++||.||++||++ .|..|-|=++++|..+..++.   -..++|.|-
T Consensus       224 ~R~is----Rld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk  283 (313)
T KOG1407|consen  224 ERCIS----RLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK  283 (313)
T ss_pred             heeec----ccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC
Confidence            66665    222   889999999999999996 899999999999999999887   667777664

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=6.7e-26  Score=218.78  Aligned_cols=277  Identities=13%  Similarity=0.137  Sum_probs=215.2

Q ss_pred             EEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342          321 SLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN  392 (701)
Q Consensus       321 ~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h  392 (701)
                      ..|.+|.+.|.  |++=+|.        +.||.|+|||+..-.|+..          +                   ..|
T Consensus        60 ~~L~gHrdGV~--~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~----------f-------------------~AH  108 (433)
T KOG0268|consen   60 GSLDGHRDGVS--CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT----------F-------------------KAH  108 (433)
T ss_pred             hhccccccccc--hhhcCcchhhhhhccccCceEEEEehhhhhhhhe----------e-------------------ecc
Confidence            45689999999  9999998        8999999999998888777          2                   467


Q ss_pred             Cc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342          393 NQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ  471 (701)
Q Consensus       393 ~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  471 (701)
                      .+ |..++++.  ..+++++.|.+|+.|.++    ......+.     ....+..+.-+..+..+++||.  .|.|||.+
T Consensus       109 ~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~----~~p~~til-----g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~  175 (433)
T KOG0268|consen  109 EGLVRGICVTQ--TSFFTVGDDKTVKQWKID----GPPLHTIL-----GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQ  175 (433)
T ss_pred             cCceeeEEecc--cceEEecCCcceeeeecc----CCcceeee-----ccccccccccccccccccccCc--eeeecccc
Confidence            77 88899987  789999999999999986    22112211     2455666766666777888876  48888763


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPI  547 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~  547 (701)
                      ..                     ..++. +.. ....|.++.|+   -..|++|. |+.|.+||++++.+++.+. ....
T Consensus       176 R~---------------------~Pv~s-msw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mR  231 (433)
T KOG0268|consen  176 RD---------------------NPVSS-MSW-GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMR  231 (433)
T ss_pred             cC---------------------Cccce-eec-CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eecc
Confidence            32                     21111 111 23568888998   55677776 9999999999999888775 4555


Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342          548 ATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF  625 (701)
Q Consensus       548 i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~  625 (701)
                      -+.|+|+|.+ .+.+|++|..++.||++.. .++..+.+|.+.|.+++|||.|+-++|||.|.+|+||.+..+.-   ..
T Consensus       232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S---Rd  308 (433)
T KOG0268|consen  232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS---RD  308 (433)
T ss_pred             ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc---hh
Confidence            6889999977 8999999999999999874 56788899999999999999999999999999999999998742   11


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeee
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ  673 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~  673 (701)
                      +. ...-.    ..|.+|.||.|.+++++| +|+.|++|.....+.+..
T Consensus       309 iY-htkRM----q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv  352 (433)
T KOG0268|consen  309 IY-HTKRM----QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV  352 (433)
T ss_pred             hh-hHhhh----heeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence            11 00011    568999999999999997 899999998865554443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=7.5e-26  Score=222.00  Aligned_cols=263  Identities=14%  Similarity=0.126  Sum_probs=216.5

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +..|.. |..+.|-++...|++|+.|..|++|++.    .+++.. .-...+..++|+++.|.++++++++++.|+.+++
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~----~~k~~~-~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVL----GEKSEL-ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL  245 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcc----cchhhh-hhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence            567888 9999999999999999999999999997    444222 2234566788999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCE-EEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~-l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      |++                     .+.+++.. + .+|...|+++.|. ++. +++|+ |.+|+.||+....+.+++- .
T Consensus       246 Wnv---------------------d~~r~~~T-L-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~  301 (459)
T KOG0288|consen  246 WNV---------------------DSLRLRHT-L-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-P  301 (459)
T ss_pred             eec---------------------cchhhhhh-h-cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-c
Confidence            965                     44554433 3 4799999999999 444 89999 9999999999988887765 4


Q ss_pred             CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          545 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       545 ~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      .+.+..|+.++. .+++|..|++|+.||+++.........+. .|+++..+++|..|.+++.|.++.+.|+++.+.....
T Consensus       302 ~S~cnDI~~~~~-~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~  379 (459)
T KOG0288|consen  302 GSQCNDIVCSIS-DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF  379 (459)
T ss_pred             cccccceEecce-eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence            555666776632 79999999999999999999999888774 8999999999999999999999999999996543322


Q ss_pred             eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee------eeEEEEEeeEE
Q 005342          625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL------ISHIMFVQIVV  687 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~------i~~~~fs~~~~  687 (701)
                      .-..+..+     ...+.+.|||++.|+++| .||.|+||++.+|++...+..      |++++|+|..-
T Consensus       380 sA~g~k~a-----sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~  444 (459)
T KOG0288|consen  380 SAEGFKCA-----SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS  444 (459)
T ss_pred             eccccccc-----cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence            22212222     458999999999999997 899999999999999888876      99999988543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.4e-24  Score=214.50  Aligned_cols=294  Identities=13%  Similarity=0.101  Sum_probs=223.7

Q ss_pred             eEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc-cC
Q 005342          320 LSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF-ND  391 (701)
Q Consensus       320 ~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l-~~  391 (701)
                      ...+..|.-.+.  |++++|+       +.+++|.-|++.+|...+.+   +..--.++.|-.         +.+.- ++
T Consensus       135 ~~~~~~H~~s~~--~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i---~~~~ev~k~~~~---------~~k~~r~~  200 (479)
T KOG0299|consen  135 FRVIGKHQLSVT--SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYI---IERDEVLKSHGN---------PLKESRKG  200 (479)
T ss_pred             ceeeccccCcce--EEEeeccccceeecCCCcceeeeehhcCcccccc---cccchhhhhccC---------CCCccccc
Confidence            667788888899  9999999       89999999999999877552   000000110110         01111 37


Q ss_pred             CCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342          392 NNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW  470 (701)
Q Consensus       392 h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  470 (701)
                      |.. +.+++.||||+|||+|+.|..|.||+..    +.+..+   .+.+|.+.|.+++|-.....+++++.|+.+++|++
T Consensus       201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~----t~ehv~---~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~  273 (479)
T KOG0299|consen  201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCD----TLEHVK---VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSI  273 (479)
T ss_pred             ccceeEEEEEcCCCcEEEecCCCceEEEecCc----ccchhh---cccccccceeeeeeecCccceeeeecCCceEEEeh
Confidence            888 9999999999999999999999999998    444334   35679999999999988889999999999999976


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI  547 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~  547 (701)
                                           +...++.. + .+|.+.|.++...  +..+.+|+ |+++++|++.. .....|.++.+.
T Consensus       274 ---------------------~~~s~vet-l-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~s  329 (479)
T KOG0299|consen  274 ---------------------DQLSYVET-L-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGS  329 (479)
T ss_pred             ---------------------hHhHHHHH-H-hCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCC
Confidence                                 22222222 2 3899999999887  66666666 99999999943 444567788889


Q ss_pred             eEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342          548 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG------------HQNRITCLAYSLSLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       548 i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~------------h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~  615 (701)
                      +-|++|-.+..+++|+.+|.|.+|++.+.+++.+..-            +..+|++++..|...++|+||.+|.|++|-+
T Consensus       330 idcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  330 IDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             eeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence            9999998777899999999999999998888765532            2238999999999999999999999999999


Q ss_pred             CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEE
Q 005342          616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYE  664 (701)
Q Consensus       616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd  664 (701)
                      ..|-. ...++..++..     +-|++++|+++|+.+++|  ....+--|-
T Consensus       410 ~~g~r-~i~~l~~ls~~-----GfVNsl~f~~sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  410 EDGLR-AINLLYSLSLV-----GFVNSLAFSNSGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             cCCcc-ccceeeecccc-----cEEEEEEEccCCCEEEEecccccccceee
Confidence            99832 12333323211     789999999999988875  343443443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.3e-23  Score=188.76  Aligned_cols=299  Identities=14%  Similarity=0.195  Sum_probs=214.7

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc--
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC--  388 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~--  388 (701)
                      +++..++. ...|.  .++|.|.       +..++++|-....-..++.            +|....-.    +...|  
T Consensus        24 ~~i~~l~d-sqair--av~fhp~g~lyavgsnskt~ric~yp~l~~~r~------------~hea~~~p----p~v~~kr   84 (350)
T KOG0641|consen   24 EAINILED-SQAIR--AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH------------AHEAAKQP----PSVLCKR   84 (350)
T ss_pred             EEEEEecc-hhhee--eEEecCCCceEEeccCCceEEEEccccccCccc------------ccccccCC----CeEEeee
Confidence            44555554 44588  9999998       6667777654432221111            22110000    01122  


Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccc--cCCCCceeEeecCCCCCCCCEEEEEEecC----CCEEEEEEC
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQL--INEPSECRTLLLPDNSFGGRVVRLIYSHS----GDFLVALTQ  461 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~--~~~~~~~~~l~~~~~~~~~~v~~l~~spd----g~~l~s~s~  461 (701)
                      -+.|.+ |.|.+|+|+|+++++|+.|++|++..++.  ...+|.-..+    +.|.+.|..++|-.+    |..|++++.
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~----nmhdgtirdl~fld~~~s~~~il~s~ga  160 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF----NMHDGTIRDLAFLDDPESGGAILASAGA  160 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee----eecCCceeeeEEecCCCcCceEEEecCC
Confidence            346777 99999999999999999999999987752  1222322333    348999999999654    345555444


Q ss_pred             CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEE-EecCCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342          462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF-ALRGSHLFSAS-GGKISIFSLETFQTLA  539 (701)
Q Consensus       462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l-~~s~~~l~s~s-dg~I~iwd~~~~~~~~  539 (701)
                       |..+||-.                   |...|+-... + .+|.+.|.++ .|+|-++++|+ |.+|++||++-..++.
T Consensus       161 -gdc~iy~t-------------------dc~~g~~~~a-~-sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~  218 (350)
T KOG0641|consen  161 -GDCKIYIT-------------------DCGRGQGFHA-L-SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVN  218 (350)
T ss_pred             -CcceEEEe-------------------ecCCCCccee-e-cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceee
Confidence             44444422                   4455553332 2 4788888776 34588999999 9999999999888887


Q ss_pred             EecCC-------CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342          540 TFANP-------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC  611 (701)
Q Consensus       540 ~~~~~-------~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~  611 (701)
                      ++...       .+.|.++++.|.| ++++|-.|....+||++.+..++.+..|...|.++.|||...|+.+||.|..|+
T Consensus       219 ~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ik  298 (350)
T KOG0641|consen  219 TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIK  298 (350)
T ss_pred             eccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEE
Confidence            76421       3678999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECC
Q 005342          612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP  666 (701)
Q Consensus       612 vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~  666 (701)
                      +-|+...- ....++- +.+.|.   ..+..+.|+|..-.+++ +.|.++.+|-+.
T Consensus       299 ltdlqgdl-a~el~~~-vv~ehk---dk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  299 LTDLQGDL-AHELPIM-VVAEHK---DKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             Eeecccch-hhcCceE-EEEecc---CceEEEEecCccceeeeccCcceEEEeccC
Confidence            99998742 1112222 233454   78889999998766666 589999999763

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.7e-25  Score=209.01  Aligned_cols=277  Identities=13%  Similarity=0.203  Sum_probs=220.4

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +.||.+ ||.++-......+.+++.|.+.+||.++    .+.|..   .+.+|.+.|.++.|++.+..+++++.|++-.|
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E----sg~CL~---~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLE----SGACLA---TYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             hcccccceeeehhhcCCcceeecccccceeEEeec----ccccee---eecccccceeeEEeccccceEEEccCCcchHH
Confidence            568888 9999998888899999999999999999    898887   66789999999999999999999999999999


Q ss_pred             Eec----CCCCc--cccccc-----------ccee-eEEeeCCCCe-EEeecccCCCCCCeEEEEec--CCEEEEEe-CC
Q 005342          468 WKW----QSNKQ--SLEEEN-----------VNME-SQLYQPSSKL-VMTNDIAADPKDSISCFALR--GSHLFSAS-GG  525 (701)
Q Consensus       468 wd~----~~~~~--~~g~~~-----------~~~~-i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg  525 (701)
                      |..    +....  +.++..           .... ..--|..+-. .+.. + .+|...|.+..|-  |+.+++++ |.
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~-l-tgH~~vV~a~dWL~gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR-L-TGHRAVVSACDWLAGGQQMVTASWDR  294 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee-e-eccccceEehhhhcCcceeeeeeccc
Confidence            972    11111  111100           0000 0000111111 1111 2 4788999888887  88999999 99


Q ss_pred             eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342          526 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s  603 (701)
                      +..+||.+++..++.+.||....+.++-+|.. ++++.+.|.+.++||.+.. ..+..|.||...|+++.|..|. .+++
T Consensus       295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVS  373 (481)
T KOG0300|consen  295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVS  373 (481)
T ss_pred             cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceee
Confidence            99999999999999999999999999999999 9999999999999999853 4577899999999999998765 4889


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee------
Q 005342          604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL------  676 (701)
Q Consensus       604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~------  676 (701)
                      ||+|.+|+|||+++.+    .++.++...     ++++.++.+..++.++.- ++..|++||+ +|..+..++.      
T Consensus       374 gSDDrTvKvWdLrNMR----splATIRtd-----S~~NRvavs~g~~iIAiPhDNRqvRlfDl-nG~RlaRlPrtsRqgH  443 (481)
T KOG0300|consen  374 GSDDRTVKVWDLRNMR----SPLATIRTD-----SPANRVAVSKGHPIIAIPHDNRQVRLFDL-NGNRLARLPRTSRQGH  443 (481)
T ss_pred             cCCCceEEEeeecccc----CcceeeecC-----CccceeEeecCCceEEeccCCceEEEEec-CCCccccCCccccccc
Confidence            9999999999999853    444434333     789999999988888886 6778999999 6777777773      


Q ss_pred             ---eeEEEEEee
Q 005342          677 ---ISHIMFVQI  685 (701)
Q Consensus       677 ---i~~~~fs~~  685 (701)
                         |++.+|+..
T Consensus       444 rRMV~c~AW~ee  455 (481)
T KOG0300|consen  444 RRMVTCCAWLEE  455 (481)
T ss_pred             ceeeeeeecccc
Confidence               889999643

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=1e-24  Score=219.28  Aligned_cols=276  Identities=18%  Similarity=0.204  Sum_probs=205.4

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      |.+|.. |.++++.|.|..|++|+-|-.|++||+..+....+..+.-.|  .....|.++.|++.|..|++.+.....++
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEecCcceeE
Confidence            778888 999999999999999999999999999865544433221122  23567999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc-EEEEe
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ-TLATF  541 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~-~~~~~  541 (701)
                      +|-.+...      ..+      ....+.+.. ...++|...++|.+|+   .+.+++++ ||++++||+...+ ..+.+
T Consensus       241 ~DRdG~~~------~e~------~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi  308 (641)
T KOG0772|consen  241 LDRDGFEI------VEF------SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI  308 (641)
T ss_pred             EccCCcee------eee------eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence            98643321      100      011111110 0125899999999999   55677777 9999999987654 33333


Q ss_pred             c-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce---EEeecCCCC--CeEEEEEecCCCEEEEEeCCCeE
Q 005342          542 A-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAKLKGHQN--RITCLAYSLSLNVLVSSGADAQL  610 (701)
Q Consensus       542 ~-----~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~---~~~l~~h~~--~V~~v~~spdg~~l~s~s~D~~I  610 (701)
                      .     +..-++++++|+||| .||+|+.||.|.+|+..+...   ...-..|..  .|++++||+||++|+|-|.|+++
T Consensus       309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL  388 (641)
T KOG0772|consen  309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL  388 (641)
T ss_pred             eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence            2     224467999999999 999999999999999755322   223345776  89999999999999999999999


Q ss_pred             EEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-------ecCeEEEEECCCCceeeeeee----eeE
Q 005342          611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-------HEGQIDVYEAPTLNHTSQVLL----ISH  679 (701)
Q Consensus       611 ~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-------~Dg~I~iwd~~~g~~~~~l~~----i~~  679 (701)
                      ++||++..+    +++....+-..  ..+-+.++|||+.++|++|       ..|++.+||..+.+.++.+.-    |..
T Consensus       389 KvWDLrq~k----kpL~~~tgL~t--~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~  462 (641)
T KOG0772|consen  389 KVWDLRQFK----KPLNVRTGLPT--PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVR  462 (641)
T ss_pred             eeeeccccc----cchhhhcCCCc--cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEE
Confidence            999999853    44442211111  1556789999999999985       146799999999998888775    666


Q ss_pred             EEEEe
Q 005342          680 IMFVQ  684 (701)
Q Consensus       680 ~~fs~  684 (701)
                      +.|.|
T Consensus       463 ~~Whp  467 (641)
T KOG0772|consen  463 CLWHP  467 (641)
T ss_pred             Eeecc
Confidence            67754

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.5e-25  Score=203.62  Aligned_cols=249  Identities=13%  Similarity=0.163  Sum_probs=198.4

Q ss_pred             CcccccccCccceeEEEe--ecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcc
Q 005342          307 DKLKFPSMDKSRLLSLIK--QIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLD  376 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~--~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (701)
                      |++.|-++..+.-+..+.  .-.+...  .++|+++        +.||+++|||+....                 .   
T Consensus        38 G~L~ile~~~~~gi~e~~s~d~~D~Lf--dV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-----------------~---   95 (311)
T KOG0277|consen   38 GRLFILEVTDPKGIQECQSYDTEDGLF--DVAWSENHENQVIAASGDGSLRLFDLTMPS-----------------K---   95 (311)
T ss_pred             ceEEEEecCCCCCeEEEEeeeccccee--EeeecCCCcceEEEEecCceEEEeccCCCC-----------------c---
Confidence            666666664333232222  1344566  8999998        899999999943211                 1   


Q ss_pred             cccCCCCCCCccccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC-C
Q 005342          377 ASSGDDSNDSSCFNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-G  453 (701)
Q Consensus       377 ~s~~D~~~~~~~l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd-g  453 (701)
                              +..+++.|.. |.++.|++ +++.+++++.|++|++|+..    ..+...   ++.+|...|...+|+|. +
T Consensus        96 --------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~----r~~Sv~---Tf~gh~~~Iy~a~~sp~~~  160 (311)
T KOG0277|consen   96 --------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN----RPNSVQ---TFNGHNSCIYQAAFSPHIP  160 (311)
T ss_pred             --------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC----CCcceE---eecCCccEEEEEecCCCCC
Confidence                    4567889999 99999997 46678888999999999987    333233   46689999999999994 6


Q ss_pred             CEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEE
Q 005342          454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISI  529 (701)
Q Consensus       454 ~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~i  529 (701)
                      +.++++|.|+.+++||+                   +.. |+.+.  + ..|...|.|+.|+   ...+++|+ |+.|+.
T Consensus       161 nlfas~Sgd~~l~lwdv-------------------r~~-gk~~~--i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~  217 (311)
T KOG0277|consen  161 NLFASASGDGTLRLWDV-------------------RSP-GKFMS--I-EAHNSEILCCDWSKYNHNVLATGGVDNLVRG  217 (311)
T ss_pred             CeEEEccCCceEEEEEe-------------------cCC-CceeE--E-EeccceeEeecccccCCcEEEecCCCceEEE
Confidence            78999999999999997                   323 44332  2 3688899999999   66788888 999999


Q ss_pred             EeCCCCc-EEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEEec-CCCEEEEE
Q 005342          530 FSLETFQ-TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSL-SLNVLVSS  604 (701)
Q Consensus       530 wd~~~~~-~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~  604 (701)
                      ||++..+ ++..+.+|.-.|+.+.|||..  .||+++.|-+++|||... ...+.+...|+..|..+.||+ ++.++|++
T Consensus       218 wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~  297 (311)
T KOG0277|consen  218 WDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST  297 (311)
T ss_pred             EehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeec
Confidence            9998754 677889999999999999998  999999999999999874 445667777999999999998 67799999


Q ss_pred             eCCCeEEEEEC
Q 005342          605 GADAQLCVWDA  615 (701)
Q Consensus       605 s~D~~I~vwd~  615 (701)
                      +.|..++||+.
T Consensus       298 gWDe~l~Vw~p  308 (311)
T KOG0277|consen  298 GWDELLYVWNP  308 (311)
T ss_pred             ccccceeeecc
Confidence            99999999985

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=1.6e-24  Score=210.73  Aligned_cols=257  Identities=16%  Similarity=0.221  Sum_probs=204.7

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC---EEEEEECCCcEE
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD---FLVALTQTATHK  466 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~---~l~s~s~dg~i~  466 (701)
                      -|++ |.++...  ++.+++|+.||.+++|+..     |++..   ...+|.++|.+++|.....   .+++++.|.+++
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-----Gk~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~  172 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-----GKSIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR  172 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC-----CceEE---EEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence            6788 9998888  7799999999999999994     55554   3347999999888854333   599999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC----------
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE----------  533 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~----------  533 (701)
                      +|.++.                   .....-......+|...|.+++..  |.++++|+ |..|.+|+..          
T Consensus       173 Lw~~~~-------------------~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~  233 (423)
T KOG0313|consen  173 LWKWNV-------------------GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESS  233 (423)
T ss_pred             EEEecC-------------------chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccccccc
Confidence            997633                   222211111224899999999987  99999999 9999999932          


Q ss_pred             ---------------CCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC
Q 005342          534 ---------------TFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL  598 (701)
Q Consensus       534 ---------------~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg  598 (701)
                                     ++.++.++.||..+|.++.|++.+.+++++.|.+|+.||+.++..+.++.+. ..++++..+|..
T Consensus       234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~  312 (423)
T KOG0313|consen  234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLS  312 (423)
T ss_pred             chhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC-cceeEeeccccc
Confidence                           1224557789999999999999559999999999999999999999888854 568999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE-EE-ecCeEEEEECCCCc-eeeeee
Q 005342          599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SI-HEGQIDVYEAPTLN-HTSQVL  675 (701)
Q Consensus       599 ~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~-sg-~Dg~I~iwd~~~g~-~~~~l~  675 (701)
                      ++|++||.|..|++||.+++.  ......++ .||.   +.|.++.|+|...+.+ ++ .|+++++||+++.+ .+..+.
T Consensus       313 ~Ll~~gssdr~irl~DPR~~~--gs~v~~s~-~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~  386 (423)
T KOG0313|consen  313 KLLASGSSDRHIRLWDPRTGD--GSVVSQSL-IGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA  386 (423)
T ss_pred             ceeeecCCCCceeecCCCCCC--CceeEEee-ecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence            999999999999999999863  11222223 3666   8999999999876655 44 89999999999877 788887


Q ss_pred             e----eeEEEEE
Q 005342          676 L----ISHIMFV  683 (701)
Q Consensus       676 ~----i~~~~fs  683 (701)
                      +    |-++.|+
T Consensus       387 ~h~DKvl~vdW~  398 (423)
T KOG0313|consen  387 GHNDKVLSVDWN  398 (423)
T ss_pred             cCCceEEEEecc
Confidence            7    7777774

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.7e-24  Score=214.78  Aligned_cols=270  Identities=15%  Similarity=0.171  Sum_probs=211.4

Q ss_pred             CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342          327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES  398 (701)
Q Consensus       327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l  398 (701)
                      .+.|.  +++|||.       ...-.+.||+..+....+.+                             ..-.. |.++
T Consensus        26 ~~~vs--sl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~-----------------------------srFk~~v~s~   74 (487)
T KOG0310|consen   26 HNSVS--SLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTF-----------------------------SRFKDVVYSV   74 (487)
T ss_pred             cCcce--eEecCCCCCCceEEecccEEEEEecchhhhhhhH-----------------------------HhhccceeEE
Confidence            34588  9999995       45567788887766555542                             12234 8899


Q ss_pred             EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEEecCCCCccc
Q 005342          399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSL  477 (701)
Q Consensus       399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~~  477 (701)
                      .|-.||++||+|+..|.|+++|..    +.....   ....|..+|..+.|+|.++ .+++|+.|+.+++||+       
T Consensus        75 ~fR~DG~LlaaGD~sG~V~vfD~k----~r~iLR---~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~-------  140 (487)
T KOG0310|consen   75 DFRSDGRLLAAGDESGHVKVFDMK----SRVILR---QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL-------  140 (487)
T ss_pred             EeecCCeEEEccCCcCcEEEeccc----cHHHHH---HHhhccCceeEEEecccCCeEEEecCCCceEEEEEc-------
Confidence            999999999999999999999965    322222   3456999999999999765 5566777788888865       


Q ss_pred             cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCC-cEEEEecCCCCCeEEEE
Q 005342          478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFI  552 (701)
Q Consensus       478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~  552 (701)
                                    .+... ..++ .+|++.|.|.+++   +.++++|+ ||.|++||++.. ..+.++. |..+|.++.
T Consensus       141 --------------s~a~v-~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl  203 (487)
T KOG0310|consen  141 --------------STAYV-QAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVL  203 (487)
T ss_pred             --------------CCcEE-EEEe-cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEE
Confidence                          44443 2224 5899999999999   66899999 999999999876 6677776 899999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc
Q 005342          553 LLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  630 (701)
Q Consensus       553 ~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~  630 (701)
                      +-|.| .|++++. ..|++||+.+| +.+..+..|...|+|+++..++..|+|||-|+.|++||+.+.+.+......   
T Consensus       204 ~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---  279 (487)
T KOG0310|consen  204 ALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---  279 (487)
T ss_pred             EcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---
Confidence            99999 8888764 58999999855 555555559999999999999999999999999999998875543333333   


Q ss_pred             CCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342          631 TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN  669 (701)
Q Consensus       631 ~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~  669 (701)
                             ++|.+++.+|+++.++.| .||.+-+=+...++
T Consensus       280 -------~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  280 -------GPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             -------cceeeEEecCCCceEEEecccceeeeehhhccc
Confidence                   899999999999999998 88887766544433

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.1e-24  Score=225.11  Aligned_cols=260  Identities=15%  Similarity=0.158  Sum_probs=218.1

Q ss_pred             hhhhhc--cccc----CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccc
Q 005342          297 VLVERN--PMLQ----DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSI  363 (701)
Q Consensus       297 ~l~~~~--~~la----~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~  363 (701)
                      .|+.|.  ..+|    ..|.+|+..++........+...|.  ++.|+++       ..+|+|.|||..+.+.++.+   
T Consensus       181 nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~~~~vt--Sv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~---  255 (484)
T KOG0305|consen  181 NLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFGEELVT--SVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL---  255 (484)
T ss_pred             hHhhcccCCeEEEEecceEEEEecCCCceEEeEecCCCceE--EEEECCCCCEEEEeecCCeEEEEehhhccccccc---
Confidence            456666  3455    6899999999998888777788899  9999999       78999999999988777762   


Q ss_pred             cCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCC
Q 005342          364 LTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG  442 (701)
Q Consensus       364 ~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~  442 (701)
                             .+                  +|.. |.+++|.  +..+.+|+.|+.|..+|+..    .+... . ...+|..
T Consensus       256 -------~~------------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~----~~~~~-~-~~~~H~q  302 (484)
T KOG0305|consen  256 -------RG------------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI----SQHVV-S-TLQGHRQ  302 (484)
T ss_pred             -------cC------------------CcCceeEEEecc--CceEEEecCCCcEEEEEEec----chhhh-h-hhhcccc
Confidence                   22                  2677 9999998  67899999999999999973    22211 1 2457999


Q ss_pred             CEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEE
Q 005342          443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHL  519 (701)
Q Consensus       443 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l  519 (701)
                      .|..+.|++|+.++++|+.|+.+.|||..                     ....... + ..|..+|..++|+   .+.|
T Consensus       303 eVCgLkws~d~~~lASGgnDN~~~Iwd~~---------------------~~~p~~~-~-~~H~aAVKA~awcP~q~~lL  359 (484)
T KOG0305|consen  303 EVCGLKWSPDGNQLASGGNDNVVFIWDGL---------------------SPEPKFT-F-TEHTAAVKALAWCPWQSGLL  359 (484)
T ss_pred             eeeeeEECCCCCeeccCCCccceEeccCC---------------------CccccEE-E-eccceeeeEeeeCCCccCce
Confidence            99999999999999999999999999652                     2221111 2 3799999999999   8889


Q ss_pred             EEEe---CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEE--EEeCCCcEEEEeCCCCceEEeecCCCCCeEEEE
Q 005342          520 FSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA--FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  593 (701)
Q Consensus       520 ~s~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~--~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~  593 (701)
                      |+|+   |+.|++||..+++.+..+. ....|+++.|++.. -++  .|..++.|.||+..+.+.+..+.||...|..++
T Consensus       360 AsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la  438 (484)
T KOG0305|consen  360 ATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA  438 (484)
T ss_pred             EEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE
Confidence            9886   7999999999999998886 57789999999998 443  466677999999999999999999999999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEECCCC
Q 005342          594 YSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       594 ~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      ++|||..+++|+.|.++++|++-..
T Consensus       439 ~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  439 LSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999999999999874

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=1.6e-24  Score=234.75  Aligned_cols=247  Identities=15%  Similarity=0.172  Sum_probs=212.9

Q ss_pred             CcccccccCccceeEE-EeecCcceeeeEEEEc--cC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342          307 DKLKFPSMDKSRLLSL-IKQIMDWWVPYCINVM--PN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS  378 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~-l~~h~~~v~~~~l~fs--pd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  378 (701)
                      ++|++||..++..+.. +.+|.+.|+  +++|.  .+     +.|.++++||..+|.|...          +.       
T Consensus       228 ~tl~~~~~~~~~~i~~~l~GH~g~V~--~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~----------l~-------  288 (537)
T KOG0274|consen  228 STLHLWDLNNGYLILTRLVGHFGGVW--GLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS----------LQ-------  288 (537)
T ss_pred             ceeEEeecccceEEEeeccCCCCCce--eEEEecCCCEEEEEecCCcEEeEecCCCcEEEE----------ec-------
Confidence            7789999999999988 999999999  99998  44     8899999999999999988          33       


Q ss_pred             cCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE
Q 005342          379 SGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV  457 (701)
Q Consensus       379 ~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~  457 (701)
                                  +|.+ |.++...+  .++++|+.|.+|++|++.    .+.+..   ...+|.+.|.++..+  +.+++
T Consensus       289 ------------gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~----n~~~l~---l~~~h~~~V~~v~~~--~~~lv  345 (537)
T KOG0274|consen  289 ------------GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVT----NGACLN---LLRGHTGPVNCVQLD--EPLLV  345 (537)
T ss_pred             ------------CCCceEEEEEccC--ceEeeccCCceEEEEecc----CcceEE---EeccccccEEEEEec--CCEEE
Confidence                        5555 66666544  488889999999999998    777766   334599999999998  88999


Q ss_pred             EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecC-CEEEEEe-CCeEEEEeCCCC
Q 005342          458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRG-SHLFSAS-GGKISIFSLETF  535 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~-~~l~s~s-dg~I~iwd~~~~  535 (701)
                      +|+.||+|++||.                     .+++++.. + .+|..+|.++.+.+ +.+++|+ |++|++||+++.
T Consensus       346 sgs~d~~v~VW~~---------------------~~~~cl~s-l-~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  346 SGSYDGTVKVWDP---------------------RTGKCLKS-L-SGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             EEecCceEEEEEh---------------------hhceeeee-e-cCCcceEEEEEecCcceEEeeeeccceEeecCCch
Confidence            9999999999954                     67777764 3 57999999998886 9999999 999999999999


Q ss_pred             -cEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342          536 -QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVW  613 (701)
Q Consensus       536 -~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~~l~s~s~D~~I~vw  613 (701)
                       +++.++.+|...+..+.+... ++++++.|++|++||..++++++++.+ |.+.|..+++.  ...+++++.|+++++|
T Consensus       403 ~~c~~tl~~h~~~v~~l~~~~~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~  479 (537)
T KOG0274|consen  403 RKCIHTLQGHTSLVSSLLLRDN-FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLW  479 (537)
T ss_pred             hhhhhhhcCCcccccccccccc-eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEE
Confidence             999999999888866655433 899999999999999999999999999 67889888876  4678889999999999


Q ss_pred             ECCCCeee
Q 005342          614 DAVGWKKL  621 (701)
Q Consensus       614 d~~~g~~~  621 (701)
                      |++++...
T Consensus       480 dl~~~~~~  487 (537)
T KOG0274|consen  480 DLRSGTLI  487 (537)
T ss_pred             ecccCchh
Confidence            99998643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=5.3e-24  Score=221.49  Aligned_cols=275  Identities=16%  Similarity=0.176  Sum_probs=226.6

Q ss_pred             ccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342          316 KSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF  389 (701)
Q Consensus       316 ~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l  389 (701)
                      .-++.+.+.+|...|.  .+++.++      |.|+++++|+-..+.-+..             |              .+
T Consensus         3 ~Y~ls~~l~gH~~DVr--~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~-------------~--------------~~   53 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVR--AVAVTDGVCIISGSRDGTVKVWAKKGKQYLET-------------H--------------AF   53 (745)
T ss_pred             cceeEEEeccCccchh--eeEecCCeEEeecCCCCceeeeeccCcccccc-------------e--------------ec
Confidence            3456788999999998  7777777      8899999998765544332             1              23


Q ss_pred             cCCCc-eEE-EEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          390 NDNNQ-SRE-STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       390 ~~h~~-V~~-l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .+|.+ |.. ++|-+ ++-.+++|+.|+.+.+|...    ......   .+.+|...|.|+....++. +++||-|.+++
T Consensus        54 ~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~----~~~P~~---~LkgH~snVC~ls~~~~~~-~iSgSWD~Tak  125 (745)
T KOG0301|consen   54 EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS----QAEPLY---TLKGHKSNVCSLSIGEDGT-LISGSWDSTAK  125 (745)
T ss_pred             ccCcceeeccceeccccCcceEeecccceEEEEecC----CCCchh---hhhccccceeeeecCCcCc-eEecccccceE
Confidence            46666 555 88875 55569999999999999987    333233   4568999999999888888 89999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      +|..                       +++... + .+|...|++++.- .+.+++|+ |.+|++|.-  ++.+++|.+|
T Consensus       126 vW~~-----------------------~~l~~~-l-~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gH  178 (745)
T KOG0301|consen  126 VWRI-----------------------GELVYS-L-QGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGH  178 (745)
T ss_pred             Eecc-----------------------hhhhcc-c-CCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccc
Confidence            9933                       333322 2 5899999988877 66889999 999999985  7889999999


Q ss_pred             CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          545 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       545 ~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      ...|+.+++-+++.+++++.||.|+.|++ +|+.+.++.||+..|.++...+++..++|+++|++++||+...    +..
T Consensus       179 tD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e----~~q  253 (745)
T KOG0301|consen  179 TDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE----CVQ  253 (745)
T ss_pred             hhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc----eEE
Confidence            99999999999987889999999999998 7889999999999999999888888999999999999999873    455


Q ss_pred             eeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342          625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP  666 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~  666 (701)
                      .+.    ...   ..|+++.+-++|..++.|+||.|+||...
T Consensus       254 ~I~----lPt---tsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  254 VIT----LPT---TSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEe----cCc---cceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            565    222   57999999999998888899999999876

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=9.9e-25  Score=206.40  Aligned_cols=285  Identities=13%  Similarity=0.203  Sum_probs=216.1

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCC-----------CCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINE-----------PSECRTLLLPDNSFGGRVVRLIYSHSGDFL  456 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~-----------~~~~~~l~~~~~~~~~~v~~l~~spdg~~l  456 (701)
                      +..|.. +.+.+|+|||.++|+|+.|.+|+|.|++.+-.           +.+.+.+.-++-.|.+.|.++.|+|....|
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL  187 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL  187 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence            567888 99999999999999999999999999973311           111111111334688999999999999999


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE  533 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~  533 (701)
                      ++|+.|++|+++|+....                  -.+-. +.+  ....+|.+++|+  |+++++|. ...+++||++
T Consensus       188 iS~srD~tvKlFDfsK~s------------------aKrA~-K~~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~  246 (430)
T KOG0640|consen  188 ISGSRDNTVKLFDFSKTS------------------AKRAF-KVF--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN  246 (430)
T ss_pred             EeccCCCeEEEEecccHH------------------HHHHH-HHh--hccceeeeEeecCCCceEEEecCCCceeEEecc
Confidence            999999999999873311                  01111 112  234689999999  99999999 5899999999


Q ss_pred             CCcEEEEe---cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-CCC-CeEEEEEecCCCEEEEEeCC
Q 005342          534 TFQTLATF---ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQN-RITCLAYSLSLNVLVSSGAD  607 (701)
Q Consensus       534 ~~~~~~~~---~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~-~V~~v~~spdg~~l~s~s~D  607 (701)
                      +.++...-   .+|...|+++.+++.| +.++|+.||.|++||--+++++.++.. |.+ .|.+..|+.+|+|+.+.+.|
T Consensus       247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D  326 (430)
T KOG0640|consen  247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD  326 (430)
T ss_pred             ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence            98875543   3578899999999999 999999999999999999999888764 654 78889999999999999999


Q ss_pred             CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCceeeeeee-----eeEE
Q 005342          608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL-----ISHI  680 (701)
Q Consensus       608 ~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~-----i~~~  680 (701)
                      ..+++|.+.+|+.+....=    .|.++-..--+...|+....+++.-  ..+.+.-||.+++..+..++.     +..+
T Consensus       327 S~vkLWEi~t~R~l~~YtG----Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i  402 (430)
T KOG0640|consen  327 STVKLWEISTGRMLKEYTG----AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI  402 (430)
T ss_pred             ceeeeeeecCCceEEEEec----CCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence            9999999999875432111    1211111233566788888888873  567899999999887777665     6666


Q ss_pred             EEEeeEEee------eecceEEEE
Q 005342          681 MFVQIVVKF------HSFKFFYVA  698 (701)
Q Consensus       681 ~fs~~~~~f------~~~~~~~~~  698 (701)
                      .-||..-.|      +..+|||=-
T Consensus       403 ~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  403 VHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             EeCCCCCceeeecccceeeeeeec
Confidence            666665554      456677743

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=4.8e-24  Score=233.25  Aligned_cols=251  Identities=13%  Similarity=0.189  Sum_probs=198.3

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCC------C-----ceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP------S-----ECRTLLLPDNSFGGRVVRLIYSHSGDFL  456 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~------~-----~~~~l~~~~~~~~~~v~~l~~spdg~~l  456 (701)
                      ...|.+ |+|+.|+|||++||+|++|+.|.||........      |     +-++....+.+|...|..++|+|++.++
T Consensus        65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l  144 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL  144 (942)
T ss_pred             eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence            668999 999999999999999999999999998731100      1     1122222345799999999999999999


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE  533 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~  533 (701)
                      ++++.|++|.+||.                     .+...+.. + .+|.+.|-.+.|+  |+++++-+ |++|++|++.
T Consensus       145 vS~s~DnsViiwn~---------------------~tF~~~~v-l-~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~  201 (942)
T KOG0973|consen  145 VSVSLDNSVIIWNA---------------------KTFELLKV-L-RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS  201 (942)
T ss_pred             EEecccceEEEEcc---------------------ccceeeee-e-ecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence            99999999999954                     44444432 3 5899999999999  99999999 8999999988


Q ss_pred             CCcEEEEecCCC------CCeEEEEEcCCC-eEEEEeC----CCcEEEEeCCCCceEEeecCCCCCeEEEEEecC-----
Q 005342          534 TFQTLATFANPP------PIATYFILLPQD-LFAFGFD----DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-----  597 (701)
Q Consensus       534 ~~~~~~~~~~~~------~~i~~l~~spdg-~l~~gs~----dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spd-----  597 (701)
                      +....+.+.++.      ..+..+.||||| +|++...    -..+.|.+..+.+.-..|-||.+++.+++|+|.     
T Consensus       202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~  281 (942)
T KOG0973|consen  202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERN  281 (942)
T ss_pred             cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccc
Confidence            877777776552      346889999999 8877532    237899998888888899999999999999982     


Q ss_pred             CC------------EEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEE
Q 005342          598 LN------------VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE  664 (701)
Q Consensus       598 g~------------~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd  664 (701)
                      .+            .+|+||.|++|-||.....++.  ..++.+.      ...|..++|+|||..|++ +.||+|.+..
T Consensus       282 ~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl--~vi~~lf------~~SI~DmsWspdG~~LfacS~DGtV~~i~  353 (942)
T KOG0973|consen  282 NKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL--FVIHNLF------NKSIVDMSWSPDGFSLFACSLDGTVALIH  353 (942)
T ss_pred             cccCCccCCCcceEEEEEecCCccEEEEecCCCCch--hhhhhhh------cCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence            11            5789999999999999764322  2222121      277999999999987776 6899999999


Q ss_pred             CCCCce
Q 005342          665 APTLNH  670 (701)
Q Consensus       665 ~~~g~~  670 (701)
                      ++..+.
T Consensus       354 Fee~El  359 (942)
T KOG0973|consen  354 FEEKEL  359 (942)
T ss_pred             cchHHh
Confidence            976543

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=3.7e-23  Score=224.94  Aligned_cols=245  Identities=11%  Similarity=0.082  Sum_probs=178.5

Q ss_pred             EcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC-CCEEEEEECCCcEEEEecCCCCccccccccceeeEE
Q 005342          410 AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQL  488 (701)
Q Consensus       410 ~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~  488 (701)
                      |+.++.+++|+...    .....   ...+|.+.|.+++|+|+ +.+|++|+.||.|++||+......    .       
T Consensus        50 GG~~gvI~L~~~~r----~~~v~---~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~----~-------  111 (568)
T PTZ00420         50 GGLIGAIRLENQMR----KPPVI---KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES----V-------  111 (568)
T ss_pred             CCceeEEEeeecCC----CceEE---EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc----c-------
Confidence            56678899999762    22222   33579999999999997 789999999999999988542100    0       


Q ss_pred             eeCCCCeEEeecccCCCCCCeEEEEec--CCE-EEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe
Q 005342          489 YQPSSKLVMTNDIAADPKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF  563 (701)
Q Consensus       489 ~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~-l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs  563 (701)
                       . .....+.. + .+|...|.+++|+  +.. +++++ |+.|++||+++++.+..+. +...|.+++|+|+| ++++++
T Consensus       112 -~-~i~~p~~~-L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s  186 (568)
T PTZ00420        112 -K-EIKDPQCI-L-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC  186 (568)
T ss_pred             -c-ccccceEE-e-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe
Confidence             0 00011111 2 4788999999999  554 56778 9999999999998877776 56789999999999 999999


Q ss_pred             CCCcEEEEeCCCCceEEeecCCCCCeEEE-----EEecCCCEEEEEeCCC----eEEEEECCC-CeeeeeeeeeeccCCC
Q 005342          564 DDSSILVHCPCTKKTKAKLKGHQNRITCL-----AYSLSLNVLVSSGADA----QLCVWDAVG-WKKLCSKFLHSFQTGL  633 (701)
Q Consensus       564 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~v-----~~spdg~~l~s~s~D~----~I~vwd~~~-g~~~~~~~l~~~~~~~  633 (701)
                      .|+.|+|||+++++.+.++.+|.+.+.+.     .|++++.+|++++.|+    +|+|||++. ++.+....+.    .+
T Consensus       187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld----~~  262 (568)
T PTZ00420        187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID----NA  262 (568)
T ss_pred             cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec----CC
Confidence            99999999999999999999998865433     3458999999988774    799999996 3322222222    12


Q ss_pred             CCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee------eeEEEEEee
Q 005342          634 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL------ISHIMFVQI  685 (701)
Q Consensus       634 ~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~------i~~~~fs~~  685 (701)
                      .   +.+......++|.++++| .|++|++|++..+.. ..+..      +.+++|.|.
T Consensus       263 ~---~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        263 S---APLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK  317 (568)
T ss_pred             c---cceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence            1   333334345568888887 899999999987743 22222      677888775

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=1e-23  Score=196.00  Aligned_cols=262  Identities=14%  Similarity=0.130  Sum_probs=207.5

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      |+||.. ++.+.|+.+|.+|.+|+.|.+..+|--.    .|+..-   +..+|.+.|+|+..+-+.+++++|+.|.++++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~----nGerlG---ty~GHtGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL----NGERLG---TYDGHTGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEec----CCceee---eecCCCceEEEEEecCCcceeeeccccceeEE
Confidence            678999 9999999999999999999999999875    444333   45689999999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC------CeEEEEeCC------
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG------GKISIFSLE------  533 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd------g~I~iwd~~------  533 (701)
                      ||+                     ++|+.+.. +  ....+|..+.|+  |++++...|      +.|.++|++      
T Consensus        79 WDv---------------------~tGk~la~-~--k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~  134 (327)
T KOG0643|consen   79 WDV---------------------ETGKQLAT-W--KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI  134 (327)
T ss_pred             EEc---------------------CCCcEEEE-e--ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence            955                     66665543 2  356789999999  666666553      579999998      


Q ss_pred             -CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342          534 -TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL  610 (701)
Q Consensus       534 -~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I  610 (701)
                       ...+...+..+.+.++.+-|+|-+ +|++|.+||.|.+||+++| +.+..-+.|...|+.+.++||..+++++|.|.+-
T Consensus       135 ~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtta  214 (327)
T KOG0643|consen  135 DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTA  214 (327)
T ss_pred             cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccc
Confidence             345677888888999999999999 9999999999999999997 4566667799999999999999999999999999


Q ss_pred             EEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE---ecCeEEEEECCCC------------ceeeeee
Q 005342          611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTL------------NHTSQVL  675 (701)
Q Consensus       611 ~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg---~Dg~I~iwd~~~g------------~~~~~l~  675 (701)
                      ++||+.+-+.+  +...   ..     .+|++.+++|...+++.|   .-..|.-=+.+.|            +.+..+.
T Consensus       215 kl~D~~tl~v~--Kty~---te-----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk  284 (327)
T KOG0643|consen  215 KLVDVRTLEVL--KTYT---TE-----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK  284 (327)
T ss_pred             eeeeccceeeE--EEee---ec-----ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc
Confidence            99999994322  2222   12     789999999988777763   2222333333333            2333444


Q ss_pred             e----eeEEEEEeeEEeeee
Q 005342          676 L----ISHIMFVQIVVKFHS  691 (701)
Q Consensus       676 ~----i~~~~fs~~~~~f~~  691 (701)
                      +    |++++|+|+..++-|
T Consensus       285 GHFGPINsvAfhPdGksYsS  304 (327)
T KOG0643|consen  285 GHFGPINSVAFHPDGKSYSS  304 (327)
T ss_pred             ccccCcceeEECCCCccccc
Confidence            4    999999998765543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=8.4e-24  Score=200.95  Aligned_cols=282  Identities=14%  Similarity=0.121  Sum_probs=205.8

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCc
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTAT  464 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~  464 (701)
                      .|++|.. |++++|+.||++||+++.|+.|++|++.+.... .++.+..++    -+..+.+.|+||-+-++... ...+
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcceEEEEEccCCE
Confidence            4889999 999999999999999999999999999854321 123332332    34567899999988665544 4678


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~  541 (701)
                      +++|.+.....  |.....  ..-||-       ..+...|...+-++-.-  +.+|++++ |..|.+|+++ |+.+..+
T Consensus       157 l~vyk~~K~~d--G~~~~~--~v~~D~-------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i  224 (420)
T KOG2096|consen  157 LCVYKLVKKTD--GSGSHH--FVHIDN-------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI  224 (420)
T ss_pred             EEEEEeeeccc--CCCCcc--cccccc-------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence            99997643321  111110  001110       01334566666666665  77899999 9999999997 9999998


Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC---CC-----ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342          542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---TK-----KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV  612 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~---~~-----~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v  612 (701)
                      ......-+..+.||+| ++++++..-.|.+|.+-   .|     ..+..++||.+.|...+|||+...++|.|.||+++|
T Consensus       225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri  304 (420)
T KOG2096|consen  225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI  304 (420)
T ss_pred             ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE
Confidence            8777778899999999 99999999999999863   22     235678999999999999999999999999999999


Q ss_pred             EECCCCeee--eeeeeeeccC-CCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee-----eeEEEEEe
Q 005342          613 WDAVGWKKL--CSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQ  684 (701)
Q Consensus       613 wd~~~g~~~--~~~~l~~~~~-~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~  684 (701)
                      ||..-.-..  ..+.++..+. -|. ..+.-..++.+|.|+.||.+...+++++..++|+...+++.     |++++|++
T Consensus       305 wdtdVrY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~  383 (420)
T KOG2096|consen  305 WDTDVRYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS  383 (420)
T ss_pred             eeccceEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC
Confidence            998642110  1111221100 011 01333489999999999999888999999999988776665     99999998


Q ss_pred             eE
Q 005342          685 IV  686 (701)
Q Consensus       685 ~~  686 (701)
                      +.
T Consensus       384 ~g  385 (420)
T KOG2096|consen  384 DG  385 (420)
T ss_pred             CC
Confidence            54

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=6.4e-23  Score=222.26  Aligned_cols=230  Identities=10%  Similarity=0.072  Sum_probs=173.1

Q ss_pred             cccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCc
Q 005342          388 CFNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTAT  464 (701)
Q Consensus       388 ~l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~  464 (701)
                      .+.+|.. |.+++|+| ++++|++|+.|++|++|++.+...............+|...|.+++|+|++ ..|++++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            3679999 99999999 889999999999999999973211100000001235689999999999986 68999999999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~  541 (701)
                      |++||+                     .++..... + .+|...|.+++|+  |..|++++ |+.|++||+++++.+..+
T Consensus       150 VrIWDl---------------------~tg~~~~~-l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl  206 (493)
T PTZ00421        150 VNVWDV---------------------ERGKAVEV-I-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV  206 (493)
T ss_pred             EEEEEC---------------------CCCeEEEE-E-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence            999966                     44443322 2 4688899999999  88999999 999999999999999888


Q ss_pred             cCCCCC-eEEEEEcCCC-eEEEEe----CCCcEEEEeCCCCc-eEEeecCC-CCCeEEEEEecCCCEEEEEe-CCCeEEE
Q 005342          542 ANPPPI-ATYFILLPQD-LFAFGF----DDSSILVHCPCTKK-TKAKLKGH-QNRITCLAYSLSLNVLVSSG-ADAQLCV  612 (701)
Q Consensus       542 ~~~~~~-i~~l~~spdg-~l~~gs----~dg~I~iwd~~~~~-~~~~l~~h-~~~V~~v~~spdg~~l~s~s-~D~~I~v  612 (701)
                      .+|... ...+.|.+++ .+++++    .|+.|++||+++.. .+.....+ ...+....|+|++++|++++ .|+.|++
T Consensus       207 ~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iri  286 (493)
T PTZ00421        207 EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRC  286 (493)
T ss_pred             ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence            888664 4577889888 555443    47899999998754 34433333 34566678999999998887 5999999


Q ss_pred             EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342          613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       613 wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd  648 (701)
                      ||+.+++....  ..   ..+.   .++.+++|.|.
T Consensus       287 wdl~~~~~~~~--~~---~~s~---~~~~g~~~~pk  314 (493)
T PTZ00421        287 FELMNERLTFC--SS---YSSV---EPHKGLCMMPK  314 (493)
T ss_pred             EEeeCCceEEE--ee---ccCC---CCCcceEeccc
Confidence            99999864332  11   1222   56788888885

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4e-24  Score=228.39  Aligned_cols=235  Identities=15%  Similarity=0.211  Sum_probs=181.8

Q ss_pred             CCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc----------------cccc----------cccce--------
Q 005342          439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ----------------SLEE----------ENVNM--------  484 (701)
Q Consensus       439 ~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~----------------~~g~----------~~~~~--------  484 (701)
                      .|.+.|+++.||+||+|||+||.||.|+||.+...+.                ..+.          .....        
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            6899999999999999999999999999999866221                0000          00000        


Q ss_pred             -eeEEeeCCCCeEEeec--ccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--
Q 005342          485 -ESQLYQPSSKLVMTND--IAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--  557 (701)
Q Consensus       485 -~i~~~d~~~~~~~~~~--~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--  557 (701)
                       ...+.+.....+..+.  ...+|.+.|.+++|| +++|++++ |.+|++|++....++..|. |...|+|++|+|-.  
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr  423 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR  423 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence             0001111111010000  114899999999999 99999999 9999999999999999998 99999999999977  


Q ss_pred             eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342          558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET  637 (701)
Q Consensus       558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~  637 (701)
                      ++++|+-||+|+||++...+++.-.. -..-|++++|.|||++.+.|+.+|.+++|+...-+......+. +..+.....
T Consensus       424 yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-~~~~Kk~~~  501 (712)
T KOG0283|consen  424 YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-LHNKKKKQG  501 (712)
T ss_pred             cEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe-eccCccccC
Confidence            99999999999999998887766444 3478999999999999999999999999999986655555554 222221112


Q ss_pred             CCeEEEEEcCCC--CEEEEEecCeEEEEECCCCceeeeeee
Q 005342          638 TIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       638 ~~v~~v~~spdg--~~l~sg~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ..|+++.|.|..  +.|+++.|..|+|+|.++..++..+.|
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG  542 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG  542 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc
Confidence            479999999864  378888999999999988888888887

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1e-23  Score=220.03  Aligned_cols=250  Identities=18%  Similarity=0.207  Sum_probs=207.4

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      .+-+.|+ ..+.+|.|.. ..|++|+..    .+....+.   ..+...|+++.|+++|.+|++|..+|.|.|||...  
T Consensus       180 ~nlldWs-s~n~laValg-~~vylW~~~----s~~v~~l~---~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~--  248 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVALG-QSVYLWSAS----SGSVTELC---SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE--  248 (484)
T ss_pred             hhHhhcc-cCCeEEEEec-ceEEEEecC----CCceEEeE---ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh--
Confidence            4457788 4456666655 689999987    56544433   12378999999999999999999999999997632  


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEE-ecCCCCCeEEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFI  552 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~  552 (701)
                                         .+.+.. +...|...|.+++|.+..+.+|+ |+.|..+|++..+.... +.+|...|+.+.
T Consensus       249 -------------------~k~~~~-~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLk  308 (484)
T KOG0305|consen  249 -------------------QKKTRT-LRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLK  308 (484)
T ss_pred             -------------------cccccc-ccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeE
Confidence                               222211 32238999999999988899999 99999999998765444 888999999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec-CCCEEEEEe--CCCeEEEEECCCCeeeeeeeeee
Q 005342          553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s--~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      |++|+ ++|+|+.|+.+.|||.....+...+..|...|.+++|+| ....||+|+  .|++|++||..+|..     +..
T Consensus       309 ws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-----i~~  383 (484)
T KOG0305|consen  309 WSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-----IDS  383 (484)
T ss_pred             ECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-----ecc
Confidence            99999 999999999999999988889999999999999999999 677999865  599999999999853     333


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEE--E-ecCeEEEEECCCCceeeeeee----eeEEEEEee
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~s--g-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~  685 (701)
                      +..+     +.|.++.|++..+-|++  | .++.|.||+..+.+.+..+.+    |-++++||+
T Consensus       384 vdtg-----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd  442 (484)
T KOG0305|consen  384 VDTG-----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD  442 (484)
T ss_pred             cccC-----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence            4444     77999999999887777  4 688999999999999999998    999999998

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.4e-23  Score=184.82  Aligned_cols=274  Identities=15%  Similarity=0.149  Sum_probs=207.6

Q ss_pred             ccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC-------ceeEee-cCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342          389 FNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-------ECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALT  460 (701)
Q Consensus       389 l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~-------~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s  460 (701)
                      |.....|.+++|+|.|.+.+.|+..++.+|..........       +...+. .....|.+.|.|.+|||+|..+++|+
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            4444449999999999999999999999987654321110       000001 12345889999999999999999999


Q ss_pred             CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec------CCEEEEEe--CCeEEEEeC
Q 005342          461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSL  532 (701)
Q Consensus       461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s------~~~l~s~s--dg~I~iwd~  532 (701)
                      .|.+|++..++...+              + .+|.-+.  + .-|.+.|..++|-      |..+++++  |..|++-|.
T Consensus       109 ndk~ik~l~fn~dt~--------------~-~~g~dle--~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc  170 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTC--------------N-ATGHDLE--F-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC  170 (350)
T ss_pred             CCceEEEEecccccc--------------c-ccCccee--e-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence            999999986633221              1 1122111  2 2588999999996      56778877  678899999


Q ss_pred             CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC--C-----CCCeEEEEEecCCCEEEEE
Q 005342          533 ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--H-----QNRITCLAYSLSLNVLVSS  604 (701)
Q Consensus       533 ~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~--h-----~~~V~~v~~spdg~~l~s~  604 (701)
                      .+|+..+.+.+|.+.|.++ ++-+| .+++|+.|.+|+.||++-...+.++..  |     .+.|.+++..|.|++|++|
T Consensus       171 ~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg  249 (350)
T KOG0641|consen  171 GRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG  249 (350)
T ss_pred             CCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence            9999999999999988765 45567 999999999999999998888877643  2     2579999999999999999


Q ss_pred             eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-------
Q 005342          605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-------  676 (701)
Q Consensus       605 s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-------  676 (701)
                      -.|....+||++.|+.+.  .+.    .|+   ..|.++.|||...+++++ .|..|++-|+ .|.+.+.++.       
T Consensus       250 ~~dssc~lydirg~r~iq--~f~----phs---adir~vrfsp~a~yllt~syd~~ikltdl-qgdla~el~~~vv~ehk  319 (350)
T KOG0641|consen  250 HADSSCMLYDIRGGRMIQ--RFH----PHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDL-QGDLAHELPIMVVAEHK  319 (350)
T ss_pred             cCCCceEEEEeeCCceee--eeC----CCc---cceeEEEeCCCceEEEEecccceEEEeec-ccchhhcCceEEEEecc
Confidence            999999999999986443  222    344   899999999999999996 8999999998 4655555554       


Q ss_pred             --eeEEEEEeeEEeeee
Q 005342          677 --ISHIMFVQIVVKFHS  691 (701)
Q Consensus       677 --i~~~~fs~~~~~f~~  691 (701)
                        +-.+.|-|-.++|.+
T Consensus       320 dk~i~~rwh~~d~sfis  336 (350)
T KOG0641|consen  320 DKAIQCRWHPQDFSFIS  336 (350)
T ss_pred             CceEEEEecCccceeee
Confidence              344555555555544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=5.5e-24  Score=212.20  Aligned_cols=255  Identities=17%  Similarity=0.261  Sum_probs=196.9

Q ss_pred             CCCc-eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCC----ceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCC
Q 005342          391 DNNQ-SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTA  463 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~----~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg  463 (701)
                      .|.+ |+.+.+-|... .+|+++..+.|.|||..+.....    .+.. .+...+|...-.+++|++... .+++++.|+
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~P-dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRP-DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCC-ceEEEeecccccccccccccceeEeeccCCC
Confidence            6778 99999988654 56677888999999987433221    1111 112346777788899998654 688999999


Q ss_pred             cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCC--CCcE
Q 005342          464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLE--TFQT  537 (701)
Q Consensus       464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~--~~~~  537 (701)
                      .+++||+.....                .+.....+....+|...|..++|+   ...+++++ |+.+.|||++  +.+.
T Consensus       201 ~i~lwdi~~~~~----------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~  264 (422)
T KOG0264|consen  201 TICLWDINAESK----------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP  264 (422)
T ss_pred             cEEEEecccccc----------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence            999999865421                111111111335899999999999   66788888 8999999999  5566


Q ss_pred             EEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEE
Q 005342          538 LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVW  613 (701)
Q Consensus       538 ~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vw  613 (701)
                      .+...+|...+.|++|+|-+  .||+|+.|++|.+||+++. +.+.++.+|...|.+|.|||+ ...|||++.|+.+.||
T Consensus       265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW  344 (422)
T KOG0264|consen  265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW  344 (422)
T ss_pred             cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence            77778899999999999988  9999999999999999984 568899999999999999995 5689999999999999


Q ss_pred             ECCCC-eeee--------eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC
Q 005342          614 DAVGW-KKLC--------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP  666 (701)
Q Consensus       614 d~~~g-~~~~--------~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~  666 (701)
                      |+..- +...        ...+- +-+||.   ..|..+.|+|+..+++++  .|+.+.||++.
T Consensus       345 Dls~ig~eq~~eda~dgppEllF-~HgGH~---~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  345 DLSRIGEEQSPEDAEDGPPELLF-IHGGHT---AKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             eccccccccChhhhccCCcceeE-EecCcc---cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            99762 2111        11122 334665   999999999999988875  79999999985

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.92  E-value=2.7e-22  Score=201.39  Aligned_cols=313  Identities=14%  Similarity=0.117  Sum_probs=234.7

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-----------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL  375 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (701)
                      ..+++||..+-..++.+..-...|.  |++||+.           +.+..+.+||++.+......               
T Consensus       134 phvriWdsv~L~TL~V~g~f~~GV~--~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v---------------  196 (626)
T KOG2106|consen  134 PHVRIWDSVTLSTLHVIGFFDRGVT--CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV---------------  196 (626)
T ss_pred             Ceeeecccccceeeeeeccccccce--eeeecccCCCceEEEecCCCccccchhhchhhhccCcc---------------
Confidence            6789999999999999987778899  9999987           88889999999887655441               


Q ss_pred             ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCC-CCCCCCEEEEEEecCC
Q 005342          376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSHSG  453 (701)
Q Consensus       376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-~~~~~~v~~l~~spdg  453 (701)
                                    +.-+. |....|+|.+..++.....+.+..|+..    ++...+-.-.+ ......|.|++|.++|
T Consensus       197 --------------k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~----~~~l~k~~~~fek~ekk~Vl~v~F~eng  258 (626)
T KOG2106|consen  197 --------------KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR----GGSLVKRQGIFEKREKKFVLCVTFLENG  258 (626)
T ss_pred             --------------eeccceEEEEEeccCCCcEEEEeCCceEEEEEcc----CCceEEEeeccccccceEEEEEEEcCCC
Confidence                          11223 7789999987766655555999999987    44433322112 2234779999999999


Q ss_pred             CEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEe
Q 005342          454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFS  531 (701)
Q Consensus       454 ~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd  531 (701)
                      . +++|.++|.|.||+.                     .+.++... .. .|.+.|.+++.- +..|++|+ |..|..||
T Consensus       259 d-viTgDS~G~i~Iw~~---------------------~~~~~~k~-~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd  314 (626)
T KOG2106|consen  259 D-VITGDSGGNILIWSK---------------------GTNRISKQ-VH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWD  314 (626)
T ss_pred             C-EEeecCCceEEEEeC---------------------CCceEEeE-ee-ecCCceEEEEEecCccEeecCccceEEecc
Confidence            8 689999999999943                     44444433 22 699999999998 66777788 99999998


Q ss_pred             CCCCcEE------------E-----------------------------EecCCCCCeEEEEEcCCC-eEEEEeCCCcEE
Q 005342          532 LETFQTL------------A-----------------------------TFANPPPIATYFILLPQD-LFAFGFDDSSIL  569 (701)
Q Consensus       532 ~~~~~~~------------~-----------------------------~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~  569 (701)
                      -. -+.+            +                             ...+|......++.+|+. ++++++.|+.++
T Consensus       315 ~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~  393 (626)
T KOG2106|consen  315 DN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVR  393 (626)
T ss_pred             cc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEE
Confidence            32 1111            1                             112566677889999999 999999999999


Q ss_pred             EEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342          570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ  649 (701)
Q Consensus       570 iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg  649 (701)
                      +|+  ..+++-+.. -..++.++.|+|.| .+|.|+..|...|.|.++...+.   ++   .. .   .+++.++|+|+|
T Consensus       394 lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~---~~---~d-~---~~ls~v~ysp~G  459 (626)
T KOG2106|consen  394 LWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT---IH---TD-N---EQLSVVRYSPDG  459 (626)
T ss_pred             Ecc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE---EE---ec-C---CceEEEEEcCCC
Confidence            999  344443322 34678999999999 99999999999999999853222   22   12 2   889999999999


Q ss_pred             CEEEEE-ecCeEEEEECCC-Cceeeee---ee--eeEEEEEeeEEeeeecc
Q 005342          650 IHLLSI-HEGQIDVYEAPT-LNHTSQV---LL--ISHIMFVQIVVKFHSFK  693 (701)
Q Consensus       650 ~~l~sg-~Dg~I~iwd~~~-g~~~~~l---~~--i~~~~fs~~~~~f~~~~  693 (701)
                      .+||.| .|+.|+||-+.. |......   .+  |+++.||++...+.+..
T Consensus       460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S  510 (626)
T KOG2106|consen  460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS  510 (626)
T ss_pred             CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence            999997 899999999965 4433322   22  99999999877665544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=1.4e-23  Score=229.67  Aligned_cols=284  Identities=15%  Similarity=0.138  Sum_probs=214.5

Q ss_pred             CCCc--eEEEEEcCCCCeEEEEc--CCCcEEEEeccccCCCCc-----eeEeecCCCCCCCCEEEEEEecCCCEEEEEEC
Q 005342          391 DNNQ--SRESTSLPDADSAVCAK--SLEKSVNLKLQLINEPSE-----CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ  461 (701)
Q Consensus       391 ~h~~--V~~l~~spdg~~l~s~s--~d~~v~iw~~~~~~~~~~-----~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~  461 (701)
                      +|..  |.++..+|||..+|||+  .|+.++||+.+......+     ..........|.+.|.|+.|+|||++||+||.
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            4554  89999999999999999  999999999763221111     01111122468999999999999999999999


Q ss_pred             CCcEEEEecCCCCc--cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc
Q 005342          462 TATHKLWKWQSNKQ--SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ  536 (701)
Q Consensus       462 dg~i~vwd~~~~~~--~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~  536 (701)
                      |+.|.||.......  ..|......     +.+.-+.+.. + .+|...|.+++|+  +.++++++ |++|.+||..+++
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~-----~vE~wk~~~~-l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~  162 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAK-----NVESWKVVSI-L-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE  162 (942)
T ss_pred             cceEEEeeecccCCccccccccccc-----ccceeeEEEE-E-ecCCCccceeccCCCccEEEEecccceEEEEccccce
Confidence            99999998763100  111100000     2222233322 3 4799999999999  99999999 9999999999999


Q ss_pred             EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC------CCeEEEEEecCCCEEEEEe----
Q 005342          537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ------NRITCLAYSLSLNVLVSSG----  605 (701)
Q Consensus       537 ~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~------~~V~~v~~spdg~~l~s~s----  605 (701)
                      .+.++.+|.+.|-.+.|+|-| ++|+-+.|++|++|+..+....+.+.++-      ..+..+.|||||++|++.-    
T Consensus       163 ~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~  242 (942)
T KOG0973|consen  163 LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG  242 (942)
T ss_pred             eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence            999999999999999999999 99999999999999987776776665532      3678999999999999853    


Q ss_pred             CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-----CC------------EEEEE-ecCeEEEEECCC
Q 005342          606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QI------------HLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       606 ~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-----g~------------~l~sg-~Dg~I~iwd~~~  667 (701)
                      .-.++.|.+..+++  ....+-    ||.   .++.++.|+|.     .+            .+|+| .|++|.||....
T Consensus       243 ~~~~~~IieR~tWk--~~~~Lv----GH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  243 GKSTIAIIERGTWK--VDKDLV----GHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             CcceeEEEecCCce--eeeeee----cCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            34578888887653  122222    665   89999999983     11            34455 899999999987


Q ss_pred             Cceeeeeee-----eeEEEEEeeEEeee
Q 005342          668 LNHTSQVLL-----ISHIMFVQIVVKFH  690 (701)
Q Consensus       668 g~~~~~l~~-----i~~~~fs~~~~~f~  690 (701)
                      .+++-.+..     |..++|||+....+
T Consensus       314 ~RPl~vi~~lf~~SI~DmsWspdG~~Lf  341 (942)
T KOG0973|consen  314 PRPLFVIHNLFNKSIVDMSWSPDGFSLF  341 (942)
T ss_pred             CCchhhhhhhhcCceeeeeEcCCCCeEE
Confidence            777655544     99999999876653

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=2.3e-22  Score=218.74  Aligned_cols=248  Identities=8%  Similarity=-0.023  Sum_probs=178.0

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVN  418 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~i  418 (701)
                      +.++.+++|+..+...+..                             +.+|.. |.+++|+|+ +.+||+|+.|++|++
T Consensus        51 G~~gvI~L~~~~r~~~v~~-----------------------------L~gH~~~V~~lafsP~~~~lLASgS~DgtIrI  101 (568)
T PTZ00420         51 GLIGAIRLENQMRKPPVIK-----------------------------LKGHTSSILDLQFNPCFSEILASGSEDLTIRV  101 (568)
T ss_pred             CceeEEEeeecCCCceEEE-----------------------------EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Confidence            5678888888765433322                             457888 999999997 789999999999999


Q ss_pred             EeccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEE-EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeE
Q 005342          419 LKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV  496 (701)
Q Consensus       419 w~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l-~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~  496 (701)
                      |++.+.... ...........+|...|.+++|+|++..+ ++++.|+.|++||+                     .+++.
T Consensus       102 WDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl---------------------~tg~~  160 (568)
T PTZ00420        102 WEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI---------------------ENEKR  160 (568)
T ss_pred             EECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC---------------------CCCcE
Confidence            999732110 00000000234688999999999999865 68889999999966                     44443


Q ss_pred             EeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEE-----EEEcCCC-eEEEEeCCC-
Q 005342          497 MTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY-----FILLPQD-LFAFGFDDS-  566 (701)
Q Consensus       497 ~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~-----l~~spdg-~l~~gs~dg-  566 (701)
                      ... +  .|...|.+++|+  |.+|++++ |+.|++||+++++.+.++.+|.+.+.+     ..|++++ ++++++.|+ 
T Consensus       161 ~~~-i--~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~  237 (568)
T PTZ00420        161 AFQ-I--NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN  237 (568)
T ss_pred             EEE-E--ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence            221 2  245689999999  88999888 999999999999999999999876533     2346888 888877664 


Q ss_pred             ---cEEEEeCCC-CceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342          567 ---SILVHCPCT-KKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV  640 (701)
Q Consensus       567 ---~I~iwd~~~-~~~~~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v  640 (701)
                         .|+|||+++ ++++..+..  +.+.+......++|.++++|+.|++|++|++..+..   ..+.   ..+.  ..++
T Consensus       238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~---~~l~---~~~s--~~p~  309 (568)
T PTZ00420        238 NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI---RKVN---EYKS--CSPF  309 (568)
T ss_pred             CccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE---Eeec---cccc--CCCc
Confidence               799999995 556655443  333333333345688999999999999999988642   2232   1221  2778


Q ss_pred             EEEEEcCCC
Q 005342          641 NHIQFHPDQ  649 (701)
Q Consensus       641 ~~v~~spdg  649 (701)
                      .+++|.|+.
T Consensus       310 ~g~~f~Pkr  318 (568)
T PTZ00420        310 RSFGFLPKQ  318 (568)
T ss_pred             cceEEcccc
Confidence            899999974

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.4e-23  Score=199.02  Aligned_cols=291  Identities=13%  Similarity=0.108  Sum_probs=227.8

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      ++++.+.+|.+.||  .++-...       +.|.+.+||.+++|.|+...                             .
T Consensus       139 ~lvre~~GHkDGiW--~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-----------------------------~  187 (481)
T KOG0300|consen  139 RLVRELEGHKDGIW--HVAADSTQPICGTASADHTARIWSLESGACLATY-----------------------------T  187 (481)
T ss_pred             eehhhhccccccee--eehhhcCCcceeecccccceeEEeeccccceeee-----------------------------c
Confidence            56677899999999  7665443       89999999999999998872                             4


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEec------cccCCC------------------------CceeEee---cC
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKL------QLINEP------------------------SECRTLL---LP  436 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~------~~~~~~------------------------~~~~~l~---~~  436 (701)
                      ||.+ |+++.|+|.+.++++++.|++..||..      .....+                        ..-..+.   ..
T Consensus       188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~  267 (481)
T KOG0300|consen  188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR  267 (481)
T ss_pred             ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence            7778 999999999999999999999999972      211000                        0001122   22


Q ss_pred             CCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-
Q 005342          437 DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-  515 (701)
Q Consensus       437 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-  515 (701)
                      +.+|...|.+..|...|+.+++++.|.+..+||+                     ++|.++.  +..+|....+.++-. 
T Consensus       268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDV---------------------Etge~v~--~LtGHd~ELtHcstHp  324 (481)
T KOG0300|consen  268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDV---------------------ETGEVVN--ILTGHDSELTHCSTHP  324 (481)
T ss_pred             eeccccceEehhhhcCcceeeeeeccccceeeee---------------------ccCceec--cccCcchhccccccCC
Confidence            3578899999999999999999999999999955                     6677664  336888888877777 


Q ss_pred             -CCEEEEEe-CCeEEEEeCCCC-cEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEE
Q 005342          516 -GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITC  591 (701)
Q Consensus       516 -~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~  591 (701)
                       .+.+++.+ |.+.++||++.. ..+..|+||...|+++.|..+..+++|++|.+|++||+++. .++.+++ -.++++.
T Consensus       325 tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NR  403 (481)
T KOG0300|consen  325 TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANR  403 (481)
T ss_pred             cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccce
Confidence             55666777 999999999754 46788999999999999998889999999999999999875 4566666 5678999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC---CCEEEEEecCeEEEEECCCC
Q 005342          592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLSIHEGQIDVYEAPTL  668 (701)
Q Consensus       592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd---g~~l~sg~Dg~I~iwd~~~g  668 (701)
                      ++.+..++.+|.--++..|++||+...+... .+ ++-..+|.   ..|.|++|..+   .+++-+|.|..+.-|.+.+-
T Consensus       404 vavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-lP-rtsRqgHr---RMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  404 VAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-LP-RTSRQGHR---RMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             eEeecCCceEEeccCCceEEEEecCCCcccc-CC-cccccccc---eeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            9999988899988889999999998754221 11 11223554   88999999865   34455578999999998653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=5.7e-23  Score=202.93  Aligned_cols=261  Identities=16%  Similarity=0.140  Sum_probs=210.1

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNL  419 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw  419 (701)
                      +.|.++.++|..+++.+..                             |+||.. |..+.|+|+...+++++.|..|++|
T Consensus       238 G~d~~av~~d~~s~q~l~~-----------------------------~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vw  288 (506)
T KOG0289|consen  238 GEDKTAVLFDKPSNQILAT-----------------------------LKGHTKKITSVKFHKDLDTVITASADEIIRVW  288 (506)
T ss_pred             CCCCceEEEecchhhhhhh-----------------------------ccCcceEEEEEEeccchhheeecCCcceEEee
Confidence            6788888888887776666                             356777 9999999999999999999999999


Q ss_pred             eccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee
Q 005342          420 KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN  499 (701)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~  499 (701)
                      ...    ...+...   ...|..+|+.+..+|.|.||++++.||+..+.|+                     .+|..+..
T Consensus       289 s~~----~~s~~~~---~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~---------------------~~g~~lt~  340 (506)
T KOG0289|consen  289 SVP----LSSEPTS---SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI---------------------SSGSQLTV  340 (506)
T ss_pred             ccc----cccCccc---cccccccceeeeeccCCcEEEEecCCceEEEEEc---------------------cCCcEEEE
Confidence            987    3333331   2348999999999999999999999999998855                     55554433


Q ss_pred             cccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC
Q 005342          500 DIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT  575 (701)
Q Consensus       500 ~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~  575 (701)
                      .......-.+++.+|+  |..+.+|. ||.+++||+..+..+..|.+|.++|..++|+.+| +++++++|+.|++||++.
T Consensus       341 vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK  420 (506)
T KOG0289|consen  341 VSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK  420 (506)
T ss_pred             EeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence            2212233468899999  77778888 9999999999999999999999999999999999 999999999999999998


Q ss_pred             CceEEeecCC-CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          576 KKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       576 ~~~~~~l~~h-~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      .+..+++.-. ..+|.++.|.+.|.+|+.++.|=+|++++-.+..-.+...+.    .|.   +..+++.|....+++++
T Consensus       421 l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~----~~s---g~st~v~Fg~~aq~l~s  493 (506)
T KOG0289|consen  421 LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA----DHS---GLSTGVRFGEHAQYLAS  493 (506)
T ss_pred             hcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh----hcc---cccceeeecccceEEee
Confidence            8877777642 237999999999999999988888888876553322222222    443   67899999999999998


Q ss_pred             E-ecCeEEEEEC
Q 005342          655 I-HEGQIDVYEA  665 (701)
Q Consensus       655 g-~Dg~I~iwd~  665 (701)
                      + .|..++++.+
T Consensus       494 ~smd~~l~~~a~  505 (506)
T KOG0289|consen  494 TSMDAILRLYAL  505 (506)
T ss_pred             ccchhheEEeec
Confidence            5 7888887754

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=2e-23  Score=216.86  Aligned_cols=319  Identities=20%  Similarity=0.210  Sum_probs=222.8

Q ss_pred             CcccccccCcccee---EEEeecCcceeeeEEEEcc-C-----------------CCCCeEEEEeccCCcccccc-----
Q 005342          307 DKLKFPSMDKSRLL---SLIKQIMDWWVPYCINVMP-N-----------------ANNETISLKDFPTVSNLRYA-----  360 (701)
Q Consensus       307 ~~i~iwd~~~~~~~---~~l~~h~~~v~~~~l~fsp-d-----------------s~d~~i~lWd~~~~~~~~~~-----  360 (701)
                      +.+.+||+..-+.+   ...--|...||  .+.--| +                 +.|+||++||+..+..-..+     
T Consensus       346 hSlYvWDvrD~~kvgk~~s~lyHS~ciW--~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil  423 (1080)
T KOG1408|consen  346 HSLYVWDVRDVNKVGKCSSMLYHSACIW--DVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL  423 (1080)
T ss_pred             ceEEEEeccccccccceeeeeeccceee--eeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence            67788887543221   22334666666  655444 1                 89999999999874432221     


Q ss_pred             ccccCCCCCCCCCCc---ccccC--CCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee
Q 005342          361 SSILTDKPNQEGRPL---DASSG--DDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL  434 (701)
Q Consensus       361 ~~~~~~~~~~~~~~~---~~s~~--D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~  434 (701)
                      +.-+.+-.-..+...   .++.+  |.. ... .-+... +++++.+|+|++||+|..-|+++++++.+....-      
T Consensus       424 s~~l~ki~y~d~~~q~~~d~~~~~fdka-~~s-~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~------  495 (1080)
T KOG1408|consen  424 SANLSKIPYEDSTQQIMHDASAGIFDKA-LVS-TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC------  495 (1080)
T ss_pred             hhhhhcCccccCchhhhhhccCCccccc-chh-hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh------
Confidence            000000000000000   00000  111 111 223334 9999999999999999999999999997432211      


Q ss_pred             cCCCCCCCCEEEEEEecC---CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEE
Q 005342          435 LPDNSFGGRVVRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC  511 (701)
Q Consensus       435 ~~~~~~~~~v~~l~~spd---g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~  511 (701)
                       ....|...|.|+.||..   .+.|++++.|.-|.|||+..+               |+     ++ ..+ .+|...|++
T Consensus       496 -~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---------------y~-----l~-qtl-d~HSssITs  552 (1080)
T KOG1408|consen  496 -FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---------------YD-----LV-QTL-DGHSSSITS  552 (1080)
T ss_pred             -heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---------------cc-----hh-hhh-cccccceeE
Confidence             23469999999999853   468899999999999976332               11     11 113 479999999


Q ss_pred             EEec--C--CEEEEEe-CCeEEEEeCCCCcEEEEecCC-----CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE
Q 005342          512 FALR--G--SHLFSAS-GGKISIFSLETFQTLATFANP-----PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA  580 (701)
Q Consensus       512 l~~s--~--~~l~s~s-dg~I~iwd~~~~~~~~~~~~~-----~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~  580 (701)
                      +.|-  |  ..+++++ |..|.+=-.+.......+..|     ...++.+++.|.. ++++++.|..|+|||+.+++..+
T Consensus       553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k  632 (1080)
T KOG1408|consen  553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK  632 (1080)
T ss_pred             EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence            9998  3  4677777 877765433322222222222     4567999999999 99999999999999999999999


Q ss_pred             eecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-Ee
Q 005342          581 KLKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH  656 (701)
Q Consensus       581 ~l~~---h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~  656 (701)
                      .|+|   |.+....+...|.|.|+|+.+.|.++.++|..+|+.+  ..    ..||.   ..|+.+.|.+|-++|++ +.
T Consensus       633 ~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv--A~----m~GHs---E~VTG~kF~nDCkHlISvsg  703 (1080)
T KOG1408|consen  633 SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV--AQ----MTGHS---EAVTGVKFLNDCKHLISVSG  703 (1080)
T ss_pred             eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh--hh----hcCcc---hheeeeeecccchhheeecC
Confidence            9987   6678888999999999999999999999999998733  22    23776   89999999999999998 59


Q ss_pred             cCeEEEEECCC
Q 005342          657 EGQIDVYEAPT  667 (701)
Q Consensus       657 Dg~I~iwd~~~  667 (701)
                      ||.|.||.+..
T Consensus       704 DgCIFvW~lp~  714 (1080)
T KOG1408|consen  704 DGCIFVWKLPL  714 (1080)
T ss_pred             CceEEEEECch
Confidence            99999999853

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.4e-23  Score=208.98  Aligned_cols=255  Identities=15%  Similarity=0.173  Sum_probs=203.7

Q ss_pred             cCCCceEEEEEcCCCCe-EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQSRESTSLPDADS-AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~V~~l~~spdg~~-l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      +.|..|.+++|+|...+ +|+++. -.+.+|+..    +....+   .+......|.++.|-.||+.+++|...|.|+++
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~----~~~~~k---~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vf   95 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSV----TRSVRK---TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVF   95 (487)
T ss_pred             cccCcceeEecCCCCCCceEEecc-cEEEEEecc----hhhhhh---hHHhhccceeEEEeecCCeEEEccCCcCcEEEe
Confidence            45666999999996543 444443 578899876    322222   112246789999999999999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      |.                     .+...+. .+ ..|..++..+.|+   +..+++|+ |+.+++||+.+......+.+|
T Consensus        96 D~---------------------k~r~iLR-~~-~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h  152 (487)
T KOG0310|consen   96 DM---------------------KSRVILR-QL-YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH  152 (487)
T ss_pred             cc---------------------ccHHHHH-HH-hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence            64                     2222221 12 4799999999999   66788888 789999999988876688999


Q ss_pred             CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          545 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       545 ~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      ...|.|.+++|..  .+++|+.||.|++||.++. ..+.++. |..+|.++.+-|.|..+|+++. +.|+|||+.+|.+ 
T Consensus       153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~q-  229 (487)
T KOG0310|consen  153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQ-  229 (487)
T ss_pred             cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCce-
Confidence            9999999999987  8999999999999999987 6677776 8899999999999999999886 5899999997742 


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~  685 (701)
                         .+.....|+    ..|+|+.+..++..|++| -|+.+++||+.+-+.+..+.-   |-+++.||+
T Consensus       230 ---ll~~~~~H~----KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d  290 (487)
T KOG0310|consen  230 ---LLTSMFNHN----KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD  290 (487)
T ss_pred             ---ehhhhhccc----ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCC
Confidence               222122233    899999999999999986 799999999988888887765   999999884

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=1.1e-22  Score=215.62  Aligned_cols=334  Identities=16%  Similarity=0.183  Sum_probs=242.8

Q ss_pred             CcccccccCcc-ce----eEEEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCC
Q 005342          307 DKLKFPSMDKS-RL----LSLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEG  372 (701)
Q Consensus       307 ~~i~iwd~~~~-~~----~~~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~  372 (701)
                      +.+.||+...+ +.    +...+...+.|.  ++. +|.         +.+|.+.+||+.+++.+.+          +  
T Consensus       134 ~~l~vw~~s~~~~e~~l~~~~~~~~~~~It--al~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~----------f--  198 (910)
T KOG1539|consen  134 NILFVWKTSSIQEELYLQSTFLKVEGDFIT--ALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYT----------F--  198 (910)
T ss_pred             CcEEEEEeccccccccccceeeeccCCcee--eEe-cchhheeeEEEeecCCcEEEEEeccCcEEEE----------e--
Confidence            88889998773 11    233344444466  553 454         8899999999999998887          3  


Q ss_pred             CCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec
Q 005342          373 RPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH  451 (701)
Q Consensus       373 ~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp  451 (701)
                                       +++.. |+++.=+|--..+|.|..+|+|.++++.    .++...   .+....++|++++|.-
T Consensus       199 -----------------~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK----~dkil~---sFk~d~g~VtslSFrt  254 (910)
T KOG1539|consen  199 -----------------QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK----FDKILM---SFKQDWGRVTSLSFRT  254 (910)
T ss_pred             -----------------cccccceeEeccCCcceEEEEeccCceEEEEEcc----cCcEEE---EEEccccceeEEEecc
Confidence                             24445 8999999999999999999999999998    554433   2222358999999999


Q ss_pred             CCCEEE-EEECCCcEEEEecCCCCc-------ccc----------cc-------ccceeeEEeeCCCCe--EEeecccCC
Q 005342          452 SGDFLV-ALTQTATHKLWKWQSNKQ-------SLE----------EE-------NVNMESQLYQPSSKL--VMTNDIAAD  504 (701)
Q Consensus       452 dg~~l~-s~s~dg~i~vwd~~~~~~-------~~g----------~~-------~~~~~i~~~d~~~~~--~~~~~~~~~  504 (701)
                      ||..+. +|+..|.+.+||++....       ..|          ..       ..+..+.++|...|-  ++.  .+.+
T Consensus       255 DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR--~R~G  332 (910)
T KOG1539|consen  255 DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLR--SRGG  332 (910)
T ss_pred             CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhee--eccC
Confidence            998655 455579999999987765       101          11       012224555544442  222  4457


Q ss_pred             CCCCeEEEEec---CCEEEEEe-CCeEEEEeC------------------------------------------------
Q 005342          505 PKDSISCFALR---GSHLFSAS-GGKISIFSL------------------------------------------------  532 (701)
Q Consensus       505 ~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~------------------------------------------------  532 (701)
                      |..+..|+.|-   |..+.+++ |++.+.+++                                                
T Consensus       333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~  412 (910)
T KOG1539|consen  333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD  412 (910)
T ss_pred             CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence            77777777776   66666666 766665543                                                


Q ss_pred             -----------------CCCcE-EEEec-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee---cCC
Q 005342          533 -----------------ETFQT-LATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGH  585 (701)
Q Consensus       533 -----------------~~~~~-~~~~~-----~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l---~~h  585 (701)
                                       ++... .+.+.     .....+++++.++.| +.+.|+..|.|-+|++.+|-....+   ..|
T Consensus       413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah  492 (910)
T KOG1539|consen  413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH  492 (910)
T ss_pred             ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence                             21111 01111     112567899999999 9999999999999999999888888   469


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee------------------------------------eeeeec
Q 005342          586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS------------------------------------KFLHSF  629 (701)
Q Consensus       586 ~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~------------------------------------~~l~~~  629 (701)
                      .++|+.++....++.++|++.+|.+++||.+.......                                    +..+ .
T Consensus       493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR-~  571 (910)
T KOG1539|consen  493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR-E  571 (910)
T ss_pred             cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH-H
Confidence            99999999998899999999999999999987542210                                    0011 1


Q ss_pred             cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342          630 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       630 ~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~  685 (701)
                      ..||.   +.|+.++|||||++|+++ .|++|++||+.+|.++..+..   .+++.|||-
T Consensus       572 f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn  628 (910)
T KOG1539|consen  572 FWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN  628 (910)
T ss_pred             hhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence            12444   999999999999999995 899999999999999887765   788888874

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.4e-23  Score=207.79  Aligned_cols=283  Identities=16%  Similarity=0.164  Sum_probs=213.3

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG  380 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  380 (701)
                      ..+.+||+.+|....++++........+-+..+.      .....+.+|.+........               .     
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q---------------~-----   77 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQ---------------Y-----   77 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhh---------------h-----
Confidence            4578999999999988887533222112222322      3334777787754433221               0     


Q ss_pred             CCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE
Q 005342          381 DDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL  459 (701)
Q Consensus       381 D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~  459 (701)
                             +  --++ |.+++-+|+|.+|+.|+-.|.+++|.+.    +|....   ....|-..|+|+.|+-||.+|++|
T Consensus        78 -------~--v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels----sG~LL~---v~~aHYQ~ITcL~fs~dgs~iiTg  141 (476)
T KOG0646|consen   78 -------I--VLPGPVHALASSNLGYFLLAGTISGNLYLWELS----SGILLN---VLSAHYQSITCLKFSDDGSHIITG  141 (476)
T ss_pred             -------c--ccccceeeeecCCCceEEEeecccCcEEEEEec----cccHHH---HHHhhccceeEEEEeCCCcEEEec
Confidence                   0  1123 8899999999999999999999999998    776554   334689999999999999999999


Q ss_pred             ECCCcEEEEecCCCCccccccccceeeEEeeCCCC-e--EEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEe
Q 005342          460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-L--VMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFS  531 (701)
Q Consensus       460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~-~--~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd  531 (701)
                      |.||.|.+|.+..               +.+.... .  .... + ..|.-+|+++.+.    ..++++++ |.++++||
T Consensus       142 skDg~V~vW~l~~---------------lv~a~~~~~~~p~~~-f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd  204 (476)
T KOG0646|consen  142 SKDGAVLVWLLTD---------------LVSADNDHSVKPLHI-F-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD  204 (476)
T ss_pred             CCCccEEEEEEEe---------------ecccccCCCccceee-e-ccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence            9999999998722               2232222 1  1211 2 4789999999998    45899999 99999999


Q ss_pred             CCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC----------------CceEEeecCCCC--CeEEE
Q 005342          532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT----------------KKTKAKLKGHQN--RITCL  592 (701)
Q Consensus       532 ~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~----------------~~~~~~l~~h~~--~V~~v  592 (701)
                      +..+..+.++. .+..+.+++.+|.+ .+++|+.+|.|.+.++..                +..+..+.||.+  .|+|+
T Consensus       205 lS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL  283 (476)
T KOG0646|consen  205 LSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL  283 (476)
T ss_pred             eccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence            99999988887 67789999999999 999999999999987643                234667889988  99999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE
Q 005342          593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  652 (701)
Q Consensus       593 ~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l  652 (701)
                      +.+-||..|++|+.||+|+|||+.+..     .++++.. ..   ++|+.+.+.|-.+-.
T Consensus       284 ais~DgtlLlSGd~dg~VcvWdi~S~Q-----~iRtl~~-~k---gpVtnL~i~~~~~~~  334 (476)
T KOG0646|consen  284 AISTDGTLLLSGDEDGKVCVWDIYSKQ-----CIRTLQT-SK---GPVTNLQINPLERGI  334 (476)
T ss_pred             EEecCccEEEeeCCCCCEEEEecchHH-----HHHHHhh-hc---cccceeEeeccccce
Confidence            999999999999999999999999843     2332221 22   889999987654333

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=1.2e-22  Score=211.42  Aligned_cols=367  Identities=14%  Similarity=0.124  Sum_probs=250.4

Q ss_pred             ceeEEEeecCcceeeeEEEEccC----------CCCCeEEEEeccCCcccccc-----ccccCCCCCCCCCCcccccCCC
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN----------ANNETISLKDFPTVSNLRYA-----SSILTDKPNQEGRPLDASSGDD  382 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd----------s~d~~i~lWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~s~~D~  382 (701)
                      +.+..+.+|+++|.  .++|+.-          |.|..||||.+.-+......     ...+.+++.+..-..+--+   
T Consensus       182 ~~v~el~GH~DWIr--sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~---  256 (764)
T KOG1063|consen  182 ARVAELEGHTDWIR--SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYR---  256 (764)
T ss_pred             eEEEEeeccchhhh--hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEE---
Confidence            56778999999999  9999764          89999999998655422210     0111111111110000000   


Q ss_pred             CCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE--eecC-CCCCCCCEEEEEEecCCCEEEE
Q 005342          383 SNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT--LLLP-DNSFGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       383 ~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~--l~~~-~~~~~~~v~~l~~spdg~~l~s  458 (701)
                      -.-...+.||.+ |.++.|+|.+..|.+++.|.++.+|...+.  +| ++.  +.+- ..+....-....|+|+++.+++
T Consensus       257 is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~--tG-iWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~  333 (764)
T KOG1063|consen  257 ISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDEN--TG-IWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA  333 (764)
T ss_pred             EehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCc--cc-eEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence            000112679999 999999999999999999999999998631  12 222  1221 1234566889999999999999


Q ss_pred             EECCCcEEEEecCCCCc-----cccccccceeeEEeeCCCCeEEee-------cc--------------cCCCCCCeEEE
Q 005342          459 LTQTATHKLWKWQSNKQ-----SLEEENVNMESQLYQPSSKLVMTN-------DI--------------AADPKDSISCF  512 (701)
Q Consensus       459 ~s~dg~i~vwd~~~~~~-----~~g~~~~~~~i~~~d~~~~~~~~~-------~~--------------~~~~~~~v~~l  512 (701)
                      -+..|..++|.......     ..+.+...+.-..|++....+++.       .+              ++.|...++|+
T Consensus       334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~  413 (764)
T KOG1063|consen  334 HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL  413 (764)
T ss_pred             ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence            99999999998222111     333444455556677655444331       01              12366778888


Q ss_pred             Eec--CCEEEEEe-CCeEEEEeCCC----------C---------------------------------cE----E----
Q 005342          513 ALR--GSHLFSAS-GGKISIFSLET----------F---------------------------------QT----L----  538 (701)
Q Consensus       513 ~~s--~~~l~s~s-dg~I~iwd~~~----------~---------------------------------~~----~----  538 (701)
                      ++-  ...+++|. ...+|+|+...          +                                 ..    .    
T Consensus       414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~  493 (764)
T KOG1063|consen  414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL  493 (764)
T ss_pred             ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence            887  44566666 47778886531          0                                 00    0    


Q ss_pred             -------------------------EEecCCCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEEeecCCCC
Q 005342          539 -------------------------ATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAKLKGHQN  587 (701)
Q Consensus       539 -------------------------~~~~~~~~~i~~l~~spdg-~l~~gs~dg-----~I~iwd~~~~~~~~~l~~h~~  587 (701)
                                               +++.||...|++++.+|+| ++|+++...     .|++|+..+-..++.+.+|.-
T Consensus       494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL  573 (764)
T KOG1063|consen  494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL  573 (764)
T ss_pred             ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce
Confidence                                     1222788899999999999 999988765     699999999888889999999


Q ss_pred             CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       588 ~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                      .|+.++|||||++|++.|.|.++.+|....+.... ..+.. ...|+   ..|+.+.|+|++.+++++ .|.+|+||...
T Consensus       574 TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-~~fa~-~k~Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  574 TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-FRFAC-LKAHT---RIIWDCSWSPDEKYFATASRDKKVKVWEEP  648 (764)
T ss_pred             EEEEEEECCCCcEEEEeecCceEEeeeeecccchh-hhhcc-ccccc---eEEEEcccCcccceeEEecCCceEEEEecc
Confidence            99999999999999999999999999986643221 11221 22444   789999999999999995 89999999998


Q ss_pred             CC--ceeeeeee------eeEEEEEeeEEeeeecceEEEEeC
Q 005342          667 TL--NHTSQVLL------ISHIMFVQIVVKFHSFKFFYVAVG  700 (701)
Q Consensus       667 ~g--~~~~~l~~------i~~~~fs~~~~~f~~~~~~~~~~~  700 (701)
                      .+  +.+..+..      |+.++|-|...   --+-..||+|
T Consensus       649 ~~~d~~i~~~a~~~~~~aVTAv~~~~~~~---~e~~~~vavG  687 (764)
T KOG1063|consen  649 DLRDKYISRFACLKFSLAVTAVAYLPVDH---NEKGDVVAVG  687 (764)
T ss_pred             CchhhhhhhhchhccCCceeeEEeecccc---ccccceEEEE
Confidence            87  44444222      88888865432   2233355555

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=8.7e-24  Score=194.14  Aligned_cols=245  Identities=14%  Similarity=0.167  Sum_probs=190.7

Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec--CCCEEEEEECCCcEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHK  466 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp--dg~~l~s~s~dg~i~  466 (701)
                      ..|.+ |..+...--|+.||||+.|++|+|+.+..   .++ ..+-..+.+|.++|+.++|..  -|..|++++.||.|.
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~---n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRN---NGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcC---CCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            36777 88888888899999999999999999974   232 122235578999999999976  799999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCC---cEE
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETF---QTL  538 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~---~~~  538 (701)
                      ||.-                     .+|+.-.......|...|++++|-    |-.|++++ ||.|.+.+.++.   ...
T Consensus        84 iWke---------------------~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~  142 (299)
T KOG1332|consen   84 IWKE---------------------ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS  142 (299)
T ss_pred             EEec---------------------CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence            9965                     333211111224788999999997    77789998 999999988654   223


Q ss_pred             EEecCCCCCeEEEEEcCCC---------------eEEEEeCCCcEEEEeCCCCc--eEEeecCCCCCeEEEEEecCC---
Q 005342          539 ATFANPPPIATYFILLPQD---------------LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSL---  598 (701)
Q Consensus       539 ~~~~~~~~~i~~l~~spdg---------------~l~~gs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~v~~spdg---  598 (701)
                      +....|...+++++|.|..               .+++|+.|..|.||+..+++  ..++|.+|.+.|+.++|.|.-   
T Consensus       143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~  222 (299)
T KOG1332|consen  143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP  222 (299)
T ss_pred             hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence            3456788899999999862               39999999999999988753  445689999999999999953   


Q ss_pred             -CEEEEEeCCCeEEEEECCCC-eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          599 -NVLVSSGADAQLCVWDAVGW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       599 -~~l~s~s~D~~I~vwd~~~g-~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                       .+|||||.||++.||..... +.-....++.    ..   ..+.+++||+.|+.|+++ .|+.+.+|.-.
T Consensus       223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~----f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE----FP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ceeeEEecCCCcEEEEEecCccCccccccccc----CC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence             48999999999999987732 1112223332    11   789999999999999986 89999999754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=9.2e-23  Score=201.45  Aligned_cols=233  Identities=15%  Similarity=0.201  Sum_probs=194.8

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      +.++...|....+.+|+.|..+.++|..    .++...   .+.+|...|+.+.++|+...+++++.|..|+||....  
T Consensus       222 i~ald~~~s~~~ilTGG~d~~av~~d~~----s~q~l~---~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~--  292 (506)
T KOG0289|consen  222 ITALDIIPSSSKILTGGEDKTAVLFDKP----SNQILA---TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL--  292 (506)
T ss_pred             eeEEeecCCCCcceecCCCCceEEEecc----hhhhhh---hccCcceEEEEEEeccchhheeecCCcceEEeecccc--
Confidence            7778888887899999999999999987    665555   6678999999999999999999999999999996521  


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC--CCCeE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIAT  549 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~--~~~i~  549 (701)
                                         .....  ....|..+|+.+..+  |+|+++++ ||...+.|++++..+......  .-.++
T Consensus       293 -------------------~s~~~--~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t  351 (506)
T KOG0289|consen  293 -------------------SSEPT--SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT  351 (506)
T ss_pred             -------------------ccCcc--ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence                               11111  224689999999998  99999999 899999999999987766532  34579


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          550 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       550 ~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      +.+|+||| .+.+|+.||.++|||+.++..+..|.||+++|..++|+-+|-|||++++|+.|++||++.-+......+. 
T Consensus       352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~-  430 (506)
T KOG0289|consen  352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD-  430 (506)
T ss_pred             EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc-
Confidence            99999999 9999999999999999999999999999999999999999999999999999999999985422222222 


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                          ..   .++.++.|.+.|.+|+.+ .|=+|++++-
T Consensus       431 ----~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k  461 (506)
T KOG0289|consen  431 ----EK---KEVNSLSFDQSGTYLGIAGSDLQVYICKK  461 (506)
T ss_pred             ----cc---ccceeEEEcCCCCeEEeecceeEEEEEec
Confidence                11   579999999999999985 5656666653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=7.1e-23  Score=206.04  Aligned_cols=293  Identities=12%  Similarity=0.097  Sum_probs=211.7

Q ss_pred             ccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc
Q 005342          316 KSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC  388 (701)
Q Consensus       316 ~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~  388 (701)
                      ++.+.-.+++|+..|.  .+++-|.       +-|.+|++||++.......-         |               .+.
T Consensus       156 P~shEi~l~hgtk~Vs--al~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~---------f---------------r~l  209 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVS--ALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS---------F---------------RQL  209 (641)
T ss_pred             CccceEeccCCceEEE--EeeecCCCceeeeccccceEEEEecccccccchh---------h---------------hcc
Confidence            4556667889999999  9999888       89999999999865432210         1               011


Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee---------cCCCCCCCCEEEEEEecCCC-EEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL---------LPDNSFGGRVVRLIYSHSGD-FLV  457 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~---------~~~~~~~~~v~~l~~spdg~-~l~  457 (701)
                      ...... |++++|+|.|..|++.+.....+++|-.    +.+...+.         ....+|...++|-+|+|+.+ .++
T Consensus       210 ~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd----G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~Fl  285 (641)
T KOG0772|consen  210 QPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD----GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFL  285 (641)
T ss_pred             CcccccccceeeecCCCCeEEEEecCcceeEEccC----CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceE
Confidence            112233 8999999999999998888899999976    22221110         11247889999999999765 688


Q ss_pred             EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC
Q 005342          458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE  533 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~  533 (701)
                      +++.||++++||++..                  .+.. ++......+..-++++++|+  |..||+|. ||.|.+|+..
T Consensus       286 T~s~DgtlRiWdv~~~------------------k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~  347 (641)
T KOG0772|consen  286 TCSYDGTLRIWDVNNT------------------KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKG  347 (641)
T ss_pred             EecCCCcEEEEecCCc------------------hhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecC
Confidence            9999999999988432                  1221 22211223455688999999  88899988 9999999975


Q ss_pred             CCc---EEEEecCCCC--CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCC--CCeEEEEEecCCCEEEEE
Q 005342          534 TFQ---TLATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQ--NRITCLAYSLSLNVLVSS  604 (701)
Q Consensus       534 ~~~---~~~~~~~~~~--~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~--~~V~~v~~spdg~~l~s~  604 (701)
                      ...   ....-..|..  .|+|++||+|| +|++-+.|+++++||++.. +++.+..|-.  -+-+.++|||+.++|++|
T Consensus       348 ~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TG  427 (641)
T KOG0772|consen  348 SRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTG  427 (641)
T ss_pred             CcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEec
Confidence            432   1222245654  89999999999 9999999999999999975 4555555532  356788999999999998


Q ss_pred             eC------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEE-EC
Q 005342          605 GA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY-EA  665 (701)
Q Consensus       605 s~------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iw-d~  665 (701)
                      +.      .|++++||..+-+.+  ..   +.-. .   ..|..+.|+|.=+.|.+ +.||+++|| |.
T Consensus       428 tS~~~~~~~g~L~f~d~~t~d~v--~k---i~i~-~---aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  428 TSAPNGMTAGTLFFFDRMTLDTV--YK---IDIS-T---ASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             ccccCCCCCceEEEEeccceeeE--EE---ecCC-C---ceEEEEeecchhhheeeecCCCceEEEECc
Confidence            64      578999999885422  22   2222 2   77899999998655555 489999885 44

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.1e-21  Score=187.72  Aligned_cols=274  Identities=14%  Similarity=0.174  Sum_probs=208.7

Q ss_pred             EeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCce
Q 005342          323 IKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQS  395 (701)
Q Consensus       323 l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V  395 (701)
                      ++...+.|.  ++.|+++       +.|.+++|||..+|+..+++          ..+                  +-++
T Consensus        10 f~~~~~~i~--sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti----------~sk------------------kyG~   59 (311)
T KOG1446|consen   10 FRETNGKIN--SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI----------NSK------------------KYGV   59 (311)
T ss_pred             cccCCCcee--EEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe----------ecc------------------cccc
Confidence            344566788  9999999       78889999999999998883          211                  1126


Q ss_pred             EEEEEcCCCCeEEEEcC--CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          396 RESTSLPDADSAVCAKS--LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       396 ~~l~~spdg~~l~s~s~--d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                      ..+.|......++.++.  |.+|+.-++.    ..++.+   .+.+|...|.++..+|-+..+++++.|++|++||++..
T Consensus        60 ~~~~Fth~~~~~i~sStk~d~tIryLsl~----dNkylR---YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~  132 (311)
T KOG1446|consen   60 DLACFTHHSNTVIHSSTKEDDTIRYLSLH----DNKYLR---YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK  132 (311)
T ss_pred             cEEEEecCCceEEEccCCCCCceEEEEee----cCceEE---EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC
Confidence            66778666666666665  8899999998    666666   56789999999999999999999999999999988432


Q ss_pred             CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC--cEEEEec---CCC
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF--QTLATFA---NPP  545 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~--~~~~~~~---~~~  545 (701)
                                         ..+-.   +   +...-...+++  |-++|++. .+.|++||++..  .+-.++.   +..
T Consensus       133 -------------------~cqg~---l---~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~  187 (311)
T KOG1446|consen  133 -------------------KCQGL---L---NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDE  187 (311)
T ss_pred             -------------------CCceE---E---ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCc
Confidence                               12211   1   11223356777  77888887 459999999864  2344443   235


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCe---EEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI---TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V---~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      ...+.+.||||| .++.++..+.+++.|.-+|..+.++.++...-   -..+|+||++++.+|++||+|.+|++++|+++
T Consensus       188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV  267 (311)
T ss_pred             cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence            678999999999 99999999999999999999999998876532   56789999999999999999999999998643


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT  667 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~  667 (701)
                      .  .   +.+.+.   +++.++.|+|...++++ .+..+.+|=...
T Consensus       268 ~--~---~~~~~~---~~~~~~~fnP~~~mf~s-a~s~l~fw~p~~  304 (311)
T KOG1446|consen  268 A--V---LRGPNG---GPVSCVRFNPRYAMFVS-ASSNLVFWLPDE  304 (311)
T ss_pred             e--E---ecCCCC---CCccccccCCceeeeee-cCceEEEEeccc
Confidence            2  1   332233   88999999998766655 455677886643

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.8e-22  Score=190.96  Aligned_cols=259  Identities=13%  Similarity=0.140  Sum_probs=199.0

Q ss_pred             ecCcceeeeEEEEccC--------CCCCeEEEEeccCC-ccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-
Q 005342          325 QIMDWWVPYCINVMPN--------ANNETISLKDFPTV-SNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-  394 (701)
Q Consensus       325 ~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-  394 (701)
                      ...+.|.  +++|||.        |-|++||+|+++.. ...                            ......|.. 
T Consensus        25 pP~DsIS--~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~----------------------------~ka~~~~~~P   74 (347)
T KOG0647|consen   25 PPEDSIS--ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV----------------------------PKAQQSHDGP   74 (347)
T ss_pred             Ccccchh--eeEeccccCceEEecccCCceEEEEEecCCccc----------------------------chhhhccCCC
Confidence            3456788  9999994        99999999999863 211                            112346777 


Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC--EEEEEECCCcEEEEecCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~~~  472 (701)
                      |-+++|+.||..+++|+.|+.+++||+.    +++..++..    |..+|.++.|-+...  .|++||-|++++.||.  
T Consensus        75 vL~v~WsddgskVf~g~~Dk~~k~wDL~----S~Q~~~v~~----Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~--  144 (347)
T KOG0647|consen   75 VLDVCWSDDGSKVFSGGCDKQAKLWDLA----SGQVSQVAA----HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT--  144 (347)
T ss_pred             eEEEEEccCCceEEeeccCCceEEEEcc----CCCeeeeee----cccceeEEEEecCCCcceeEecccccceeeccc--
Confidence            9999999999999999999999999998    777777655    999999999988766  8899999999999965  


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEE-Ee-cCCCCCeE
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLA-TF-ANPPPIAT  549 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~-~~-~~~~~~i~  549 (701)
                                         .....+.. +  .-...+.++..-..+++++. +..|.+|+++++.... .. ...+-.++
T Consensus       145 -------------------R~~~pv~t-~--~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R  202 (347)
T KOG0647|consen  145 -------------------RSSNPVAT-L--QLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTR  202 (347)
T ss_pred             -------------------CCCCeeee-e--eccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceee
Confidence                               33332221 1  12345666555566677777 9999999997764322 22 12345689


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEeCCCC--ceEEeecCCCC---------CeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          550 YFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQN---------RITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       550 ~l~~spdg-~l~~gs~dg~I~iwd~~~~--~~~~~l~~h~~---------~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      |++..+|. ..|.|+-+|.+.|..+..+  +.-.+|+.|..         .|++++|+|....|+|++.||++.+||-..
T Consensus       203 ~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  203 CVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             EEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence            99999999 7799999999999998876  44456666763         578899999888999999999999999887


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      ..+     |.+-. -|.   .+|++.+|+.+|.++|.
T Consensus       283 r~k-----Lk~s~-~~~---qpItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  283 RTK-----LKTSE-THP---QPITCCSFNRNGSIFAY  310 (347)
T ss_pred             hhh-----hhccC-cCC---CccceeEecCCCCEEEE
Confidence            432     22111 222   89999999999999885

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=2.7e-21  Score=200.33  Aligned_cols=272  Identities=16%  Similarity=0.150  Sum_probs=195.2

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeE-EEEcCCCcEEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSA-VCAKSLEKSVNL  419 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l-~s~s~d~~v~iw  419 (701)
                      +.|+.+++||+.+++....          +.                   .|..+..++|+|+|+.+ ++++.++.+++|
T Consensus         8 ~~d~~v~~~d~~t~~~~~~----------~~-------------------~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~   58 (300)
T TIGR03866         8 EKDNTISVIDTATLEVTRT----------FP-------------------VGQRPRGITLSKDGKLLYVCASDSDTIQVI   58 (300)
T ss_pred             cCCCEEEEEECCCCceEEE----------EE-------------------CCCCCCceEECCCCCEEEEEECCCCeEEEE
Confidence            4589999999998877665          22                   22235679999999976 567788999999


Q ss_pred             eccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342          420 KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT  498 (701)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~  498 (701)
                      |..    +++... .++  .+ ..+..++|+|+|+.+++++ .++.+.+||+                     .++..+.
T Consensus        59 d~~----~~~~~~-~~~--~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~---------------------~~~~~~~  109 (300)
T TIGR03866        59 DLA----TGEVIG-TLP--SG-PDPELFALHPNGKILYIANEDDNLVTVIDI---------------------ETRKVLA  109 (300)
T ss_pred             ECC----CCcEEE-ecc--CC-CCccEEEECCCCCEEEEEcCCCCeEEEEEC---------------------CCCeEEe
Confidence            997    444332 111  12 3356789999999776654 5899999966                     3344332


Q ss_pred             ecccCCCCCCeEEEEec--CCEEEEEe-C-CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEEe
Q 005342          499 NDIAADPKDSISCFALR--GSHLFSAS-G-GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHC  572 (701)
Q Consensus       499 ~~~~~~~~~~v~~l~~s--~~~l~s~s-d-g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~-~gs~dg~I~iwd  572 (701)
                      . +  .+...+.+++++  |.++++++ + ..+..||..+++...... ......+++|+|+| .++ ++..++.|++||
T Consensus       110 ~-~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d  185 (300)
T TIGR03866       110 E-I--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVID  185 (300)
T ss_pred             E-e--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence            1 2  122346788888  88888877 5 467888998887766554 23345789999999 664 455689999999


Q ss_pred             CCCCceEEeecCCC-----C--CeEEEEEecCCCEEEE-EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEE
Q 005342          573 PCTKKTKAKLKGHQ-----N--RITCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ  644 (701)
Q Consensus       573 ~~~~~~~~~l~~h~-----~--~V~~v~~spdg~~l~s-~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~  644 (701)
                      +.+++.+..+..+.     .  ....++|+|++++++. .+.++.|.+||+.+++...  .   +..+     ..+.+++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~--~---~~~~-----~~~~~~~  255 (300)
T TIGR03866       186 VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD--Y---LLVG-----QRVWQLA  255 (300)
T ss_pred             cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE--E---EEeC-----CCcceEE
Confidence            99998877664321     1  2346889999997544 4567789999999875432  1   1112     5688999


Q ss_pred             EcCCCCEEEEE--ecCeEEEEECCCCceeeeeee---eeEEEEEe
Q 005342          645 FHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQ  684 (701)
Q Consensus       645 ~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~  684 (701)
                      |+|+|++|+++  .++.|.+||+.+++++.+++.   ..+++|+|
T Consensus       256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       256 FTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence            99999999874  589999999999999888876   77777654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=5.5e-23  Score=205.93  Aligned_cols=276  Identities=15%  Similarity=0.201  Sum_probs=217.0

Q ss_pred             ecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEE
Q 005342          325 QIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRES  398 (701)
Q Consensus       325 ~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l  398 (701)
                      .|+..|-  .++.|..      +..|.|+|||+..-....-                 .+      .-.|++...-|+++
T Consensus       417 ~HGEvVc--AvtIS~~trhVyTgGkgcVKVWdis~pg~k~P-----------------vs------qLdcl~rdnyiRSc  471 (705)
T KOG0639|consen  417 AHGEVVC--AVTISNPTRHVYTGGKGCVKVWDISQPGNKSP-----------------VS------QLDCLNRDNYIRSC  471 (705)
T ss_pred             ccCcEEE--EEEecCCcceeEecCCCeEEEeeccCCCCCCc-----------------cc------cccccCcccceeee
Confidence            3666666  6666655      8889999999964311110                 01      23455443339999


Q ss_pred             EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccc
Q 005342          399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  478 (701)
Q Consensus       399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g  478 (701)
                      ..+|||+.|++|+.-.++.|||+....     ..+..........+.+++.+||.+..+++..||.|.|||+        
T Consensus       472 kL~pdgrtLivGGeastlsiWDLAapT-----prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDL--------  538 (705)
T KOG0639|consen  472 KLLPDGRTLIVGGEASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDL--------  538 (705)
T ss_pred             EecCCCceEEeccccceeeeeeccCCC-----cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEc--------
Confidence            999999999999999999999997311     1222222333467888999999999999999999999965        


Q ss_pred             ccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcC
Q 005342          479 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP  555 (701)
Q Consensus       479 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp  555 (701)
                                   .+..++.. + .+|...+.|+.++  |..|.+|+ |++|+.||+++++.+.... ..+.|.++...|
T Consensus       539 -------------hnq~~Vrq-f-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP  602 (705)
T KOG0639|consen  539 -------------HNQTLVRQ-F-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCP  602 (705)
T ss_pred             -------------ccceeeec-c-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCC
Confidence                         55555543 4 5899999999999  99999999 9999999999998777655 578899999999


Q ss_pred             CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCC
Q 005342          556 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV  634 (701)
Q Consensus       556 dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~  634 (701)
                      .+ ++++|.+++.+.+..... .....+.-|.+.|.++.|.+-|+++++.+.|+.+..|...-|..+.    + .  ...
T Consensus       603 ~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF----q-s--kE~  674 (705)
T KOG0639|consen  603 TGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF----Q-S--KES  674 (705)
T ss_pred             CccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee----e-c--ccc
Confidence            99 999999999999988644 3445566699999999999999999999999999999999986332    2 1  111


Q ss_pred             CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          635 PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       635 ~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                         +.|.++.+|.|.+++++| .|..-.||.+
T Consensus       675 ---SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  675 ---SSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence               889999999999999997 6777777765

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=4.8e-21  Score=192.53  Aligned_cols=332  Identities=13%  Similarity=0.123  Sum_probs=240.0

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      ..+.+||+..+......+.....|.  ...|.|.       ...+.+.+|+.+++...+..       ..          
T Consensus       180 h~lSVWdWqk~~~~~~vk~sne~v~--~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~-------~~----------  240 (626)
T KOG2106|consen  180 HMLSVWDWQKKAKLGPVKTSNEVVF--LATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQ-------GI----------  240 (626)
T ss_pred             cccchhhchhhhccCcceeccceEE--EEEeccCCCcEEEEeCCceEEEEEccCCceEEEe-------ec----------
Confidence            6678999999998888888888888  9999997       66789999999988876652       11          


Q ss_pred             CCCCCCCccccCCCc--eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE
Q 005342          380 GDDSNDSSCFNDNNQ--SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV  457 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~--V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~  457 (701)
                               +.++..  |.+++|.++|. +++|.++|.|.||+..    +.+..+   ....|.+.|.++..-.+|. |+
T Consensus       241 ---------fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~----~~~~~k---~~~aH~ggv~~L~~lr~Gt-ll  302 (626)
T KOG2106|consen  241 ---------FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG----TNRISK---QVHAHDGGVFSLCMLRDGT-LL  302 (626)
T ss_pred             ---------cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC----CceEEe---EeeecCCceEEEEEecCcc-Ee
Confidence                     223333  99999999987 5789999999999986    443333   2226999999999999998 56


Q ss_pred             EEECCCcEEEEecCCCCc-----c----------ccccccce-----eeEEeeCCCCeEEeecccCCCCCCeEEEEec--
Q 005342          458 ALTQTATHKLWKWQSNKQ-----S----------LEEENVNM-----ESQLYQPSSKLVMTNDIAADPKDSISCFALR--  515 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~-----~----------~g~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--  515 (701)
                      +|+.|+.|..||-.-...     +          .|+...-+     .+..=..+++....   ..+|......++..  
T Consensus       303 SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~---v~gh~delwgla~hps  379 (626)
T KOG2106|consen  303 SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT---VQGHGDELWGLATHPS  379 (626)
T ss_pred             ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE---EEecccceeeEEcCCC
Confidence            699999999998322222     0          11110000     00000112222111   13677888888888  


Q ss_pred             CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE
Q 005342          516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY  594 (701)
Q Consensus       516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~  594 (701)
                      .+.+++++ |+.+++|+  ..+.+.+.. ...+..|+.|+|.|.+|.|+..|...+.|.++...+..-.. ..++++++|
T Consensus       380 ~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~y  455 (626)
T KOG2106|consen  380 KNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRY  455 (626)
T ss_pred             hhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEE
Confidence            66778888 99999999  455555544 45678999999999999999999999999999777665554 789999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeee
Q 005342          595 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ  673 (701)
Q Consensus       595 spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~  673 (701)
                      +|+|.+||.||.|+.|+||.+..+......    +...+.   .+|+.+.||+|++++.+ +.|-.|-.|.....+.+..
T Consensus       456 sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r----~~k~~g---s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts  528 (626)
T KOG2106|consen  456 SPDGAFLAVGSHDNHIYIYRVSANGRKYSR----VGKCSG---SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS  528 (626)
T ss_pred             cCCCCEEEEecCCCeEEEEEECCCCcEEEE----eeeecC---ceeEEeeecCCCceEEeccCceEEEEEccccCcccce
Confidence            999999999999999999999875322211    222333   88999999999999999 5788999995433333332


Q ss_pred             eeeeeEEEE--EeeEEeeeec
Q 005342          674 VLLISHIMF--VQIVVKFHSF  692 (701)
Q Consensus       674 l~~i~~~~f--s~~~~~f~~~  692 (701)
                         +..+.|  +-|.+.|.-|
T Consensus       529 ---~kDvkW~t~~c~lGF~v~  546 (626)
T KOG2106|consen  529 ---VKDVKWATYTCTLGFEVF  546 (626)
T ss_pred             ---ecceeeeeeEEEEEEEEe
Confidence               444444  3455555433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=4.9e-23  Score=212.71  Aligned_cols=240  Identities=18%  Similarity=0.209  Sum_probs=193.4

Q ss_pred             EEEEc-CCCCeEEEEcCCCcEEEEeccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          397 ESTSL-PDADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       397 ~l~~s-pdg~~l~s~s~d~~v~iw~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      .+..+ |++++|.|||.||.|++|++...... .+...  .....|..-|..++...+|+.++++|.|-+|++|+.... 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~--asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~-  105 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYI--ASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKD-  105 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchh--hhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccC-
Confidence            34443 67888999999999999998632211 11111  133568889999999999999999999999999976321 


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc--EEEEe-------
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--TLATF-------  541 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~--~~~~~-------  541 (701)
                                        ...++.. + +.|...|.|+++-   ...+|+|+ |+.|.+||++++.  .+.++       
T Consensus       106 ------------------~~~c~st-i-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s  165 (735)
T KOG0308|consen  106 ------------------NTFCMST-I-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS  165 (735)
T ss_pred             ------------------cchhHhh-h-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence                              1123321 3 5799999999994   67788899 9999999999873  33222       


Q ss_pred             -c-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          542 -A-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       542 -~-~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                       . |+..+|++++..+.| .|++|+..+.+++||.++++.+..++||+..|..+..++||..++|+|.||+|++||+.-.
T Consensus       166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ  245 (735)
T ss_pred             CCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence             2 778899999999999 9999999999999999999999999999999999999999999999999999999999875


Q ss_pred             eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342          619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL  668 (701)
Q Consensus       619 ~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g  668 (701)
                      +  |...+.    -|.   ..|+++..+|+-.++++| .||.|..=|+.+.
T Consensus       246 r--Cl~T~~----vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  246 R--CLATYI----VHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             c--eeeeEE----ecc---CceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            4  333333    333   679999999999999997 8999999999874

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=4.3e-22  Score=206.97  Aligned_cols=290  Identities=13%  Similarity=0.122  Sum_probs=215.0

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCC-----------CCeEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPD-----------ADSAV  408 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spd-----------g~~l~  408 (701)
                      ..|..++|||+..-......            +              .+--|.. ||.+.--|.           ...++
T Consensus       343 YndhSlYvWDvrD~~kvgk~------------~--------------s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~  396 (1080)
T KOG1408|consen  343 YNDHSLYVWDVRDVNKVGKC------------S--------------SMLYHSACIWDVENLPCNVHSPTAACLPRGCFT  396 (1080)
T ss_pred             EcCceEEEEeccccccccce------------e--------------eeeeccceeeeeccccccccCcccccCCcccee
Confidence            78999999999764432220            0              1235666 777766551           23489


Q ss_pred             EEcCCCcEEEEeccccCCCCceeE--------eecCC-----------------------CCCCCCEEEEEEecCCCEEE
Q 005342          409 CAKSLEKSVNLKLQLINEPSECRT--------LLLPD-----------------------NSFGGRVVRLIYSHSGDFLV  457 (701)
Q Consensus       409 s~s~d~~v~iw~~~~~~~~~~~~~--------l~~~~-----------------------~~~~~~v~~l~~spdg~~l~  457 (701)
                      +|+.|++|++|++..... ++.+.        ++++.                       -+....+.+++.||+|++|+
T Consensus       397 TCSsD~TIRlW~l~~ctn-n~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLA  475 (1080)
T KOG1408|consen  397 TCSSDGTIRLWDLAFCTN-NQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLA  475 (1080)
T ss_pred             EecCCCcEEEeecccccc-cceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceec
Confidence            999999999999973111 11100        00000                       03356799999999999999


Q ss_pred             EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----CCEEEEEe-CCeEEEEe
Q 005342          458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFS  531 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~~~l~s~s-dg~I~iwd  531 (701)
                      +|..-|.++||++                     ..-..+.  +...|+..|.|+.++     .+.|++++ |.-|++||
T Consensus       476 sGDr~GnlrVy~L---------------------q~l~~~~--~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D  532 (1080)
T KOG1408|consen  476 SGDRGGNLRVYDL---------------------QELEYTC--FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD  532 (1080)
T ss_pred             ccCccCceEEEEe---------------------hhhhhhh--heecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence            9999999999976                     3333222  225799999999999     56789999 99999999


Q ss_pred             CCC-CcEEEEecCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEeecCC-----CCCeEEEEEecCCCEEE
Q 005342          532 LET-FQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGH-----QNRITCLAYSLSLNVLV  602 (701)
Q Consensus       532 ~~~-~~~~~~~~~~~~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~~~~~~l~~h-----~~~V~~v~~spdg~~l~  602 (701)
                      ... ..+++++.+|...|+++.|.-.|   .+++++.|..|..--.+...-...+..|     ...+..++..|..++++
T Consensus       533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~  612 (1080)
T KOG1408|consen  533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV  612 (1080)
T ss_pred             cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence            854 45788999999999999999887   8888888987765322211111112111     24689999999999999


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----e
Q 005342          603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----I  677 (701)
Q Consensus       603 s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i  677 (701)
                      +++.|..|+|||+.+|+..  +.++    |...+++....+...|.|.|+|++ .|.++.++|..+|+++.++.|    |
T Consensus       613 t~cQDrnirif~i~sgKq~--k~FK----gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~V  686 (1080)
T KOG1408|consen  613 TVCQDRNIRIFDIESGKQV--KSFK----GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAV  686 (1080)
T ss_pred             EEecccceEEEecccccee--eeec----ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhe
Confidence            9999999999999999743  2333    222344788899999999999997 899999999999999999999    9


Q ss_pred             eEEEEEeeE
Q 005342          678 SHIMFVQIV  686 (701)
Q Consensus       678 ~~~~fs~~~  686 (701)
                      +++.|+++=
T Consensus       687 TG~kF~nDC  695 (1080)
T KOG1408|consen  687 TGVKFLNDC  695 (1080)
T ss_pred             eeeeecccc
Confidence            999998763

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=9.8e-22  Score=210.88  Aligned_cols=255  Identities=15%  Similarity=0.121  Sum_probs=198.6

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      .|.. ...++|.|+|.+|++++.||.|++|+.....  .....+.    .+...|.+++..  +.+|++|+.+++|.+|.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~--e~P~ti~----~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE--EEPETID----ISGELVSSIACY--SNHFLTGSEQNTVLRYK   82 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc--cCCchhh----ccCceeEEEeec--ccceEEeeccceEEEee
Confidence            5666 8899999999999999999999999986431  1111111    145667766654  55899999999999997


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP  546 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~  546 (701)
                      +...                  ..+.++.     ...-++.+++++  |++++.|+ |-.|++.+..+......+.+|..
T Consensus        83 fps~------------------~~~~iL~-----Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a  139 (933)
T KOG1274|consen   83 FPSG------------------EEDTILA-----RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA  139 (933)
T ss_pred             CCCC------------------Cccceee-----eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC
Confidence            7332                  2222332     245689999999  88999999 89999999999999999999999


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC--------CCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h--------~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +|.++.++|.+ ++|+.+.||.|++||+.++.+.+++.+-        ...+..++|+|+|..++..+.|+.|++|+..+
T Consensus       140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG  219 (933)
T ss_pred             ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence            99999999999 9999999999999999999887776651        34577889999988788888899999999999


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-eeEEEEEe
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-ISHIMFVQ  684 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-i~~~~fs~  684 (701)
                      ++...  .+. .. .+.   ..+..++|+|+|+|||+| -||.|.|||+++-+. +.... |...+|-|
T Consensus       220 we~~f--~Lr-~~-~~s---s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~~~~Vc~~aw~p  280 (933)
T KOG1274|consen  220 WELQF--KLR-DK-LSS---SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEFKRAVCCEAWKP  280 (933)
T ss_pred             ceehe--eec-cc-ccc---cceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccccceeEEEecCC
Confidence            87443  222 11 222   459999999999999997 799999999997433 22222 66666643

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=4.1e-23  Score=199.59  Aligned_cols=255  Identities=13%  Similarity=0.144  Sum_probs=204.3

Q ss_pred             ccCCCc-eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          389 FNDNNQ-SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      |.||.. |.+++=+|.. ..+++|+.||.|++||+.    ...|..   .+..|.+.|..++++.  ..+++++.|.+|+
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls----qR~~~~---~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK  132 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS----QRECIR---TFKAHEGLVRGICVTQ--TSFFTVGDDKTVK  132 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehh----hhhhhh---eeecccCceeeEEecc--cceEEecCCccee
Confidence            679999 9999999987 789999999999999997    444444   4456899999999987  5689999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCC
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~  544 (701)
                      .|.++..                      .... +  ...+.+..+..+  ++.+++++ ..|.|||.+...++..+.-.
T Consensus       133 ~wk~~~~----------------------p~~t-i--lg~s~~~gIdh~~~~~~FaTcG-e~i~IWD~~R~~Pv~smswG  186 (433)
T KOG0268|consen  133 QWKIDGP----------------------PLHT-I--LGKSVYLGIDHHRKNSVFATCG-EQIDIWDEQRDNPVSSMSWG  186 (433)
T ss_pred             eeeccCC----------------------ccee-e--eccccccccccccccccccccC-ceeeecccccCCccceeecC
Confidence            9976321                      0000 1  113345555555  44555554 46999999888899999877


Q ss_pred             CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          545 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       545 ~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                      ...|.++.|+|..  .|+++..|+.|.+||++++.+++... -...-+.++|+|.+--+++|++|..++.+|++.-    
T Consensus       187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l----  261 (433)
T KOG0268|consen  187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL----  261 (433)
T ss_pred             CCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhh----
Confidence            8889999999998  88888899999999999999888765 3455688999998888899999999999999983    


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-----eeEEEEEeeEE
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQIVV  687 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~~  687 (701)
                      ..++. +-.+|.   +.|.+|.|||.|+-+++| .|.+|+||.+..+.....+..     |.++.||.+..
T Consensus       262 ~~p~~-v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk  328 (433)
T KOG0268|consen  262 SRPLN-VHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK  328 (433)
T ss_pred             cccch-hhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence            35555 444666   999999999999999996 799999999988876555544     89999986654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.3e-21  Score=185.34  Aligned_cols=255  Identities=14%  Similarity=0.098  Sum_probs=191.8

Q ss_pred             eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          395 SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       395 V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                      |.+++||| ...+++.||.|++|++|+++.   .+.... + ....|.++|.+++|+.||..+++|+.|+.+++||+   
T Consensus        30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~---~g~~~~-k-a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL---  101 (347)
T KOG0647|consen   30 ISALAFSPQADNLLAAGSWDGTVRIWEVQN---SGQLVP-K-AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL---  101 (347)
T ss_pred             hheeEeccccCceEEecccCCceEEEEEec---CCcccc-h-hhhccCCCeEEEEEccCCceEEeeccCCceEEEEc---
Confidence            99999999 555666999999999999984   232221 1 12358899999999999999999999999999955   


Q ss_pred             CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C--CEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G--SHLFSAS-GGKISIFSLETFQTLATFANPPPIA  548 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~--~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i  548 (701)
                                        .+++..+.   ..|..+|.++.|-  .  ..|++|+ |++|+.||++...++.++. .+..+
T Consensus       102 ------------------~S~Q~~~v---~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRv  159 (347)
T KOG0647|consen  102 ------------------ASGQVSQV---AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERV  159 (347)
T ss_pred             ------------------cCCCeeee---eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-cccee
Confidence                              66665542   4699999999998  2  3689999 9999999999988888887 45566


Q ss_pred             EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEee-c-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 005342          549 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL  626 (701)
Q Consensus       549 ~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l-~-~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l  626 (701)
                      +++..-.. .++++..+..|.+|+++++...... . .-+-.+.+++..+|..-.+.||-+|.+-|..+..+.+.....+
T Consensus       160 Ya~Dv~~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF  238 (347)
T KOG0647|consen  160 YAADVLYP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF  238 (347)
T ss_pred             eehhccCc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE
Confidence            66544322 7888999999999999876433211 1 1223578999889888779999999999999988643222333


Q ss_pred             eeccCCC----CCC-CCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeeeee----eeEEEEE
Q 005342          627 HSFQTGL----VPE-TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL----ISHIMFV  683 (701)
Q Consensus       627 ~~~~~~~----~~~-~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs  683 (701)
                      +   .|.    ... -..|++|+|+|....|++ |+||++.+||-..-..+++.+.    |+..+|+
T Consensus       239 k---CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn  302 (347)
T KOG0647|consen  239 K---CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFN  302 (347)
T ss_pred             E---EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEec
Confidence            2   122    100 146889999998777887 7999999999977766666554    7777665

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.8e-22  Score=208.66  Aligned_cols=276  Identities=15%  Similarity=0.164  Sum_probs=211.5

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNL  419 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw  419 (701)
                      +.||.|++|++........             .+.          ...+..|.. |+.++...+|+.|+++|.|.+|++|
T Consensus        44 GRDg~i~~W~~~~d~~~~s-------------~~~----------~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W  100 (735)
T KOG0308|consen   44 GRDGIIRLWSVTQDSNEPS-------------TPY----------IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVW  100 (735)
T ss_pred             CCCceEEEeccccccCCcc-------------cch----------hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEe
Confidence            6799999999865543211             001          112567888 9999999999999999999999999


Q ss_pred             eccccCCCCceeEeecCCCCCCCCEEEEEE-ecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342          420 KLQLINEPSECRTLLLPDNSFGGRVVRLIY-SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT  498 (701)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~-spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~  498 (701)
                      +.....  .-|..   ....|.+.|.|+++ -++...+++||-|+.|.+||++++..   ..+.+         .+....
T Consensus       101 ~~~~~~--~~c~s---tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~---~l~~s---------~n~~t~  163 (735)
T KOG0308|consen  101 NAHKDN--TFCMS---TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA---TLVAS---------FNNVTV  163 (735)
T ss_pred             ecccCc--chhHh---hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcch---hhhhh---------cccccc
Confidence            997321  12333   34569999999999 78888999999999999999966521   11111         011111


Q ss_pred             ecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC
Q 005342          499 NDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC  574 (701)
Q Consensus       499 ~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~  574 (701)
                      ..+..++...|++++.+  |..+++|+ .+.+++||.++++.+..+.||...|..+..++|| .+++++.||+|++||+.
T Consensus       164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence            11323788999999999  77888888 8999999999999999999999999999999999 99999999999999999


Q ss_pred             CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCE-EE
Q 005342          575 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LL  653 (701)
Q Consensus       575 ~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~-l~  653 (701)
                      ..+++.++..|+..|+++..+|+-..+++|+.||.|+.=|+++...  ...+.    ...   .+|..+..+.+.+- -+
T Consensus       244 qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~tlic----k~d---aPv~~l~~~~~~~~~Wv  314 (735)
T KOG0308|consen  244 QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--STLIC----KED---APVLKLHLHEHDNSVWV  314 (735)
T ss_pred             ccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh--heEee----cCC---CchhhhhhccccCCcee
Confidence            9999999999999999999999999999999999999999998421  11111    111   45556655543332 33


Q ss_pred             EEecCeEEEEEC
Q 005342          654 SIHEGQIDVYEA  665 (701)
Q Consensus       654 sg~Dg~I~iwd~  665 (701)
                      +..|+.|+-|..
T Consensus       315 tTtds~I~rW~~  326 (735)
T KOG0308|consen  315 TTTDSSIKRWKL  326 (735)
T ss_pred             eeccccceecCC
Confidence            347777777765

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=2.8e-22  Score=200.91  Aligned_cols=269  Identities=12%  Similarity=0.087  Sum_probs=207.4

Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      -.|.. |.++++|...+.+.||+. |.|+|||+...........  ++.-...+.|.++..+|||+.|++|+.-.++.||
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pvsq--Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiW  492 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW  492 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccc--ccccCcccceeeeEecCCCceEEeccccceeeee
Confidence            37888 999999999999999998 8999999974321111111  1112246789999999999999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP  545 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~  545 (701)
                      |+...                   +-.+... + .........++.+  .+..+++. ||.|.|||+.+...++.|++|.
T Consensus       493 DLAap-------------------Tprikae-l-tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht  551 (705)
T KOG0639|consen  493 DLAAP-------------------TPRIKAE-L-TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT  551 (705)
T ss_pred             eccCC-------------------Ccchhhh-c-CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence            88443                   2221110 1 1222355667777  44444444 9999999999999999999999


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      ..+.||.+++|| .|.+|+-|.+|+-||++++..+.... ..+.|.++-.+|++.+|+.|-..+.+-|-.....++.   
T Consensus       552 DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky---  627 (705)
T KOG0639|consen  552 DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY---  627 (705)
T ss_pred             CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccce---
Confidence            999999999999 99999999999999999987766543 4567999999999999999999999999888775422   


Q ss_pred             eeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeeeee---eeEEEEEeeEEeeeecceEEEEeC
Q 005342          625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL---ISHIMFVQIVVKFHSFKFFYVAVG  700 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~~~~f~~~~~~~~~~~  700 (701)
                      .+.    -|.   +.|.++.|++.|+++++ |.|+-+..|...-|..+-..+.   |.+...|        +.-.||.+|
T Consensus       628 qlh----lhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS--------~ddkyIVTG  692 (705)
T KOG0639|consen  628 QLH----LHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS--------FDDKYIVTG  692 (705)
T ss_pred             eec----ccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeec--------cCceEEEec
Confidence            222    232   88999999999999998 7999999999988887766655   5444433        555778777


Q ss_pred             C
Q 005342          701 A  701 (701)
Q Consensus       701 ~  701 (701)
                      +
T Consensus       693 S  693 (705)
T KOG0639|consen  693 S  693 (705)
T ss_pred             C
Confidence            4

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=196.03  Aligned_cols=281  Identities=15%  Similarity=0.165  Sum_probs=213.1

Q ss_pred             CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcC-CCcEEEEec
Q 005342          343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS-LEKSVNLKL  421 (701)
Q Consensus       343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~-d~~v~iw~~  421 (701)
                      ..++.+||+.+|.....          +++..             ++.+|.-   -+.  ++.+++++.. ...+.+|.+
T Consensus        17 ~~~~~~~dl~TGt~~~~----------ykg~~-------------~a~~~sl---~~l--~~~yllsaq~~rp~l~vw~i   68 (476)
T KOG0646|consen   17 PINCIVWDLRTGTSLLQ----------YKGSY-------------LAQAASL---TAL--NNEYLLSAQLKRPLLHVWEI   68 (476)
T ss_pred             CcceeEEecCCCceeEE----------ecCcc-------------cccchhh---hhh--chhheeeecccCcccccccc
Confidence            35699999999987666          33320             1111111   011  1256666543 357889998


Q ss_pred             cccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecc
Q 005342          422 QLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDI  501 (701)
Q Consensus       422 ~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~  501 (701)
                      .......  ..+     --+++|.+++-+|+|.+++.|+..|.+++|.                     ..+|.++.. +
T Consensus        69 ~k~~~~~--q~~-----v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWe---------------------lssG~LL~v-~  119 (476)
T KOG0646|consen   69 LKKDQVV--QYI-----VLPGPVHALASSNLGYFLLAGTISGNLYLWE---------------------LSSGILLNV-L  119 (476)
T ss_pred             Cchhhhh--hhc-----ccccceeeeecCCCceEEEeecccCcEEEEE---------------------eccccHHHH-H
Confidence            6311111  111     1368899999999999999988999999994                     477776543 3


Q ss_pred             cCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC---------CCcEEEEecCCCCCeEEEEEcCCC---eEEEEeCCC
Q 005342          502 AADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---------TFQTLATFANPPPIATYFILLPQD---LFAFGFDDS  566 (701)
Q Consensus       502 ~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~---------~~~~~~~~~~~~~~i~~l~~spdg---~l~~gs~dg  566 (701)
                       ..|-..|+|+.|+  |.++++|+ ||.|.+|++-         +-++.+.+..|.-+|+.+...+.|   .+++++.|.
T Consensus       120 -~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~  198 (476)
T KOG0646|consen  120 -SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR  198 (476)
T ss_pred             -HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence             5799999999999  99999999 9999999863         335778889999999999999886   999999999


Q ss_pred             cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee-----------eeeeeeeccCCCCC
Q 005342          567 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-----------CSKFLHSFQTGLVP  635 (701)
Q Consensus       567 ~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~-----------~~~~l~~~~~~~~~  635 (701)
                      ++++||+..+.++.++. -...+.+++.+|-++.++.|+.+|.|.+.++......           ....+. ...||. 
T Consensus       199 t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~-~~~Gh~-  275 (476)
T KOG0646|consen  199 TIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN-VLVGHE-  275 (476)
T ss_pred             eEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee-eecccc-
Confidence            99999999999988876 4567999999999999999999999999988653211           112233 223454 


Q ss_pred             CCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee---e-eeEEEEEe
Q 005342          636 ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL---L-ISHIMFVQ  684 (701)
Q Consensus       636 ~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~---~-i~~~~fs~  684 (701)
                      .+..|+|++.+-||..|++| .||.++|||+.+.++++++.   | |+.+.+.|
T Consensus       276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  276 NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence            11389999999999999998 79999999999999998887   3 88888843

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.4e-21  Score=194.65  Aligned_cols=276  Identities=14%  Similarity=0.192  Sum_probs=212.3

Q ss_pred             CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342          327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES  398 (701)
Q Consensus       327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l  398 (701)
                      .+.|+  ++.|+|.       +-|++++||.+.........                           .+.-... |.+.
T Consensus       213 ~~~I~--sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lq---------------------------S~~l~~fPi~~a  263 (514)
T KOG2055|consen  213 HGGIT--SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQ---------------------------SIHLEKFPIQKA  263 (514)
T ss_pred             cCCce--EEEecCCCceEEEecCCCcEEEEEecCccChhhe---------------------------eeeeccCcccee
Confidence            44688  9999999       99999999988765443320                           0011112 7788


Q ss_pred             EEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342          399 TSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  477 (701)
Q Consensus       399 ~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  477 (701)
                      .|+|+|. .+++++.....+.||+.    +.+..++..+.......+.....||++++|+..+..|.|.+.         
T Consensus       264 ~f~p~G~~~i~~s~rrky~ysyDle----~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lL---------  330 (514)
T KOG2055|consen  264 EFAPNGHSVIFTSGRRKYLYSYDLE----TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLL---------  330 (514)
T ss_pred             eecCCCceEEEecccceEEEEeecc----ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEee---------
Confidence            9999999 89999999999999998    666666554443334567788899999999999999999988         


Q ss_pred             cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe--EEEE
Q 005342          478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA--TYFI  552 (701)
Q Consensus       478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i--~~l~  552 (701)
                                  ...+++++.. +  .-.+.|.+++|+  ++.|++++ +|.|++||++...+++++.. .+.|  ++++
T Consensus       331 ------------hakT~eli~s-~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~  394 (514)
T KOG2055|consen  331 ------------HAKTKELITS-F--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLC  394 (514)
T ss_pred             ------------hhhhhhhhhe-e--eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeee
Confidence                        4456664432 2  246789999998  77666665 99999999999999999873 3333  7889


Q ss_pred             EcCCC-eEEEEeCCCcEEEEeCCC------CceEEeecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCeeeee
Q 005342          553 LLPQD-LFAFGFDDSSILVHCPCT------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       553 ~spdg-~l~~gs~dg~I~iwd~~~------~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~--D~~I~vwd~~~g~~~~~  623 (701)
                      .+++| ++|+|+..|.|-|||..+      .+++..+..-...|+++.|+||++.||-+|.  +..+++-++.+-     
T Consensus       395 ~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~-----  469 (514)
T KOG2055|consen  395 ISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC-----  469 (514)
T ss_pred             ecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce-----
Confidence            99999 999999999999999654      4566666666778999999999998876664  778999999983     


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                      ..+.+++.... .-+.|+|++|||.|-++|.| .+|.+.+|.+.
T Consensus       470 TVFsNfP~~n~-~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  470 TVFSNFPTSNT-KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeccCCCCCC-cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            22333332221 12679999999999999999 78999999874

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6.7e-21  Score=180.83  Aligned_cols=272  Identities=14%  Similarity=0.158  Sum_probs=193.2

Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHK  466 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~  466 (701)
                      .+|.+ |.++.|.+-|+.+|+|+.|++++|||..+.  ++. +..+.....|.+.|..+.|.+-  |+.+++++.|+++.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~--s~~-W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD--SGT-WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCC--CCc-eEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            47888 999999999999999999999999997532  222 3333233468999999999763  88999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCc----
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQ----  536 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~----  536 (701)
                      ||.-.....              +..+.+ .....+ ....+.|+++.|.    |-.+++++ ||.++||+....-    
T Consensus        87 iWEE~~~~~--------------~~~~~~Wv~~ttl-~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~  151 (361)
T KOG2445|consen   87 IWEEQEKSE--------------EAHGRRWVRRTTL-VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ  151 (361)
T ss_pred             eeeeccccc--------------ccccceeEEEEEe-ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence            996421110              111112 111112 2567789999998    88899999 9999999865432    


Q ss_pred             --EEEEec-------CCCCCeEEEEEcCCC----eEEEEeCC-----CcEEEEeCCCC----ceEEeecCCCCCeEEEEE
Q 005342          537 --TLATFA-------NPPPIATYFILLPQD----LFAFGFDD-----SSILVHCPCTK----KTKAKLKGHQNRITCLAY  594 (701)
Q Consensus       537 --~~~~~~-------~~~~~i~~l~~spdg----~l~~gs~d-----g~I~iwd~~~~----~~~~~l~~h~~~V~~v~~  594 (701)
                        ..+.+.       .+..+..|+.|+|..    +||+|+.+     +.++||....+    ..+.++.+|..+|++++|
T Consensus       152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w  231 (361)
T KOG2445|consen  152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW  231 (361)
T ss_pred             chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence              222232       345567899999865    88888877     47888875543    345678899999999999


Q ss_pred             ecC-C---CEEEEEeCCCeEEEEECCCCe---------------eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-
Q 005342          595 SLS-L---NVLVSSGADAQLCVWDAVGWK---------------KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-  654 (701)
Q Consensus       595 spd-g---~~l~s~s~D~~I~vwd~~~g~---------------~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-  654 (701)
                      .|+ |   .+||+++.|| |+||+++.-.               ....+.+..+ .+|.   +.|..+.|+-.|..|++ 
T Consensus       232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~---~~VWrv~wNmtGtiLsSt  306 (361)
T KOG2445|consen  232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHN---GEVWRVRWNMTGTILSST  306 (361)
T ss_pred             ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCC---CceEEEEEeeeeeEEeec
Confidence            995 3   4789999999 9999998410               0112223312 3443   89999999999999998 


Q ss_pred             EecCeEEEEECC---CCceeeeeee---eeEEEEEe
Q 005342          655 IHEGQIDVYEAP---TLNHTSQVLL---ISHIMFVQ  684 (701)
Q Consensus       655 g~Dg~I~iwd~~---~g~~~~~l~~---i~~~~fs~  684 (701)
                      |+||.|++|...   ..++...+..   ++...|++
T Consensus       307 GdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~  342 (361)
T KOG2445|consen  307 GDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ  342 (361)
T ss_pred             CCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence            699999999863   2344444444   55555543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=9.2e-22  Score=196.37  Aligned_cols=251  Identities=11%  Similarity=0.111  Sum_probs=194.7

Q ss_pred             ecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-e
Q 005342          325 QIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-S  395 (701)
Q Consensus       325 ~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V  395 (701)
                      .|.+.|.  .+++.|.        +..+.+.|||..+......          ..+...         +.-.|.||.. =
T Consensus       122 ~h~gEVn--RaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~----------~~~~~~---------Pdl~L~gH~~eg  180 (422)
T KOG0264|consen  122 NHDGEVN--RARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK----------ASGECR---------PDLRLKGHEKEG  180 (422)
T ss_pred             cCCccch--hhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc----------ccccCC---------CceEEEeecccc
Confidence            4778888  8888886        7788999999987655443          111000         1223778888 7


Q ss_pred             EEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcEEEEecCCC
Q 005342          396 RESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       396 ~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~  473 (701)
                      .+++|++... .|++|+.|++|.+||++.....+.+......+.+|...|..++|++-. ..+++++.|+.+.|||.+++
T Consensus       181 ~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~  260 (422)
T KOG0264|consen  181 YGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN  260 (422)
T ss_pred             cccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC
Confidence            8899998654 789999999999999985444322222222346799999999999854 46788899999999987531


Q ss_pred             CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCC-cEEEEecCCCCCe
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIA  548 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~~~i  548 (701)
                                         +.+...  ....|.++|.|++|+   +..||+|+ |++|.+||+++. ++++++.+|...|
T Consensus       261 -------------------~~~~~~--~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev  319 (422)
T KOG0264|consen  261 -------------------TSKPSH--SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV  319 (422)
T ss_pred             -------------------CCCCcc--cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence                               111111  114799999999999   67788999 999999999875 4788999999999


Q ss_pred             EEEEEcCCC--eEEEEeCCCcEEEEeCCCC--------------ceEEeecCCCCCeEEEEEecCCC-EEEEEeCCCeEE
Q 005342          549 TYFILLPQD--LFAFGFDDSSILVHCPCTK--------------KTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLC  611 (701)
Q Consensus       549 ~~l~~spdg--~l~~gs~dg~I~iwd~~~~--------------~~~~~l~~h~~~V~~v~~spdg~-~l~s~s~D~~I~  611 (701)
                      .++.|||+.  .+|+++.|+.+.+||+..-              +++..-.||+..|+.+.|+|+.. .++|.++|+.+.
T Consensus       320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq  399 (422)
T KOG0264|consen  320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ  399 (422)
T ss_pred             EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence            999999998  9999999999999998641              23456678999999999999776 677899999999


Q ss_pred             EEECCC
Q 005342          612 VWDAVG  617 (701)
Q Consensus       612 vwd~~~  617 (701)
                      ||.+..
T Consensus       400 IW~~s~  405 (422)
T KOG0264|consen  400 IWQMAE  405 (422)
T ss_pred             Eeeccc
Confidence            999875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=8.5e-21  Score=180.61  Aligned_cols=255  Identities=15%  Similarity=0.216  Sum_probs=195.6

Q ss_pred             CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342          327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES  398 (701)
Q Consensus       327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l  398 (701)
                      .+.|+  .+.|+|.       +.||++++||+........+                              .|.. +.+.
T Consensus        13 ~d~IS--~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~------------------------------~~~~plL~c   60 (323)
T KOG1036|consen   13 EDGIS--SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF------------------------------KHGAPLLDC   60 (323)
T ss_pred             hhcee--eEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe------------------------------ecCCceeee
Confidence            45678  9999976       89999999999877544431                              4555 8889


Q ss_pred             EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccc
Q 005342          399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  478 (701)
Q Consensus       399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g  478 (701)
                      +|.++ ..+++|+-||.|+.+|++    ++....+    ..|...|.|+.+++....+++||.|++|++||...      
T Consensus        61 ~F~d~-~~~~~G~~dg~vr~~Dln----~~~~~~i----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~------  125 (323)
T KOG1036|consen   61 AFADE-STIVTGGLDGQVRRYDLN----TGNEDQI----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN------  125 (323)
T ss_pred             eccCC-ceEEEeccCceEEEEEec----CCcceee----ccCCCceEEEEeeccCCeEEEcccCccEEEEeccc------
Confidence            99874 678999999999999998    5543332    24899999999999888899999999999997632      


Q ss_pred             ccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEe--cCCCCCeEEEEEcC
Q 005342          479 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLP  555 (701)
Q Consensus       479 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~--~~~~~~i~~l~~sp  555 (701)
                                     ....-. +  .....|.++..+|+.|++|+ |..+.+||+++.......  ...+..++|+++-|
T Consensus       126 ---------------~~~~~~-~--d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p  187 (323)
T KOG1036|consen  126 ---------------KVVVGT-F--DQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP  187 (323)
T ss_pred             ---------------cccccc-c--ccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec
Confidence                           111110 1  23448889888888888877 999999999887643322  12355789999999


Q ss_pred             CC-eEEEEeCCCcEEEEeCCCC----ceEEeecCCCC---------CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          556 QD-LFAFGFDDSSILVHCPCTK----KTKAKLKGHQN---------RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       556 dg-~l~~gs~dg~I~iwd~~~~----~~~~~l~~h~~---------~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      ++ -+++++-||.|.+=.++..    +....|+.|..         +|++++|+|-...||||+.||.|.+||+.+.+.+
T Consensus       188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL  267 (323)
T ss_pred             CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence            88 7888999999888666554    33445666653         8999999999889999999999999999985432


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI  655 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg  655 (701)
                           ..+... .   ..|.+++|+.||..||++
T Consensus       268 -----~q~~~~-~---~SI~slsfs~dG~~LAia  292 (323)
T KOG1036|consen  268 -----KQLAKY-E---TSISSLSFSMDGSLLAIA  292 (323)
T ss_pred             -----hhccCC-C---CceEEEEeccCCCeEEEE
Confidence                 212222 1   679999999999999985

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.1e-21  Score=181.71  Aligned_cols=245  Identities=17%  Similarity=0.219  Sum_probs=192.9

Q ss_pred             eEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc
Q 005342          320 LSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ  394 (701)
Q Consensus       320 ~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~  394 (701)
                      +..+..|.+.+.  +++.+.-     +.|.+|+|||..+...+..                             +-.|.+
T Consensus        36 lF~~~aH~~sit--avAVs~~~~aSGssDetI~IYDm~k~~qlg~-----------------------------ll~Hag   84 (362)
T KOG0294|consen   36 LFAFSAHAGSIT--ALAVSGPYVASGSSDETIHIYDMRKRKQLGI-----------------------------LLSHAG   84 (362)
T ss_pred             ccccccccccee--EEEecceeEeccCCCCcEEEEeccchhhhcc-----------------------------eecccc
Confidence            455688999999  8887755     8999999999987766555                             236777


Q ss_pred             -eEEEEEcCCCC--eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342          395 -SRESTSLPDAD--SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ  471 (701)
Q Consensus       395 -V~~l~~spdg~--~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  471 (701)
                       |+++.|.|+..  .|++|+.||.|.+|+..    .-.+..   ...+|.+.|+.++.+|.|+.-++.+.|+.++.||+-
T Consensus        85 sitaL~F~~~~S~shLlS~sdDG~i~iw~~~----~W~~~~---slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen   85 SITALKFYPPLSKSHLLSGSDDGHIIIWRVG----SWELLK---SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV  157 (362)
T ss_pred             ceEEEEecCCcchhheeeecCCCcEEEEEcC----CeEEee---eecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence             99999999876  89999999999999987    333333   456789999999999999999999999999999762


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeE
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIAT  549 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~  549 (701)
                      .+                  ..+.+. + +    ....+.+.|+  |.+++.+....|-+|.+.+......+.. +..+.
T Consensus       158 ~G------------------r~a~v~-~-L----~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l  212 (362)
T KOG0294|consen  158 RG------------------RVAFVL-N-L----KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-PKRIL  212 (362)
T ss_pred             cC------------------ccceee-c-c----CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-cccce
Confidence            22                  111121 1 2    2233458888  9989888877899999988776666552 34566


Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE--ecCCCEEEEEeCCCeEEEEECCCCeeeeeeeee
Q 005342          550 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY--SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH  627 (701)
Q Consensus       550 ~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~--spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~  627 (701)
                      ++.|...+.+++|.+|+.|.+||..+..+...+.+|..+|-++.+  .|++.+|+|+|.||.|+|||+....+.....+.
T Consensus       213 ~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~  292 (362)
T KOG0294|consen  213 CATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLA  292 (362)
T ss_pred             eeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeE
Confidence            777765559999999999999999999999999999999999974  467889999999999999999986443333443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=8.7e-21  Score=197.61  Aligned_cols=310  Identities=12%  Similarity=0.105  Sum_probs=221.1

Q ss_pred             EeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-
Q 005342          323 IKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-  394 (701)
Q Consensus       323 l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-  394 (701)
                      +.+|.++|.  ++.|+|.       +.|+++.+|-..+...+-.-          ...           .+.  .+|.. 
T Consensus       263 l~GHeDWV~--sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~----------~vR-----------lGe--~gg~a~  317 (764)
T KOG1063|consen  263 LMGHEDWVY--SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD----------VVR-----------LGE--VGGSAG  317 (764)
T ss_pred             hcCcccceE--EEEEccchhhheecccCcceEEEecCCccceEEE----------EEE-----------eec--cccccc
Confidence            448999999  9999999       89999999987766443220          000           000  12333 


Q ss_pred             -eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          395 -SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       395 -V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                       .+...|+|++..+++-+.-|..++|...+   ... +....-..+|.+.|.+++|+|.|.++++.|.|.+-+++-.-..
T Consensus       318 GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d---~~~-w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~  393 (764)
T KOG1063|consen  318 GFWGGLWSPNSNVIIAHGRTGGFHLWKTKD---KTF-WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR  393 (764)
T ss_pred             ceeeEEEcCCCCEEEEecccCcEEEEeccC---ccc-eeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence             88899999999999999999999999442   222 2222233589999999999999999999999999888754311


Q ss_pred             Cc---------cccccccce----------e------eEEe---------------------------------------
Q 005342          474 KQ---------SLEEENVNM----------E------SQLY---------------------------------------  489 (701)
Q Consensus       474 ~~---------~~g~~~~~~----------~------i~~~---------------------------------------  489 (701)
                      +.         .-|.....+          +      .++|                                       
T Consensus       394 q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa  473 (764)
T KOG1063|consen  394 QQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA  473 (764)
T ss_pred             ccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence            11         001000000          0      0111                                       


Q ss_pred             ----eCCCCeE----Ee---------------------ec-c-----cCCCCCCeEEEEec--CCEEEEEe-C-----Ce
Q 005342          490 ----QPSSKLV----MT---------------------ND-I-----AADPKDSISCFALR--GSHLFSAS-G-----GK  526 (701)
Q Consensus       490 ----d~~~~~~----~~---------------------~~-~-----~~~~~~~v~~l~~s--~~~l~s~s-d-----g~  526 (701)
                          +..+|..    ..                     .. +     ..+|...|++++.+  |+.+|+++ .     ..
T Consensus       474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAv  553 (764)
T KOG1063|consen  474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAV  553 (764)
T ss_pred             CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceE
Confidence                1111110    00                     00 0     02789999999999  99999886 3     46


Q ss_pred             EEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce----EEeecCCCCCeEEEEEecCCCEE
Q 005342          527 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVL  601 (701)
Q Consensus       527 I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~v~~spdg~~l  601 (701)
                      |++|+..+-..++.+.+|.-.|+.++||||| +|++.+.|.++.+|.......    ....+.|+.-|+++.|+|++.++
T Consensus       554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F  633 (764)
T KOG1063|consen  554 IRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF  633 (764)
T ss_pred             EEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccccee
Confidence            9999999988888999999999999999999 999999999999998754321    22356799999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-----CCEEEEE-ecCeEEEEECC
Q 005342          602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       602 ~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-----g~~l~sg-~Dg~I~iwd~~  666 (701)
                      ||+|.|.+|+||....+.-.+...+..+  .+.   ..|+.++|.|-     +..+++| ..|.|.+|...
T Consensus       634 aTaSRDK~VkVW~~~~~~d~~i~~~a~~--~~~---~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  634 ATASRDKKVKVWEEPDLRDKYISRFACL--KFS---LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             EEecCCceEEEEeccCchhhhhhhhchh--ccC---CceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            9999999999999988621111111101  122   88999999873     2255668 89999999964

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=6.5e-20  Score=189.95  Aligned_cols=266  Identities=13%  Similarity=0.123  Sum_probs=189.5

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS  378 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  378 (701)
                      +.+.+||..+++.+..+..+.. +.  +++|+|+        +.++.|++||..+++....          +.       
T Consensus        11 ~~v~~~d~~t~~~~~~~~~~~~-~~--~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~----------~~-------   70 (300)
T TIGR03866        11 NTISVIDTATLEVTRTFPVGQR-PR--GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT----------LP-------   70 (300)
T ss_pred             CEEEEEECCCCceEEEEECCCC-CC--ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe----------cc-------
Confidence            7899999999999999887654 67  8999998        5789999999998876554          11       


Q ss_pred             cCCCCCCCccccCCCceEEEEEcCCCCeEEEE-cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE
Q 005342          379 SGDDSNDSSCFNDNNQSRESTSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV  457 (701)
Q Consensus       379 ~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~-s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~  457 (701)
                                  .+..+..++|+|+|+.++++ +.++.+++||+.    +.+... .++   +...+.+++|+|+|+.++
T Consensus        71 ------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~----~~~~~~-~~~---~~~~~~~~~~~~dg~~l~  130 (300)
T TIGR03866        71 ------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIE----TRKVLA-EIP---VGVEPEGMAVSPDGKIVV  130 (300)
T ss_pred             ------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECC----CCeEEe-Eee---CCCCcceEEECCCCCEEE
Confidence                        12224568899999977654 568999999997    433222 111   223467899999999999


Q ss_pred             EEECCCc-EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEE-e-CCeEEEEeC
Q 005342          458 ALTQTAT-HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GGKISIFSL  532 (701)
Q Consensus       458 s~s~dg~-i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~-s-dg~I~iwd~  532 (701)
                      +++.++. +.+||                     ..++.......   ....+.+++|+  |++++++ . ++.|++||+
T Consensus       131 ~~~~~~~~~~~~d---------------------~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~  186 (300)
T TIGR03866       131 NTSETTNMAHFID---------------------TKTYEIVDNVL---VDQRPRFAEFTADGKELWVSSEIGGTVSVIDV  186 (300)
T ss_pred             EEecCCCeEEEEe---------------------CCCCeEEEEEE---cCCCccEEEECCCCCEEEEEcCCCCEEEEEEc
Confidence            8887654 55554                     44444432211   12345678888  7777544 4 899999999


Q ss_pred             CCCcEEEEecCCC-------CCeEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342          533 ETFQTLATFANPP-------PIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       533 ~~~~~~~~~~~~~-------~~i~~l~~spdg-~l-~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s  603 (701)
                      ++++.+..+..+.       .....++++|++ .+ ++...++.+.+||+++++.+..+. +...+.+++|+|+|++|++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~  265 (300)
T TIGR03866       187 ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLT  265 (300)
T ss_pred             CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEE
Confidence            9988776654221       123568899999 54 444556789999999988876654 4457899999999999887


Q ss_pred             E-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC
Q 005342          604 S-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP  647 (701)
Q Consensus       604 ~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp  647 (701)
                      + +.++.|++||+.+++.+.  .+.   .+     ...+.++++|
T Consensus       266 ~~~~~~~i~v~d~~~~~~~~--~~~---~~-----~~~~~~~~~~  300 (300)
T TIGR03866       266 TNGVSNDVSVIDVAALKVIK--SIK---VG-----RLPWGVVVRP  300 (300)
T ss_pred             EcCCCCeEEEEECCCCcEEE--EEE---cc-----cccceeEeCC
Confidence            6 468999999999986433  222   22     4458888775

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=1.3e-20  Score=177.66  Aligned_cols=267  Identities=12%  Similarity=0.110  Sum_probs=186.4

Q ss_pred             cCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCC---CCce-eE---ee-cCCCCCCCCEEEEEEec-CCCEEEE
Q 005342          390 NDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINE---PSEC-RT---LL-LPDNSFGGRVVRLIYSH-SGDFLVA  458 (701)
Q Consensus       390 ~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~---~~~~-~~---l~-~~~~~~~~~v~~l~~sp-dg~~l~s  458 (701)
                      ..|.+ |+++...| .|+++++|+.||.+.+||+++...   .+-+ ..   +. -...+|.-.|..+.|-| |.-.+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46778 99999977 699999999999999999985431   1111 11   01 11236778899999998 4446777


Q ss_pred             EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----CCEEEEEe-CCeEEEEeC
Q 005342          459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSL  532 (701)
Q Consensus       459 ~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~~~l~s~s-dg~I~iwd~  532 (701)
                      ++.|.+++|||.++                     -+.... +  ..++.|.+-++|     ...+++|. |-.|++.|+
T Consensus       120 sSFDhtlKVWDtnT---------------------lQ~a~~-F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi  175 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNT---------------------LQEAVD-F--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI  175 (397)
T ss_pred             ccccceEEEeeccc---------------------ceeeEE-e--ecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence            88899999997633                     221111 2  234567777776     34566666 789999999


Q ss_pred             CCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceE--------------EeecCCCCCeEEEEEe
Q 005342          533 ETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTK--------------AKLKGHQNRITCLAYS  595 (701)
Q Consensus       533 ~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~--------------~~l~~h~~~V~~v~~s  595 (701)
                      ..|...+++.||.+.|.++.|+|..  .+++|+.||.|++||++.. .+.              +.-..|.+.|+.++|+
T Consensus       176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence            9999999999999999999999999  8899999999999999753 111              1223478899999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeee
Q 005342          596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       596 pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l  674 (701)
                      .||.++++++.|..+++|+..+|+........ +  .|....+.-..+. +-+...++- -.++++.++++-.|..++.+
T Consensus       256 Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~-~--~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l  331 (397)
T KOG4283|consen  256 SDARYLASCGTDDRIRVWNMESGRNTLREFGP-I--IHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL  331 (397)
T ss_pred             ccchhhhhccCccceEEeecccCccccccccc-c--cccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEee
Confidence            99999999999999999999998633211111 1  1100001111133 333333332 25677888888777777777


Q ss_pred             ee----eeEEEEEe
Q 005342          675 LL----ISHIMFVQ  684 (701)
Q Consensus       675 ~~----i~~~~fs~  684 (701)
                      ..    |...+|-|
T Consensus       332 ~~h~k~i~c~~~~~  345 (397)
T KOG4283|consen  332 STHLKRINCAAYRP  345 (397)
T ss_pred             ecccceeeEEeecC
Confidence            66    55555543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=9.2e-22  Score=207.24  Aligned_cols=258  Identities=14%  Similarity=0.198  Sum_probs=194.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCC---CCCEEEEEEec-CCCEEEEEECCCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSF---GGRVVRLIYSH-SGDFLVALTQTATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~---~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~  470 (701)
                      .++++..++-..++.++. ..++++.++.......|..   .+...   .-.+..+.|.. +.++|++++.+|.|.+||+
T Consensus        42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~---~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNH---RFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             cceEeecCCcceeEEecc-cceeeEeeCcccCCcceee---ecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence            556777788888888887 5677887763222222221   11111   12344567764 4678999999999999988


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPP  546 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~  546 (701)
                      ...                  ..+..++ .+ ..|...+.++.|+   .++|++|+ ||.|++||++..+...++.+...
T Consensus       118 nk~------------------~rnk~l~-~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE  177 (839)
T KOG0269|consen  118 NKS------------------IRNKLLT-VF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE  177 (839)
T ss_pred             Ccc------------------ccchhhh-Hh-hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence            331                  0111211 12 4799999999999   88999999 99999999999999999998888


Q ss_pred             CeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342          547 IATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       547 ~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                      .|+.+.|+|..  .++++.+.|.+++||++.. +....+..|.++|.++.|+|++.+|||||.|+.|+|||+.+++....
T Consensus       178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~  257 (839)
T KOG0269|consen  178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK  257 (839)
T ss_pred             hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce
Confidence            99999999976  9999999999999999864 56677889999999999999999999999999999999998764443


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCE-EEEE---ecCeEEEEECCCCc-eeeeeee----eeEEEEEe
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIH-LLSI---HEGQIDVYEAPTLN-HTSQVLL----ISHIMFVQ  684 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~-l~sg---~Dg~I~iwd~~~g~-~~~~l~~----i~~~~fs~  684 (701)
                      ..+.   ..     .+|.+|.|-|+.++ ||++   .|..|+|||+..-= +-+++..    ++.++|..
T Consensus       258 ~tIn---Ti-----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  258 HTIN---TI-----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             eEEe---ec-----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence            4444   22     78999999998655 5553   68899999996532 3344443    77788853

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.7e-20  Score=178.52  Aligned_cols=286  Identities=13%  Similarity=0.078  Sum_probs=198.2

Q ss_pred             EEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       321 ~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      ..|++|.+.|+  +++||.|       +.|++|++|++........        +.+...              .-.+| 
T Consensus        80 ~~LKgH~~~vt--~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------r~~R~n--------------ve~dh-  134 (420)
T KOG2096|consen   80 SVLKGHKKEVT--DVAFSSDGKKLATISGDRSIRLWDVRDFENKEH--------RCIRQN--------------VEYDH-  134 (420)
T ss_pred             hhhhccCCcee--eeEEcCCCceeEEEeCCceEEEEecchhhhhhh--------hHhhcc--------------ccCCC-
Confidence            46799999999  9999999       8999999999976322111        000000              00122 


Q ss_pred             ceEEEEEcCCCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCC-----CCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          394 QSRESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPD-----NSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       394 ~V~~l~~spdg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-----~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                       -+.+.|+||-+.++ ++....++++|.+....+++-.......+     ..|.-.+..+-...++++|++++.|..|.+
T Consensus       135 -pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l  213 (420)
T KOG2096|consen  135 -PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL  213 (420)
T ss_pred             -ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence             45788999987655 45556789999886544433222111001     135566777888888999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC---CCc-----
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQ-----  536 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~---~~~-----  536 (701)
                      |++.                      |+.+.. +. .....-+..++|  |+++++++ ...|++|..-   .|.     
T Consensus       214 w~lk----------------------Gq~L~~-id-tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~  269 (420)
T KOG2096|consen  214 WDLK----------------------GQLLQS-ID-TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVK  269 (420)
T ss_pred             EecC----------------------Cceeee-ec-cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhh
Confidence            9763                      333221 11 112233455667  89999888 7889999852   232     


Q ss_pred             EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-------CceEEeec----CCCCCeEEEEEecCCCEEEEE
Q 005342          537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-------KKTKAKLK----GHQNRITCLAYSLSLNVLVSS  604 (701)
Q Consensus       537 ~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~-------~~~~~~l~----~h~~~V~~v~~spdg~~l~s~  604 (701)
                      .+..+.||.+.|..++|+|+. .+++.|.||++++||..-       .+.+++..    .-.+....++.+|.|+.||.+
T Consensus       270 rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s  349 (420)
T KOG2096|consen  270 RVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS  349 (420)
T ss_pred             hhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee
Confidence            345678999999999999999 999999999999999752       12222221    112233489999999988754


Q ss_pred             eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342          605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  665 (701)
Q Consensus       605 s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~  665 (701)
                      . ...++++..++|+..     ..+..-|.   ..|.+++|+|+|++++++.|..++++.-
T Consensus       350 ~-gs~l~~~~se~g~~~-----~~~e~~h~---~~Is~is~~~~g~~~atcGdr~vrv~~n  401 (420)
T KOG2096|consen  350 F-GSDLKVFASEDGKDY-----PELEDIHS---TTISSISYSSDGKYIATCGDRYVRVIRN  401 (420)
T ss_pred             c-CCceEEEEcccCccc-----hhHHHhhc---CceeeEEecCCCcEEeeecceeeeeecC
Confidence            4 568999999998532     22444554   8899999999999999999999998763

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.88  E-value=5.7e-21  Score=199.11  Aligned_cols=240  Identities=14%  Similarity=0.125  Sum_probs=198.6

Q ss_pred             CcccccccCcccee--EEEeecCcceeeeE-EEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342          307 DKLKFPSMDKSRLL--SLIKQIMDWWVPYC-INVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL  375 (701)
Q Consensus       307 ~~i~iwd~~~~~~~--~~l~~h~~~v~~~~-l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (701)
                      +++++|+-...+.+  +.+.+|.+.+.  + ++|-+.        +.|.++.+|.......+.+                
T Consensus        35 ~t~~vw~~~~~~~l~~~~~~~~~g~i~--~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~----------------   96 (745)
T KOG0301|consen   35 GTVKVWAKKGKQYLETHAFEGPKGFIA--NSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT----------------   96 (745)
T ss_pred             CceeeeeccCcccccceecccCcceee--ccceeccccCcceEeecccceEEEEecCCCCchhh----------------
Confidence            88999987555444  56788999888  5 777762        8899999998877766655                


Q ss_pred             ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC
Q 005342          376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD  454 (701)
Q Consensus       376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~  454 (701)
                                   |++|.. |.+++...++. +++||.|.++++|...      ++..   ...+|...|++++.-|++ 
T Consensus        97 -------------LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~------~l~~---~l~gH~asVWAv~~l~e~-  152 (745)
T KOG0301|consen   97 -------------LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG------ELVY---SLQGHTASVWAVASLPEN-  152 (745)
T ss_pred             -------------hhccccceeeeecCCcCc-eEecccccceEEecch------hhhc---ccCCcchheeeeeecCCC-
Confidence                         467888 99999888888 9999999999999975      3333   345799999999999999 


Q ss_pred             EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeC
Q 005342          455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSL  532 (701)
Q Consensus       455 ~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~  532 (701)
                      .+++||.|.+|++|+                       .++++.. + .+|.+.|+.+++- +..+++++ ||.|++|++
T Consensus       153 ~~vTgsaDKtIklWk-----------------------~~~~l~t-f-~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~  207 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWK-----------------------GGTLLKT-F-SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL  207 (745)
T ss_pred             cEEeccCcceeeecc-----------------------CCchhhh-h-ccchhheeeeEEecCCCeEeecCCceEEEEec
Confidence            679999999999993                       3444432 4 4899999999998 77888888 999999999


Q ss_pred             CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342          533 ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC  611 (701)
Q Consensus       533 ~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~  611 (701)
                       +|..+.++.+|..-+++++..+++ .|+++++|++++||+..  ++.+.+.-....|+++.+-++|. +++|+.||.||
T Consensus       208 -~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~Vr  283 (745)
T KOG0301|consen  208 -DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVR  283 (745)
T ss_pred             -cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEE
Confidence             889999999999999999977766 99999999999999965  77777774445899999988887 66788899999


Q ss_pred             EEECCC
Q 005342          612 VWDAVG  617 (701)
Q Consensus       612 vwd~~~  617 (701)
                      ||....
T Consensus       284 VfT~~k  289 (745)
T KOG0301|consen  284 VFTVDK  289 (745)
T ss_pred             EEEecc
Confidence            998764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=2.1e-20  Score=177.96  Aligned_cols=256  Identities=12%  Similarity=0.103  Sum_probs=193.6

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |+++.|+|.+..|+.++.||++++|++..    .....   .+ .|..++.+++|.++. .+++|+.||.|+.+|++++ 
T Consensus        16 IS~v~f~~~~~~LLvssWDgslrlYdv~~----~~l~~---~~-~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~-   85 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPA----NSLKL---KF-KHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTG-   85 (323)
T ss_pred             eeeEEEcCcCCcEEEEeccCcEEEEeccc----hhhhh---he-ecCCceeeeeccCCc-eEEEeccCceEEEEEecCC-
Confidence            99999999999999999999999999973    22111   11 278999999999754 5899999999999977432 


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF  551 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l  551 (701)
                                        ....+     ..|..+|.|+..+  .+.+++|+ |++|++||.+.......+. ....|.++
T Consensus        86 ------------------~~~~i-----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~  141 (323)
T KOG1036|consen   86 ------------------NEDQI-----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCM  141 (323)
T ss_pred             ------------------cceee-----ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEE
Confidence                              11222     4689999999999  77889999 9999999998766666665 34478887


Q ss_pred             EEcCCCeEEEEeCCCcEEEEeCCCCceEEeec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe----eeeeee
Q 005342          552 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK----KLCSKF  625 (701)
Q Consensus       552 ~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~----~~~~~~  625 (701)
                      ..+.+ .|++|+.|..+.+||+++.......+  .-+-.+.++++-|++.=.|.+|-||+|.+=.+...+    +.....
T Consensus       142 ~v~g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk  220 (323)
T KOG1036|consen  142 DVSGN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK  220 (323)
T ss_pred             eccCC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence            77654 89999999999999999865433221  233468999999988878889999999987776641    111111


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEee
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~  685 (701)
                      -+.........-.+|++++|+|-...+|+| .||.|.+||+.+.+.++.+..    |.+++|+.+
T Consensus       221 CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~d  285 (323)
T KOG1036|consen  221 CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMD  285 (323)
T ss_pred             eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccC
Confidence            110111111112579999999999999996 899999999999988888877    888998755

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=7.6e-21  Score=189.49  Aligned_cols=264  Identities=12%  Similarity=0.109  Sum_probs=203.6

Q ss_pred             CCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEEe
Q 005342          391 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd  469 (701)
                      .|.+|+++.|||....+++|+.|++++||.++..... .+..+.+    ...+|.+..|.|+|. .+++++....++.||
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD  286 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD  286 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeee----ccCccceeeecCCCceEEEecccceEEEEee
Confidence            3555999999999999999999999999999621111 1222222    467899999999999 888888899999997


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCC-CCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP  545 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~  545 (701)
                      +.+.                     ++.......++ ...+..+.++  +++|+..+ .|.|++.-..+++.+.++. ..
T Consensus       287 le~a---------------------k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ie  344 (514)
T KOG2055|consen  287 LETA---------------------KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IE  344 (514)
T ss_pred             cccc---------------------ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-ec
Confidence            7443                     22110011122 2345667777  88999988 8999999999999999887 67


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEECCCCee-ee
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LC  622 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~-~~  622 (701)
                      +.|..++|+.|| .|++.+.+|.|++||++...+++++....+ .-++++.|++|.|||+||+.|.|.|||..+-.. ..
T Consensus       345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN  424 (514)
T ss_pred             cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC
Confidence            789999999999 888888899999999999999998874222 336678889999999999999999999765210 01


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E--ecCeEEEEECCCCceeeeeee-------eeEEEEEee
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQVLL-------ISHIMFVQI  685 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g--~Dg~I~iwd~~~g~~~~~l~~-------i~~~~fs~~  685 (701)
                      .+++.++..-.    ..|++++|+||++.||. +  .++.+++-.+.+......+|.       |++++|||-
T Consensus       425 PkPik~~dNLt----t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~  493 (514)
T KOG2055|consen  425 PKPIKTVDNLT----TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN  493 (514)
T ss_pred             CCchhhhhhhh----eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC
Confidence            23333332222    78999999999999886 3  588999999999998888886       999999984

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=2.3e-20  Score=177.22  Aligned_cols=255  Identities=12%  Similarity=0.102  Sum_probs=186.0

Q ss_pred             eecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-e
Q 005342          324 KQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-S  395 (701)
Q Consensus       324 ~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V  395 (701)
                      .+|.+.|.  |+.|.+.       +.|++++|||...+..--.          .               ...-+.|.+ |
T Consensus        10 s~h~Dlih--dVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~----------~---------------Ts~Wrah~~Si   62 (361)
T KOG2445|consen   10 SGHKDLIH--DVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWS----------C---------------TSSWRAHDGSI   62 (361)
T ss_pred             cCCcceee--eeeecccCceeeeccCCCcEEEEeccCCCCceE----------E---------------eeeEEecCCcE
Confidence            57888899  9999887       8999999999755443222          0               111467888 9


Q ss_pred             EEEEEc-C-CCCeEEEEcCCCcEEEEecccc--CCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcEEEEe
Q 005342          396 RESTSL-P-DADSAVCAKSLEKSVNLKLQLI--NEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWK  469 (701)
Q Consensus       396 ~~l~~s-p-dg~~l~s~s~d~~v~iw~~~~~--~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~vwd  469 (701)
                      +.+.|. | -|+.+|+++.|+++.||.-...  ...+..+...-........|+++.|.|.  |-.+++++.||.++||+
T Consensus        63 ~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE  142 (361)
T KOG2445|consen   63 WRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE  142 (361)
T ss_pred             EEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence            999995 4 4999999999999999986322  2222222222223446789999999995  66889999999999997


Q ss_pred             cCCCCccccccccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEec-----CCEEEEEeCC------eEEEEeCCCC--
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALR-----GSHLFSASGG------KISIFSLETF--  535 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s-----~~~l~s~sdg------~I~iwd~~~~--  535 (701)
                      .-..          ..+.-|.+.... .+.. ....+..+..|+.|+     ..+|++|+|.      .+.||....+  
T Consensus       143 A~dp----------~nLs~W~Lq~Ei~~~~~-pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r  211 (361)
T KOG2445|consen  143 APDP----------MNLSQWTLQHEIQNVID-PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR  211 (361)
T ss_pred             cCCc----------cccccchhhhhhhhccC-CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc
Confidence            5221          112223322211 1110 112456678889998     5578888854      8889886543  


Q ss_pred             --cEEEEecCCCCCeEEEEEcCCC-----eEEEEeCCCcEEEEeCCCC--------------------ceEEeecCCCCC
Q 005342          536 --QTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCTK--------------------KTKAKLKGHQNR  588 (701)
Q Consensus       536 --~~~~~~~~~~~~i~~l~~spdg-----~l~~gs~dg~I~iwd~~~~--------------------~~~~~l~~h~~~  588 (701)
                        ..+.++.+|..+|+.++|.|+-     .||+++.|| |+||.++..                    +.+..+.+|++.
T Consensus       212 Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~  290 (361)
T KOG2445|consen  212 KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE  290 (361)
T ss_pred             eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence              2456778899999999999974     899999999 999998731                    235567789999


Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          589 ITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       589 V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      |..+.|+-.|..|+|.|+||.||+|...-
T Consensus       291 VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  291 VWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             eEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            99999999999999999999999998764

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.4e-22  Score=211.66  Aligned_cols=245  Identities=18%  Similarity=0.198  Sum_probs=202.0

Q ss_pred             CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342          402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN  481 (701)
Q Consensus       402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~  481 (701)
                      |.+.+++.+..+-.+++|+..+             ...|...|.++..-..++.+++|+.|..+.+|.+...        
T Consensus         2 ~~~~~~m~~~~~t~Lr~~~~~~-------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--------   60 (825)
T KOG0267|consen    2 PGMEFLMKTKRATKLRVWDTRE-------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--------   60 (825)
T ss_pred             Ccccccceeeeeeccccccchh-------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCC--------
Confidence            3344555666666778888751             1236778888888778889999999999999965221        


Q ss_pred             cceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-
Q 005342          482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-  557 (701)
Q Consensus       482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-  557 (701)
                             |.     .+.  + .+|..+|.++.|+  ...|++|+ +|+|++||++.++.++++.+|...+.++.|+|-+ 
T Consensus        61 -------~~-----i~S--~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~  125 (825)
T KOG0267|consen   61 -------NA-----ITS--L-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE  125 (825)
T ss_pred             -------ch-----hhe--e-eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE
Confidence                   01     111  2 4799999999999  55666677 8999999999999999999999999999999999 


Q ss_pred             eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342          558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET  637 (701)
Q Consensus       558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~  637 (701)
                      +.|.|+.|+.+.+||++...+.+.+.+|...|..+.|+|+|+++++|++|.+++|||...|+..     .++. +|.   
T Consensus       126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-----~ef~-~~e---  196 (825)
T KOG0267|consen  126 FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-----KEFK-SHE---  196 (825)
T ss_pred             EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-----cccc-ccc---
Confidence            9999999999999999988899999999999999999999999999999999999999998532     2122 444   


Q ss_pred             CCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEEeeee
Q 005342          638 TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVVKFHS  691 (701)
Q Consensus       638 ~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~~f~~  691 (701)
                      +.+.++.|+|..-++++| .|+++++||+++.+.+.....    |.+.+|+|+...+..
T Consensus       197 ~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~  255 (825)
T KOG0267|consen  197 GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS  255 (825)
T ss_pred             ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec
Confidence            889999999998888886 899999999999888877766    999999988776654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.2e-19  Score=187.06  Aligned_cols=216  Identities=9%  Similarity=0.052  Sum_probs=162.1

Q ss_pred             CcccccccCccce-eEEEeecCc-ceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342          307 DKLKFPSMDKSRL-LSLIKQIMD-WWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS  378 (701)
Q Consensus       307 ~~i~iwd~~~~~~-~~~l~~h~~-~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  378 (701)
                      +.|.||++.++-+ ...+.++.+ .|.  .++|++.      +.+|.|.-||+.+++....+          +       
T Consensus        47 g~IEiwN~~~~w~~~~vi~g~~drsIE--~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~----------d-------  107 (691)
T KOG2048|consen   47 GNIEIWNLSNNWFLEPVIHGPEDRSIE--SLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNI----------D-------  107 (691)
T ss_pred             CcEEEEccCCCceeeEEEecCCCCcee--eEEEccCCeEEeecCCceEEEEecccCceeEEe----------c-------
Confidence            8999999988744 456676654 577  9999977      88999999999999887762          1       


Q ss_pred             cCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE
Q 005342          379 SGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV  457 (701)
Q Consensus       379 ~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~  457 (701)
                                  ...+ ||+++.+|.++.++.|+.||.+..++..    ++.+..-. .+...+++|.++.|+|++..++
T Consensus       108 ------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~----p~~I~~~r-~l~rq~sRvLslsw~~~~~~i~  170 (691)
T KOG2048|consen  108 ------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIG----PDKITYKR-SLMRQKSRVLSLSWNPTGTKIA  170 (691)
T ss_pred             ------------CCCcceeEEEeCCccceEEeecCCceEEEEecC----CceEEEEe-ecccccceEEEEEecCCccEEE
Confidence                        1223 9999999999999999999977777776    44432211 2233468999999999999999


Q ss_pred             EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCC
Q 005342          458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETF  535 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~  535 (701)
                      +|+.||.|++||...+..          +++   .+.++..  +.+....-|+++.+- .+.|++|. .|+|.+||...+
T Consensus       171 ~Gs~Dg~Iriwd~~~~~t----------~~~---~~~~~d~--l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  171 GGSIDGVIRIWDVKSGQT----------LHI---ITMQLDR--LSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             ecccCceEEEEEcCCCce----------EEE---eeecccc--cccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc
Confidence            999999999997744321          000   0000110  111223345555555 88899998 799999999999


Q ss_pred             cEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 005342          536 QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP  573 (701)
Q Consensus       536 ~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~  573 (701)
                      ..++.+..|...|.+++..+++ .+.+++.|+.|.-|..
T Consensus       236 TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~  274 (691)
T KOG2048|consen  236 TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL  274 (691)
T ss_pred             chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence            9999999999999999999998 8888888887766554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=6.9e-21  Score=175.17  Aligned_cols=243  Identities=12%  Similarity=0.133  Sum_probs=182.4

Q ss_pred             eecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEE
Q 005342          324 KQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRE  397 (701)
Q Consensus       324 ~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~  397 (701)
                      .+|.+.|....+.|...     +.|++|+|+.+........                          ..-|.||.+ |+.
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~l--------------------------l~~L~Gh~GPVwq   61 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKL--------------------------LAELTGHSGPVWK   61 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCcee--------------------------eeEecCCCCCeeE
Confidence            34666555333444444     8899999999876654332                          223678999 999


Q ss_pred             EEEcC--CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcEEEEecCCC
Q 005342          398 STSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       398 l~~sp--dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~vwd~~~~  473 (701)
                      ++|..  -|.+||+++.||.|.||.-.    .++..+ ......|...|.+++|.|.  |-.|++++.||.|.|.+.+. 
T Consensus        62 v~wahPk~G~iLAScsYDgkVIiWke~----~g~w~k-~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~-  135 (299)
T KOG1332|consen   62 VAWAHPKFGTILASCSYDGKVIIWKEE----NGRWTK-AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS-  135 (299)
T ss_pred             EeecccccCcEeeEeecCceEEEEecC----CCchhh-hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC-
Confidence            99954  79999999999999999987    443222 2233468999999999997  45788999999999997733 


Q ss_pred             CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----C-----------CEEEEEe-CCeEEEEeCCCCc
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----G-----------SHLFSAS-GGKISIFSLETFQ  536 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~-----------~~l~s~s-dg~I~iwd~~~~~  536 (701)
                                        +.+....+ +...|.-.|++++|.     |           ..|++|+ |..|+||+...+.
T Consensus       136 ------------------~g~w~t~k-i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~  196 (299)
T KOG1332|consen  136 ------------------SGGWTTSK-IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS  196 (299)
T ss_pred             ------------------CCCccchh-hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc
Confidence                              22222211 334688888888887     2           5689999 9999999997763


Q ss_pred             --EEEEecCCCCCeEEEEEcCCC-----eEEEEeCCCcEEEEeCCCC--c-eEEeecCCCCCeEEEEEecCCCEEEEEeC
Q 005342          537 --TLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCTK--K-TKAKLKGHQNRITCLAYSLSLNVLVSSGA  606 (701)
Q Consensus       537 --~~~~~~~~~~~i~~l~~spdg-----~l~~gs~dg~I~iwd~~~~--~-~~~~l~~h~~~V~~v~~spdg~~l~s~s~  606 (701)
                        ..+++.+|...|+.++|.|.-     .||+++.||++.||-.+..  . ....++.....+.++.||+.|+.|+.++.
T Consensus       197 w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G  276 (299)
T KOG1332|consen  197 WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG  276 (299)
T ss_pred             hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC
Confidence              455688999999999999974     8999999999999986632  1 11222334567999999999999999999


Q ss_pred             CCeEEEEECCC
Q 005342          607 DAQLCVWDAVG  617 (701)
Q Consensus       607 D~~I~vwd~~~  617 (701)
                      |+.|.+|.-..
T Consensus       277 dNkvtlwke~~  287 (299)
T KOG1332|consen  277 DNKVTLWKENV  287 (299)
T ss_pred             CcEEEEEEeCC
Confidence            99999997543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1e-19  Score=173.42  Aligned_cols=235  Identities=14%  Similarity=0.155  Sum_probs=179.1

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC--EEEEEECCCcE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD--FLVALTQTATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~i  465 (701)
                      +..|.. +++++.+  |.++|+|+.|.+|+|||+......+.+.       .|.+.|+++.|.++-.  .|++|+.||.|
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll-------~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL-------SHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-------ccccceEEEEecCCcchhheeeecCCCcE
Confidence            457888 9999884  7899999999999999998433333222       3899999999999875  89999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      .+|+.                     .+-.++.. + ++|.+.|+.++++  |+..++.+ |+.++.||+-+|+.-....
T Consensus       110 ~iw~~---------------------~~W~~~~s-l-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~  166 (362)
T KOG0294|consen  110 IIWRV---------------------GSWELLKS-L-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN  166 (362)
T ss_pred             EEEEc---------------------CCeEEeee-e-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec
Confidence            99965                     33333332 3 5788899999999  77666666 9999999998887554443


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                       -....+.+.|+|.| +++.+..+ .|-+|.+.+..+...+. ....+.++.|- ++..|++|++|+.|.+||..++.  
T Consensus       167 -L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~--  240 (362)
T KOG0294|consen  167 -LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDT--  240 (362)
T ss_pred             -cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCc--
Confidence             23344569999999 77777665 68899888877665554 22456676664 67789999999999999999853  


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEE--cCCCCEEEE-EecCeEEEEECCCC
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQF--HPDQIHLLS-IHEGQIDVYEAPTL  668 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~--spdg~~l~s-g~Dg~I~iwd~~~g  668 (701)
                         ++..+. +|.   ..|-++.+  .|++.+|++ |+||.|+|||++..
T Consensus       241 ---~~~~~~-AH~---~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  241 ---PLTEFL-AHE---NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ---cceeee-cch---hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence               333233 554   88988874  567888988 69999999999765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.86  E-value=1.7e-20  Score=176.78  Aligned_cols=216  Identities=19%  Similarity=0.230  Sum_probs=169.7

Q ss_pred             CCCCEEEEEEec-CCCEEEEEECCCcEEEEecCCCCc--cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-
Q 005342          440 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ--SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-  515 (701)
Q Consensus       440 ~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~--~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-  515 (701)
                      |.+.|.++...+ .|+++++|+.||.+.+||++....  ..+......          ..+.+.-+.+|+..|.++.|- 
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~----------c~v~~~h~~~Hky~iss~~WyP  111 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHK----------CIVAKQHENGHKYAISSAIWYP  111 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehee----------eeccccCCccceeeeeeeEEee
Confidence            778899999887 589999999999999999966542  111111100          011122234788899999987 


Q ss_pred             --CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCCCCC
Q 005342          516 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR  588 (701)
Q Consensus       516 --~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~  588 (701)
                        ..++.+++ |.++++||.+|.+....|. .++.|.+-++||-.    +||+|..|-.|++-|+.+|..-+++.||.+.
T Consensus       112 ~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~  190 (397)
T KOG4283|consen  112 IDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG  190 (397)
T ss_pred             ecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence              55777888 9999999999998888887 67789999999865    8999999999999999999999999999999


Q ss_pred             eEEEEEecCCC-EEEEEeCCCeEEEEECCCCeeeeeeeee----------eccCCCCCCCCCeEEEEEcCCCCEEEE-Ee
Q 005342          589 ITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLH----------SFQTGLVPETTIVNHIQFHPDQIHLLS-IH  656 (701)
Q Consensus       589 V~~v~~spdg~-~l~s~s~D~~I~vwd~~~g~~~~~~~l~----------~~~~~~~~~~~~v~~v~~spdg~~l~s-g~  656 (701)
                      |.++.|+|... .|++||.||.|++||++... -|...+.          +....|   .+.|++++|+.||.++++ |.
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRras-gcf~~lD~hn~k~~p~~~~n~ah---~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRAS-GCFRVLDQHNTKRPPILKTNTAH---YGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             eEEEEeccCceeEEEecCCCceEEEEEeeccc-ceeEEeecccCccCccccccccc---cceeeeeeecccchhhhhccC
Confidence            99999999776 56899999999999998631 0111111          011223   388999999999999998 68


Q ss_pred             cCeEEEEECCCCce
Q 005342          657 EGQIDVYEAPTLNH  670 (701)
Q Consensus       657 Dg~I~iwd~~~g~~  670 (701)
                      |..+++|+..+|+.
T Consensus       267 d~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  267 DDRIRVWNMESGRN  280 (397)
T ss_pred             ccceEEeecccCcc
Confidence            99999999998864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=2.4e-20  Score=186.93  Aligned_cols=253  Identities=14%  Similarity=0.134  Sum_probs=193.6

Q ss_pred             eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          395 SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       395 V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                      +.++.|+.... .+++.+.|..+++|.-...  ++++..+..   .....-.|++......|+++|+..+.|+|||+   
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k---~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl---  108 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRK---LTGDNAFCVACASQSLYEISGGQSGCVKIWDL---  108 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCC--CCccceeec---cccchHHHHhhhhcceeeeccCcCceeeehhh---
Confidence            88999987754 3344567888999986521  222222221   12234556666666689999999999999976   


Q ss_pred             CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC-CCCeE
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-PPIAT  549 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~-~~~i~  549 (701)
                                        ....+..  +..+|...|+++.++  +.+|++++ .|.|.+..+.++....+|... ...+.
T Consensus       109 ------------------~~kl~hr--~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR  168 (673)
T KOG4378|consen  109 ------------------RAKLIHR--FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR  168 (673)
T ss_pred             ------------------HHHHHhh--hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence                              3222332  336899999999999  99999999 799999999999887777644 44567


Q ss_pred             EEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342          550 YFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF  625 (701)
Q Consensus       550 ~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~  625 (701)
                      -+.++|..  ++.+++.+|.|.+||+....++..+. .|..+...++|+| +..+||+.+.|.+|++||..+.+.  ...
T Consensus       169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s--~~~  246 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS--TDR  246 (673)
T ss_pred             EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc--cce
Confidence            89999998  88899999999999998877776554 5999999999999 556889999999999999997542  222


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC-ceeeeeee----eeEEEEEee
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL-NHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g-~~~~~l~~----i~~~~fs~~  685 (701)
                      +.   ..     .+...++|+++|.+|++| ..|.|..||++.. .+++++..    |++++|-|.
T Consensus       247 l~---y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  247 LT---YS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             ee---ec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            22   11     678999999999999998 7999999999754 45666665    999999655

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=9.5e-20  Score=173.36  Aligned_cols=274  Identities=15%  Similarity=0.171  Sum_probs=195.2

Q ss_pred             eeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCC
Q 005342          332 PYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPD  403 (701)
Q Consensus       332 ~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spd  403 (701)
                      ..|+.||+.       ..||.|.|||..|...-+.                             |.+|.. |.+++||+|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~-----------------------------lsaH~~pi~sl~WS~d   76 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARM-----------------------------LSAHVRPITSLCWSRD   76 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhh-----------------------------hhccccceeEEEecCC
Confidence            449999998       7899999999987664443                             456777 999999999


Q ss_pred             CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCE-EEEEECCCcEEEEecCCCCcccccccc
Q 005342          404 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENV  482 (701)
Q Consensus       404 g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~-l~s~s~dg~i~vwd~~~~~~~~g~~~~  482 (701)
                      |+.|+|++.|..+.+||+..   +...+++.+     ..+|+.+.|+|-.+. .+++-.+..-.+-++.           
T Consensus        77 gr~LltsS~D~si~lwDl~~---gs~l~rirf-----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s-----------  137 (405)
T KOG1273|consen   77 GRKLLTSSRDWSIKLWDLLK---GSPLKRIRF-----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFS-----------  137 (405)
T ss_pred             CCEeeeecCCceeEEEeccC---CCceeEEEc-----cCccceeeeccccCCeEEEEEecCCcEEEEec-----------
Confidence            99999999999999999983   222344444     688999999996543 3333334444444431           


Q ss_pred             ceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC-CCeEEEEEcCCC-
Q 005342          483 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-  557 (701)
Q Consensus       483 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~spdg-  557 (701)
                              .....++.+.-.........+..|.  |+++++|. .|.+.++|..+.+++..++-.. ..|.++.++..| 
T Consensus       138 --------~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~  209 (405)
T KOG1273|consen  138 --------DPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR  209 (405)
T ss_pred             --------CCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc
Confidence                    1111222211000011111122455  99999999 8999999999999998887555 789999999999 


Q ss_pred             eEEEEeCCCcEEEEeCCC-------Cc--eEEeecC--CCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCeeeeeee
Q 005342          558 LFAFGFDDSSILVHCPCT-------KK--TKAKLKG--HQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKF  625 (701)
Q Consensus       558 ~l~~gs~dg~I~iwd~~~-------~~--~~~~l~~--h~~~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~g~~~~~~~  625 (701)
                      ++++.+.|..|+.|+++.       ++  +.+++..  .+-.-.+++||.+|.|++.++. ...++||....|.++  +.
T Consensus       210 ~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV--KI  287 (405)
T KOG1273|consen  210 FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV--KI  287 (405)
T ss_pred             EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCccee--ee
Confidence            999999999999999863       11  1222222  2234567899999999887664 568999999998744  33


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN  669 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~  669 (701)
                      ++    |..+  .....+.|+|-...+++-..|.++||....-+
T Consensus       288 Lh----G~kg--E~l~DV~whp~rp~i~si~sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  288 LH----GTKG--EELLDVNWHPVRPIIASIASGVVYIWAVVQVE  325 (405)
T ss_pred             ec----CCch--hheeecccccceeeeeeccCCceEEEEeeccc
Confidence            33    4321  45678999999888888789999999875443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.2e-19  Score=193.07  Aligned_cols=254  Identities=15%  Similarity=0.142  Sum_probs=197.5

Q ss_pred             ecCcceeeeEEEEccC-------CCCCeEEEEeccCC-ccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-e
Q 005342          325 QIMDWWVPYCINVMPN-------ANNETISLKDFPTV-SNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-S  395 (701)
Q Consensus       325 ~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V  395 (701)
                      .|+..-.  .++|.|+       +.|+.|++|+.... +....+                             ..+.. |
T Consensus        11 aht~G~t--~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-----------------------------~~~g~~v   59 (933)
T KOG1274|consen   11 AHTGGLT--LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-----------------------------DISGELV   59 (933)
T ss_pred             hccCceE--EEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-----------------------------hccCcee
Confidence            5666667  8888888       89999999987654 222221                             11333 5


Q ss_pred             EEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342          396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  475 (701)
                      .+++-  ++.+|++|+.+++|..+.+.+....+-+-++       +-++.+++++.+|++++.||.|-.|++-+.     
T Consensus        60 ~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf-------tlp~r~~~v~g~g~~iaagsdD~~vK~~~~-----  125 (933)
T KOG1274|consen   60 SSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARF-------TLPIRDLAVSGSGKMIAAGSDDTAVKLLNL-----  125 (933)
T ss_pred             EEEee--cccceEEeeccceEEEeeCCCCCccceeeee-------eccceEEEEecCCcEEEeecCceeEEEEec-----
Confidence            55444  5559999999999999999855444433332       457899999999999999999999999876     


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC--------
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP--------  544 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~--------  544 (701)
                                    +-.+.+..   + .+|..+|.++.++  +++||+.+ ||.|++||+.++.+..++.+-        
T Consensus       126 --------------~D~s~~~~---l-rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~  187 (933)
T KOG1274|consen  126 --------------DDSSQEKV---L-RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL  187 (933)
T ss_pred             --------------cccchhee---e-cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc
Confidence                          22333333   2 5899999999999  99999998 999999999998877666432        


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      ...++.++|+|+| .+++...|+.|.+|+..+.+....+++  |.+.+..+.|+|.|+|||+++.||.|-|||+.+-+  
T Consensus       188 s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~--  265 (933)
T KOG1274|consen  188 SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE--  265 (933)
T ss_pred             cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch--
Confidence            3345789999998 888889999999999999998888876  44569999999999999999999999999999832  


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                       .+...          ..|.+++|.|+...+-.
T Consensus       266 -~~~~~----------~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  266 -RHEFK----------RAVCCEAWKPNANAITL  287 (933)
T ss_pred             -hcccc----------ceeEEEecCCCCCeeEE
Confidence             11111          77999999999876543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=3e-20  Score=190.39  Aligned_cols=286  Identities=15%  Similarity=0.200  Sum_probs=210.6

Q ss_pred             cceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342          317 SRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF  389 (701)
Q Consensus       317 ~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l  389 (701)
                      .+|-..+.+|++.|.  |++-.|.       +.||+++||.+.||.|+++.                             
T Consensus       390 t~~~lvyrGHtg~Vr--~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-----------------------------  438 (733)
T KOG0650|consen  390 TRCALVYRGHTGLVR--SISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-----------------------------  438 (733)
T ss_pred             ceeeeeEeccCCeEE--EEEecCCcceeeecCCCCcEEEEEeecceEEEEE-----------------------------
Confidence            456677899999999  8777776       89999999999999999983                             


Q ss_pred             cCCCc-eEEEEEcCCCC--eEEEEcCCCcEEEEecc---------------------------------ccCC--CCcee
Q 005342          390 NDNNQ-SRESTSLPDAD--SAVCAKSLEKSVNLKLQ---------------------------------LINE--PSECR  431 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~--~l~s~s~d~~v~iw~~~---------------------------------~~~~--~~~~~  431 (701)
                       .-.. |.+++|+|.+.  .||.+-.+. +.|-+..                                 ....  .+-|.
T Consensus       439 -~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~  516 (733)
T KOG0650|consen  439 -QFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI  516 (733)
T ss_pred             -eecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEE
Confidence             1123 88999998765  344433322 3333321                                 1000  01011


Q ss_pred             EeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCC
Q 005342          432 TLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS  508 (701)
Q Consensus       432 ~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  508 (701)
                      .+     .|...|..+.|+..|.||++...+   ..|.|.++                     ....... .+ ....+.
T Consensus       517 ~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL---------------------SK~~sQ~-PF-~kskG~  568 (733)
T KOG0650|consen  517 VI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL---------------------SKRKSQS-PF-RKSKGL  568 (733)
T ss_pred             EE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEec---------------------ccccccC-ch-hhcCCc
Confidence            11     367889999999999999988764   45666654                     2222111 12 134567


Q ss_pred             eEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CceEEeecC
Q 005342          509 ISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKG  584 (701)
Q Consensus       509 v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~-~~~~~~l~~  584 (701)
                      |.++.|+  ..++++++-..|++||+.....+.++......|.+++++|.| .|++|+.|+.+..+|+.- .++.++++.
T Consensus       569 vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~  648 (733)
T KOG0650|consen  569 VQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL  648 (733)
T ss_pred             eeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh
Confidence            8899999  778888888899999998888888777677789999999999 999999999999999975 467788889


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee----eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCe
Q 005342          585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL----CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ  659 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~----~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~  659 (701)
                      |...+++|+|++.-.++++|++||++.|+.-.-..-.    ...++..+.++.......|..+.|+|...+|++ |.||+
T Consensus       649 H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~t  728 (733)
T KOG0650|consen  649 HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGT  728 (733)
T ss_pred             hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCce
Confidence            9999999999999999999999999999964321000    123455344333323356889999999999998 58999


Q ss_pred             EEEE
Q 005342          660 IDVY  663 (701)
Q Consensus       660 I~iw  663 (701)
                      |++|
T Consensus       729 irlf  732 (733)
T KOG0650|consen  729 IRLF  732 (733)
T ss_pred             EEee
Confidence            9998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2e-21  Score=203.16  Aligned_cols=232  Identities=16%  Similarity=0.212  Sum_probs=195.2

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      .|.. |.++..-..++.+++|+.|..+.+|.....   ....    .+.+|..+|.++.|+++...|++|+.+|+|++||
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~----S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAIT----SLTGHESPIESLTFDTSERLLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCC---chhh----eeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence            4555 667777777889999999999999998631   1111    2457999999999999999999999999999997


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP  546 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~  546 (701)
                      +                     ..+..+.+ + .+|...+.++.|+  +.+.++|+ |+.+.+||++...+.+.+.+|..
T Consensus        99 l---------------------eeAk~vrt-L-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~  155 (825)
T KOG0267|consen   99 L---------------------EEAKIVRT-L-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR  155 (825)
T ss_pred             h---------------------hhhhhhhh-h-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence            6                     44443332 3 4788999999999  99999999 99999999998889999999999


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342          547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF  625 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~  625 (701)
                      .+..+.|+|+| +++.|++|..++|||...|+....|.+|.+.+.++.|+|..-++++||.|+++++||+++-+     .
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe-----~  230 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE-----V  230 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE-----E
Confidence            99999999999 99999999999999999999999999999999999999998899999999999999999843     2


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEE
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID  661 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~  661 (701)
                      +...... .   ..|.+..|+|++..+++|..-++.
T Consensus       231 I~s~~~~-~---~~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  231 ISSGKPE-T---DGVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             eeccCCc-c---CCceeeeecCCceeeecCchhhhh
Confidence            2212212 2   789999999999999998544444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.1e-18  Score=182.00  Aligned_cols=273  Identities=12%  Similarity=0.097  Sum_probs=203.8

Q ss_pred             CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc--eEE
Q 005342          327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ--SRE  397 (701)
Q Consensus       327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~--V~~  397 (701)
                      ...|.  +++||.+       ..||.|.+|++..+-+....         +                   .++.+  |.+
T Consensus        25 Ps~I~--slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v---------i-------------------~g~~drsIE~   74 (691)
T KOG2048|consen   25 PSEIV--SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV---------I-------------------HGPEDRSIES   74 (691)
T ss_pred             ccceE--EEEEeccCCceeeeccCCcEEEEccCCCceeeEE---------E-------------------ecCCCCceee
Confidence            34566  8888877       57899999999887665542         3                   34444  999


Q ss_pred             EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342          398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  477 (701)
Q Consensus       398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  477 (701)
                      ++|+ +|..|.+.+.+|.|.-||+.    +.+...   ......+.|++++.+|.+..++.|+.||.+...+.       
T Consensus        75 L~W~-e~~RLFS~g~sg~i~EwDl~----~lk~~~---~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~-------  139 (691)
T KOG2048|consen   75 LAWA-EGGRLFSSGLSGSITEWDLH----TLKQKY---NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSI-------  139 (691)
T ss_pred             EEEc-cCCeEEeecCCceEEEEecc----cCceeE---EecCCCcceeEEEeCCccceEEeecCCceEEEEec-------
Confidence            9999 55667788888999999998    443222   12235789999999999999999999996655533       


Q ss_pred             cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec----C----CCC
Q 005342          478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA----N----PPP  546 (701)
Q Consensus       478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~----~----~~~  546 (701)
                                    ..+.+.........+++|.+++|+  +..+++|+ ||.|++||..++..++...    +    ...
T Consensus       140 --------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~  205 (691)
T KOG2048|consen  140 --------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPT  205 (691)
T ss_pred             --------------CCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCce
Confidence                          333322211112346899999999  77799999 9999999999988766221    1    223


Q ss_pred             CeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 005342          547 IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL  626 (701)
Q Consensus       547 ~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l  626 (701)
                      -|.++.+-.++.|++|...|+|.+||...+.+++.+..|.+.|.+++..+++.++++++.|++|.-+...++....  ..
T Consensus       206 iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~w--v~  283 (691)
T KOG2048|consen  206 IVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEW--VI  283 (691)
T ss_pred             EEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccce--ee
Confidence            4678888877799999999999999999999999999999999999999999999999999999999988764321  11


Q ss_pred             eeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          627 HSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       627 ~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      .....+|.   ..|.+++..++  .+++| .|.++.+=..
T Consensus       284 ~~~r~~h~---hdvrs~av~~~--~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  284 NSRRDLHA---HDVRSMAVIEN--ALISGGRDFTLAICSS  318 (691)
T ss_pred             eccccCCc---ccceeeeeecc--eEEecceeeEEEEccc
Confidence            11233554   77888888776  55553 6776665443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=9.8e-20  Score=187.22  Aligned_cols=155  Identities=21%  Similarity=0.217  Sum_probs=128.5

Q ss_pred             CCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc-------EEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeC
Q 005342          507 DSISCFALR---GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCP  573 (701)
Q Consensus       507 ~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~-------~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~  573 (701)
                      ..|+++.|+   .+.|++++ ||.|++|.+..+.       ....+..|...|+++.|+|-.  .+++++.|.+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            457888888   67888888 8999999986542       445677899999999999987  9999999999999999


Q ss_pred             CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342          574 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  653 (701)
Q Consensus       574 ~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~  653 (701)
                      .+++....+.||++.|..++|||||+.+|+.+.||+|+||+.++++    .++.   .+..+-...--.|.|.-||++++
T Consensus       708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e----~pv~---Eg~gpvgtRgARi~wacdgr~vi  780 (1012)
T KOG1445|consen  708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE----QPVY---EGKGPVGTRGARILWACDGRIVI  780 (1012)
T ss_pred             hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC----Cccc---cCCCCccCcceeEEEEecCcEEE
Confidence            9999999999999999999999999999999999999999999874    3333   23322224446788999999988


Q ss_pred             E-Ee----cCeEEEEECCCC
Q 005342          654 S-IH----EGQIDVYEAPTL  668 (701)
Q Consensus       654 s-g~----Dg~I~iwd~~~g  668 (701)
                      + |-    ...|.+||.++.
T Consensus       781 v~Gfdk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  781 VVGFDKSSERQVQMYDAQTL  800 (1012)
T ss_pred             Eecccccchhhhhhhhhhhc
Confidence            7 53    456899998764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=3.2e-19  Score=184.38  Aligned_cols=264  Identities=14%  Similarity=0.107  Sum_probs=183.1

Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKL  467 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~v  467 (701)
                      ..|.+ |..+.|-|....|++++.|.+++.||+.    .+.+.-.. ..-+|...|.+++|.|+.. .|++|+.||.+.|
T Consensus        97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk----~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill  171 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK----TSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL  171 (720)
T ss_pred             ccccceeEeeccCCCceeEEEccCCceeeeeeec----cceeecce-eecccccccchhhhccCCCcceeeccCCCcEEE
Confidence            47888 9999999977789999999999999998    55554432 2347999999999999765 6788899999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCC-----eEEeeccc--CCCCC----CeEEEEec-CCEEEEEe--CCeEEEEeCC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSK-----LVMTNDIA--ADPKD----SISCFALR-GSHLFSAS--GGKISIFSLE  533 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~-----~~~~~~~~--~~~~~----~v~~l~~s-~~~l~s~s--dg~I~iwd~~  533 (701)
                      ||+.-+.. ++  ...+..++++..++     +...+.++  ..+..    .|+.+.|- ...||+++  |+.|+|||++
T Consensus       172 WD~R~n~~-d~--~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR  248 (720)
T KOG0321|consen  172 WDCRCNGV-DA--LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR  248 (720)
T ss_pred             EEEeccch-hh--HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence            99866542 00  00000011111111     00000000  12222    35556666 78888887  8999999998


Q ss_pred             CCcEEE--------EecCC---CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--ceEEeecCCCC--CeEEEEEecC
Q 005342          534 TFQTLA--------TFANP---PPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQN--RITCLAYSLS  597 (701)
Q Consensus       534 ~~~~~~--------~~~~~---~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~--~~~~~l~~h~~--~V~~v~~spd  597 (701)
                      +.....        .+..+   ...+.++..+..| ++.+.+.|+.|+.||+.+.  .++..+.|+..  .-..-..+||
T Consensus       249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd  328 (720)
T KOG0321|consen  249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD  328 (720)
T ss_pred             ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence            764332        22222   3357888888888 7777777999999999864  34455555432  1223356899


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC--CCEEEEEecCeEEEEECCCCc
Q 005342          598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLN  669 (701)
Q Consensus       598 g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd--g~~l~sg~Dg~I~iwd~~~g~  669 (701)
                      +.++++|+.|...++|.+.+-+    .... +..||.   ..|++++|.|.  +..+.+++|.+++||++..+-
T Consensus       329 ~~~l~SgSsd~~ayiw~vs~~e----~~~~-~l~Ght---~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVSSPE----APPA-LLLGHT---REVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             CceEeccCCCcceeeeeecCcc----CChh-hhhCcc---eEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence            9999999999999999999842    3333 555887   89999999874  666666799999999997653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=5.2e-19  Score=168.38  Aligned_cols=255  Identities=10%  Similarity=0.013  Sum_probs=185.1

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      -.++.|++.|.+||.|..||.|.|||+.+    ...-+   .+.+|..+|.+++||+||+.|+++|.|..+.+||+    
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T----~~iar---~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl----   94 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDT----FRIAR---MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL----   94 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccc----cchhh---hhhccccceeEEEecCCCCEeeeecCCceeEEEec----
Confidence            66899999999999999999999999983    32222   34579999999999999999999999999999966    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCE-EEEEeCCeEEEEeCCCCcEEEEecCC------
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSH-LFSASGGKISIFSLETFQTLATFANP------  544 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~-l~s~sdg~I~iwd~~~~~~~~~~~~~------  544 (701)
                                       ..|.++.. +  ...++|+...|.   .+. +++--+..-.+.++..++  +++-..      
T Consensus        95 -----------------~~gs~l~r-i--rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dl  152 (405)
T KOG1273|consen   95 -----------------LKGSPLKR-I--RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDL  152 (405)
T ss_pred             -----------------cCCCceeE-E--EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCcccc
Confidence                             44443332 2  256788888888   223 333335545555554422  222111      


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-CCeEEEEEecCCCEEEEEeCCCeEEEEECCC----C
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVG----W  618 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~----g  618 (701)
                      .....+..|++.| +|++|...|.+.++|..+.+++..++-.. ..|..+.++..|++|+..+.|..||.|+++.    |
T Consensus       153 n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~  232 (405)
T KOG1273|consen  153 NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG  232 (405)
T ss_pred             ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC
Confidence            1122444688999 99999999999999999999998887655 6889999999999999999999999999873    1


Q ss_pred             eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCceeeeeee-----eeEEEEEe
Q 005342          619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQ  684 (701)
Q Consensus       619 ~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~  684 (701)
                      +-....+.+++..-  .+...-.+++||.||.++++|  .-..++||.-..|.+++.+.|     ...+.|.|
T Consensus       233 r~~e~e~~~K~qDv--VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp  303 (405)
T KOG1273|consen  233 RDGEVEPEHKLQDV--VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP  303 (405)
T ss_pred             ccCCcChhHHHHHH--HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc
Confidence            10011111111100  001334678999999999986  466799999999999999998     44555543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=7.1e-20  Score=201.59  Aligned_cols=244  Identities=16%  Similarity=0.218  Sum_probs=189.9

Q ss_pred             eEEEEEcCCCCe----EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEEe
Q 005342          395 SRESTSLPDADS----AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWK  469 (701)
Q Consensus       395 V~~l~~spdg~~----l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd  469 (701)
                      .+.++|.+.|..    ||.|..||.|.+||.......+....+ .....|.+.|..+.|++.+. .+++|+.||.|.|||
T Consensus        67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l-a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD  145 (1049)
T KOG0307|consen   67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL-ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD  145 (1049)
T ss_pred             ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH-hhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence            678999998876    888999999999999754222221111 13456999999999999766 899999999999998


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPP  545 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~  545 (701)
                      +...+.                  -...   -.......|.+++|+   .+.|++++ +|.+.|||++..+.+-.+..+.
T Consensus       146 lnn~~t------------------P~~~---~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~  204 (1049)
T KOG0307|consen  146 LNKPET------------------PFTP---GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP  204 (1049)
T ss_pred             cCCcCC------------------CCCC---CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC
Confidence            844221                  0000   011345789999999   77889998 8999999999888777776553


Q ss_pred             C--CeEEEEEcCCC--eEEEEeCCC---cEEEEeCCC-CceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECC
Q 005342          546 P--IATYFILLPQD--LFAFGFDDS---SILVHCPCT-KKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       546 ~--~i~~l~~spdg--~l~~gs~dg---~I~iwd~~~-~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~  616 (701)
                      .  .+..++|+|++  .++++++|.   .|.+||++. ...++++++|...|.++.|++ |..+|+|++.|++|.+|+.+
T Consensus       205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~  284 (1049)
T KOG0307|consen  205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN  284 (1049)
T ss_pred             CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence            3  46899999999  777777765   799999886 457788899999999999999 45899999999999999999


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCE-EEE-EecCeEEEEECCCCc
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLS-IHEGQIDVYEAPTLN  669 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~-l~s-g~Dg~I~iwd~~~g~  669 (701)
                      +|+.     +.++....    .++..+.|+|...- +++ +-||.|.|+.+.++.
T Consensus       285 tgEv-----l~~~p~~~----nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  285 TGEV-----LGELPAQG----NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CceE-----eeecCCCC----cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9863     33344433    88999999998774 444 489999999997654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=5.6e-19  Score=176.15  Aligned_cols=277  Identities=14%  Similarity=0.107  Sum_probs=194.3

Q ss_pred             ccCCCc-eEEEEEcCCC--CeEEEEcCCCcEEEEeccc-cCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCC
Q 005342          389 FNDNNQ-SRESTSLPDA--DSAVCAKSLEKSVNLKLQL-INEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTA  463 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg--~~l~s~s~d~~v~iw~~~~-~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg  463 (701)
                      .+-|.. |.+++|+|..  +.+|+|+.-|.|-+||+.. .+.......    +..|..+|.++.|+|.. ..+++.|.||
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~----f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL----FTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE----eccCCccccceEecCCChhheeeeccCc
Confidence            345666 9999999975  4788899999999999941 111111222    23588999999999954 5789999999


Q ss_pred             cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE-EE
Q 005342          464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT-LA  539 (701)
Q Consensus       464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~-~~  539 (701)
                      +|+.-|++....                  ..+..  . ......+.++.++  ...++.+. =|...+||++++.. ..
T Consensus       258 tiR~~D~~~~i~------------------e~v~s--~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~  316 (498)
T KOG4328|consen  258 TIRLQDFEGNIS------------------EEVLS--L-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE  316 (498)
T ss_pred             eeeeeeecchhh------------------HHHhh--c-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccch
Confidence            999998744311                  01111  0 0123455667777  44556666 37999999998764 66


Q ss_pred             EecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-----eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342          540 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-----TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV  612 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v  612 (701)
                      .+.-|...|++++++|..  ++|+++.|++.+|||++.-.     .+..+ .|...|+++.|||++-.|+|.+.|+.|+|
T Consensus       317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D~~IRv  395 (498)
T KOG4328|consen  317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQDNEIRV  395 (498)
T ss_pred             hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCCCceEeeccCCceEE
Confidence            667788899999999998  99999999999999998632     13333 49999999999997777999999999999


Q ss_pred             EECC----CCeeeeeeeee-eccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee--eeEEEEEe
Q 005342          613 WDAV----GWKKLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL--ISHIMFVQ  684 (701)
Q Consensus       613 wd~~----~g~~~~~~~l~-~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~--i~~~~fs~  684 (701)
                      ||..    .-++.  ..+. +-..+..   -......|.|+..++++| .-..|-|+|-..|+.+..+-.  .+.+   |
T Consensus       396 ~dss~~sa~~~p~--~~I~Hn~~t~Rw---lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI---~  467 (498)
T KOG4328|consen  396 FDSSCISAKDEPL--GTIPHNNRTGRW---LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTI---P  467 (498)
T ss_pred             eecccccccCCcc--ceeeccCccccc---ccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccccc---c
Confidence            9984    21111  1111 0111111   234467899999999998 677799999988887777655  2222   4


Q ss_pred             eEEeeeecceEEEEe
Q 005342          685 IVVKFHSFKFFYVAV  699 (701)
Q Consensus       685 ~~~~f~~~~~~~~~~  699 (701)
                      +...||..+...+|-
T Consensus       468 ~vn~~HP~~~~~~aG  482 (498)
T KOG4328|consen  468 SVNEFHPMRDTLAAG  482 (498)
T ss_pred             cceeecccccceecc
Confidence            555667766544443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=7.5e-19  Score=171.19  Aligned_cols=251  Identities=17%  Similarity=0.153  Sum_probs=175.3

Q ss_pred             cCCCc-eEEEEEcCCC--CeEEEEcCCCcEEEEeccccC----CCCc-e----eEeecCCCCCCCCEEEEEEecCCC-EE
Q 005342          390 NDNNQ-SRESTSLPDA--DSAVCAKSLEKSVNLKLQLIN----EPSE-C----RTLLLPDNSFGGRVVRLIYSHSGD-FL  456 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg--~~l~s~s~d~~v~iw~~~~~~----~~~~-~----~~l~~~~~~~~~~v~~l~~spdg~-~l  456 (701)
                      -+|.+ ++.+.-++-|  .+.|+-+..|.|+||++....    ..+. .    ..-.+++.+|...-+++.|||-.. .+
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            35666 7777776654  466666788999999986321    0000 0    000123457888889999999322 37


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeC
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSL  532 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~  532 (701)
                      ++|..-+.|++|...++.              |....     ..+ .+|...|-.++||   ...+++|+ ||+|+|||+
T Consensus       228 lsGDc~~~I~lw~~~~g~--------------W~vd~-----~Pf-~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi  287 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGS--------------WKVDQ-----RPF-TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI  287 (440)
T ss_pred             ccCccccceEeeeeccCc--------------eeecC-----ccc-cccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence            888888899999653332              11111     112 3699999999999   77899999 999999999


Q ss_pred             CCCc---EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC---CceEEeecCCCCCeEEEEEec-CCCEEEEE
Q 005342          533 ETFQ---TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---KKTKAKLKGHQNRITCLAYSL-SLNVLVSS  604 (701)
Q Consensus       533 ~~~~---~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~---~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~  604 (701)
                      +.+.   ++.+ +.|.+.|+.|.|+.+. +||+|+.||+++|||++.   ++++..|+.|+.+|+++.|+| +...|+++
T Consensus       288 Rs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas  366 (440)
T KOG0302|consen  288 RSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS  366 (440)
T ss_pred             cCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec
Confidence            9883   3433 6799999999999999 999999999999999986   567889999999999999999 45688889


Q ss_pred             eCCCeEEEEECCCCee------eeeeeeee----ccCCCCCCCCCeEEEEEcCCCC-EEEE-EecCeEEEE
Q 005342          605 GADAQLCVWDAVGWKK------LCSKFLHS----FQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVY  663 (701)
Q Consensus       605 s~D~~I~vwd~~~g~~------~~~~~l~~----~~~~~~~~~~~v~~v~~spdg~-~l~s-g~Dg~I~iw  663 (701)
                      |.|.+|.+||+....-      .....+..    +..-|. .+..+-.+.|++.-. ++++ +.|| +.||
T Consensus       367 g~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  367 GEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             cCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            9999999999875321      00011110    111121 125678899998743 3343 4566 3444

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=9.6e-19  Score=175.58  Aligned_cols=277  Identities=12%  Similarity=0.119  Sum_probs=200.6

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCC--ccccccccccCCCCCCCCCCcc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTV--SNLRYASSILTDKPNQEGRPLD  376 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~--~~~~~~~~~~~~~~~~~~~~~~  376 (701)
                      .++++||...-...-.+..|+.......+.|+..        +.|..+++|.-...  +....        ....|.   
T Consensus        12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~--------~k~~gd---   80 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV--------RKLTGD---   80 (673)
T ss_pred             CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcccee--------eccccc---
Confidence            6788999876655555555554433337888776        78899998853221  11111        001111   


Q ss_pred             cccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342          377 ASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL  456 (701)
Q Consensus       377 ~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l  456 (701)
                              ...|      |.+..++   .|+++|+..+.|+|||+.    ...|++   ...+|...|+++.++-...||
T Consensus        81 --------~~~C------v~~~s~S---~y~~sgG~~~~Vkiwdl~----~kl~hr---~lkdh~stvt~v~YN~~Deyi  136 (673)
T KOG4378|consen   81 --------NAFC------VACASQS---LYEISGGQSGCVKIWDLR----AKLIHR---FLKDHQSTVTYVDYNNTDEYI  136 (673)
T ss_pred             --------hHHH------Hhhhhcc---eeeeccCcCceeeehhhH----HHHHhh---hccCCcceeEEEEecCCccee
Confidence                    0111      4444444   899999999999999997    455555   445789999999999999999


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeC
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSL  532 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~  532 (701)
                      ++++..|.|.|..+.++                     .-.+ .+..+....|.-+.++   ...|.+++ +|.|.+||.
T Consensus       137 Asvs~gGdiiih~~~t~---------------------~~tt-~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv  194 (673)
T KOG4378|consen  137 ASVSDGGDIIIHGTKTK---------------------QKTT-TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV  194 (673)
T ss_pred             EEeccCCcEEEEecccC---------------------cccc-ceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence            99999999999966443                     2111 1222334456677888   44566677 799999999


Q ss_pred             CCCcEEEEe-cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 005342          533 ETFQTLATF-ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ  609 (701)
Q Consensus       533 ~~~~~~~~~-~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~  609 (701)
                      ....++..+ ..|..+...|+|+|..  ++++.+.|..|.+||.+.......+. ...+...++|+++|.+|+.|+..|.
T Consensus       195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~  273 (673)
T KOG4378|consen  195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGE  273 (673)
T ss_pred             cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCce
Confidence            776665544 5688899999999998  89999999999999999887777665 4567999999999999999999999


Q ss_pred             EEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342          610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ  649 (701)
Q Consensus       610 I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg  649 (701)
                      |+.||++.-+    .++. +...|.   ..|++++|-|..
T Consensus       274 ~i~YD~R~~k----~Pv~-v~sah~---~sVt~vafq~s~  305 (673)
T KOG4378|consen  274 LIAYDMRSTK----APVA-VRSAHD---ASVTRVAFQPSP  305 (673)
T ss_pred             EEEEecccCC----CCce-Eeeecc---cceeEEEeeecc
Confidence            9999999842    4444 222454   789999998764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=2.9e-18  Score=177.47  Aligned_cols=243  Identities=10%  Similarity=0.098  Sum_probs=194.1

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      .++.++|...|.++.++++|.+.|.  |++|+.|       +.|..|.+|+.+-.-.+++                    
T Consensus        33 ~rlliyD~ndG~llqtLKgHKDtVy--cVAys~dGkrFASG~aDK~VI~W~~klEG~LkY--------------------   90 (1081)
T KOG1538|consen   33 SRLLVYDTSDGTLLQPLKGHKDTVY--CVAYAKDGKRFASGSADKSVIIWTSKLEGILKY--------------------   90 (1081)
T ss_pred             CEEEEEeCCCcccccccccccceEE--EEEEccCCceeccCCCceeEEEecccccceeee--------------------
Confidence            7788999999999999999999999  9999999       8999999998765554554                    


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s  458 (701)
                                 .|++ |.|+.|+|-...|++|+- ...-+|...+    ....+.     ....+|.+++|..||.+++.
T Consensus        91 -----------SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~q----K~V~K~-----kss~R~~~CsWtnDGqylal  149 (1081)
T KOG1538|consen   91 -----------SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQ----KSVSKH-----KSSSRIICCSWTNDGQYLAL  149 (1081)
T ss_pred             -----------ccCCeeeEeecCchHHHhhhcch-hhccccChhh----hhHHhh-----hhheeEEEeeecCCCcEEEE
Confidence                       6888 999999999999999987 4567888762    211111     13578999999999999999


Q ss_pred             EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-------CCEEEEEe-CCeEEEE
Q 005342          459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSAS-GGKISIF  530 (701)
Q Consensus       459 ~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-------~~~l~s~s-dg~I~iw  530 (701)
                      |-.||+|.+-+-...                  +.+ .+.  -+.+...+|.+++|+       ...+++.. +.++.+|
T Consensus       150 G~~nGTIsiRNk~gE------------------ek~-~I~--Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy  208 (1081)
T KOG1538|consen  150 GMFNGTISIRNKNGE------------------EKV-KIE--RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY  208 (1081)
T ss_pred             eccCceEEeecCCCC------------------cce-EEe--CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence            999999998753211                  111 111  225678899999998       34677777 7888888


Q ss_pred             eCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 005342          531 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ  609 (701)
Q Consensus       531 d~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~  609 (701)
                      .+ +|+.+..-..-.-...|+.+-++| +++.|+.|+.+++|- +.|-.+.++-....+|+.++..|++++++.|+.||+
T Consensus       209 ~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT  286 (1081)
T KOG1538|consen  209 QL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT  286 (1081)
T ss_pred             Ee-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCe
Confidence            88 566665444344456799999999 999999999999997 667777777667789999999999999999999999


Q ss_pred             EEEEEC
Q 005342          610 LCVWDA  615 (701)
Q Consensus       610 I~vwd~  615 (701)
                      |-.|++
T Consensus       287 iACyNl  292 (1081)
T KOG1538|consen  287 IACYNL  292 (1081)
T ss_pred             eehhhh
Confidence            999986

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=4.1e-18  Score=174.91  Aligned_cols=256  Identities=13%  Similarity=0.143  Sum_probs=197.2

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCE-EEEEECCCcEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF-LVALTQTATHK  466 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~-l~s~s~dg~i~  466 (701)
                      ++||.+ |.+++..|.|.+|++|+.||+|+||.+.    +++|.....    ..+.|.|++|+|.+.. +++.+..+.+.
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~----TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~~~~~~  467 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIA----TGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAVGECVL  467 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEee----cceEEEEEe----ecceeEEEEecCCCCceeEEEEecCceE
Confidence            789999 9999999999999999999999999999    888866331    2568999999998863 34444444566


Q ss_pred             EEecCCCCc----ccccccc--------ceeeEEeeCCCC---e---EEeecccCCCCCCeEEEEec--CCEEEEEe-C-
Q 005342          467 LWKWQSNKQ----SLEEENV--------NMESQLYQPSSK---L---VMTNDIAADPKDSISCFALR--GSHLFSAS-G-  524 (701)
Q Consensus       467 vwd~~~~~~----~~g~~~~--------~~~i~~~d~~~~---~---~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d-  524 (701)
                      +-+..-+..    ......+        ...+..|...+.   +   ++.  +  .|...|..+.|+  |.||++.. + 
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~--I--~~~k~i~~vtWHrkGDYlatV~~~~  543 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV--I--KHPKSIRQVTWHRKGDYLATVMPDS  543 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEE--E--ecCCccceeeeecCCceEEEeccCC
Confidence            666544422    0000001        112456664421   1   221  2  478899999999  99999876 3 


Q ss_pred             --CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEE
Q 005342          525 --GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL  601 (701)
Q Consensus       525 --g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l  601 (701)
                        ..|.|.++...+....|....+.+.++.|+|.. ++++++. ..|+|||+..+.+++++......|..++.+|.|.-|
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl  622 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL  622 (733)
T ss_pred             CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence              679999998777666776667889999999999 7777665 579999999998888887777789999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       602 ~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      +.|+.|+.++.+|+.-+.    ++.+++. .|.   ..+++|+|++.-.++++| .||++.|+.-
T Consensus       623 i~gs~d~k~~WfDldlss----kPyk~lr-~H~---~avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSS----KPYKTLR-LHE---KAVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             EEecCCCeeEEEEcccCc----chhHHhh-hhh---hhhhhhhhccccceeeeecCCCcEEEEee
Confidence            999999999999998853    4555333 555   899999999999999997 7899988853

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=5.8e-19  Score=186.32  Aligned_cols=240  Identities=15%  Similarity=0.139  Sum_probs=175.7

Q ss_pred             eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcEEEEecCC
Q 005342          395 SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQS  472 (701)
Q Consensus       395 V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~  472 (701)
                      ...+.|+. +.++||+++..|.|.+||+...   .+-..+. .+..|...+.++.|++.. .+|++||.||.|+.||++.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~---~rnk~l~-~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~  165 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS---IRNKLLT-VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS  165 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCcc---ccchhhh-HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence            33466753 5679999999999999999731   1111111 345699999999999854 5788999999999998854


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCC-cEEEEecCCCCC
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-QTLATFANPPPI  547 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~~~  547 (701)
                      ..                   .. .+  + .+....|.++.|+   +..++++. .|.+.+||++.. ++...+..|.++
T Consensus       166 ~~-------------------S~-~t--~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp  222 (839)
T KOG0269|consen  166 KK-------------------SK-ST--F-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP  222 (839)
T ss_pred             cc-------------------cc-cc--c-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc
Confidence            31                   11 11  2 2356689999999   78899998 699999999864 467788899999


Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecCCC-EEEEEeC--CCeEEEEECCCCeeee
Q 005342          548 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLN-VLVSSGA--DAQLCVWDAVGWKKLC  622 (701)
Q Consensus       548 i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~-~l~s~s~--D~~I~vwd~~~g~~~~  622 (701)
                      |.|+.|+|++ +||+|+.|+.|+|||+.+.+.-....- ...+|.+|.|-|+.+ .||+++.  |..|+|||++..    
T Consensus       223 V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP----  298 (839)
T KOG0269|consen  223 VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP----  298 (839)
T ss_pred             eEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc----
Confidence            9999999999 999999999999999986544322222 345899999999765 6777664  889999999973    


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEcC-CCCEEEE-EecCeEEEEECCCCc
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLN  669 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~sp-dg~~l~s-g~Dg~I~iwd~~~g~  669 (701)
                      -.+..++. .|.   ..++.++|-. |...+.+ +.||+|..-.++++.
T Consensus       299 YIP~~t~~-eH~---~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  299 YIPYATFL-EHT---DSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             cccceeee-ccC---ccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            12333233 454   8889999965 3344555 378877655554443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.79  E-value=5.1e-18  Score=175.60  Aligned_cols=257  Identities=14%  Similarity=0.126  Sum_probs=178.2

Q ss_pred             EEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       321 ~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      .....|.+.|.  .+.|-|.       +.|.++++||+.++.+...                           ..+.||.
T Consensus        94 k~~~aH~nAif--Dl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~---------------------------~~~~GH~  144 (720)
T KOG0321|consen   94 KKPLAHKNAIF--DLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG---------------------------RLNLGHT  144 (720)
T ss_pred             cccccccceeE--eeccCCCceeEEEccCCceeeeeeeccceeecc---------------------------eeecccc
Confidence            45567999999  9999998       8999999999998876654                           1235888


Q ss_pred             c-eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCCC---ce--------------eEee---cCCCCCCCCEEE---EE
Q 005342          394 Q-SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPS---EC--------------RTLL---LPDNSFGGRVVR---LI  448 (701)
Q Consensus       394 ~-V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~~---~~--------------~~l~---~~~~~~~~~v~~---l~  448 (701)
                      . |.+++|+|+. ..|++|+.||.|.|||+.......   .+              ..+.   -.-..+...|.+   +.
T Consensus       145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv  224 (720)
T KOG0321|consen  145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV  224 (720)
T ss_pred             cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence            8 9999999965 578899999999999986321000   00              0000   000134455665   66


Q ss_pred             EecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C
Q 005342          449 YSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G  524 (701)
Q Consensus       449 ~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d  524 (701)
                      +..|...|++++. |+.|+|||+.......-..-.         ....+.+   .......+.++..+  |.++.+.+ |
T Consensus       225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~---------~~~~~~t---~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR---------GSDKYPT---HSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             EEeccceeeeccCCCcceEEEeecccccccccCCC---------cccCccC---cccceeeeEEEEecCCCCeEEEEecC
Confidence            7788889999988 999999999776431100000         0000000   00112356677776  77766655 9


Q ss_pred             CeEEEEeCCCCc--EEEEecCCCCC--eEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-eEEeecCCCCCeEEEEEecC-
Q 005342          525 GKISIFSLETFQ--TLATFANPPPI--ATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLS-  597 (701)
Q Consensus       525 g~I~iwd~~~~~--~~~~~~~~~~~--i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~v~~spd-  597 (701)
                      +.|++||+.+..  .+..+.++...  -..-..+||+ ++++|+.|...++|.+.+.+ ....+.||...|++++|.|. 
T Consensus       293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~  372 (720)
T KOG0321|consen  293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA  372 (720)
T ss_pred             CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence            999999997643  34444443221  1233578999 99999999999999998754 35567799999999999983 


Q ss_pred             CCEEEEEeCCCeEEEEECCCC
Q 005342          598 LNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       598 g~~l~s~s~D~~I~vwd~~~g  618 (701)
                      -.-++++++|.+++||++..+
T Consensus       373 ~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  373 TTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CCCceeeccCcceEEEeccCc
Confidence            335777899999999999765

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=4.3e-18  Score=169.45  Aligned_cols=237  Identities=15%  Similarity=0.154  Sum_probs=176.4

Q ss_pred             CCeEEEEcCCCcEEEEeccccCCCCceeEe--------------ecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEE
Q 005342          404 ADSAVCAKSLEKSVNLKLQLINEPSECRTL--------------LLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLW  468 (701)
Q Consensus       404 g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l--------------~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vw  468 (701)
                      |+++|.|+.|..|.|||+.-...-..+..+              .....+|+..|.+++|...-+ .|++||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            689999999999999998632211111111              011236888888999987644 67888999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEE-EEecC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTL-ATFAN  543 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~-~~~~~  543 (701)
                      |+                     .+|++... + ..|...|.++.|.   +.++++|+ |+++.+.|.+..... ..+. 
T Consensus       272 D~---------------------~~g~p~~s-~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-  327 (463)
T KOG0270|consen  272 DV---------------------DTGKPKSS-I-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-  327 (463)
T ss_pred             Ec---------------------CCCCccee-h-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-
Confidence            66                     55554432 2 4688999999999   88999999 999999999842211 1222 


Q ss_pred             CCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCe
Q 005342          544 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       544 ~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      ..+.|-.++|.|..  .+++++.||+++-+|+|.. +++.+++.|.++|.++++++. ..+++|+|.|+.|++|++....
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            34678999999998  8889999999999999974 899999999999999999985 4588999999999999998743


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCcee
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHT  671 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~~~  671 (701)
                      ...   ..    .|.-.-+...|.++.|+-.++++ | ..+.++|||+.+...+
T Consensus       408 ~~~---v~----~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  408 PKS---VK----EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             Ccc---cc----cccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            211   11    11100134567788888665554 5 6778999999877654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.79  E-value=2.2e-18  Score=167.89  Aligned_cols=213  Identities=16%  Similarity=0.255  Sum_probs=154.4

Q ss_pred             CCCCCEEEEEEecCCC--EEEEEECCCcEEEEecCCCCcc-ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec
Q 005342          439 SFGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQS-LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR  515 (701)
Q Consensus       439 ~~~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~~~~~~~-~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s  515 (701)
                      .|.+.+..+.-++-|+  +.++-+..|.|.||++...... ....     ..+-+.....+.+  + .+|...=+.++||
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~-----~~~~~s~~~Pl~t--~-~ghk~EGy~LdWS  220 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPG-----LEVKDSEFRPLFT--F-NGHKGEGYGLDWS  220 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcc-----ccccccccCceEE--e-cccCccceeeecc
Confidence            4666677776666554  4445556799999998443220 0000     0000111111332  2 4788888899999


Q ss_pred             ---CCEEEEEe-CCeEEEEeCCCCcE---EEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC---ceEEeec
Q 005342          516 ---GSHLFSAS-GGKISIFSLETFQT---LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK---KTKAKLK  583 (701)
Q Consensus       516 ---~~~l~s~s-dg~I~iwd~~~~~~---~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~---~~~~~l~  583 (701)
                         -..+++|. -+.|++|...+|.-   ...+.+|...|-.++|||..  .+++||.||+|+|||++.+   ..+.+ +
T Consensus       221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k  299 (440)
T KOG0302|consen  221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K  299 (440)
T ss_pred             cccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e
Confidence               45677877 78999999988752   34567899999999999988  9999999999999999988   34444 6


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEE-EecCeEE
Q 005342          584 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQID  661 (701)
Q Consensus       584 ~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~s-g~Dg~I~  661 (701)
                      .|.+.|+.+.|+.+-.+||+|++||+++|||++.-+  ...++..+. .|.   .+|++|.|+|.. ..|++ |.|.+|.
T Consensus       300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~--~~~pVA~fk-~Hk---~pItsieW~p~e~s~iaasg~D~Qit  373 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK--SGQPVATFK-YHK---APITSIEWHPHEDSVIAASGEDNQIT  373 (440)
T ss_pred             ccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc--CCCcceeEE-ecc---CCeeEEEeccccCceEEeccCCCcEE
Confidence            799999999999988899999999999999999743  223444333 444   899999999963 44444 6999999


Q ss_pred             EEECC
Q 005342          662 VYEAP  666 (701)
Q Consensus       662 iwd~~  666 (701)
                      |||+.
T Consensus       374 iWDls  378 (440)
T KOG0302|consen  374 IWDLS  378 (440)
T ss_pred             EEEee
Confidence            99984

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.79  E-value=2.5e-17  Score=155.24  Aligned_cols=256  Identities=14%  Similarity=0.173  Sum_probs=182.5

Q ss_pred             ccCCCc-eEEEEEcCCC-CeEEEEcCC-------CcEEEEeccccCCCCceeEe---ecCCCCCCCCEEEEEEecCCCEE
Q 005342          389 FNDNNQ-SRESTSLPDA-DSAVCAKSL-------EKSVNLKLQLINEPSECRTL---LLPDNSFGGRVVRLIYSHSGDFL  456 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg-~~l~s~s~d-------~~v~iw~~~~~~~~~~~~~l---~~~~~~~~~~v~~l~~spdg~~l  456 (701)
                      |..|.+ ||.++-+|.. +.|+++..+       ..+.||.+.+...+.....+   ..-...+-+.|.|+.|.|++..+
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl  138 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL  138 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence            556777 9999999954 556665442       24679998754333211111   10111345689999999999988


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEeCCeEEEEeC
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSASGGKISIFSL  532 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~sdg~I~iwd~  532 (701)
                      ++-. |..|.+|+++.....                ...+... ...++....++-+|+    |+.+++.+|+++..||+
T Consensus       139 asm~-dn~i~l~~l~ess~~----------------vaev~ss-~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~  200 (370)
T KOG1007|consen  139 ASMD-DNNIVLWSLDESSKI----------------VAEVLSS-ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDL  200 (370)
T ss_pred             EEec-cCceEEEEcccCcch----------------heeeccc-ccccccceecccccCCCCccceEEEeCCCcEEEEEc
Confidence            7755 889999988543210                0001100 111344566777787    78899999999999999


Q ss_pred             CCCcEEEEec-CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEEec-CCCEEEEEeCC
Q 005342          533 ETFQTLATFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD  607 (701)
Q Consensus       533 ~~~~~~~~~~-~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D  607 (701)
                      ++.+....+. .|...+..+.|+|+-  +|+++++||.|++||.+. ..+++++.+|...|++|.|+| ..+++.|||.|
T Consensus       201 RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD  280 (370)
T KOG1007|consen  201 RTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD  280 (370)
T ss_pred             cchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence            9988776664 678889999999998  999999999999999885 567899999999999999999 45688999999


Q ss_pred             CeEEEEECCCCe--e-----------------eeeeee-----eeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEE
Q 005342          608 AQLCVWDAVGWK--K-----------------LCSKFL-----HSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQID  661 (701)
Q Consensus       608 ~~I~vwd~~~g~--~-----------------~~~~~l-----~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~  661 (701)
                      ..|.+|...+-.  .                 ...+++     .++. .   |+..|++++||.-..++.++  .||.+.
T Consensus       281 s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd-e---hEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  281 SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD-E---HEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             ceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc-c---cccceEEEeeccCCCeeEEEeccCceEE
Confidence            999999865411  0                 001111     1111 2   33899999999988888774  799998


Q ss_pred             EEECC
Q 005342          662 VYEAP  666 (701)
Q Consensus       662 iwd~~  666 (701)
                      |=.+.
T Consensus       357 Is~V~  361 (370)
T KOG1007|consen  357 ISSVP  361 (370)
T ss_pred             eecCC
Confidence            87664

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.79  E-value=8.4e-18  Score=174.04  Aligned_cols=262  Identities=15%  Similarity=0.134  Sum_probs=200.6

Q ss_pred             ceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEc
Q 005342          329 WWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSL  401 (701)
Q Consensus       329 ~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~s  401 (701)
                      .|.  .++|-||      ..+..+.+||+..|..+.+                             |++|.+ |.+++|+
T Consensus        14 ci~--d~afkPDGsqL~lAAg~rlliyD~ndG~llqt-----------------------------LKgHKDtVycVAys   62 (1081)
T KOG1538|consen   14 CIN--DIAFKPDGTQLILAAGSRLLVYDTSDGTLLQP-----------------------------LKGHKDTVYCVAYA   62 (1081)
T ss_pred             chh--eeEECCCCceEEEecCCEEEEEeCCCcccccc-----------------------------cccccceEEEEEEc
Confidence            677  9999999      7788999999999987776                             367888 9999999


Q ss_pred             CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342          402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN  481 (701)
Q Consensus       402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~  481 (701)
                      .||+.+|+|+.|+.|.+|+..    -.-..+.     .|.+.|.|+.|+|-...+++++-+ ..-+|             
T Consensus        63 ~dGkrFASG~aDK~VI~W~~k----lEG~LkY-----SH~D~IQCMsFNP~~h~LasCsLs-dFglW-------------  119 (1081)
T KOG1538|consen   63 KDGKRFASGSADKSVIIWTSK----LEGILKY-----SHNDAIQCMSFNPITHQLASCSLS-DFGLW-------------  119 (1081)
T ss_pred             cCCceeccCCCceeEEEeccc----ccceeee-----ccCCeeeEeecCchHHHhhhcchh-hcccc-------------
Confidence            999999999999999999975    2222221     389999999999999999888763 34556             


Q ss_pred             cceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec---CCCCCeEEEEEcC
Q 005342          482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA---NPPPIATYFILLP  555 (701)
Q Consensus       482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~---~~~~~i~~l~~sp  555 (701)
                              .++...+..    ......+.+.+|.  |++++.|- +|+|.+-+- +++....+.   |..++|.+++|+|
T Consensus       120 --------S~~qK~V~K----~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p  186 (1081)
T KOG1538|consen  120 --------SPEQKSVSK----HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNP  186 (1081)
T ss_pred             --------ChhhhhHHh----hhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecC
Confidence                    333333321    1234577888888  99999998 999999875 444433333   4678999999998


Q ss_pred             CC------eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342          556 QD------LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  629 (701)
Q Consensus       556 dg------~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~  629 (701)
                      ..      .+++.....++..|.+. |+.+..-+.-.-...|+.+-|+|.++..|+.|+.+.+|-.+.-      .+.++
T Consensus       187 ~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv------rLGTv  259 (1081)
T KOG1538|consen  187 SSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV------RLGTV  259 (1081)
T ss_pred             CCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe------EEeec
Confidence            64      78888888999998864 5555533333334568889999999999999999999976652      22222


Q ss_pred             cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342          630 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL  668 (701)
Q Consensus       630 ~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g  668 (701)
                      - ...   ..|+.++..|+++.++.| .||+|.-|++...
T Consensus       260 g-~~D---~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  260 G-EQD---SWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             c-ccc---eeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            1 222   899999999999999997 8999999987543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.79  E-value=1.7e-17  Score=165.67  Aligned_cols=291  Identities=16%  Similarity=0.168  Sum_probs=208.4

Q ss_pred             cccCccceeEEEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCC
Q 005342          312 PSMDKSRLLSLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDD  382 (701)
Q Consensus       312 wd~~~~~~~~~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~  382 (701)
                      .|+..-+.....+-+.+.|.  +++|+|.         ..-|+|-+||+.+...-..                       
T Consensus       171 l~l~~~~~~~v~kv~~~Rit--~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d-----------------------  225 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRIT--SLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD-----------------------  225 (498)
T ss_pred             cccccceecceeEecccceE--EEEecccCcceEEEEccCCCcEEEEecCCCCCccC-----------------------
Confidence            45555666777788899999  9999998         6789999999963222111                       


Q ss_pred             CCCCccccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342          383 SNDSSCFNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT  460 (701)
Q Consensus       383 ~~~~~~l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s  460 (701)
                        ....+..|.. |+++.|+|. ...+++.+.||+|+.-|++    .+....+ +...........+.|+.+...++.+.
T Consensus       226 --~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~----~~i~e~v-~s~~~d~~~fs~~d~~~e~~~vl~~~  298 (498)
T KOG4328|consen  226 --GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE----GNISEEV-LSLDTDNIWFSSLDFSAESRSVLFGD  298 (498)
T ss_pred             --ceEEeccCCccccceEecCCChhheeeeccCceeeeeeec----chhhHHH-hhcCccceeeeeccccCCCccEEEee
Confidence              1222557877 999999995 4688999999999999997    3322221 11112345567788888888888888


Q ss_pred             CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc
Q 005342          461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ  536 (701)
Q Consensus       461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~  536 (701)
                      .=|...+||.+++.                 .+....     .-|...|.+++++   ..++++++ |++.+|||++...
T Consensus       299 ~~G~f~~iD~R~~~-----------------s~~~~~-----~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~  356 (498)
T KOG4328|consen  299 NVGNFNVIDLRTDG-----------------SEYENL-----RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR  356 (498)
T ss_pred             cccceEEEEeecCC-----------------ccchhh-----hhhhcccceeecCCCCchheeecccCcceeeeehhhhc
Confidence            87899999875431                 111111     2477799999999   77899999 9999999987532


Q ss_pred             E-----EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC----CCceEEeecCCCC------CeEEEEEecCCCE
Q 005342          537 T-----LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC----TKKTKAKLKGHQN------RITCLAYSLSLNV  600 (701)
Q Consensus       537 ~-----~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~----~~~~~~~l~~h~~------~V~~v~~spdg~~  600 (701)
                      .     +.++ .|...|.+..|||++ .|++.+.|..|+|||..    ...+..++. |..      .....+|.|+..+
T Consensus       357 ~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~l  434 (498)
T KOG4328|consen  357 GKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNL  434 (498)
T ss_pred             CCCCcceecc-cccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccE
Confidence            1     3444 489999999999999 99999999999999973    233333333 321      2345689999999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEE-EEEcCCCCEEEEE--ecCeEEEEECC
Q 005342          601 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLSI--HEGQIDVYEAP  666 (701)
Q Consensus       601 l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~-v~~spdg~~l~sg--~Dg~I~iwd~~  666 (701)
                      +++|-.-..|-|+|-..++.++.  +      |.+....|.+ ..|+|-+..+++|  ..|.|+||--.
T Consensus       435 i~vg~~~r~IDv~~~~~~q~v~e--l------~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  435 IVVGRYPRPIDVFDGNGGQMVCE--L------HDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             EEEeccCcceeEEcCCCCEEeee--c------cCccccccccceeecccccceeccCCccceEEEEecC
Confidence            99999999999999999764432  1      1111134444 4799998867774  67888888654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=1.5e-17  Score=159.11  Aligned_cols=262  Identities=16%  Similarity=0.184  Sum_probs=187.9

Q ss_pred             EEEEEcCCCCeEEEEcCCCcEEEEeccccCC----CCc-----eeEeecCCCCCCCCEEEEEEe-------cCCCEEEEE
Q 005342          396 RESTSLPDADSAVCAKSLEKSVNLKLQLINE----PSE-----CRTLLLPDNSFGGRVVRLIYS-------HSGDFLVAL  459 (701)
Q Consensus       396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~----~~~-----~~~l~~~~~~~~~~v~~l~~s-------pdg~~l~s~  459 (701)
                      ....|+|||..|.+-+.|..+.+|++....-    .+.     ...+..   .....|...+|-       |+..++++.
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~---~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY---QEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe---ccCCEEEEEEeeeccccCCCccceeeec
Confidence            3578999999999999999999999852110    000     011111   123556666664       677888999


Q ss_pred             ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeC-CCCc
Q 005342          460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSL-ETFQ  536 (701)
Q Consensus       460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~-~~~~  536 (701)
                      +.+.-|++||.-+     |+..+++.  .||..           ..-....+++|+  |..|++|....|+++|+ +.|+
T Consensus       130 sr~~PIh~wdaft-----G~lraSy~--~ydh~-----------de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr  191 (406)
T KOG2919|consen  130 SRDQPIHLWDAFT-----GKLRASYR--AYDHQ-----------DEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR  191 (406)
T ss_pred             cccCceeeeeccc-----cccccchh--hhhhH-----------HhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence            9999999997633     22222211  11100           011244589999  99999998999999999 5565


Q ss_pred             EEE---Ee----cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC-
Q 005342          537 TLA---TF----ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-  606 (701)
Q Consensus       537 ~~~---~~----~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~-  606 (701)
                      .-.   ++    .+..+-|.+++|+|..  .+++|+....+-||.-..+.++..+-||.+.|+.+.|.++|+.|.+|+. 
T Consensus       192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence            222   11    1235668999999988  9999999999999988888999999999999999999999999999876 


Q ss_pred             CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEE--EEcCCCCEEEEE-ecCeEEEEECCC-Cceeeeeee----ee
Q 005342          607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI--QFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQVLL----IS  678 (701)
Q Consensus       607 D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v--~~spdg~~l~sg-~Dg~I~iwd~~~-g~~~~~l~~----i~  678 (701)
                      |..|-.||++...    .++..+. .|..  ..-..|  ...|+|++|++| .||.|++||+.+ |..+..+..    ++
T Consensus       272 ~dkIl~WDiR~~~----~pv~~L~-rhv~--~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN  344 (406)
T KOG2919|consen  272 DDKILCWDIRYSR----DPVYALE-RHVG--DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN  344 (406)
T ss_pred             CCeEEEEeehhcc----chhhhhh-hhcc--CccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccc
Confidence            7799999999742    3333233 3321  122344  446889999998 899999999988 776666655    88


Q ss_pred             EEEEEee
Q 005342          679 HIMFVQI  685 (701)
Q Consensus       679 ~~~fs~~  685 (701)
                      ++++.|+
T Consensus       345 gvslnP~  351 (406)
T KOG2919|consen  345 GVSLNPI  351 (406)
T ss_pred             ceecCcc
Confidence            8888776

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7.6e-17  Score=148.49  Aligned_cols=252  Identities=17%  Similarity=0.268  Sum_probs=179.1

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCC-----CCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINE-----PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~-----~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      |.+-+|+|.+++|+.|+.+|.|.+..+.....     .++..  .+++.+|.++|..++|.  ..+|++|+ ||.|+-|.
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~--iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLK--IVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcc--eeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            66678999999999999999999999875432     22211  13557899999999998  34566655 49999998


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEeCCeEEEEeCCCCcEEEEecCCCC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPP  546 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~  546 (701)
                      ++......+.      -++|....-...  ..  ..-..|+++...   ++.+.+|+|+.++-||+++|+..+++++|..
T Consensus        88 W~E~~es~~~------K~lwe~~~P~~~--~~--~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD  157 (325)
T KOG0649|consen   88 WNEEEESLAT------KRLWEVKIPMQV--DA--VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD  157 (325)
T ss_pred             ehhhhhhccc------hhhhhhcCcccc--Cc--ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence            7554321100      112221111100  00  112356777666   6677777799999999999999999999999


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC---------CCC-CeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342          547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG---------HQN-RITCLAYSLSLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~---------h~~-~V~~v~~spdg~~l~s~s~D~~I~vwd~  615 (701)
                      .+.+++-.... .|++|++||++++||.++++.++.+..         |.+ .|-+++-  +..++++|+. ..+.+|++
T Consensus       158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhL  234 (325)
T KOG0649|consen  158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHL  234 (325)
T ss_pred             eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEec
Confidence            99999885555 999999999999999999998887653         222 3444444  5668886654 58999999


Q ss_pred             CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee
Q 005342          616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ++.+..+..++.          ..+..+.|-.| ..++.|..+.+.-|.+ +|.+-...++
T Consensus       235 rsse~t~vfpip----------a~v~~v~F~~d-~vl~~G~g~~v~~~~l-~Gvl~a~ip~  283 (325)
T KOG0649|consen  235 RSSESTCVFPIP----------ARVHLVDFVDD-CVLIGGEGNHVQSYTL-NGVLQANIPV  283 (325)
T ss_pred             cCCCceEEEecc----------cceeEeeeecc-eEEEeccccceeeeee-ccEEEEeccC
Confidence            998877777776          77888888644 3444456667888887 5666555554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.77  E-value=2.7e-17  Score=157.79  Aligned_cols=236  Identities=15%  Similarity=0.199  Sum_probs=173.1

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCC-CeEEEEcCCCcEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDA-DSAVCAKSLEKSVN  418 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg-~~l~s~s~d~~v~i  418 (701)
                      +.-|.|+|-|+.++++...                             +.+|.. |+.+.++|+. +++++||.|.+|++
T Consensus       112 G~~GvIrVid~~~~~~~~~-----------------------------~~ghG~sINeik~~p~~~qlvls~SkD~svRl  162 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKN-----------------------------YRGHGGSINEIKFHPDRPQLVLSASKDHSVRL  162 (385)
T ss_pred             cceeEEEEEecchhhhccc-----------------------------eeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence            5567788888877766555                             357888 9999999975 68999999999999


Q ss_pred             EeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc----------cccc---ccee
Q 005342          419 LKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL----------EEEN---VNME  485 (701)
Q Consensus       419 w~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~----------g~~~---~~~~  485 (701)
                      |+++    +..|..+---..+|.+.|.++.|+++|.+|++++.|.++++|++...+...          .+..   ....
T Consensus       163 wnI~----~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~  238 (385)
T KOG1034|consen  163 WNIQ----TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK  238 (385)
T ss_pred             Eecc----CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence            9998    778877655567899999999999999999999999999999997544300          0000   0000


Q ss_pred             eEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeC-CCCc-------------EEEEecCCCCCeEE
Q 005342          486 SQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSL-ETFQ-------------TLATFANPPPIATY  550 (701)
Q Consensus       486 i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~-~~~~-------------~~~~~~~~~~~i~~  550 (701)
                      ..+.+..        -...|...|.|+.|-|+++++-+ ++.|..|-. +-.+             ...++......|.-
T Consensus       239 ~~fp~fs--------t~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf  310 (385)
T KOG1034|consen  239 THFPDFS--------TTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF  310 (385)
T ss_pred             ccccccc--------ccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE
Confidence            1111110        11257788888888899999988 999999986 2111             22334434445555


Q ss_pred             EEEc--CCC-eEEEEeCCCcEEEEeCCCCceE--EeecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          551 FILL--PQD-LFAFGFDDSSILVHCPCTKKTK--AKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       551 l~~s--pdg-~l~~gs~dg~I~iwd~~~~~~~--~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +.|+  |-+ .+|.|...|+|++||++...+.  .++..  ....|...+|+.||..|+..++|++|.-||..+
T Consensus       311 irf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  311 IRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             EEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence            5554  445 9999999999999999876552  22221  234789999999999999999999999999643

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2.6e-18  Score=189.47  Aligned_cols=262  Identities=16%  Similarity=0.159  Sum_probs=191.2

Q ss_pred             EEEEcCCCC-eEEEE----------cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCE----EEEEEC
Q 005342          397 ESTSLPDAD-SAVCA----------KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF----LVALTQ  461 (701)
Q Consensus       397 ~l~~spdg~-~l~s~----------s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~----l~s~s~  461 (701)
                      .++|+|++. ++|+|          +.+.++.||.+............. . .....+-..++|.+.|..    |+.|..
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~-s-~~s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVG-S-LQSSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccc-c-ccccccceeeeecccCCCccceeecccc
Confidence            578999987 55554          335566777765332222111100 0 123567889999998876    677777


Q ss_pred             CCcEEEEecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCC
Q 005342          462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF  535 (701)
Q Consensus       462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~  535 (701)
                      ||.|.+||....                 ..++.  ++.  -...|.+.|..+.|+   ++.+++|+ ||.|.|||+...
T Consensus        89 dG~I~ly~p~~~-----------------~~~~~~~~la--~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~  149 (1049)
T KOG0307|consen   89 DGNIVLYDPASI-----------------IANASEEVLA--TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP  149 (1049)
T ss_pred             CCceEEecchhh-----------------ccCcchHHHh--hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc
Confidence            999999976321                 01222  222  114799999999999   77999999 899999999875


Q ss_pred             cEEEEec--CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCC--CeEEEEEecCCC-EEEEEeCCC
Q 005342          536 QTLATFA--NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLN-VLVSSGADA  608 (701)
Q Consensus       536 ~~~~~~~--~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~--~V~~v~~spdg~-~l~s~s~D~  608 (701)
                      +.-.++.  ...+.|.+++|+..-  .+++++.+|.+.|||++..+.+-.+..|.+  .+..++|+|++. .|+++++|.
T Consensus       150 ~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd  229 (1049)
T KOG0307|consen  150 ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD  229 (1049)
T ss_pred             CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence            5433331  246789999999877  889999999999999999888877776554  478899999754 566666544


Q ss_pred             ---eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEEE-ecCeEEEEECCCCceeeeeee----eeE
Q 005342          609 ---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISH  679 (701)
Q Consensus       609 ---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~  679 (701)
                         .|.+||++.-    ..+++ +..+|.   .+|.++.|++.+ ++++++ .|+.|.+|+.++|+.+..++.    +..
T Consensus       230 ~~PviqlWDlR~a----ssP~k-~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd  301 (1049)
T KOG0307|consen  230 SAPVIQLWDLRFA----SSPLK-ILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD  301 (1049)
T ss_pred             CCceeEeeccccc----CCchh-hhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence               6999999873    35555 335776   899999999976 677774 899999999999999999987    788


Q ss_pred             EEEEeeEE
Q 005342          680 IMFVQIVV  687 (701)
Q Consensus       680 ~~fs~~~~  687 (701)
                      +.|.|..-
T Consensus       302 v~w~pr~P  309 (1049)
T KOG0307|consen  302 VQWCPRNP  309 (1049)
T ss_pred             eeecCCCc
Confidence            88866533

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=1.6e-16  Score=155.92  Aligned_cols=248  Identities=13%  Similarity=0.120  Sum_probs=179.8

Q ss_pred             eEEEEEcC-----CCCeEEE---EcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcE
Q 005342          395 SRESTSLP-----DADSAVC---AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATH  465 (701)
Q Consensus       395 V~~l~~sp-----dg~~l~s---~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i  465 (701)
                      |+..+|..     +.+++|.   ++..|...+--+.+   .|+.-.-.-...+|.++|..++|+| +...|++||.|.+|
T Consensus        30 Vs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k---~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v  106 (472)
T KOG0303|consen   30 VSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVK---TGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKV  106 (472)
T ss_pred             eeeeeccccccccCCceEEEEEecCCCcceeeccccc---ccccCCCCCCccCccccccccccCccCCceeecCCCCceE
Confidence            45555533     3455554   23334455544442   4433221113468999999999999 45678899999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~  541 (701)
                      .||.+..+.     ...       ++ + ..+. .+ .+|...|-.++|+   .+.|++++ |.+|.+||..+|+.+-++
T Consensus       107 ~vW~IPe~~-----l~~-------~l-t-epvv-~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l  170 (472)
T KOG0303|consen  107 MVWQIPENG-----LTR-------DL-T-EPVV-EL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL  170 (472)
T ss_pred             EEEECCCcc-----ccc-------Cc-c-cceE-EE-eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec
Confidence            999873321     110       00 1 1111 12 4899999999999   77888887 999999999999988888


Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC-CeEEEEEecCCCEEEEEe---CCCeEEEEECC
Q 005342          542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RITCLAYSLSLNVLVSSG---ADAQLCVWDAV  616 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~v~~spdg~~l~s~s---~D~~I~vwd~~  616 (701)
                      . |...|.+++|+.|| ++++.+.|.+|+|||.++++.+..-.+|.+ .-..+.|-.+|..+-||-   .+.++-+||..
T Consensus       171 ~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  171 D-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             C-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence            7 99999999999999 999999999999999999999998888887 455667888888544442   47789999988


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCc
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLN  669 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~  669 (701)
                      .-+  ....+.+++.+     +.|.---|.||.++++. | .|+.|+-|.+.+..
T Consensus       250 nl~--eP~~~~elDtS-----nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  250 NLE--EPIALQELDTS-----NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ccc--CcceeEEeccC-----CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            732  11223334333     67888889999998886 6 89999999997655

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=7.2e-16  Score=166.10  Aligned_cols=329  Identities=12%  Similarity=0.101  Sum_probs=215.9

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC----------CCCCeEEEEeccCCccccccccc-------c----C
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN----------ANNETISLKDFPTVSNLRYASSI-------L----T  365 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd----------s~d~~i~lWd~~~~~~~~~~~~~-------~----~  365 (701)
                      ..|+|+...||.|++.+.+|...+.  .+.+.|.          +.||+|++||...+..+++++--       +    .
T Consensus        37 ~~V~VyS~~Tg~~i~~l~~~~a~l~--s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a  114 (792)
T KOG1963|consen   37 NFVKVYSTATGECITSLEDHTAPLT--SVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQA  114 (792)
T ss_pred             CEEEEEecchHhhhhhcccccCccc--eeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHh
Confidence            6789999999999999999999999  7777776          88999999999998877764110       0    0


Q ss_pred             CC-----------CCCC---CCCc---------------------------ccccC------------CCC-C-CC--cc
Q 005342          366 DK-----------PNQE---GRPL---------------------------DASSG------------DDS-N-DS--SC  388 (701)
Q Consensus       366 ~~-----------~~~~---~~~~---------------------------~~s~~------------D~~-~-~~--~~  388 (701)
                      ++           ..+.   .+..                           ++.+.            +.. . ..  ..
T Consensus       115 ~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~  194 (792)
T KOG1963|consen  115 DISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKH  194 (792)
T ss_pred             CccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEeccccee
Confidence            00           0000   0000                           00000            000 0 00  00


Q ss_pred             ------ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccc-cCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342          389 ------FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQL-INEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT  460 (701)
Q Consensus       389 ------l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~-~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s  460 (701)
                            -..|.- +.+.++||+++++|+|..||.|.+|.--. ......+..+    +.|...|.+++|++||.+|++||
T Consensus       195 ~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l----HWH~~~V~~L~fS~~G~~LlSGG  270 (792)
T KOG1963|consen  195 TSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL----HWHHDEVNSLSFSSDGAYLLSGG  270 (792)
T ss_pred             eccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE----EecccccceeEEecCCceEeecc
Confidence                  124555 88999999999999999999999997542 1122223332    25889999999999999999999


Q ss_pred             CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE
Q 005342          461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT  537 (701)
Q Consensus       461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~  537 (701)
                      ..|.+.+|.+.++                   ..+++     +.-.++|..+.+|  ++..+... |+.|++....+...
T Consensus       271 ~E~VLv~Wq~~T~-------------------~kqfL-----PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~  326 (792)
T KOG1963|consen  271 REGVLVLWQLETG-------------------KKQFL-----PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI  326 (792)
T ss_pred             cceEEEEEeecCC-------------------Ccccc-----cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence            9999999966332                   12222     3456789999999  55555555 99999998766554


Q ss_pred             EEEecCC-----------CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe------------------------
Q 005342          538 LATFANP-----------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK------------------------  581 (701)
Q Consensus       538 ~~~~~~~-----------~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~------------------------  581 (701)
                      ..++.+.           .+-.+.++++|.- .++..+..|.|.+||+-+.+.+..                        
T Consensus       327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~  406 (792)
T KOG1963|consen  327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR  406 (792)
T ss_pred             hhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh
Confidence            4444322           2224667777744 666666777777777643221110                        


Q ss_pred             --------------------------------------------ecCCCCCeEEEEEec-CCC-EEEEEeCCCeEEEEEC
Q 005342          582 --------------------------------------------LKGHQNRITCLAYSL-SLN-VLVSSGADAQLCVWDA  615 (701)
Q Consensus       582 --------------------------------------------l~~h~~~V~~v~~sp-dg~-~l~s~s~D~~I~vwd~  615 (701)
                                                                  ...|...+...++.+ ... ..+++|.||.++||-+
T Consensus       407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~  486 (792)
T KOG1963|consen  407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVF  486 (792)
T ss_pred             hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEE
Confidence                                                        113554444444443 333 7889999999999988


Q ss_pred             CCCeeeee----eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCC
Q 005342          616 VGWKKLCS----KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL  668 (701)
Q Consensus       616 ~~g~~~~~----~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g  668 (701)
                      .+.+.+..    .....+..-|.   .++++.+|+.||..|++|.|++|.|||..+.
T Consensus       487 ~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  487 TDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             ecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence            44321110    11110111222   7899999999999999999999999999883

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.75  E-value=2.4e-16  Score=150.87  Aligned_cols=278  Identities=15%  Similarity=0.139  Sum_probs=189.0

Q ss_pred             EEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc--eEEEEEc---
Q 005342          334 CINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ--SRESTSL---  401 (701)
Q Consensus       334 ~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~--V~~l~~s---  401 (701)
                      .+.||||       +.|+.+.+|++...-.-..        .  .+. ..++      ....++-..+  |..-+|-   
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~--------~--~~~-~~~~------~~~~~r~~eg~tvydy~wYs~M  116 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK--------A--DGP-LNFS------KHLSYRYQEGETVYDYCWYSRM  116 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccC--------C--CCc-cccc------cceeEEeccCCEEEEEEeeecc
Confidence            6789999       8999999999864321111        0  000 0000      0000111111  5555553   


Q ss_pred             ----CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCC---CCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          402 ----PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFG---GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       402 ----pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~---~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                          |+..++|+.+.+.-|++||.-    +|+.+. +...-.|.   ....+++|+|||.+|++| ..+.|+++|....-
T Consensus       117 ~s~qP~t~l~a~ssr~~PIh~wdaf----tG~lra-Sy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpG  190 (406)
T KOG2919|consen  117 KSDQPSTNLFAVSSRDQPIHLWDAF----TGKLRA-SYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPG  190 (406)
T ss_pred             ccCCCccceeeeccccCceeeeecc----cccccc-chhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCC
Confidence                778899999999999999998    665443 11111132   345689999999997764 56889999872211


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY  550 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~  550 (701)
                      .              +...-..+.+ =..+..+-+.+++++   ...+++++ ...+-||.-..+.++..+-+|.+.|+.
T Consensus       191 r--------------~c~vy~t~~~-~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh  255 (406)
T KOG2919|consen  191 R--------------DCPVYTTVTK-GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH  255 (406)
T ss_pred             C--------------CCcchhhhhc-ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee
Confidence            0              0000000100 001346778899999   55889998 888999988888899999999999999


Q ss_pred             EEEcCCC-eEEEEeC-CCcEEEEeCCC-CceEEeecCCCC-CeEEEEE--ecCCCEEEEEeCCCeEEEEECCC-Ceeeee
Q 005342          551 FILLPQD-LFAFGFD-DSSILVHCPCT-KKTKAKLKGHQN-RITCLAY--SLSLNVLVSSGADAQLCVWDAVG-WKKLCS  623 (701)
Q Consensus       551 l~~spdg-~l~~gs~-dg~I~iwd~~~-~~~~~~l~~h~~-~V~~v~~--spdg~~l~s~s~D~~I~vwd~~~-g~~~~~  623 (701)
                      +.|.++| .+.+|.. |-.|..||++. +.++..+..|.+ .-..|-|  .|++++|++|+.||.|++||+++ |+..  
T Consensus       256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~--  333 (406)
T KOG2919|consen  256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV--  333 (406)
T ss_pred             EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc--
Confidence            9999999 8888776 56999999986 456667777766 4445555  57899999999999999999998 5321  


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecC
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG  658 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg  658 (701)
                         . ....+.   ..|+.++++|--.++|++...
T Consensus       334 ---s-v~~~~s---d~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  334 ---S-VTGNYS---DTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ---c-cccccc---ccccceecCcccceeeeccCc
Confidence               2 222333   789999999998888886443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.74  E-value=2.7e-16  Score=155.14  Aligned_cols=288  Identities=14%  Similarity=0.095  Sum_probs=190.6

Q ss_pred             ceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEE
Q 005342          329 WWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SREST  399 (701)
Q Consensus       329 ~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~  399 (701)
                      .+.  .+.|.++        +.|..|++|-+..+..-.--       ..++-             ...|..|.. |+.+.
T Consensus        15 pv~--s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-------~~V~y-------------~s~Ls~H~~aVN~vR   72 (434)
T KOG1009|consen   15 PVY--SVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-------MKVEY-------------LSSLSRHTRAVNVVR   72 (434)
T ss_pred             ceE--EEEeccCcccceecccCccceeeeeeeecCCCCCc-------eeEEE-------------eecccCCcceeEEEE
Confidence            355  6677666        78999999988765432210       00000             112668888 99999


Q ss_pred             EcCCCCeEEEEcCCCcEEEEeccccCC----C-----CceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342          400 SLPDADSAVCAKSLEKSVNLKLQLINE----P-----SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW  470 (701)
Q Consensus       400 ~spdg~~l~s~s~d~~v~iw~~~~~~~----~-----~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  470 (701)
                      |+|+|..||+|+.+|.|.+|...+...    +     .+.+.+.....+|...|..++|+||+.++++++.|+.+++||+
T Consensus        73 f~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv  152 (434)
T KOG1009|consen   73 FSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV  152 (434)
T ss_pred             EcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence            999999999999999999998762111    1     2223333345579999999999999999999999999999965


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec-----
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-----  542 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~-----  542 (701)
                                           ..|++..  ...+|...+..++|.  ++++++-+ |...+.+.+...+.+....     
T Consensus       153 ---------------------~~G~l~~--~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~  209 (434)
T KOG1009|consen  153 ---------------------HAGQLLA--ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMP  209 (434)
T ss_pred             ---------------------ccceeEe--eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEee
Confidence                                 5666554  225788889999998  88888877 7656666554332221110     


Q ss_pred             ---C-----------C----CCCeEEEEEcCCC-eEEEEeC----C-----CcEEEEeCCC-CceEEeecCCCCCeEEEE
Q 005342          543 ---N-----------P----PPIATYFILLPQD-LFAFGFD----D-----SSILVHCPCT-KKTKAKLKGHQNRITCLA  593 (701)
Q Consensus       543 ---~-----------~----~~~i~~l~~spdg-~l~~gs~----d-----g~I~iwd~~~-~~~~~~l~~h~~~V~~v~  593 (701)
                         .           |    ..-...++|+|+| ++++...    .     +..++|+... .++...+.+-..++..+.
T Consensus       210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr  289 (434)
T KOG1009|consen  210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVR  289 (434)
T ss_pred             ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEE
Confidence               0           1    1223667899999 7776431    1     2345665432 234445555555555555


Q ss_pred             Eec------------------CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342          594 YSL------------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI  655 (701)
Q Consensus       594 ~sp------------------dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg  655 (701)
                      |+|                  -+-.+|.++ .+.|+|||.++-+     ++.-+..-|-   ..++.++|++||..++.+
T Consensus       290 ~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~-----P~~~v~nihy---~~iTDiaws~dg~~l~vS  360 (434)
T KOG1009|consen  290 FSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLE-----PLAVVDNIHY---SAITDIAWSDDGSVLLVS  360 (434)
T ss_pred             eeeeEEEeccccccccccccccceEEEEee-cceEEEecccccc-----ceEEEeeeee---eeecceeecCCCcEEEEe
Confidence            554                  122334444 4689999999843     3332333444   889999999999999875


Q ss_pred             -ecCeEEEEECCCCce
Q 005342          656 -HEGQIDVYEAPTLNH  670 (701)
Q Consensus       656 -~Dg~I~iwd~~~g~~  670 (701)
                       .||...+-.++..++
T Consensus       361 S~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  361 STDGFCSLVTFEPWEL  376 (434)
T ss_pred             ccCCceEEEEEcchhc
Confidence             899877776665554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=5.5e-16  Score=168.69  Aligned_cols=277  Identities=13%  Similarity=0.167  Sum_probs=191.0

Q ss_pred             CCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcC--CCCeEEEEcCCCcEEEE
Q 005342          342 NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLP--DADSAVCAKSLEKSVNL  419 (701)
Q Consensus       342 ~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~sp--dg~~l~s~s~d~~v~iw  419 (701)
                      ....|+|||.+.++++..          |..+..               ....|+.+.+-.  |..++.+|+.||.|+||
T Consensus      1084 ~r~~i~vwd~e~~~~l~~----------F~n~~~---------------~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1084 DRERIRVWDWEKGRLLNG----------FDNGAF---------------PDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred             CcceEEEEecccCceecc----------ccCCCC---------------CCCccceeeeecccchhheeeeccCceEEEe
Confidence            356899999999999887          444322               112277777753  56789999999999999


Q ss_pred             eccccC-CCCceeEeecCCCC----CCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCC
Q 005342          420 KLQLIN-EPSECRTLLLPDNS----FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK  494 (701)
Q Consensus       420 ~~~~~~-~~~~~~~l~~~~~~----~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~  494 (701)
                      +-.... ...+...-..+..+    ..+.-.-+.|-....+|+++|.-..|+|||.                     ...
T Consensus      1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa---------------------~~E 1197 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDA---------------------HKE 1197 (1387)
T ss_pred             cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEec---------------------ccc
Confidence            876322 11111110011111    1111133456666566777666778888865                     433


Q ss_pred             eEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc---EEEEecCCCCC--eEEEEEcCCC--eEEEEe
Q 005342          495 LVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ---TLATFANPPPI--ATYFILLPQD--LFAFGF  563 (701)
Q Consensus       495 ~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~---~~~~~~~~~~~--i~~l~~spdg--~l~~gs  563 (701)
                      .++. ++..+....|++++-+   |+.+++|. ||.|++||.+...   .+..++.|...  |..+.+-+.|  .+++|+
T Consensus      1198 ~~~~-diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs 1276 (1387)
T KOG1517|consen 1198 QVVA-DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS 1276 (1387)
T ss_pred             eeEe-ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec
Confidence            4332 2444566778888777   78899998 9999999987543   46666777666  9999999999  799999


Q ss_pred             CCCcEEEEeCCCCceEE--eecCCC--C-CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCC
Q 005342          564 DDSSILVHCPCTKKTKA--KLKGHQ--N-RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT  638 (701)
Q Consensus       564 ~dg~I~iwd~~~~~~~~--~l~~h~--~-~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~  638 (701)
                      .||.|++||++......  ....|.  + ..+++..+++...+|+|+. +.|+||++........+.-..+.+...   +
T Consensus      1277 ~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~---g 1352 (1387)
T KOG1517|consen 1277 QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRI---G 1352 (1387)
T ss_pred             cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcC---C
Confidence            99999999999742222  122233  3 5899999999999999998 999999998753222222222332333   7


Q ss_pred             CeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342          639 IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN  669 (701)
Q Consensus       639 ~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~  669 (701)
                      .+.|++|+|..-++|+| .|.+|.||...+.+
T Consensus      1353 s~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             CcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            78999999999999998 89999999987654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=2.5e-16  Score=148.77  Aligned_cols=246  Identities=15%  Similarity=0.204  Sum_probs=172.8

Q ss_pred             CCCc-eEEEEEcCCCC-----eEEEEcCCCcEEEEeccccCCCCceeE-ee-cCCCCCCCCEEEEEEec-CCCEEEEEEC
Q 005342          391 DNNQ-SRESTSLPDAD-----SAVCAKSLEKSVNLKLQLINEPSECRT-LL-LPDNSFGGRVVRLIYSH-SGDFLVALTQ  461 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~-----~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~-~~~~~~~~~v~~l~~sp-dg~~l~s~s~  461 (701)
                      .|.- ++.+.|.|+..     +|||++.  .+++|.+......-++.. +. .....+..++++..|+. |.+++.++|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            5666 88899999863     5666554  799999873211111111 11 11224567899999986 5678888888


Q ss_pred             CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcE
Q 005342          462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT  537 (701)
Q Consensus       462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~  537 (701)
                      |-+..|||++++                  ..+.+.+..+  .|...|.+++|.   -+.+++.+ ||.+++||++....
T Consensus       172 DTTCTiWdie~~------------------~~~~vkTQLI--AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  172 DTTCTIWDIETG------------------VSGTVKTQLI--AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             cCeEEEEEEeec------------------cccceeeEEE--ecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            999999987443                  1222333322  599999999999   35688888 99999999987653


Q ss_pred             EEE-ec--CCCCCeEEEEEcCCC--eEEEEeCCC-cEEEEeCCC-CceEEeecCCCCCeEEEEEecC-CCEEEEEeCCCe
Q 005342          538 LAT-FA--NPPPIATYFILLPQD--LFAFGFDDS-SILVHCPCT-KKTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQ  609 (701)
Q Consensus       538 ~~~-~~--~~~~~i~~l~~spdg--~l~~gs~dg-~I~iwd~~~-~~~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~  609 (701)
                      -.. ++  ....+...++|++..  ++|+-..|+ .|.|.|++. ...+.++++|.+.|+.++|.|. ...|+|+++|..
T Consensus       232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q  311 (364)
T KOG0290|consen  232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ  311 (364)
T ss_pred             ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence            222 22  224567889999988  777755554 899999987 4678899999999999999995 569999999999


Q ss_pred             EEEEECCCCee-eeeeeeeeccCCCCCCCCCeEEEEEcCC-CCEEEEEecCeEEEE
Q 005342          610 LCVWDAVGWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVY  663 (701)
Q Consensus       610 I~vwd~~~g~~-~~~~~l~~~~~~~~~~~~~v~~v~~spd-g~~l~sg~Dg~I~iw  663 (701)
                      +-+||+...-. -...++-....     ++.|+.+.|+|. +.+++.+.++.+.|.
T Consensus       312 aliWDl~q~~~~~~~dPilay~a-----~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  312 ALIWDLQQMPRENGEDPILAYTA-----GGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             EEEEecccccccCCCCchhhhhc-----cceeeeeeecccCCCEEEEEecCeeeEE
Confidence            99999987321 00112111111     278999999964 788888766665543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.73  E-value=3.6e-16  Score=154.24  Aligned_cols=273  Identities=15%  Similarity=0.122  Sum_probs=196.0

Q ss_pred             CCCceEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCc--eeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          391 DNNQSRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       391 ~h~~V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~--~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      .|+.|.++.|.+++. .++||+.|..|++|.++.....+.  .......+..|...|.++.|+|+|..+++|+.+|.+.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            455599999999887 999999999999999976544442  12222245679999999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCC-----C--eEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSS-----K--LVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT  537 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~-----~--~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~  537 (701)
                      |.......             .+.++     .  ..+.+.+ .+|...|..++|+  +.++++++ |+.+++||+..|..
T Consensus        92 Wk~~~~~~-------------~~~d~e~~~~ke~w~v~k~l-r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l  157 (434)
T KOG1009|consen   92 WKQGDVRI-------------FDADTEADLNKEKWVVKKVL-RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL  157 (434)
T ss_pred             EEecCcCC-------------ccccchhhhCccceEEEEEe-cccccchhhhhccCCCceeeeeeccceEEEEEecccee
Confidence            97642111             01111     1  1222223 4799999999999  88899999 99999999999999


Q ss_pred             EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec--------C-----------CC----CCeEEEE
Q 005342          538 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--------G-----------HQ----NRITCLA  593 (701)
Q Consensus       538 ~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~--------~-----------h~----~~V~~v~  593 (701)
                      ...+..|...+..++|.|-+ ++++-+.|...+.+++...+.++...        +           |.    .....++
T Consensus       158 ~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls  237 (434)
T KOG1009|consen  158 LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS  237 (434)
T ss_pred             EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence            99999999999999999999 99999999877777665433222111        0           21    2456789


Q ss_pred             EecCCCEEEEEeC----C-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC----------------
Q 005342          594 YSLSLNVLVSSGA----D-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD----------------  648 (701)
Q Consensus       594 ~spdg~~l~s~s~----D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd----------------  648 (701)
                      |+|||.++++.+.    +     ++.++++-+.-    ..+...++...    .++..+.|+|-                
T Consensus       238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l----~rP~~~lp~~~----k~~lavr~~pVy~elrp~~~~~~~~~l  309 (434)
T KOG1009|consen  238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL----KRPAARLPSPK----KPALAVRFSPVYYELRPLSSEKFLFVL  309 (434)
T ss_pred             cCCCCcEEEcccceeeeCCceeeceeEeeccccc----cCceeecCCCC----cceEEEEeeeeEEEecccccccccccc
Confidence            9999999987542    2     23456554431    12222132222    44555555551                


Q ss_pred             --CCEEEEEecCeEEEEECCCCceeeeeee-----eeEEEEEee
Q 005342          649 --QIHLLSIHEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQI  685 (701)
Q Consensus       649 --g~~l~sg~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~  685 (701)
                        +-.+|....+.|+|||.++.+++....+     |+.++||++
T Consensus       310 pyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~d  353 (434)
T KOG1009|consen  310 PYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDD  353 (434)
T ss_pred             ccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCC
Confidence              2234456788999999999888887776     999999987

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.73  E-value=2.4e-16  Score=157.18  Aligned_cols=251  Identities=10%  Similarity=0.109  Sum_probs=170.0

Q ss_pred             EEEcCCCCeEEEEcCCC---cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-------CCCEEEEEECCCcEEE
Q 005342          398 STSLPDADSAVCAKSLE---KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-------SGDFLVALTQTATHKL  467 (701)
Q Consensus       398 l~~spdg~~l~s~s~d~---~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-------dg~~l~s~s~dg~i~v  467 (701)
                      +..-|+..+++++-.+.   .+.+|-.++.. . ..+. ...+ --.....|+.|..       .|+++|.|+.|..|.|
T Consensus       131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e-~-nlYv-HHD~-ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI  206 (463)
T KOG0270|consen  131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEE-E-NLYV-HHDF-ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI  206 (463)
T ss_pred             ceeccCCcEEEEeeccCCceEEEEEEEcCCC-c-ceeE-ecce-eccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence            45678777777775443   34444443211 1 1111 0000 0123335666642       3679999999999999


Q ss_pred             EecCCCCc-----cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEE
Q 005342          468 WKWQSNKQ-----SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTL  538 (701)
Q Consensus       468 wd~~~~~~-----~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~  538 (701)
                      ||+.--..     ..|......     ....++  ......+|+..|.+++|+   .+.|++|+ |.+|.+||+.++++.
T Consensus       207 WDLDI~d~v~P~~~LGs~~sk~-----~~k~~k--~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~  279 (463)
T KOG0270|consen  207 WDLDIVDAVLPCVTLGSKASKK-----KKKKGK--RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK  279 (463)
T ss_pred             eccccccccccceeechhhhhh-----hhhhcc--cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc
Confidence            99843322     111100000     000000  000113788889999998   77899999 999999999999999


Q ss_pred             EEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-EEeecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEE
Q 005342          539 ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWD  614 (701)
Q Consensus       539 ~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~v~~spdg-~~l~s~s~D~~I~vwd  614 (701)
                      .++..|...|.++.|+|..  .+++|+.|+++.+.|.+.... -..++ -.+.|-.++|.|.. ..++++.+||+++-+|
T Consensus       280 ~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D  358 (463)
T KOG0270|consen  280 SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFD  358 (463)
T ss_pred             eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeee
Confidence            9999899999999999998  999999999999999985222 22233 45679999999955 4677888999999999


Q ss_pred             CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE-EE-EecCeEEEEECCCC
Q 005342          615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LS-IHEGQIDVYEAPTL  668 (701)
Q Consensus       615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l-~s-g~Dg~I~iwd~~~g  668 (701)
                      ++...    +++.++. .|.   .+|.++++++.-+.+ ++ |.|+.+++|++..-
T Consensus       359 ~R~~~----~~vwt~~-AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  359 IRNPG----KPVWTLK-AHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             cCCCC----CceeEEE-ecc---CCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence            99852    3444343 443   899999999876554 44 48999999999643

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=3.8e-17  Score=167.34  Aligned_cols=260  Identities=15%  Similarity=0.170  Sum_probs=183.0

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCc--eeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~--~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i  465 (701)
                      +..|.. |+.++|+|-...|++|+.||.+++|++++......  ... -+++.+|.++|.|+++++++..+++|+.||+|
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~ep-i~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEP-ILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceee-eEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            667888 99999999999999999999999999954222221  111 13456799999999999999999999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      +.|++..+.-+..         .+|+....   ..+ .||.+.|+.++++  ...|++++ ||+++.|+...... .+|.
T Consensus       369 ~~w~~p~n~dp~d---------s~dp~vl~---~~l-~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~  434 (577)
T KOG0642|consen  369 RCWNLPPNQDPDD---------SYDPSVLS---GTL-LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFG  434 (577)
T ss_pred             eeeccCCCCCccc---------ccCcchhc---cce-eccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccC
Confidence            9998753321110         01221111   112 4899999999999  77788888 99999999865544 4444


Q ss_pred             CCCCC--eEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecC-------CCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342          543 NPPPI--ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-------HQNRITCLAYSLSLNVLVSSGADAQLC  611 (701)
Q Consensus       543 ~~~~~--i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~-------h~~~V~~v~~spdg~~l~s~s~D~~I~  611 (701)
                      .....  ..++.+-...  ..++...-+.-.++++.....+..+..       -...++.+.++|.+.+.+++..|+.|+
T Consensus       435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir  514 (577)
T KOG0642|consen  435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR  514 (577)
T ss_pred             CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee
Confidence            33222  2444444333  233333333444445544444444332       113578889999999999999999999


Q ss_pred             EEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342          612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       612 vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~  672 (701)
                      ++|..+|+++....      .|.   ..++++++.|+|.+|++| .|+.+++|.+....++.
T Consensus       515 ~~dn~~~~~l~s~~------a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  515 FFDNKTGKILHSMV------AHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             cccccccccchhee------ecc---ceecceeecCCCceEEeecCCceeehhhccchheee
Confidence            99999986443222      222   789999999999999997 89999999997666554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=2.2e-14  Score=150.86  Aligned_cols=239  Identities=13%  Similarity=0.099  Sum_probs=156.3

Q ss_pred             eEEEEEcCCCCeEEEE-cCCCcEEEEeccccCCCCceeEee-cCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecC
Q 005342          395 SRESTSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQ  471 (701)
Q Consensus       395 V~~l~~spdg~~l~s~-s~d~~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~  471 (701)
                      ...++++|++++|+++ ..++.|.+|++.+   .+...... .+   .......++++|+|+++++++. ++.+.+|+++
T Consensus        37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~---~g~l~~~~~~~---~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~  110 (330)
T PRK11028         37 VQPMVISPDKRHLYVGVRPEFRVLSYRIAD---DGALTFAAESP---LPGSPTHISTDHQGRFLFSASYNANCVSVSPLD  110 (330)
T ss_pred             CccEEECCCCCEEEEEECCCCcEEEEEECC---CCceEEeeeec---CCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence            5578999999998765 4578899999862   23322211 11   2235678999999999888876 7999999874


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEE-------E
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLA-------T  540 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~-------~  540 (701)
                      ...                 ........ +  .+.....+++++  |+++++++  ++.|.+||+.+...+.       .
T Consensus       111 ~~g-----------------~~~~~~~~-~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~  170 (330)
T PRK11028        111 KDG-----------------IPVAPIQI-I--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT  170 (330)
T ss_pred             CCC-----------------CCCCceee-c--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence            210                 00011110 1  122345667788  77876666  6999999997633221       1


Q ss_pred             ecCCCCCeEEEEEcCCC-eEEEEeC-CCcEEEEeCCC--C--ceEEeecCC------CCCeEEEEEecCCCEEEEEe-CC
Q 005342          541 FANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCT--K--KTKAKLKGH------QNRITCLAYSLSLNVLVSSG-AD  607 (701)
Q Consensus       541 ~~~~~~~i~~l~~spdg-~l~~gs~-dg~I~iwd~~~--~--~~~~~l~~h------~~~V~~v~~spdg~~l~s~s-~D  607 (701)
                      .. .......++|+|+| +++++.. ++.|.+||+..  +  +.+..+..+      ......+.++|+|++++++. .+
T Consensus       171 ~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~  249 (330)
T PRK11028        171 TV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA  249 (330)
T ss_pred             cC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC
Confidence            11 23446789999999 7766665 89999999973  3  234443321      12234688999999888875 47


Q ss_pred             CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC
Q 005342          608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP  666 (701)
Q Consensus       608 ~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~  666 (701)
                      +.|.+|++...... ...+..+..+     .....+.++|||++|+++  .+++|.+|++.
T Consensus       250 ~~I~v~~i~~~~~~-~~~~~~~~~~-----~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        250 SLISVFSVSEDGSV-LSFEGHQPTE-----TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CeEEEEEEeCCCCe-EEEeEEEecc-----ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            89999999653211 1222222222     234578999999999985  58999999874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.71  E-value=8e-14  Score=150.33  Aligned_cols=309  Identities=20%  Similarity=0.281  Sum_probs=220.1

Q ss_pred             CcccccccCccc-eeEEEeecCc-ceeeeEEEE-ccC---------CCCCeEEEEeccC-CccccccccccCCCCCCCCC
Q 005342          307 DKLKFPSMDKSR-LLSLIKQIMD-WWVPYCINV-MPN---------ANNETISLKDFPT-VSNLRYASSILTDKPNQEGR  373 (701)
Q Consensus       307 ~~i~iwd~~~~~-~~~~l~~h~~-~v~~~~l~f-spd---------s~d~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~  373 (701)
                      +.+.+|+...+. ....+..+.. .+.  .+.+ +++         ..|+.+.+||... ......              
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------------  150 (466)
T COG2319          87 GTIKLWDLDNGEKLIKSLEGLHDSSVS--KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT--------------  150 (466)
T ss_pred             CcEEEEEcCCCceeEEEEeccCCCcee--eEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEE--------------
Confidence            788899988887 7777776443 566  4444 555         4489999999987 333322              


Q ss_pred             CcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcC-CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec
Q 005342          374 PLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH  451 (701)
Q Consensus       374 ~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp  451 (701)
                                     +..|.. |..++|+|++..+++++. |+.+++|+..    .+....   ...+|...|.+++|+|
T Consensus       151 ---------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~v~~~~~~~  208 (466)
T COG2319         151 ---------------LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR----TGKPLS---TLAGHTDPVSSLAFSP  208 (466)
T ss_pred             ---------------EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC----CCceEE---eeccCCCceEEEEEcC
Confidence                           346777 999999999999999986 9999999997    333333   2334889999999999


Q ss_pred             CCC-EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeE
Q 005342          452 SGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI  527 (701)
Q Consensus       452 dg~-~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I  527 (701)
                      ++. .+++++.|+.+.+||.                     ..+......+ .+|.... ...|+  +..+++++ |+.+
T Consensus       209 ~~~~~~~~~~~d~~i~~wd~---------------------~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~d~~~  265 (466)
T COG2319         209 DGGLLIASGSSDGTIRLWDL---------------------STGKLLRSTL-SGHSDSV-VSSFSPDGSLLASGSSDGTI  265 (466)
T ss_pred             CcceEEEEecCCCcEEEEEC---------------------CCCcEEeeec-CCCCcce-eEeECCCCCEEEEecCCCcE
Confidence            998 5555588999999965                     2333332112 3455553 22666  66777777 9999


Q ss_pred             EEEeCCCCcE-EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec--CCCCCeEEEEEecCCCEEEE
Q 005342          528 SIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       528 ~iwd~~~~~~-~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~v~~spdg~~l~s  603 (701)
                      ++||+..... ...+.+|...+.++.++|++ .+++++.|+.+.+||..+........  +|...+..+.|.+++..++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (466)
T COG2319         266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS  345 (466)
T ss_pred             EEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEE
Confidence            9999987664 44556788899999999988 67778888999999998887776665  78888999999434355555


Q ss_pred             E-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCceeeeeee----
Q 005342          604 S-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQVLL----  676 (701)
Q Consensus       604 ~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~~~~~l~~----  676 (701)
                      + ..|+.+.+|+.....  ......    ..    ..+..+.+++ ...+.. + .++.+.+|+............    
T Consensus       346 ~~~~d~~~~~~~~~~~~--~~~~~~----~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (466)
T COG2319         346 GGSDDGTIRLWDLRTGK--PLKTLE----GH----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR  414 (466)
T ss_pred             eecCCCcEEeeecCCCc--eeEEec----CC----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCc
Confidence            5 688999999999864  111111    11    2388999999 544444 3 789999999988877655543    


Q ss_pred             eeEEEEEeeEE
Q 005342          677 ISHIMFVQIVV  687 (701)
Q Consensus       677 i~~~~fs~~~~  687 (701)
                      +....+++...
T Consensus       415 ~~~~~~~~~~~  425 (466)
T COG2319         415 VTSLDFSPDGK  425 (466)
T ss_pred             EEEEEECCCCc
Confidence            44555544433

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.71  E-value=5.5e-16  Score=148.89  Aligned_cols=283  Identities=10%  Similarity=0.155  Sum_probs=194.2

Q ss_pred             EeecCcceeeeEEEEccC-----------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccC
Q 005342          323 IKQIMDWWVPYCINVMPN-----------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFND  391 (701)
Q Consensus       323 l~~h~~~v~~~~l~fspd-----------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~  391 (701)
                      .+.|+..+.  .++|++-           ...+++.+|.....-.++.+          +...+              ..
T Consensus        34 ~ed~~~~I~--gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~l----------q~y~D--------------~d   87 (385)
T KOG1034|consen   34 KEDHNKPIF--GVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLL----------QSYAD--------------ED   87 (385)
T ss_pred             hccCCCccc--eeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeee----------eeccC--------------CC
Confidence            466777888  8888854           45567777776554433331          11110              13


Q ss_pred             CCc-eEEEEEcCC----CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcE
Q 005342          392 NNQ-SRESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATH  465 (701)
Q Consensus       392 h~~-V~~l~~spd----g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i  465 (701)
                      |+. ...++|+-|    ..++|.|+.-|.|+|.|+.    .+++..   ...+|...|..+.+.|+. ++++++|.|.+|
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~----~~~~~~---~~~ghG~sINeik~~p~~~qlvls~SkD~sv  160 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV----SGQCSK---NYRGHGGSINEIKFHPDRPQLVLSASKDHSV  160 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc----hhhhcc---ceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence            444 566777644    4588999999999999998    565555   445799999999999975 688899999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeeccc--CCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE-
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA-  539 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~-  539 (701)
                      ++||+                     ++..++.. +-  .+|.+.|.++.|+  |.++++++ |.++++|++...+... 
T Consensus       161 RlwnI---------------------~~~~Cv~V-fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~  218 (385)
T KOG1034|consen  161 RLWNI---------------------QTDVCVAV-FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK  218 (385)
T ss_pred             EEEec---------------------cCCeEEEE-ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence            99976                     44444321 11  3899999999999  99999999 9999999997432111 


Q ss_pred             -----Ee----------------------cCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCC-CCc-------------e
Q 005342          540 -----TF----------------------ANPPPIATYFILLPQDLFAFGFDDSSILVHCPC-TKK-------------T  578 (701)
Q Consensus       540 -----~~----------------------~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~-~~~-------------~  578 (701)
                           .+                      .-|...|-|+.|-.+ ++++-+-++.|..|... -++             .
T Consensus       219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti  297 (385)
T KOG1034|consen  219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTI  297 (385)
T ss_pred             hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh-heeecccCceEEEEecchhhhhhhccCCCccceee
Confidence                 01                      012333344444332 78888888999999862 111             2


Q ss_pred             EEeecCCCCCeEEE--EEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E
Q 005342          579 KAKLKGHQNRITCL--AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I  655 (701)
Q Consensus       579 ~~~l~~h~~~V~~v--~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g  655 (701)
                      +.++.-....|+-+  +|.|-+++||.|...|.|++||++..++.....+.   ...  ....|...+||.||..|+. .
T Consensus       298 ~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~---~s~--~~~tVRQ~sfS~dgs~lv~vc  372 (385)
T KOG1034|consen  298 LGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT---HSK--SGSTVRQTSFSRDGSILVLVC  372 (385)
T ss_pred             eeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE---ecc--ccceeeeeeecccCcEEEEEe
Confidence            23333334455555  45566889999999999999999986542222222   111  2277999999999999887 5


Q ss_pred             ecCeEEEEECC
Q 005342          656 HEGQIDVYEAP  666 (701)
Q Consensus       656 ~Dg~I~iwd~~  666 (701)
                      +|++|.-||..
T Consensus       373 dd~~Vwrwdrv  383 (385)
T KOG1034|consen  373 DDGTVWRWDRV  383 (385)
T ss_pred             CCCcEEEEEee
Confidence            99999999863

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=4.6e-15  Score=145.01  Aligned_cols=233  Identities=14%  Similarity=0.200  Sum_probs=170.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC--CcEEEEecCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT--ATHKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d--g~i~vwd~~~  472 (701)
                      +..+.|..|...|..|+.||. ++++.+.   .+++...    ......|..+-|+.+  .++..+.+  +.+++++.  
T Consensus         8 i~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~---~~k~~~~----~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~--   75 (391)
T KOG2110|consen    8 INFIGFNQDSTLLSVGSKDGY-KIFSCSP---FEKCFSK----DTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHF--   75 (391)
T ss_pred             eeeeeeccceeEEEccCCCce-eEEecCc---hHHhhcc----cCCCeEEEEeecccc--eeEEEecCCCceEEEEEc--
Confidence            677889999999999999874 6676653   2222221    112345666677644  45555543  34666643  


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCCCCcEEEEecCC---CCCeE
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANP---PPIAT  549 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~~~~~~~~~~---~~~i~  549 (701)
                                         ..+..+...   .....|.++.++.++|+++=...|+|||+++.+.++++...   ...+.
T Consensus        76 -------------------Kk~~~ICe~---~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~  133 (391)
T KOG2110|consen   76 -------------------KKKTTICEI---FFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLC  133 (391)
T ss_pred             -------------------ccCceEEEE---ecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceE
Confidence                               444444331   24568889999966666666555999999999999888643   44466


Q ss_pred             EEEEcCCC-eEEEE--eCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCeeeeeee
Q 005342          550 YFILLPQD-LFAFG--FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWKKLCSKF  625 (701)
Q Consensus       550 ~l~~spdg-~l~~g--s~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~-I~vwd~~~g~~~~~~~  625 (701)
                      .+++++.+ ++|.-  ...|.|++||..+-+.+..+..|++.+-+++|+|+|.+|||+|+.|+ |||+++.+|.+...  
T Consensus       134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e--  211 (391)
T KOG2110|consen  134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE--  211 (391)
T ss_pred             eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee--
Confidence            66666666 77753  34689999999999999999999999999999999999999999997 59999999864432  


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCC
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL  668 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g  668 (701)
                         +..|-.+  ..|.+++|+||+++|++ |+.++|+|+.+++-
T Consensus       212 ---FRRG~~~--~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  212 ---FRRGTYP--VSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             ---eeCCcee--eEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence               4344433  77899999999999998 58899999998653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2.8e-15  Score=138.22  Aligned_cols=225  Identities=15%  Similarity=0.170  Sum_probs=161.7

Q ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEE
Q 005342          442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS  521 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s  521 (701)
                      ..|.+-+|+|.++++++|+.+|.|.+..+.+-.....           .+.....+.. . ..|+++|+.++|.+.+|++
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-----------~~~gk~~iv~-e-qahdgpiy~~~f~d~~Lls   77 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-----------EPPGKLKIVP-E-QAHDGPIYYLAFHDDFLLS   77 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-----------CCCCCcceee-c-cccCCCeeeeeeehhheee
Confidence            3456668999999999999999999997744321000           1112222211 2 5899999999999889999


Q ss_pred             EeCCeEEEEeCCCCcE------EEEe--c-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC
Q 005342          522 ASGGKISIFSLETFQT------LATF--A-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN  587 (701)
Q Consensus       522 ~sdg~I~iwd~~~~~~------~~~~--~-----~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~  587 (701)
                      |+||.|+-|..+....      +...  +     ..-..|+++...|.. -++.++.|+.++-||+++|+..++++||+.
T Consensus        78 ~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD  157 (325)
T KOG0649|consen   78 GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD  157 (325)
T ss_pred             ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence            9999999998654321      1111  1     123467999999988 666666999999999999999999999999


Q ss_pred             CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec-----cCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEE
Q 005342          588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-----QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV  662 (701)
Q Consensus       588 ~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~-----~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~i  662 (701)
                      .|.+++--.....+.||++||++|+||.++++.+.  .+...     ...|.  ...|.+++-  +..++++|..-.+.+
T Consensus       158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~--g~wigala~--~edWlvCGgGp~lsl  231 (325)
T KOG0649|consen  158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDW--GKWIGALAV--NEDWLVCGGGPKLSL  231 (325)
T ss_pred             eeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCccc--CceeEEEec--cCceEEecCCCceeE
Confidence            99999884444568899999999999999986433  33211     11111  144555554  456899987788999


Q ss_pred             EECCCCceeeeeee---eeEEEEEee
Q 005342          663 YEAPTLNHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       663 wd~~~g~~~~~l~~---i~~~~fs~~  685 (701)
                      |++++.++..+++-   +..+.|-.+
T Consensus       232 whLrsse~t~vfpipa~v~~v~F~~d  257 (325)
T KOG0649|consen  232 WHLRSSESTCVFPIPARVHLVDFVDD  257 (325)
T ss_pred             EeccCCCceEEEecccceeEeeeecc
Confidence            99999988877765   666666433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.70  E-value=1.1e-13  Score=149.34  Aligned_cols=295  Identities=22%  Similarity=0.294  Sum_probs=214.0

Q ss_pred             EEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCc-cccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVS-NLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       322 ~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      .+..|...+.  ++.|.+.       +.|+.+.+|+...+. ....          +.+.                  +.
T Consensus        60 ~~~~~~~~i~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----------~~~~------------------~~  109 (466)
T COG2319          60 LLRGHEDSIT--SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS----------LEGL------------------HD  109 (466)
T ss_pred             eeeeccceEE--EEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE----------Eecc------------------CC
Confidence            4567788888  8888887       679999999998876 3333          1111                  11


Q ss_pred             -ceEEEEE-cCCCC-eEEEEcC-CCcEEEEeccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEE
Q 005342          394 -QSRESTS-LPDAD-SAVCAKS-LEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKL  467 (701)
Q Consensus       394 -~V~~l~~-spdg~-~l~s~s~-d~~v~iw~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~v  467 (701)
                       .+..+.+ ++++. .++..+. |+.+.+|+..    . .....   ....|...|.++.|+|++..+++++. |+.+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLS----TPGKLIR---TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL  182 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEec----CCCeEEE---EEecCcccEEEEEECCCCCEEEecCCCCCceEE
Confidence             2555666 88888 5555454 8999999997    3 22222   22358899999999999998888886 999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EEEEEe-CCeEEEEeCCCCcEEE-Eec
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLA-TFA  542 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l~s~s-dg~I~iwd~~~~~~~~-~~~  542 (701)
                      |+.                     ..+..... + .+|...|.+++++  +. .+++++ |+.|++||...+.... .+.
T Consensus       183 ~~~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~  239 (466)
T COG2319         183 WDL---------------------RTGKPLST-L-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS  239 (466)
T ss_pred             EEc---------------------CCCceEEe-e-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC
Confidence            966                     32332221 2 3588899999999  55 455546 8999999998888877 688


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      +|.... ...|+|++ .+++++.|+.+++||...... +..+.+|...+.++.|+|++..+++++.|+.+.+||..+...
T Consensus       240 ~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         240 GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence            787765 44899999 888999999999999987654 444567889999999999888888899999999999888653


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCceeeeeee---eeEEEEEe
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQ  684 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~  684 (701)
                      .....    ...|.   ..+..+.|++++..++.+  .|+.+.+|+............   +..+.+++
T Consensus       319 ~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (466)
T COG2319         319 LSSLT----LKGHE---GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP  380 (466)
T ss_pred             EEEee----ecccC---CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC
Confidence            32222    12443   568999994343555554  688999999988773333332   45666655

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=3.7e-15  Score=145.82  Aligned_cols=252  Identities=10%  Similarity=0.083  Sum_probs=178.2

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +.+|.+ |+++.|+.++++|++|+.|..+++|++.+.-.......+.+....|...|.|++|....+++.+|+.+++|..
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence            679999 9999999999999999999999999997432211112233333457789999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc-EEEE--e
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-TLAT--F  541 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~-~~~~--~  541 (701)
                      -|+++                     .+.+...-.....+.|+.+..+  .+.+++.+ +|.|.+||++... ....  .
T Consensus       132 HDiEt---------------------~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~  190 (609)
T KOG4227|consen  132 HDIET---------------------KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP  190 (609)
T ss_pred             eeccc---------------------ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee
Confidence            97643                     3322110111234588888888  88888888 8999999998654 2222  2


Q ss_pred             cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-----------------------------e-----------E
Q 005342          542 ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-----------------------------T-----------K  579 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~-----------------------------~-----------~  579 (701)
                      ........++.|+|..  +|++++..+-+-+||++...                             .           .
T Consensus       191 AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~  270 (609)
T KOG4227|consen  191 ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLY  270 (609)
T ss_pred             cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEE
Confidence            2235567889999998  89999999999999976321                             0           0


Q ss_pred             --------Eeec-CCC-------CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee------------------eeeee
Q 005342          580 --------AKLK-GHQ-------NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK------------------LCSKF  625 (701)
Q Consensus       580 --------~~l~-~h~-------~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~------------------~~~~~  625 (701)
                              ..++ .|.       ..+.+++|-.|- -+++||++-.|++|.+.....                  .-...
T Consensus       271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~  349 (609)
T KOG4227|consen  271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE  349 (609)
T ss_pred             eeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence                    0011 121       134556665443 489999999999998864210                  11122


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                      +. +..||.   +.++.|.|+|...+|+++ -.+.++||.-.
T Consensus       350 ~~-VLrGHR---Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  350 LT-VLRGHR---SVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             eE-EEeccc---ccccceeecCCcceEeccchhhheeccccc
Confidence            22 344676   889999999999999884 78999999764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=4.8e-16  Score=159.41  Aligned_cols=251  Identities=16%  Similarity=0.119  Sum_probs=180.7

Q ss_pred             EEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc
Q 005342          322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ  394 (701)
Q Consensus       322 ~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~  394 (701)
                      ++..|.+.+.  .+.|.|.       +.|+++++|+++....-..        ..++             +...|++|.+
T Consensus       289 tl~s~~d~ir--~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~--------~~~e-------------pi~tfraH~g  345 (577)
T KOG0642|consen  289 TLRSHDDCIR--ALAFHPSEPVLITASEDGTLKLWNLQKAKKSAE--------KDVE-------------PILTFRAHEG  345 (577)
T ss_pred             eeecchhhhh--hhhcCCCCCeEEEeccccchhhhhhcccCCccc--------ccee-------------eeEEEecccC
Confidence            6788889899  8888877       8999999999954111110        0000             1223789999


Q ss_pred             -eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCC---CceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342          395 -SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP---SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW  470 (701)
Q Consensus       395 -V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~---~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  470 (701)
                       |-|+++.+++..+++|+.||+|+.|++....++   .....+.-.+.||.+.|+.+++|+...+|++++.||+++.|+.
T Consensus       346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP  425 (577)
T ss_pred             ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence             999999999999999999999999976511111   1112333345689999999999999999999999999999976


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCE--EEEEe--CCeEEEEeCCCCcEEEEecCC--
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH--LFSAS--GGKISIFSLETFQTLATFANP--  544 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~--l~s~s--dg~I~iwd~~~~~~~~~~~~~--  544 (701)
                      .....                    +... ....+ +...++.+....  +..++  -+.-.++++.+...+..+...  
T Consensus       426 ~~~~~--------------------~~f~-~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~  483 (577)
T KOG0642|consen  426 TEESP--------------------CTFG-EPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS  483 (577)
T ss_pred             CCcCc--------------------cccC-Ccccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence            33211                    1100 11122 233344444111  11111  344445555555544444311  


Q ss_pred             -----CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          545 -----PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       545 -----~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                           ...+..+.++|.+ +.+++.+|+.|+++|..+++++.....|...++++++.|+|.+|++++.|+.+++|.+..
T Consensus       484 ~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  484 PGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             CcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence                 2356788899999 999999999999999999999999999999999999999999999999999999999876

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=1.1e-14  Score=157.04  Aligned_cols=251  Identities=12%  Similarity=0.064  Sum_probs=175.0

Q ss_pred             eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCE--EEEEECCCcEEEEecC
Q 005342          395 SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF--LVALTQTATHKLWKWQ  471 (701)
Q Consensus       395 V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~--l~s~s~dg~i~vwd~~  471 (701)
                      |.++.|+|. ..+++.|..+|.|.+||+......- ...+......|..+|+.+.|..+-.-  +++++.||.|..|+++
T Consensus       245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~  323 (555)
T KOG1587|consen  245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTD  323 (555)
T ss_pred             eeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecc
Confidence            889999995 5677788899999999997422210 11222333468999999999876544  9999999999999774


Q ss_pred             CCCcc-ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc--------EE
Q 005342          472 SNKQS-LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------TL  538 (701)
Q Consensus       472 ~~~~~-~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~--------~~  538 (701)
                      .-..+ .+.....      ....+.      .......+++++|.   ...+++|+ +|.|.--+....+        ..
T Consensus       324 ~l~~P~e~~~~~~------~~~~~~------~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~  391 (555)
T KOG1587|consen  324 MLSLPVEGLLLES------KKHKGQ------QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH  391 (555)
T ss_pred             ccccchhhccccc------cccccc------ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence            43221 1111000      000000      00223467788887   66788888 7988774433221        12


Q ss_pred             EEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCC-CCceEEeecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEE
Q 005342          539 ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWD  614 (701)
Q Consensus       539 ~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~-~~~~~~~l~~h~~~V~~v~~spdg~-~l~s~s~D~~I~vwd  614 (701)
                      ..+..|.++|+++.++|=+  .+++++ |.+++||... ...++..+..+...|++++|||... .++++..||.|.+||
T Consensus       392 ~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD  470 (555)
T KOG1587|consen  392 STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD  470 (555)
T ss_pred             ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence            3556678999999999999  444444 9999999987 6667777777888899999999654 788889999999999


Q ss_pred             CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                      +.....   .+..+...+ .   ...+.+.|+++|+.|++| ..|++.+|++.
T Consensus       471 Ll~~~~---~Pv~s~~~~-~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  471 LLQDDE---EPVLSQKVC-S---PALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             hhcccc---CCccccccc-c---cccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            987532   222212222 2   667889999999999999 68999999995

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=5.8e-15  Score=139.62  Aligned_cols=264  Identities=13%  Similarity=0.113  Sum_probs=180.3

Q ss_pred             eEEEEEc--CC-CCeEEEEcC----CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-----EEEEEECC
Q 005342          395 SRESTSL--PD-ADSAVCAKS----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-----FLVALTQT  462 (701)
Q Consensus       395 V~~l~~s--pd-g~~l~s~s~----d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-----~l~s~s~d  462 (701)
                      +.++.|+  |+ +.+||.|+-    .+.|.|-.+.+  ++++...-  +.-.|.-+++.+.|.|+..     .|+++  +
T Consensus        47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~--~s~e~~~~--a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~  120 (364)
T KOG0290|consen   47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDE--DSGELVED--ANFDHPYPVTKLMWIPDSKGVYPDLLATS--S  120 (364)
T ss_pred             eeeeccccCCCcceeEEEeeeccccCCeeEEEEEcc--CCCceecc--CCCCCCCCccceEecCCccccCcchhhcc--c
Confidence            6677887  33 347787763    35677776652  23333221  1125788999999999874     34443  3


Q ss_pred             CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc--
Q 005342          463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--  536 (701)
Q Consensus       463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~--  536 (701)
                      ..+++|.+...+.              ...-..++.+.-...+..+++++.|+   .+++.+.+ |-+..|||++++.  
T Consensus       121 D~LRlWri~~ee~--------------~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~  186 (364)
T KOG0290|consen  121 DFLRLWRIGDEES--------------RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG  186 (364)
T ss_pred             CeEEEEeccCcCC--------------ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc
Confidence            4799997743211              00000011111113567899999999   77888888 9999999999873  


Q ss_pred             -EEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEee-c--CCCCCeEEEEEec-CCCEEEEEeCC-C
Q 005342          537 -TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL-K--GHQNRITCLAYSL-SLNVLVSSGAD-A  608 (701)
Q Consensus       537 -~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l-~--~h~~~V~~v~~sp-dg~~l~s~s~D-~  608 (701)
                       ....+..|...|..++|..++  .+|+.+.||.+++||++..+.-..+ +  ....+...++|++ |-+++|+-..| .
T Consensus       187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~  266 (364)
T KOG0290|consen  187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN  266 (364)
T ss_pred             ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence             345566799999999999988  9999999999999999976433222 2  2245788999998 66788876554 5


Q ss_pred             eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEE-EecCeEEEEECCCCce------ee--eeee-e
Q 005342          609 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNH------TS--QVLL-I  677 (701)
Q Consensus       609 ~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~s-g~Dg~I~iwd~~~g~~------~~--~l~~-i  677 (701)
                      .|.|-|++.-.    .++.++. +|.   +.|++++|.|.. .+|++ |+|..+-|||+.+.-.      +-  +..+ |
T Consensus       267 ~V~iLDiR~P~----tpva~L~-~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EV  338 (364)
T KOG0290|consen  267 KVVILDIRVPC----TPVARLR-NHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEV  338 (364)
T ss_pred             eEEEEEecCCC----cceehhh-cCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhcccee
Confidence            79999999842    3344244 555   999999999974 66777 5899999999965322      11  1112 9


Q ss_pred             eEEEEEeeE
Q 005342          678 SHIMFVQIV  686 (701)
Q Consensus       678 ~~~~fs~~~  686 (701)
                      +.+.|++..
T Consensus       339 Nqi~Ws~~~  347 (364)
T KOG0290|consen  339 NQIQWSSSQ  347 (364)
T ss_pred             eeeeecccC
Confidence            999998553

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.67  E-value=2.7e-15  Score=152.35  Aligned_cols=204  Identities=15%  Similarity=0.172  Sum_probs=157.6

Q ss_pred             CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccc
Q 005342          404 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN  483 (701)
Q Consensus       404 g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~  483 (701)
                      ...++.++.||.+.+-+-.     ++...   ....|.+.+.+-.|+|||.-|++++.||.|++|.              
T Consensus        75 ~d~~~i~s~DGkf~il~k~-----~rVE~---sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS--------------  132 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS-----ARVER---SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS--------------  132 (737)
T ss_pred             cceEEEEcCCceEEEeccc-----chhhh---hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe--------------
Confidence            3578888999999887753     33333   3346899999999999999999999999999994              


Q ss_pred             eeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEE
Q 005342          484 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA  560 (701)
Q Consensus       484 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~  560 (701)
                              .+|.+-+. + .....+|.|++|.  .+.++.+..+.+.+=.+.....+-....|.+-|.++.|++.+ .|+
T Consensus       133 --------rsGMLRSt-l-~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~  202 (737)
T KOG1524|consen  133 --------RSGMLRST-V-VQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIA  202 (737)
T ss_pred             --------ccchHHHH-H-hhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCcccccee
Confidence                    33332221 1 2356789999998  566666667788888887777777788899999999999999 999


Q ss_pred             EEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342          561 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV  640 (701)
Q Consensus       561 ~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v  640 (701)
                      +|++|-..++||. .|..+..-..|.-+|++++|+|+ ..++.+|. ++.++   .              ....   +.|
T Consensus       203 sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~--------------~p~~---GSi  259 (737)
T KOG1524|consen  203 SGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---S--------------SPRV---GSI  259 (737)
T ss_pred             ecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeee-eeeee---c--------------CCCc---cce
Confidence            9999999999995 56677766779999999999999 55665664 23331   1              1122   789


Q ss_pred             EEEEEcCCCCEEEEE-ecCeEEE
Q 005342          641 NHIQFHPDQIHLLSI-HEGQIDV  662 (701)
Q Consensus       641 ~~v~~spdg~~l~sg-~Dg~I~i  662 (701)
                      ..++|||||..+++| ..|.+.+
T Consensus       260 fnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  260 FNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             EEEEEcCCCceeeccccCceEEE
Confidence            999999999999987 6666543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=9.5e-15  Score=159.21  Aligned_cols=260  Identities=15%  Similarity=0.111  Sum_probs=175.7

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEec--CCCEEEEEECCCcEEEEecC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQ  471 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~sp--dg~~l~s~s~dg~i~vwd~~  471 (701)
                      -..+.|+|-...++++.....|++||.+    .+++.. +.. .......|+.+.+-.  |...+++|+.||.|+||+--
T Consensus      1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e----~~~~l~~F~n-~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWE----KGRLLNGFDN-GAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             CceeeecCCCceeEEcCCcceEEEEecc----cCceeccccC-CCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            5668899999999999988999999998    444332 111 112356788888865  44588999999999999631


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC-CCC
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-PPI  547 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~-~~~  547 (701)
                      ......-+.     +..|..-++...      +..+.-.-+.|.  ..+|++++ -..|+|||......++.+... ...
T Consensus      1142 ~~~~~~~eL-----VTaw~~Ls~~~~------~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1142 ADKWKKPEL-----VTAWSSLSDQLP------GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL 1210 (1387)
T ss_pred             ccccCCcee-----EEeeccccccCc------cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcc
Confidence            110000000     122332222221      111211345565  44555555 689999999888777776533 445


Q ss_pred             eEEEEEcCC-C-eEEEEeCCCcEEEEeCCCC---ceEEeecCCCCC--eEEEEEecCCC-EEEEEeCCCeEEEEECCCCe
Q 005342          548 ATYFILLPQ-D-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNR--ITCLAYSLSLN-VLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       548 i~~l~~spd-g-~l~~gs~dg~I~iwd~~~~---~~~~~l~~h~~~--V~~v~~spdg~-~l~s~s~D~~I~vwd~~~g~  619 (701)
                      ++++.-+-. | .|++|..||.|++||.+..   ..+..++.|+..  |..+.+.+.|- -|++||.||.|++||+++..
T Consensus      1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred             ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence            666655543 4 9999999999999998864   357778889887  99999998765 49999999999999999842


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      ...  .+. +..+.. .++..+++..+++...+|+|.-+.|+||++ .|+.+..+.
T Consensus      1291 ~e~--~~~-iv~~~~-yGs~lTal~VH~hapiiAsGs~q~ikIy~~-~G~~l~~~k 1341 (1387)
T KOG1517|consen 1291 KET--FLT-IVAHWE-YGSALTALTVHEHAPIIASGSAQLIKIYSL-SGEQLNIIK 1341 (1387)
T ss_pred             ccc--cce-eeeccc-cCccceeeeeccCCCeeeecCcceEEEEec-Chhhhcccc
Confidence            221  222 222211 114589999999999999986699999998 555554443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.67  E-value=4.3e-15  Score=140.29  Aligned_cols=198  Identities=13%  Similarity=0.168  Sum_probs=151.3

Q ss_pred             ceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCC-CCCCCCEEEEEEec--CCCEEEEEECCCcEEEEec
Q 005342          394 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKW  470 (701)
Q Consensus       394 ~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-~~~~~~v~~l~~sp--dg~~l~s~s~dg~i~vwd~  470 (701)
                      .|.|+.|.|++..+++-. |..|.+|++.+....  ...+..+. ..+....++-+|+|  ||+.+++ ..|+++..||+
T Consensus       125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~--vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~  200 (370)
T KOG1007|consen  125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI--VAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDL  200 (370)
T ss_pred             ceeeEEEcCCCCeeEEec-cCceEEEEcccCcch--heeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEc
Confidence            499999999999999887 689999999853331  11212121 23466778889998  7776555 66899999977


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCC-cEEEEecCCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-QTLATFANPP  545 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~  545 (701)
                      ++.                     ...- .+...|...|.++.|+   ..+|++|+ ||.|++||.+.. .++..+.+|.
T Consensus       201 RT~---------------------~~~~-sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs  258 (370)
T KOG1007|consen  201 RTM---------------------KKNN-SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHS  258 (370)
T ss_pred             cch---------------------hhhc-chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCc
Confidence            432                     2110 1445788899999999   55788888 899999998764 4788999999


Q ss_pred             CCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-----------------------------ceEEeecCCCCCeEEEEE
Q 005342          546 PIATYFILLPQD--LFAFGFDDSSILVHCPCTK-----------------------------KTKAKLKGHQNRITCLAY  594 (701)
Q Consensus       546 ~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-----------------------------~~~~~l~~h~~~V~~v~~  594 (701)
                      ..+.++.|+|..  +|++|+.|..|.+|...+-                             ..+.++..|...|.+++|
T Consensus       259 HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW  338 (370)
T KOG1007|consen  259 HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW  338 (370)
T ss_pred             eEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEee
Confidence            999999999988  9999999999999975321                             124467779999999999


Q ss_pred             ecC-CCEEEEEeCCCeEEEEECCC
Q 005342          595 SLS-LNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       595 spd-g~~l~s~s~D~~I~vwd~~~  617 (701)
                      |.- .-.+|+-|.||++.|=.+..
T Consensus       339 SsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  339 SSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccCCCeeEEEeccCceEEeecCCh
Confidence            984 44678999999999877665

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.66  E-value=1.9e-15  Score=141.09  Aligned_cols=259  Identities=13%  Similarity=0.075  Sum_probs=177.3

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .|++|.. |+++.|-.+++ |.+|..-|.|++|++.    +.+-.. .+ ...+...|+.+.-.|++ .+.+-+.|+.+.
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lq----t~r~~~-~~-r~~g~~~it~lq~~p~d-~l~tqgRd~~L~   80 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQ----TERDLP-LI-RLFGRLFITNLQSIPND-SLDTQGRDPLLI   80 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEee----cCccch-hh-hhhccceeeceeecCCc-chhhcCCCceEE
Confidence            3678888 99999988866 8899999999999998    332111 01 11367789999988884 478889999999


Q ss_pred             EEecCCCCc-------------------cccccccceeeEEeeCC---------CCe----EEeecccCCCCCCeEEEEe
Q 005342          467 LWKWQSNKQ-------------------SLEEENVNMESQLYQPS---------SKL----VMTNDIAADPKDSISCFAL  514 (701)
Q Consensus       467 vwd~~~~~~-------------------~~g~~~~~~~i~~~d~~---------~~~----~~~~~~~~~~~~~v~~l~~  514 (701)
                      +|++.....                   ..++...  ....|+.+         .+.    .+..+-..+..+.+.|..+
T Consensus        81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~e--qll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSE--QLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEEccCcceEEEeeeeccccccccceeccCCCcch--hheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            999866332                   0000000  00011100         010    1111111134566777776


Q ss_pred             c---CC-EEE-EEe-CCeEEEEeCCCCc----------EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-
Q 005342          515 R---GS-HLF-SAS-GGKISIFSLETFQ----------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-  576 (701)
Q Consensus       515 s---~~-~l~-s~s-dg~I~iwd~~~~~----------~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-  576 (701)
                      .   +. .++ +|. +|.+.+||+.++.          ....+..|..++.++.+.+.- .=++|+.+..+..|++... 
T Consensus       159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST  238 (323)
T ss_pred             cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence            6   44 344 444 7999999999873          333445678899999998755 5577777788888887643 


Q ss_pred             -ce--EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342          577 -KT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  653 (701)
Q Consensus       577 -~~--~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~  653 (701)
                       .+  .....-.+-.|..+..-||++.+||++.|++||||+.++.+     ++. +..-|.   ..|++++|+|+...+|
T Consensus       239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-----pLA-VLkyHs---agvn~vAfspd~~lmA  309 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-----PLA-VLKYHS---AGVNAVAFSPDCELMA  309 (323)
T ss_pred             CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-----chh-hhhhhh---cceeEEEeCCCCchhh
Confidence             22  11122223468899999999999999999999999999964     444 444666   8999999999988888


Q ss_pred             E-EecCeEEEEEC
Q 005342          654 S-IHEGQIDVYEA  665 (701)
Q Consensus       654 s-g~Dg~I~iwd~  665 (701)
                      + |.|++|.+|++
T Consensus       310 aaskD~rISLWkL  322 (323)
T KOG0322|consen  310 AASKDARISLWKL  322 (323)
T ss_pred             hccCCceEEeeec
Confidence            8 58999999986

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.65  E-value=2.2e-15  Score=155.62  Aligned_cols=241  Identities=17%  Similarity=0.165  Sum_probs=168.4

Q ss_pred             EcCCCCeEEE--EcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcEEEEecCCCCcc
Q 005342          400 SLPDADSAVC--AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQS  476 (701)
Q Consensus       400 ~spdg~~l~s--~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~  476 (701)
                      |..+..++|.  ++..|.|-|+++++   .|+...-.++.-.....|+.+.|.| |...|++++.||.|++|.+..+..+
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~---PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~  663 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNE---PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP  663 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCC---CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC
Confidence            3334444443  45568999999975   4543221222223467899999999 6778999999999999988654321


Q ss_pred             ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342          477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI  552 (701)
Q Consensus       477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~  552 (701)
                      ..            ..+-.-    +...|...|+++.|+   .+.|++++ |.+|++||+.+++....+.+|...|..++
T Consensus       664 e~------------~~tPe~----~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~A  727 (1012)
T KOG1445|consen  664 EN------------EMTPEK----ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIA  727 (1012)
T ss_pred             cc------------cCCcce----eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEE
Confidence            00            001111    114789999999999   88899998 99999999999999999999999999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEeCCCCc-eEEeecCCC-CCeEEEEEecCCCEEEEEeCCC----eEEEEECCCCe--eeee
Q 005342          553 LLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQ-NRITCLAYSLSLNVLVSSGADA----QLCVWDAVGWK--KLCS  623 (701)
Q Consensus       553 ~spdg-~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~-~~V~~v~~spdg~~l~s~s~D~----~I~vwd~~~g~--~~~~  623 (701)
                      ||||| .+|+.+.||+|++|+.++++ .++.=.|.. ..--.+.|--||+++++.+.|.    .|.+||..+-.  .+..
T Consensus       728 WSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t  807 (1012)
T KOG1445|consen  728 WSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYT  807 (1012)
T ss_pred             ECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCccee
Confidence            99999 99999999999999988764 344333311 2345688989999988877664    68888877621  1222


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEE-EEE-ecCeEEEEECCC
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHL-LSI-HEGQIDVYEAPT  667 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l-~sg-~Dg~I~iwd~~~  667 (701)
                      ..+.   ..     ..+.--.+.+|...+ ++| .|..|..|.+-.
T Consensus       808 ~~lD---va-----ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  808 QVLD---VA-----PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             eeec---cc-----CccccccccCCCceEEEecCCCceEEEEEecC
Confidence            2222   11     112223456676555 457 799999998843

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.6e-14  Score=156.82  Aligned_cols=213  Identities=10%  Similarity=0.042  Sum_probs=143.7

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcE
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATH  465 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i  465 (701)
                      .|.. +.+++|||||+.|+.++.+   ..|++||+.    +++...+. ..   .+....++|+|||+.|+.++ .+|.+
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~----tg~~~~l~-~~---~g~~~~~~wSPDG~~La~~~~~~g~~  272 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLR----SGARKVVA-SF---RGHNGAPAFSPDGSRLAFASSKDGVL  272 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCC----CCceEEEe-cC---CCccCceeECCCCCEEEEEEecCCcE
Confidence            4445 7889999999999987654   469999997    55443433 12   22344689999999988875 58888


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCC-cEEEE
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETF-QTLAT  540 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~-~~~~~  540 (701)
                      .+|.+                   |..++....  + ..+...+.+.+|+  |+.|+.++  +|...+|++... .....
T Consensus       273 ~Iy~~-------------------d~~~~~~~~--l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~  330 (429)
T PRK01742        273 NIYVM-------------------GANGGTPSQ--L-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL  330 (429)
T ss_pred             EEEEE-------------------ECCCCCeEe--e-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence            88744                   655555432  2 2355567788999  77777665  577777775432 22233


Q ss_pred             ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC--C
Q 005342          541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV--G  617 (701)
Q Consensus       541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~--~  617 (701)
                      + .+..  .+..|+||| .|+.++.++ +.+||+.+++.......+  ...++.|+|||++|++++.++.+.+|++.  +
T Consensus       331 l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~  404 (429)
T PRK01742        331 V-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD  404 (429)
T ss_pred             e-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            3 2333  467899999 887777654 666999988765432222  23567899999999999999988888763  3


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd  648 (701)
                      |.     ....+. +|.   +.+..++|||-
T Consensus       405 G~-----~~~~l~-~~~---g~~~~p~wsp~  426 (429)
T PRK01742        405 GR-----FKARLP-GSD---GQVKFPAWSPY  426 (429)
T ss_pred             CC-----ceEEcc-CCC---CCCCCcccCCC
Confidence            42     122232 343   67888999985

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.64  E-value=6.6e-16  Score=164.22  Aligned_cols=277  Identities=13%  Similarity=0.174  Sum_probs=202.8

Q ss_pred             eEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342          320 LSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN  392 (701)
Q Consensus       320 ~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h  392 (701)
                      ++.|.+|.+.|.  |+.|--.       ++|.-++||..+++.|+..          .                   .||
T Consensus       183 ikrLlgH~naVy--ca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs----------~-------------------rGh  231 (1113)
T KOG0644|consen  183 IKRLLGHRNAVY--CAIFDRTGRYIITGSDDRLVKIWSMETARCLAS----------C-------------------RGH  231 (1113)
T ss_pred             HHHHHhhhhhee--eeeeccccceEeecCccceeeeeeccchhhhcc----------C-------------------CCC
Confidence            345678999999  9999766       8999999999999988877          2                   477


Q ss_pred             Cc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342          393 NQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ  471 (701)
Q Consensus       393 ~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  471 (701)
                      .+ |+.++.+.+..++++++.|..|++|.+.    .+....   ...+|++.|++++|+|-.    +.+.||++++||.+
T Consensus       232 s~ditdlavs~~n~~iaaaS~D~vIrvWrl~----~~~pvs---vLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  232 SGDITDLAVSSNNTMIAAASNDKVIRVWRLP----DGAPVS---VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             ccccchhccchhhhhhhhcccCceEEEEecC----CCchHH---HHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            77 8999999999999999999999999997    443333   234799999999999964    67889999999874


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA  548 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i  548 (701)
                      -.            ++.|-+..       +......-+.++-+-  +..+++++ |+.-..|.+..-.      .+...+
T Consensus       301 ~~------------~~~y~prp-------~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~l  355 (1113)
T KOG0644|consen  301 LE------------PRIYVPRP-------LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------WRSNLL  355 (1113)
T ss_pred             cc------------ccccCCCC-------CCcccccceeeeeccccccccccccCCcccccchhhHhh------hhccce
Confidence            11            11111110       101112334344444  67788888 8887777664211      111122


Q ss_pred             EEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342          549 TYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKF  625 (701)
Q Consensus       549 ~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~~~~~~  625 (701)
                      .-+..+.|.  ..+++-.+..+.+|++.+|...+.+.+|...+..+.++|- .....+++.||.+.|||+-.|.++....
T Consensus       356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence            222222233  6777778889999999999999999999999999999994 4555689999999999999986543222


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~  672 (701)
                           .+|    +.+..-.||+||..++.+ +-|.++|.....++..+
T Consensus       436 -----~gh----~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k  474 (1113)
T KOG0644|consen  436 -----IGH----GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQK  474 (1113)
T ss_pred             -----ccc----ceeeccccCCCCceEecCCCCCceEEeccCCCcccc
Confidence                 255    778888999999999987 67889998876665443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.64  E-value=1.2e-14  Score=135.71  Aligned_cols=253  Identities=16%  Similarity=0.157  Sum_probs=169.4

Q ss_pred             ceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccC
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFND  391 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~  391 (701)
                      .....|++|.+.|.  ++.|-.+      ..-|.+++|++++......          +.++                  
T Consensus         5 dP~fvLRp~~~~v~--s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~----------~r~~------------------   54 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVT--SVLFQANERLMSGLSVGIVKMWVLQTERDLPL----------IRLF------------------   54 (323)
T ss_pred             CCeeEeccccchhe--ehhhccchhhhcccccceEEEEEeecCccchh----------hhhh------------------
Confidence            34556789999999  8888877      6679999999998876555          2221                  


Q ss_pred             CCc-eEEEEEcCCCCeEEEEcCCCcEEEEecccc---------------------C----------------------CC
Q 005342          392 NNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLI---------------------N----------------------EP  427 (701)
Q Consensus       392 h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~---------------------~----------------------~~  427 (701)
                      |.. |..+.--|+ ..+.+-+.|+.+.+|++...                     +                      +.
T Consensus        55 g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~  133 (323)
T KOG0322|consen   55 GRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG  133 (323)
T ss_pred             ccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence            222 555666665 45566666677777766520                     0                      00


Q ss_pred             CceeEeecCC---CCCCCCEEEEEEec-CCC--EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC-CCeEEeec
Q 005342          428 SECRTLLLPD---NSFGGRVVRLIYSH-SGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS-SKLVMTND  500 (701)
Q Consensus       428 ~~~~~l~~~~---~~~~~~v~~l~~sp-dg~--~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~-~~~~~~~~  500 (701)
                      +....+..+.   ....+.+.|..+.. ++.  .+++|..+|.+.+||+.++..            +.+.. ....... 
T Consensus       134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~------------~~~~~~~~kv~~~-  200 (323)
T KOG0322|consen  134 GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK------------IIQLPQSSKVESP-  200 (323)
T ss_pred             CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce------------eeccccccccccc-
Confidence            0000001000   12335566666433 233  456677799999998855421            00111 1111111 


Q ss_pred             ccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC--CcE--EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 005342          501 IAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET--FQT--LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC  572 (701)
Q Consensus       501 ~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~--~~~--~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd  572 (701)
                      . ..|..+|.++.+.  -+.=++|+ +..+..|+++.  +.+  .....-....+..+.+-||+ .+|+++.|+.|++|+
T Consensus       201 ~-ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVys  279 (323)
T KOG0322|consen  201 N-ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYS  279 (323)
T ss_pred             h-hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEE
Confidence            1 3688899999887  22335566 77788888753  322  12222235578899999999 999999999999999


Q ss_pred             CCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342          573 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       573 ~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~  615 (701)
                      .++..++..++.|...|++++|+|+...+|++|.|++|.+|++
T Consensus       280 wrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  280 WRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999999999999999999999986

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.63  E-value=4.3e-14  Score=152.56  Aligned_cols=269  Identities=12%  Similarity=0.057  Sum_probs=187.0

Q ss_pred             cccccccCcc-ceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342          308 KLKFPSMDKS-RLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS  378 (701)
Q Consensus       308 ~i~iwd~~~~-~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  378 (701)
                      .+.+|++.+. .....+. ....|.  |+.|+|.        ..+|.|.+||+..+...-..        .+..      
T Consensus       223 ~~~vW~~~~p~~Pe~~~~-~~s~v~--~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s--------~ls~------  285 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVLE-SPSEVT--CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS--------GLSA------  285 (555)
T ss_pred             eEEEEecCCCCCceEEEe-cCCcee--EEEeccCCcceEEeeccCceEEEEEccCCCCCCCc--------cccc------
Confidence            5789998776 3333333 345577  9999987        78999999999877652110        0000      


Q ss_pred             cCCCCCCCccccCCCc-eEEEEEcCCC--CeEEEEcCCCcEEEEeccccCCCCceeEeecCC-----CCCCCCEEEEEEe
Q 005342          379 SGDDSNDSSCFNDNNQ-SRESTSLPDA--DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-----NSFGGRVVRLIYS  450 (701)
Q Consensus       379 ~~D~~~~~~~l~~h~~-V~~l~~spdg--~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-----~~~~~~v~~l~~s  450 (701)
                               ....|.. ++.+.|..+-  .-+++++.||.|..|+++....+.+........     ......++++.|.
T Consensus       286 ---------~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~  356 (555)
T KOG1587|consen  286 ---------LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFE  356 (555)
T ss_pred             ---------ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeec
Confidence                     1236777 9999997654  449999999999999987543322211111000     1234578999998


Q ss_pred             cC-CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEeCCe
Q 005342          451 HS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGK  526 (701)
Q Consensus       451 pd-g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~sdg~  526 (701)
                      +. -..+++|+.+|.|..-+.........        .++     +...  ....|.++|.++.++   ...+.+++|.+
T Consensus       357 ~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--------~~~-----~~~~--~~~~h~g~v~~v~~nPF~~k~fls~gDW~  421 (555)
T KOG1587|consen  357 PTDPNHFIVGTEEGKVYKGCRKGYTPAPE--------VSY-----KGHS--TFITHIGPVYAVSRNPFYPKNFLSVGDWT  421 (555)
T ss_pred             cCCCceEEEEcCCcEEEEEeccCCccccc--------ccc-----cccc--cccccCcceEeeecCCCccceeeeeccce
Confidence            74 45788999999998743322110000        000     0010  113578899999999   55666666999


Q ss_pred             EEEEeCC-CCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC--ceEEeecCCCCCeEEEEEecCCCEE
Q 005342          527 ISIFSLE-TFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLSLNVL  601 (701)
Q Consensus       527 I~iwd~~-~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~v~~spdg~~l  601 (701)
                      +++|... ...++..+..+...+++++|||..  .++++..||.|.+||+...  .++.+..-+....+.+.|++.|+.|
T Consensus       422 vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~l  501 (555)
T KOG1587|consen  422 VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLL  501 (555)
T ss_pred             eEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEE
Confidence            9999987 566676777677779999999998  9999999999999998754  3444444456677888999999999


Q ss_pred             EEEeCCCeEEEEECCC
Q 005342          602 VSSGADAQLCVWDAVG  617 (701)
Q Consensus       602 ~s~s~D~~I~vwd~~~  617 (701)
                      +.|...|++.+|++..
T Consensus       502 avGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  502 AVGDANGTTHILKLSE  517 (555)
T ss_pred             EEecCCCcEEEEEcCc
Confidence            9999999999999975

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=5.4e-15  Score=147.17  Aligned_cols=194  Identities=14%  Similarity=0.162  Sum_probs=141.7

Q ss_pred             EEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342          396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  475 (701)
                      ..++|+++|..+++|+.||.+++|++.+...    .   +....|...|.++.|||||+.|++.+.| ..+||+.+++  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t----~---l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g--  217 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT----I---LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG--  217 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh----h---hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC--
Confidence            5789999999999999999999999752111    1   1233578999999999999999999999 9999977443  


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CC-----EEEEEe--CCeEEEEeCCCCc-----EEEEec
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS-----HLFSAS--GGKISIFSLETFQ-----TLATFA  542 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~-----~l~s~s--dg~I~iwd~~~~~-----~~~~~~  542 (701)
                                         ..+...-+.........+.|+ ..     ++++..  .+.|+.||+...+     ..++..
T Consensus       218 -------------------~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~  278 (398)
T KOG0771|consen  218 -------------------AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI  278 (398)
T ss_pred             -------------------chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh
Confidence                               222110001222334455566 22     333332  3667776654322     112222


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      .....|+++++++|| ++|.|+.||.|-|++..+.+.++..+ .|...|+.+.|+||.+++++.+.|.++.|..+.-.
T Consensus       279 ~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  279 KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            234579999999999 99999999999999999888777655 49999999999999999999999999999877653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.62  E-value=2.9e-14  Score=136.86  Aligned_cols=231  Identities=12%  Similarity=0.063  Sum_probs=172.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |.+.+|++|++.+|.+.....|.|+...    ..+.+.....+..|...|+++.|+|.++.|++|+.|..-++|...   
T Consensus        13 itchAwn~drt~iAv~~~~~evhiy~~~----~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~---   85 (361)
T KOG1523|consen   13 ITCHAWNSDRTQIAVSPNNHEVHIYSML----GADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP---   85 (361)
T ss_pred             eeeeeecCCCceEEeccCCceEEEEEec----CCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC---
Confidence            8899999999999999999999999987    454344333456789999999999999999999999999999541   


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE----EEEecCCCCC
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT----LATFANPPPI  547 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~----~~~~~~~~~~  547 (701)
                                       +.+.-......-.+....+++.|+  ++.+++|+ ...|.||-++....    .+.-..+.+.
T Consensus        86 -----------------~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt  148 (361)
T KOG1523|consen   86 -----------------SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST  148 (361)
T ss_pred             -----------------CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence                             222211110112477899999999  88899999 78899998854331    1222346788


Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEEeCC-----C-------------CceEEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 005342          548 ATYFILLPQD-LFAFGFDDSSILVHCPC-----T-------------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA  608 (701)
Q Consensus       548 i~~l~~spdg-~l~~gs~dg~I~iwd~~-----~-------------~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~  608 (701)
                      |+++.|+|++ ++++|+.|+..+++..-     +             |+++.++....+.|..+.|+|+|+.|+-.+.|+
T Consensus       149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds  228 (361)
T KOG1523|consen  149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS  228 (361)
T ss_pred             eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC
Confidence            9999999999 99999999999998631     1             334555545567899999999999999999999


Q ss_pred             eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEec
Q 005342          609 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE  657 (701)
Q Consensus       609 ~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~D  657 (701)
                      ++.+-|......    ....+...+    -+..++.|-.+...+++|.|
T Consensus       229 ~v~~~da~~p~~----~v~~~~~~~----lP~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  229 TVSFVDAAGPSE----RVQSVATAQ----LPLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             ceEEeecCCCch----hccchhhcc----CCceeeEeecCCceeecCCC
Confidence            999999887531    122122233    55677777766666665655

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.61  E-value=5.5e-14  Score=138.26  Aligned_cols=229  Identities=12%  Similarity=0.181  Sum_probs=164.8

Q ss_pred             ccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcE
Q 005342          389 FNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i  465 (701)
                      +.||.. |-.++|.| +...+|+||.|.+|.||.+.+...+.....-...+.+|..+|.-++|+|.. +.|++++.|.+|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            558999 99999999 567899999999999999974322211111011235799999999999975 477899999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      .+||+                     .+|..+.. +  .|...|.+++|+  |+++++++ |..|+|||.++++.+..-.
T Consensus       157 ~iWnv---------------------~tgeali~-l--~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~  212 (472)
T KOG0303|consen  157 SIWNV---------------------GTGEALIT-L--DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV  212 (472)
T ss_pred             EEEec---------------------cCCceeee-c--CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence            99965                     56663322 3  499999999999  99999999 9999999999999998877


Q ss_pred             CCCC-CeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCc---eEEeecCCCCCeEEEEEecCCCEEEE-EeCCCeEEEE
Q 005342          543 NPPP-IATYFILLPQD-LFAFGF---DDSSILVHCPCTKK---TKAKLKGHQNRITCLAYSLSLNVLVS-SGADAQLCVW  613 (701)
Q Consensus       543 ~~~~-~i~~l~~spdg-~l~~gs---~dg~I~iwd~~~~~---~~~~l~~h~~~V~~v~~spdg~~l~s-~s~D~~I~vw  613 (701)
                      +|.+ .-..+.|-.+| .+-+|.   .+..+-+||..+-+   ...++.. .+.|.---|.||.++++. |-.|+.|+-|
T Consensus       213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYy  291 (472)
T KOG0303|consen  213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYF  291 (472)
T ss_pred             cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEE
Confidence            7744 34667788888 666654   45589999976543   2344543 345666678888887764 5569999999


Q ss_pred             ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342          614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd  648 (701)
                      .+....+. ...+.++..-     .+-..+.|-|.
T Consensus       292 Eit~d~P~-~hyln~f~S~-----epQRG~g~mPK  320 (472)
T KOG0303|consen  292 EITNEPPF-VHYLNTFSSK-----EPQRGMGFMPK  320 (472)
T ss_pred             EecCCCce-eEEecccccC-----Ccccccccccc
Confidence            99886432 2334323211     34455666664

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.61  E-value=8e-13  Score=139.02  Aligned_cols=230  Identities=13%  Similarity=0.133  Sum_probs=147.5

Q ss_pred             EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceee
Q 005342          408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMES  486 (701)
Q Consensus       408 ~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i  486 (701)
                      ++...++.|.+|++.+   .+....+.. . ...+....++++|++++|++++. ++.|.+|++.               
T Consensus         6 ~~~~~~~~I~~~~~~~---~g~l~~~~~-~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~---------------   65 (330)
T PRK11028          6 IASPESQQIHVWNLNH---EGALTLLQV-V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA---------------   65 (330)
T ss_pred             EEcCCCCCEEEEEECC---CCceeeeeE-E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC---------------
Confidence            3446789999999962   233222221 1 12355778899999999877754 7889999762               


Q ss_pred             EEeeCCCCeEE-eecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCC-C---cEEEEecCCCCCeEEEEEcCCC
Q 005342          487 QLYQPSSKLVM-TNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-F---QTLATFANPPPIATYFILLPQD  557 (701)
Q Consensus       487 ~~~d~~~~~~~-~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~-~---~~~~~~~~~~~~i~~l~~spdg  557 (701)
                           .++.+. ....  ........++++  |+++++++  ++.|.+||+.+ +   +.+..+. +.....+++++|+|
T Consensus        66 -----~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g  137 (330)
T PRK11028         66 -----DDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN  137 (330)
T ss_pred             -----CCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC
Confidence                 222221 0101  122345678888  88888777  79999999964 2   2233333 23346778999999


Q ss_pred             -eE-EEEeCCCcEEEEeCCCCceEE-------eecCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCC--Ceeeeeee
Q 005342          558 -LF-AFGFDDSSILVHCPCTKKTKA-------KLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSKF  625 (701)
Q Consensus       558 -~l-~~gs~dg~I~iwd~~~~~~~~-------~l~~h~~~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~--g~~~~~~~  625 (701)
                       ++ ++...++.|.+||+.+...+.       .... ......++|+|+|++++++.. +++|.+|++..  ++......
T Consensus       138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~  216 (330)
T PRK11028        138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT  216 (330)
T ss_pred             CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence             55 566677999999997633221       1111 234678999999999987766 89999999974  33222222


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCC
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT  667 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~  667 (701)
                      +..++.... .......+.++|+|++++++  .++.|.+|++.+
T Consensus       217 ~~~~p~~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        217 LDMMPADFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             EecCCCcCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            321211111 01234468999999999986  478999999954

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.60  E-value=8.9e-13  Score=138.72  Aligned_cols=304  Identities=15%  Similarity=0.134  Sum_probs=189.6

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      ++|.+.|.++.+.+..+........  .+.|+||       +.|+.|.++|+.+++.+..+          +        
T Consensus        16 ~~v~viD~~t~~~~~~i~~~~~~h~--~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i----------~--------   75 (369)
T PF02239_consen   16 GSVAVIDGATNKVVARIPTGGAPHA--GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI----------K--------   75 (369)
T ss_dssp             TEEEEEETTT-SEEEEEE-STTEEE--EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE----------E--------
T ss_pred             CEEEEEECCCCeEEEEEcCCCCcee--EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE----------e--------
Confidence            8899999999999999987665444  5789998       77999999999999987773          1        


Q ss_pred             CCCCCCCccccCCCceEEEEEcCCCCeEEEEc-CCCcEEEEeccccCCCCcee-Eee---cCCCCCCCCEEEEEEecCCC
Q 005342          380 GDDSNDSSCFNDNNQSRESTSLPDADSAVCAK-SLEKSVNLKLQLINEPSECR-TLL---LPDNSFGGRVVRLIYSHSGD  454 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s-~d~~v~iw~~~~~~~~~~~~-~l~---~~~~~~~~~v~~l~~spdg~  454 (701)
                                 .......+++||||++++++. .++.+.++|..    +.+.. .+.   .+......++.++..+|...
T Consensus        76 -----------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~----tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~  140 (369)
T PF02239_consen   76 -----------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE----TLEPVKTIPTGGMPVDGPESRVAAIVASPGRP  140 (369)
T ss_dssp             ------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETT----T--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred             -----------cCCCcceEEEcCCCCEEEEEecCCCceeEeccc----cccceeecccccccccccCCCceeEEecCCCC
Confidence                       111256799999999998775 67999999987    33322 222   11222456788999999988


Q ss_pred             EEEEEECC-CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEE
Q 005342          455 FLVALTQT-ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISI  529 (701)
Q Consensus       455 ~l~s~s~d-g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~i  529 (701)
                      .++..-.| +.|.+.|....                    ..+....+  ..........|+  +++++.+.  ++.|.+
T Consensus       141 ~fVv~lkd~~~I~vVdy~d~--------------------~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~~sn~i~v  198 (369)
T PF02239_consen  141 EFVVNLKDTGEIWVVDYSDP--------------------KNLKVTTI--KVGRFPHDGGFDPDGRYFLVAANGSNKIAV  198 (369)
T ss_dssp             EEEEEETTTTEEEEEETTTS--------------------SCEEEEEE--E--TTEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred             EEEEEEccCCeEEEEEeccc--------------------cccceeee--cccccccccccCcccceeeecccccceeEE
Confidence            66666554 77766654221                    11111112  123456678888  78877765  689999


Q ss_pred             EeCCCCcEEEEecC----CCCCeEEE-------EEcC--CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe
Q 005342          530 FSLETFQTLATFAN----PPPIATYF-------ILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS  595 (701)
Q Consensus       530 wd~~~~~~~~~~~~----~~~~i~~l-------~~sp--dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s  595 (701)
                      +|.++++.+..+..    |..+...+       .|..  .+ ..++.-....+.+||..+.+.++++....++ .-+..+
T Consensus       199 iD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th  277 (369)
T PF02239_consen  199 IDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH  277 (369)
T ss_dssp             EETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--
T ss_pred             EeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC
Confidence            99999887766532    22222222       1221  22 2222233345667898999999999876666 777889


Q ss_pred             cCCCEEEEE----eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE---ecCeEEEEECCCC
Q 005342          596 LSLNVLVSS----GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTL  668 (701)
Q Consensus       596 pdg~~l~s~----s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg---~Dg~I~iwd~~~g  668 (701)
                      |+++++...    ...++|.++|.++.+     ...++..+..   ..+..+.|++||+.+..|   .++.|.|||..|.
T Consensus       278 P~s~~vwvd~~~~~~~~~v~viD~~tl~-----~~~~i~~~~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  278 PDSRYVWVDTFLNPDADTVQVIDKKTLK-----VVKTITPGPG---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             TT-SEEEEE-TT-SSHT-EEEEECCGTE-----EEE-HHHHHT-----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred             CCCccEEeeccCCCCCceEEEEECcCcc-----eeEEEeccCC---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence            999999887    456899999999953     2222322221   358999999999998875   3448999999999


Q ss_pred             ceeeeeee
Q 005342          669 NHTSQVLL  676 (701)
Q Consensus       669 ~~~~~l~~  676 (701)
                      +.++.++.
T Consensus       350 ~~~~~i~~  357 (369)
T PF02239_consen  350 KEKKRIPV  357 (369)
T ss_dssp             EEEEEEE-
T ss_pred             EEEEEEEe
Confidence            99998874

...

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.1e-14  Score=146.95  Aligned_cols=289  Identities=12%  Similarity=0.139  Sum_probs=206.9

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      ++...|..|.+.|.  .+.|+..       +.|..|.+||+.++.....          +.                  .
T Consensus       133 ~l~~kL~~H~GcVn--tV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~----------f~------------------S  182 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVN--TVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS----------FE------------------S  182 (559)
T ss_pred             hhhhcccCCCCccc--eeeecccCceeeccCccceEEeehhhccCcccc----------cc------------------c
Confidence            34456789999999  9999987       8999999999998876554          11                  2


Q ss_pred             CCCc-eEEEEEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEE
Q 005342          391 DNNQ-SRESTSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHK  466 (701)
Q Consensus       391 ~h~~-V~~l~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~  466 (701)
                      ||.. |....|-|.  .+.+++++.||.|++=.+..   ++.+...+ ....|.++|.-++.-|+.. -|.+++.|+.+.
T Consensus       183 GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~---t~~~e~t~-rl~~h~g~vhklav~p~sp~~f~S~geD~~v~  258 (559)
T KOG1334|consen  183 GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE---TGYVENTK-RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVF  258 (559)
T ss_pred             ccccchhhhhccCCCCCcCceeccccCceeeeeecc---ccceecce-ecccccCccceeeecCCCCCccccccccccee
Confidence            5666 777778774  56899999999999877653   44333212 2345889999999999765 578899999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCC---CeEEEEec---CCEEEEEe-CCeEEEEeCCCCc---
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR---GSHLFSAS-GGKISIFSLETFQ---  536 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~---  536 (701)
                      -.|+....                 ....++..   ..+..   ...+++..   -..+++++ |..+++||.+.-.   
T Consensus       259 ~~Dlr~~~-----------------pa~~~~cr---~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~  318 (559)
T KOG1334|consen  259 HIDLRQDV-----------------PAEKFVCR---EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE  318 (559)
T ss_pred             eeeeccCC-----------------ccceeeee---ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc
Confidence            88875532                 22222221   12222   45667776   44677877 9999999986432   


Q ss_pred             ---EEEEecC------CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC--C----------ceEE-eecCCCC--CeEE
Q 005342          537 ---TLATFAN------PPPIATYFILLPQD-LFAFGFDDSSILVHCPCT--K----------KTKA-KLKGHQN--RITC  591 (701)
Q Consensus       537 ---~~~~~~~------~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~--~----------~~~~-~l~~h~~--~V~~  591 (701)
                         .+.++..      ..-.|++++++.++ -++++..|-.|+++.-.-  |          ..++ .++||..  .|..
T Consensus       319 ~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKg  398 (559)
T KOG1334|consen  319 NNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKG  398 (559)
T ss_pred             ccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccce
Confidence               1233322      24468999999888 777778888999995432  2          2233 3889875  5666


Q ss_pred             EE-EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342          592 LA-YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN  669 (701)
Q Consensus       592 v~-~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~  669 (701)
                      +. |.|...|++|||+-|.|.||+-++++.+     . +..+..   ..|+|+.=+|--..||++ -|..|+||-..+-+
T Consensus       399 VNFfGPrsEyVvSGSDCGhIFiW~K~t~eii-----~-~MegDr---~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  399 VNFFGPRSEYVVSGSDCGHIFIWDKKTGEII-----R-FMEGDR---HVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             eeeccCccceEEecCccceEEEEecchhHHH-----H-Hhhccc---ceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            64 5688999999999999999999997533     2 333443   789999999999999985 79999999885444

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=8.6e-13  Score=126.89  Aligned_cols=234  Identities=14%  Similarity=0.249  Sum_probs=158.5

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE-EEECC------CcEEE
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQT------ATHKL  467 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~-s~s~d------g~i~v  467 (701)
                      ..+++|+.|..-++.|..+| .+||+.+-..+..+...     ....-.+..+-|-  .++++ +||.+      +.+.|
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~-----~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviI   79 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF-----IDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVII   79 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc-----ccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEE
Confidence            44689999998888887755 78999872221111000     0011122222222  23333 33322      45666


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCC-CCcEEEEecCC--
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLE-TFQTLATFANP--  544 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~-~~~~~~~~~~~--  544 (701)
                      ||                     -....++.. +  ....+|.++.++...|++.-.+.|.+|... +.+.++.+...  
T Consensus        80 WD---------------------D~k~~~i~e-l--~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~N  135 (346)
T KOG2111|consen   80 WD---------------------DLKERCIIE-L--SFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSN  135 (346)
T ss_pred             Ee---------------------cccCcEEEE-E--EeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccC
Confidence            64                     333333322 2  356789999999888888889999999987 45666666533  


Q ss_pred             CCCeEEEEEcCCC-eEEE-EeCCCcEEEEeCCCCce--EEeecCCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCe
Q 005342          545 PPIATYFILLPQD-LFAF-GFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWK  619 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~-gs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~-I~vwd~~~g~  619 (701)
                      +...++++-+.+. .||. |..-|.|+|-|+...+.  ...+..|.+.|.+++.+-+|.++||+|..|+ |||||..+|+
T Consensus       136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~  215 (346)
T KOG2111|consen  136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT  215 (346)
T ss_pred             CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence            2334444333333 4444 66778999999986654  4677889999999999999999999999997 7999999997


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      +++     ++..|-..  ..|.+++|||++.+||++ +-|+++|+.+..
T Consensus       216 ~l~-----E~RRG~d~--A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  216 LLQ-----ELRRGVDR--ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             Eee-----eeecCCch--heEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            543     23334332  789999999999999996 789999999865

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.1e-13  Score=147.30  Aligned_cols=260  Identities=19%  Similarity=0.203  Sum_probs=182.7

Q ss_pred             EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC---EEEEEECCCcEEEEecCCC
Q 005342          397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD---FLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~---~l~s~s~dg~i~vwd~~~~  473 (701)
                      ...||+|+++++.+.. ..|.||...    ++.|..   .+.+|..++..+.+.|...   ++++++.||.|++||+..+
T Consensus        21 ~avfSnD~k~l~~~~~-~~V~VyS~~----Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~   92 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCTG-NFVKVYSTA----TGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG   92 (792)
T ss_pred             ccccccCCcEEEEeeC-CEEEEEecc----hHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence            4568999999888776 689999998    787776   4567899999999988654   6779999999999999777


Q ss_pred             Cc-----ccccccc-ce---------eeEEe-------e---CCCC----e-EEee------cccCCCCCCeEEEEec--
Q 005342          474 KQ-----SLEEENV-NM---------ESQLY-------Q---PSSK----L-VMTN------DIAADPKDSISCFALR--  515 (701)
Q Consensus       474 ~~-----~~g~~~~-~~---------~i~~~-------d---~~~~----~-~~~~------~~~~~~~~~v~~l~~s--  515 (701)
                      ..     ..++..+ ..         ...+|       .   .+..    . .+.+      ++...+.. -.++..+  
T Consensus        93 ~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~  171 (792)
T KOG1963|consen   93 ELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNS  171 (792)
T ss_pred             EEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCC
Confidence            65     0010000 00         00011       0   0000    0 0000      01112222 2455565  


Q ss_pred             CCEEEEEeCCeEEEEeCCCCcEEEEe-----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC----CceEEeecCC
Q 005342          516 GSHLFSASGGKISIFSLETFQTLATF-----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT----KKTKAKLKGH  585 (701)
Q Consensus       516 ~~~l~s~sdg~I~iwd~~~~~~~~~~-----~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~----~~~~~~l~~h  585 (701)
                      |.+....-+..+.+|+..+.. ....     ..|.-.+++.++||.+ ++|+|..||.|.+|.--.    ....+.+.-|
T Consensus       172 ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH  250 (792)
T KOG1963|consen  172 GEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH  250 (792)
T ss_pred             ceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence            555555557889999987754 1111     1345568999999999 999999999999996322    1234456668


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       586 ~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                      ...|++++|+++|.+|.|||..|.+.+|.+.++++.....+.          ++|..+.+|||+...+.. .|+.|.+..
T Consensus       251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg----------s~I~~i~vS~ds~~~sl~~~DNqI~li~  320 (792)
T KOG1963|consen  251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLG----------SPILHIVVSPDSDLYSLVLEDNQIHLIK  320 (792)
T ss_pred             ccccceeEEecCCceEeecccceEEEEEeecCCCcccccccC----------CeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence            889999999999999999999999999999998754433333          899999999999988875 899999998


Q ss_pred             CCCCceeeeeee
Q 005342          665 APTLNHTSQVLL  676 (701)
Q Consensus       665 ~~~g~~~~~l~~  676 (701)
                      ..+.+...++.|
T Consensus       321 ~~dl~~k~tIsg  332 (792)
T KOG1963|consen  321 ASDLEIKSTISG  332 (792)
T ss_pred             ccchhhhhhccC
Confidence            877665555544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=7.5e-14  Score=151.65  Aligned_cols=225  Identities=13%  Similarity=0.030  Sum_probs=149.1

Q ss_pred             CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEEEecCCCCccccccccceeeEEe
Q 005342          413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLY  489 (701)
Q Consensus       413 d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~~~g~~~~~~~i~~~  489 (701)
                      +..|.+||..    ......+.    .+...+.+..|||||+.|+.++.+   ..|.+||+                   
T Consensus       183 ~~~i~i~d~d----g~~~~~lt----~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl-------------------  235 (429)
T PRK01742        183 PYEVRVADYD----GFNQFIVN----RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDL-------------------  235 (429)
T ss_pred             eEEEEEECCC----CCCceEec----cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeC-------------------
Confidence            4789999986    33323322    356789999999999999988754   35777755                   


Q ss_pred             eCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCe--EEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE
Q 005342          490 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGK--ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG  562 (701)
Q Consensus       490 d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~--I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~g  562 (701)
                        .++....  + ....+....++|+  |+.|+.+.  +|.  |++||+.++.. ..+..+...+...+|+||| .|+.+
T Consensus       236 --~tg~~~~--l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~  309 (429)
T PRK01742        236 --RSGARKV--V-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFT  309 (429)
T ss_pred             --CCCceEE--E-ecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEE
Confidence              4443211  1 0112223467898  78777764  665  45567766654 4555566678899999999 66654


Q ss_pred             e-CCCcEEEEeCCC-CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342          563 F-DDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV  640 (701)
Q Consensus       563 s-~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v  640 (701)
                      + .+|...||++.. +.....+ ++.+  .+..|+|||++|+.++.++ +.+||+.+|+..   .+.   ..     ...
T Consensus       310 s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~---~lt---~~-----~~~  374 (429)
T PRK01742        310 SDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE---VLS---ST-----FLD  374 (429)
T ss_pred             ECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE---Eec---CC-----CCC
Confidence            4 577777777543 2222333 3443  4578999999998887765 666999987532   111   11     123


Q ss_pred             EEEEEcCCCCEEEEE-ecCeEEEEEC--CCCceeeeeee----eeEEEEEee
Q 005342          641 NHIQFHPDQIHLLSI-HEGQIDVYEA--PTLNHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       641 ~~v~~spdg~~l~sg-~Dg~I~iwd~--~~g~~~~~l~~----i~~~~fs~~  685 (701)
                      .++.|+|||++|+++ .++.+.+|++  .+|+.++.+.+    +...+|||.
T Consensus       375 ~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        375 ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            467899999999985 7887777775  36888887764    788888875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=4.9e-14  Score=136.44  Aligned_cols=230  Identities=12%  Similarity=0.126  Sum_probs=162.2

Q ss_pred             CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec--CCCEEEEEECCCcEEEEecCCCCcccccccc
Q 005342          405 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENV  482 (701)
Q Consensus       405 ~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp--dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~  482 (701)
                      +.+|++-..|+|++||..    +++...   .+.+++..+..+.|..  .+..+.+|+.||+|++||++....       
T Consensus        41 ~~vav~lSngsv~lyd~~----tg~~l~---~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-------  106 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKG----TGQLLE---EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-------  106 (376)
T ss_pred             eeEEEEecCCeEEEEecc----chhhhh---eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-------
Confidence            568888888999999998    554444   3445777778888876  456789999999999998754321       


Q ss_pred             ceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-----CCeEEEEeCCCCcE-EEEe-cCCCCCeEEEEE
Q 005342          483 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-----GGKISIFSLETFQT-LATF-ANPPPIATYFIL  553 (701)
Q Consensus       483 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-----dg~I~iwd~~~~~~-~~~~-~~~~~~i~~l~~  553 (701)
                                .....   .......+..|++..  ++.+++|+     +-.+.+||++..+. ++.+ ..|...|+++.|
T Consensus       107 ----------~a~~~---~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF  173 (376)
T KOG1188|consen  107 ----------SARIS---WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRF  173 (376)
T ss_pred             ----------hhhee---ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence                      11111   111223466677776  66777764     36799999988765 5544 568899999999


Q ss_pred             cCCC--eEEEEeCCCcEEEEeCCCCc----eEEeecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCeeeee---
Q 005342          554 LPQD--LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCS---  623 (701)
Q Consensus       554 spdg--~l~~gs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~v~~spdg-~~l~s~s~D~~I~vwd~~~g~~~~~---  623 (701)
                      +|..  ++++||.||-|.+||+....    +.+++. |.+.|.++.|..++ +.|.+-+...+..+|+++.+.....   
T Consensus       174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~  252 (376)
T KOG1188|consen  174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN  252 (376)
T ss_pred             cCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence            9999  99999999999999987542    233333 66779999998876 3577778888899998876542210   


Q ss_pred             -----------------------------------------------------eeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342          624 -----------------------------------------------------KFLHSFQTGLVPETTIVNHIQFHPDQI  650 (701)
Q Consensus       624 -----------------------------------------------------~~l~~~~~~~~~~~~~v~~v~~spdg~  650 (701)
                                                                           ..+..+.+||   ...|+++.|...+.
T Consensus       253 ~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~---~eiVR~i~~~~~~~  329 (376)
T KOG1188|consen  253 PDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH---EEIVRDILFDVKND  329 (376)
T ss_pred             ccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCc---HHHHHHHhhhcccc
Confidence                                                                 0011111222   25567777887788


Q ss_pred             EEEEE-ecCeEEEEEC
Q 005342          651 HLLSI-HEGQIDVYEA  665 (701)
Q Consensus       651 ~l~sg-~Dg~I~iwd~  665 (701)
                      ++.+| .||.+.+|..
T Consensus       330 ~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  330 VLYTGGEDGLLQAWKV  345 (376)
T ss_pred             eeeccCCCceEEEEec
Confidence            89995 8999999985

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.57  E-value=5.2e-13  Score=148.24  Aligned_cols=267  Identities=10%  Similarity=0.078  Sum_probs=176.4

Q ss_pred             ccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          389 FNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       389 l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      |..|.. |..++.+++ +.+++|||.||+|++|+..+....+...+-..+......++.++...+.|..+|+++.||.|.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence            677888 888888755 599999999999999999866544222221122223467899999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeE-EEEec---CC-EEEEEe-CCeEEEEeCCCCcEEEE
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALR---GS-HLFSAS-GGKISIFSLETFQTLAT  540 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~-~l~~s---~~-~l~s~s-dg~I~iwd~~~~~~~~~  540 (701)
                      +.+++....   ..           ........ ......+.+. .-++.   +. .++.+. -+.|..||+++.....+
T Consensus      1124 ~~~id~~~~---~~-----------~~~~~~ri-~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1124 VLRIDHYNV---SK-----------RVATQVRI-PNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred             EEEcccccc---cc-----------ceeeeeec-ccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence            998744210   00           00011100 0001122333 33333   45 667777 69999999988776655


Q ss_pred             ec--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecC---CCEEEEEe--CCCeEE
Q 005342          541 FA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLS---LNVLVSSG--ADAQLC  611 (701)
Q Consensus       541 ~~--~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spd---g~~l~s~s--~D~~I~  611 (701)
                      ++  ...+.|++++.+|.+ ++++|+..|.+.+||++-+.++..+.. +..+++.+..+|-   ....++++  ..+.|.
T Consensus      1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred             hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence            54  235679999999999 999999999999999999998887763 5578888888873   24555544  478899


Q ss_pred             EEECCCCeeeeeeeee-e-------ccCC--CCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce
Q 005342          612 VWDAVGWKKLCSKFLH-S-------FQTG--LVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH  670 (701)
Q Consensus       612 vwd~~~g~~~~~~~l~-~-------~~~~--~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~  670 (701)
                      +|++.+|......... .       .+..  ..++.-......+...+.++.+| .|..|+.||..+-+.
T Consensus      1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            9999998543321111 0       0000  00111222333444445666775 899999999865443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=2.8e-13  Score=139.27  Aligned_cols=258  Identities=14%  Similarity=0.108  Sum_probs=189.2

Q ss_pred             CCCc-eEEEEEcCCCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          391 DNNQ-SRESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      +|+. -+.+..+|||+|+. +|...-.|++||+.++       .+.+.-......|.-.-.+-|-..++....|.+|.+-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-------SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-------SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH  121 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccc-------eeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence            4555 77899999999865 5667789999999732       1111111224556666666676667777778877664


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEeCCeEEEEeCCCCcEEEEecCCC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPP  545 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~  545 (701)
                                            ...|.....-+    ...-.+++++   -.+++.|+...|+-++++.|+.+..+....
T Consensus       122 ----------------------ak~G~hy~~RI----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~  175 (703)
T KOG2321|consen  122 ----------------------AKYGRHYRTRI----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS  175 (703)
T ss_pred             ----------------------hhcCeeeeeec----CcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc
Confidence                                  23333222111    2234456666   344555558899999999999999998778


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC------CCC-----CeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG------HQN-----RITCLAYSLSLNVLVSSGADAQLCVW  613 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~------h~~-----~V~~v~~spdg~~l~s~s~D~~I~vw  613 (701)
                      +.++++.+++-. +|++|+.+|.|..||.++...+.++..      |.+     .|+++.|+.+|-.+++|+.+|.|.||
T Consensus       176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy  255 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY  255 (703)
T ss_pred             ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE
Confidence            899999999999 999999999999999998776665542      333     49999999999999999999999999


Q ss_pred             ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC--CCEEEEEecCeEEEEECCCCceeeeeee---eeEEEEEeeEEe
Q 005342          614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLNHTSQVLL---ISHIMFVQIVVK  688 (701)
Q Consensus       614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd--g~~l~sg~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~~~~  688 (701)
                      |+++.++.     - +..+.  ...+|..+.|.+.  +..+++.+...++|||-.+|+....+..   ++.+|+-|..-.
T Consensus       256 DLRa~~pl-----~-~kdh~--~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm  327 (703)
T KOG2321|consen  256 DLRASKPL-----L-VKDHG--YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGM  327 (703)
T ss_pred             EcccCCce-----e-ecccC--CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCce
Confidence            99996433     2 21121  2278999999876  5667777888899999999999998887   888888776544


Q ss_pred             e
Q 005342          689 F  689 (701)
Q Consensus       689 f  689 (701)
                      |
T Consensus       328 ~  328 (703)
T KOG2321|consen  328 F  328 (703)
T ss_pred             E
Confidence            4

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=99.57  E-value=1.1e-14  Score=135.92  Aligned_cols=160  Identities=22%  Similarity=0.254  Sum_probs=133.2

Q ss_pred             hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCch---------hHHHHHHHHhcCCHHHHHHHhccc--ccccCCcccceeh
Q 005342           13 YTHLITLIMKFLEEENFKESLQALEQESKIFF---------NVHRFGEIVMNGEWEKAEKYLSAF--TKLDDSNHSKKMF   81 (701)
Q Consensus        13 ~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~---------~~~~~~~~i~~G~w~~~~~~l~~~--~~~~~~~~~~~~~   81 (701)
                      ++|+.|||+.||-..||.++|+.+.+|+|+..         +...+|.+|..|+.++|+..+..+  +.++.+.-   +.
T Consensus        26 ~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~---l~  102 (228)
T KOG2659|consen   26 REDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE---LF  102 (228)
T ss_pred             hhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh---HH
Confidence            89999999999999999999999999999987         288999999999999999999988  45665544   88


Q ss_pred             hhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhccccchhhhhccCCCC--ChhHHHHHHHHHHhhh
Q 005342           82 FELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTN--ATSSRAKLIDSLKLLV  159 (701)
Q Consensus        82 ~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~i  159 (701)
                      |.+++|+++||++.|...+|++|+|++|+|++.-+++.++.|...|.+.-+.. ++..+...  ..+.|.++++.++..|
T Consensus       103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~-~~~sp~~~l~~~s~R~kvA~~vN~ai  181 (228)
T KOG2659|consen  103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFEL-SQESPSAELLSQSLRQKVASEVNSAI  181 (228)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCC-cccCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998878899999999888876643 33333222  5677999999988877


Q ss_pred             ccccccccccccccccchHHHHHHH
Q 005342          160 KENRILQDKLIFPCVNNSALSSLIK  184 (701)
Q Consensus       160 ~~~~~~~~~~~~~~~p~~RL~~Ll~  184 (701)
                      -.      +...+  -..+|..|++
T Consensus       182 L~------~~~~~--~~~~l~~llk  198 (228)
T KOG2659|consen  182 LA------SQEHE--SEPKLPFLLK  198 (228)
T ss_pred             HH------Hhccc--ccchHHHHHH
Confidence            66      22211  2567888875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=7.2e-14  Score=135.29  Aligned_cols=194  Identities=13%  Similarity=0.182  Sum_probs=141.0

Q ss_pred             CEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEE
Q 005342          454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKIS  528 (701)
Q Consensus       454 ~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~  528 (701)
                      ..++++.++|.|++||.                     .+++.+.. + .++...+..+.|.    +..+.+|+ ||+|+
T Consensus        41 ~~vav~lSngsv~lyd~---------------------~tg~~l~~-f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr   97 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDK---------------------GTGQLLEE-F-KGPPATTNGVRFISCDSPHGVISCSSDGTVR   97 (376)
T ss_pred             eeEEEEecCCeEEEEec---------------------cchhhhhe-e-cCCCCcccceEEecCCCCCeeEEeccCCeEE
Confidence            46888888999999965                     55554432 2 4666677777776    56788888 99999


Q ss_pred             EEeCCCCcEEEEe--cCCC-CCeEEEEEcCCC-eEEEEeC----CCcEEEEeCCCCce-EEeec-CCCCCeEEEEEec-C
Q 005342          529 IFSLETFQTLATF--ANPP-PIATYFILLPQD-LFAFGFD----DSSILVHCPCTKKT-KAKLK-GHQNRITCLAYSL-S  597 (701)
Q Consensus       529 iwd~~~~~~~~~~--~~~~-~~i~~l~~spdg-~l~~gs~----dg~I~iwd~~~~~~-~~~l~-~h~~~V~~v~~sp-d  597 (701)
                      +||+++......+  .+++ .+..+++..-.+ .+++|++    +-.+.+||++..+. +..+. .|...|+++.|+| +
T Consensus        98 ~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~  177 (376)
T KOG1188|consen   98 LWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD  177 (376)
T ss_pred             EEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence            9999987654433  3443 345677766566 8888864    34799999998765 55543 4999999999999 6


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC--CEEEEEecCeEEEEECCCCceeeeee
Q 005342          598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       598 g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg--~~l~sg~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      .++|+|||.||-|.+||++....  ...+..+. .+.   ..|.++.|+.++  +....++.++..+|+++.|.....++
T Consensus       178 pnlLlSGSvDGLvnlfD~~~d~E--eDaL~~vi-N~~---sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  178 PNLLLSGSVDGLVNLFDTKKDNE--EDALLHVI-NHG---SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             CCeEEeecccceEEeeecCCCcc--hhhHHHhh-ccc---ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence            67999999999999999987521  12222121 221   779999999887  54444799999999999887655554


Q ss_pred             e
Q 005342          676 L  676 (701)
Q Consensus       676 ~  676 (701)
                      .
T Consensus       252 ~  252 (376)
T KOG1188|consen  252 N  252 (376)
T ss_pred             C
Confidence            3

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.55  E-value=1.5e-13  Score=139.80  Aligned_cols=247  Identities=16%  Similarity=0.161  Sum_probs=164.7

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC-----CCCCCEEEEEEecCCCEEEEEECCCc
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN-----SFGGRVVRLIYSHSGDFLVALTQTAT  464 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~-----~~~~~v~~l~~spdg~~l~s~s~dg~  464 (701)
                      .|.. |.++.|+.+...+.+++++..+.-|++.+    .....+.+|..     .|..+- +..=-.....++.+++||.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~----~s~~~~~~p~df~pt~~h~~~r-s~~~g~~~d~~~i~s~DGk   86 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSR----DSVEVAKLPDDFVPTDMHLGGR-SSGGGKGSDTLLICSNDGR   86 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccc----hhhhhhhCCcccCCcccccccc-ccCCCCCcceEEEEcCCce
Confidence            4555 88999999887777777666666666642    21112122211     110000 0000012246888899999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~  541 (701)
                      +.+.+-                      ++++-. .+ ..|.+++.+-.|+  |.-|++++ ||.|++|.- +|-...++
T Consensus        87 f~il~k----------------------~~rVE~-sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl  141 (737)
T KOG1524|consen   87 FVILNK----------------------SARVER-SI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV  141 (737)
T ss_pred             EEEecc----------------------cchhhh-hh-hhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH
Confidence            988742                      222211 12 4789999999999  88888888 999999996 66665566


Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      .....+|+|++|.|++ .++.+ ..+.+.|=-+.....+-.++.|.+-|.++.|+|..+.++||++|-..+|||..... 
T Consensus       142 ~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~-  219 (737)
T KOG1524|consen  142 VQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN-  219 (737)
T ss_pred             hhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-
Confidence            6667889999999999 44433 34567776666666677789999999999999999999999999999999988742 


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeeeeeEEEEEeeE
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHIMFVQIV  686 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~i~~~~fs~~~  686 (701)
                           +- -...   ++.+|++++|+|+ +.++.++-+++++=..+.|.       |-.++||++.
T Consensus       220 -----Lf-~S~~---~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~GS-------ifnlsWS~DG  268 (737)
T KOG1524|consen  220 -----LF-TSAA---EEYAITSVAFNPE-KDYLLWSYNTARFSSPRVGS-------IFNLSWSADG  268 (737)
T ss_pred             -----cc-cCCh---hccceeeeeeccc-cceeeeeeeeeeecCCCccc-------eEEEEEcCCC
Confidence                 22 1112   2389999999999 66666555555533333222       5555665553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=7e-14  Score=142.61  Aligned_cols=216  Identities=15%  Similarity=0.186  Sum_probs=155.9

Q ss_pred             CCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-
Q 005342          437 DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-  515 (701)
Q Consensus       437 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-  515 (701)
                      +.+|.+.|.|+.|+.||.+|++||.|-.+.|||.                     -..+++.. +..+|...|.++.|- 
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~---------------------~~~Kllhs-I~TgHtaNIFsvKFvP  103 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDP---------------------FEYKLLHS-ISTGHTANIFSVKFVP  103 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecc---------------------hhcceeee-eecccccceeEEeeec
Confidence            4589999999999999999999999999999965                     33343322 557999999999997 


Q ss_pred             ---CCEEEEEe-CCeEEEEeCCCC----------cEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE
Q 005342          516 ---GSHLFSAS-GGKISIFSLETF----------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK  579 (701)
Q Consensus       516 ---~~~l~s~s-dg~I~iwd~~~~----------~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~  579 (701)
                         ++.+++|. |..|+++|+...          ...+.+..|...|..++..|++  .+.++++||+|+-+|++....-
T Consensus       104 ~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c  183 (758)
T KOG1310|consen  104 YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC  183 (758)
T ss_pred             cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence               56677887 999999999741          2344556788889999999999  8999999999999999873211


Q ss_pred             -------Ee---ecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCC--------Ceeeee-----eeeeeccCCCCC
Q 005342          580 -------AK---LKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVG--------WKKLCS-----KFLHSFQTGLVP  635 (701)
Q Consensus       580 -------~~---l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~--------g~~~~~-----~~l~~~~~~~~~  635 (701)
                             ..   +.+.--...+++.+|. ..+|+.|+.|-..++||.+.        |.....     .++.-+..+|..
T Consensus       184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk  263 (758)
T KOG1310|consen  184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK  263 (758)
T ss_pred             CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence                   11   1111124678899994 55899999999999999432        110000     011112223321


Q ss_pred             CC--------CCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeee
Q 005342          636 ET--------TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       636 ~~--------~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l  674 (701)
                      ..        ..++-+.|+|+|.-|+++ ....|+++|+..++....+
T Consensus       264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            11        125778999999998887 5567999999887765444

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=2.9e-12  Score=125.05  Aligned_cols=258  Identities=12%  Similarity=0.060  Sum_probs=164.2

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      +..++|++.-..+|++..|..|++|+-..    .....++.   .....|+|++|-|.+..-++.+..+-|.+|......
T Consensus       101 lr~~aWhqH~~~fava~nddvVriy~kss----t~pt~Lks---~sQrnvtclawRPlsaselavgCr~gIciW~~s~tl  173 (445)
T KOG2139|consen  101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS----TCPTKLKS---VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL  173 (445)
T ss_pred             eeeEeechhhhhhhhhccCcEEEEeccCC----CCCceecc---hhhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence            56789999877889999999999999863    11122221   245789999999976544555555679999653221


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATY  550 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~  550 (701)
                      .      ....++.-....+++..   .++| .+|++++|.  |..+++++  |..|.+||..++..+.......+.++-
T Consensus       174 n------~~r~~~~~s~~~~qvl~---~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~sl  243 (445)
T KOG2139|consen  174 N------ANRNIRMMSTHHLQVLQ---DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSL  243 (445)
T ss_pred             c------cccccccccccchhhee---CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceee
Confidence            0      00000000001111221   1344 789999999  88899998  689999999998876655445677889


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCeee-------
Q 005342          551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKL-------  621 (701)
Q Consensus       551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~~-------  621 (701)
                      +.||||| ++++++-|+..++|.....-......-..+.|...+|+|+|++|. +++....++--........       
T Consensus       244 LkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~  323 (445)
T KOG2139|consen  244 LKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSI  323 (445)
T ss_pred             EEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccc
Confidence            9999999 999999999999996544333333333456899999999999654 4444444333322211000       


Q ss_pred             -eeeeee-----eccCCCCCCCCCeEEEEEcCCCCEEEEE---ec------CeEEEEECCCCc
Q 005342          622 -CSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSI---HE------GQIDVYEAPTLN  669 (701)
Q Consensus       622 -~~~~l~-----~~~~~~~~~~~~v~~v~~spdg~~l~sg---~D------g~I~iwd~~~g~  669 (701)
                       ....+.     ++.++..--.+++.+++|.|.|.++|+.   .+      ..|.+||....-
T Consensus       324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp  386 (445)
T KOG2139|consen  324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP  386 (445)
T ss_pred             eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence             000110     0122211123678999999999999985   22      236778875543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.54  E-value=1.9e-14  Score=153.24  Aligned_cols=248  Identities=14%  Similarity=0.183  Sum_probs=188.2

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      |.+|.+ |.|+.|...|.++++|+.|..++||..+    ++.|..   ...+|.+.|+.++.+.+..++++++.|..|++
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e----t~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME----TARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRV  258 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeecc----chhhhc---cCCCCccccchhccchhhhhhhhcccCceEEE
Confidence            679999 9999999999999999999999999987    777766   66789999999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEec---
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA---  542 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~---  542 (701)
                      |.+                     .++..+.  +..+|++.|++++|+ -.   +.+ ||++++||.+ ...+....   
T Consensus       259 Wrl---------------------~~~~pvs--vLrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~y~prp~  311 (1113)
T KOG0644|consen  259 WRL---------------------PDGAPVS--VLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRIYVPRPL  311 (1113)
T ss_pred             Eec---------------------CCCchHH--HHhccccceeeeccCccc---cCCCCCceEecccc-ccccccCCCCC
Confidence            955                     5555443  225899999999999 32   444 8999999987 11111110   


Q ss_pred             --CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCC
Q 005342          543 --NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       543 --~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg-~~l~s~s~D~~I~vwd~~~g  618 (701)
                        ....-+.++.+-..+ -+++|+.|+.-..|....      +.+|...+.-+.++.|. .+.+++-.+..+++|++.+|
T Consensus       312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g  385 (1113)
T KOG0644|consen  312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG  385 (1113)
T ss_pred             CcccccceeeeeccccccccccccCCcccccchhhH------hhhhccceEEEeccccccccceeeeeeeEeeeeecccc
Confidence              123456777777788 899999999888876532      12233333333444333 46777888899999999997


Q ss_pred             eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE--EecCeEEEEECCCCceeeeeee----eeEEEEEee
Q 005342          619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       619 ~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s--g~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~  685 (701)
                      ..     ++ ...+|.   ..+..+.++|-+..++-  |.||...|||+-.|..++.+.-    +..-.||++
T Consensus       386 ~l-----~H-~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd  449 (1113)
T KOG0644|consen  386 QL-----LH-NLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD  449 (1113)
T ss_pred             hh-----hh-hhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC
Confidence            42     23 444776   88999999998877774  5899999999999988776653    556666666

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=6.1e-12  Score=136.42  Aligned_cols=226  Identities=11%  Similarity=0.047  Sum_probs=148.8

Q ss_pred             CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---CCcEEEEecCCCCccccccccceeeEEee
Q 005342          414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQ  490 (701)
Q Consensus       414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~~~~~~~~g~~~~~~~i~~~d  490 (701)
                      ..+.+||..    ......+..    +...+.+.+|||||+.|+..+.   +..+.+|++                    
T Consensus       179 ~~l~~~d~d----g~~~~~lt~----~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl--------------------  230 (429)
T PRK03629        179 YELRVSDYD----GYNQFVVHR----SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL--------------------  230 (429)
T ss_pred             eeEEEEcCC----CCCCEEeec----CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEEC--------------------
Confidence            468888886    444344332    4568999999999999887653   245666644                    


Q ss_pred             CCCCeEEeecccCCCCCCeEEEEec--CCEEEEE-e-CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe
Q 005342          491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF  563 (701)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~-s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs  563 (701)
                       .+|+...  + ......+...+|+  |+.|+.. + +|  .|++||+++++..+. ..+...+....|+||| .|+..+
T Consensus       231 -~~G~~~~--l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s  305 (429)
T PRK03629        231 -ANGAVRQ--V-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTS  305 (429)
T ss_pred             -CCCCeEE--c-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEe
Confidence             4444221  1 1122334567898  8777755 3 44  699999988766543 3345567889999999 777666


Q ss_pred             CC-C--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342          564 DD-S--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPET  637 (701)
Q Consensus       564 ~d-g--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~  637 (701)
                      .+ +  .|+++|+.+++.. .+..+........|+|||++++..+.+   ..|++||+.+++.   ..+.   ..     
T Consensus       306 ~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~---~~Lt---~~-----  373 (429)
T PRK03629        306 DQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLT---DT-----  373 (429)
T ss_pred             CCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe---EEeC---CC-----
Confidence            54 3  5666677776543 344344456678999999998876543   3689999998752   2222   11     


Q ss_pred             CCeEEEEEcCCCCEEEEE-ecC---eEEEEECCCCceeeeeee----eeEEEEEee
Q 005342          638 TIVNHIQFHPDQIHLLSI-HEG---QIDVYEAPTLNHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       638 ~~v~~v~~spdg~~l~sg-~Dg---~I~iwd~~~g~~~~~l~~----i~~~~fs~~  685 (701)
                      .......|+|||++|+.+ .++   .+.++++ +|+..+.+.+    +...+|||.
T Consensus       374 ~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        374 FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence            223467899999999874 444   3778888 5655565644    788888873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=4e-12  Score=138.46  Aligned_cols=208  Identities=12%  Similarity=0.065  Sum_probs=136.2

Q ss_pred             eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE-EECCCc--EEEE
Q 005342          395 SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQTAT--HKLW  468 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s-~s~dg~--i~vw  468 (701)
                      +.+.+|+|||+.|+.++.+   ..+.+|++.    +++...+..    ..+...+..|+|||+.++. .+.+|.  |.+|
T Consensus       206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~----~g~~~~l~~----~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~  277 (433)
T PRK04922        206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLA----TGQRELVAS----FRGINGAPSFSPDGRRLALTLSRDGNPEIYVM  277 (433)
T ss_pred             cccccCCCCCCEEEEEecCCCCcEEEEEECC----CCCEEEecc----CCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence            7789999999999987643   469999997    565544331    2344557899999998764 455554  5555


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CC--eEEEEeCCCCcEEEEec
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GG--KISIFSLETFQTLATFA  542 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg--~I~iwd~~~~~~~~~~~  542 (701)
                                           |..++....  + ..+.......+|+  |+.++.++  +|  .|+++|+.+++... +.
T Consensus       278 ---------------------d~~~g~~~~--l-t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt  332 (433)
T PRK04922        278 ---------------------DLGSRQLTR--L-TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT  332 (433)
T ss_pred             ---------------------ECCCCCeEE--C-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee
Confidence                                 555555432  2 1333445677888  88887776  34  47778887765433 32


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEC
Q 005342          543 NPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDA  615 (701)
Q Consensus       543 ~~~~~i~~l~~spdg-~l~~gs~dg---~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~  615 (701)
                      .........+|+||| .|+..+.++   .|++||+.+++.. .+. +........|+|||++++..+.+   +.|+++++
T Consensus       333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            233344578999999 777655443   6999999888765 343 22345567999999988876653   46888888


Q ss_pred             CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC
Q 005342          616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP  647 (701)
Q Consensus       616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp  647 (701)
                      ..+..   ..   +..+.    +.+..++|+|
T Consensus       411 ~g~~~---~~---l~~~~----g~~~~p~wsp  432 (433)
T PRK04922        411 DGRVR---QR---LVSAD----GEVREPAWSP  432 (433)
T ss_pred             CCCce---EE---cccCC----CCCCCCccCC
Confidence            66421   22   22121    5567778887

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.51  E-value=2.8e-12  Score=123.37  Aligned_cols=221  Identities=9%  Similarity=0.075  Sum_probs=156.4

Q ss_pred             cCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEE
Q 005342          326 IMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRE  397 (701)
Q Consensus       326 h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~  397 (701)
                      -...|+  |.+|++|       ...+.+.||.....+.-..                          .+.|..|+. |+.
T Consensus         9 ~~~pit--chAwn~drt~iAv~~~~~evhiy~~~~~~~w~~--------------------------~htls~Hd~~vtg   60 (361)
T KOG1523|consen    9 LLEPIT--CHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP--------------------------AHTLSEHDKIVTG   60 (361)
T ss_pred             ccCcee--eeeecCCCceEEeccCCceEEEEEecCCCCcee--------------------------ceehhhhCcceeE
Confidence            345688  9999998       4445677776554432221                          334678999 999


Q ss_pred             EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342          398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  477 (701)
Q Consensus       398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  477 (701)
                      +.|+|.++.|++|+.|..-++|...+   .+. ++-.+..-.+...++++.|+|.++.|++||....|.||-++      
T Consensus        61 vdWap~snrIvtcs~drnayVw~~~~---~~~-WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E------  130 (361)
T KOG1523|consen   61 VDWAPKSNRIVTCSHDRNAYVWTQPS---GGT-WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE------  130 (361)
T ss_pred             EeecCCCCceeEccCCCCccccccCC---CCe-eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe------
Confidence            99999999999999999999999841   332 22121122367899999999999999999999999999653      


Q ss_pred             cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CC-EEEEEe-CCeEEEEeCC-----C-------------Cc
Q 005342          478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS-HLFSAS-GGKISIFSLE-----T-------------FQ  536 (701)
Q Consensus       478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~-~l~s~s-dg~I~iwd~~-----~-------------~~  536 (701)
                                   -++.--+.+.+...+.+.|.+++|. ++ .++.|+ |+..+++..-     +             |+
T Consensus       131 -------------~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~  197 (361)
T KOG1523|consen  131 -------------QENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQ  197 (361)
T ss_pred             -------------cccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHH
Confidence                         3333334344555678899999999 44 566777 9999988631     1             11


Q ss_pred             EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-eEEeecCCCCCeEEEEEecC
Q 005342          537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLS  597 (701)
Q Consensus       537 ~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~v~~spd  597 (701)
                      .+..+....+.+..+.|+|+| .|+-.+.|+.+.+-|..... .+.....-.-+..++.|-.+
T Consensus       198 lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  198 LMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE  260 (361)
T ss_pred             HHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence            223333456789999999999 99999999999999976553 33333333356666666543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=8.7e-13  Score=129.39  Aligned_cols=243  Identities=11%  Similarity=0.096  Sum_probs=165.4

Q ss_pred             EEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc-cc--C
Q 005342          322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC-FN--D  391 (701)
Q Consensus       322 ~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~-l~--~  391 (701)
                      .+.+|.+.|.  ++.||.+       +.|..+++|++..--..++                         ++.+ ++  .
T Consensus        51 D~~~H~GCiN--AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-------------------------~KPI~~~~~~  103 (609)
T KOG4227|consen   51 DVREHTGCIN--ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-------------------------PKPIGVMEHP  103 (609)
T ss_pred             hhhhhccccc--eeeeccCCeEEeecCCcceeeeechHHHHhhcC-------------------------CCCceeccCc
Confidence            4578999999  9999998       8899999999864332222                         1111 22  4


Q ss_pred             CCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342          392 NNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW  470 (701)
Q Consensus       392 h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  470 (701)
                      |.. |.+++|....+.+.+|+.+++|...|++    +.+...+. ......+.|..+..+|..+.+++.+.+|.|.+||.
T Consensus       104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE----t~qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~  178 (609)
T KOG4227|consen  104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIE----TKQSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDN  178 (609)
T ss_pred             cccceEEEEEccCCeeEecCCCcceeEeeecc----cceeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEec
Confidence            545 9999999999999999999999999998    44433322 12234568999999999999999999999999997


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc----------
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ----------  536 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~----------  536 (701)
                      .....                 .+.++   +.........++.|+   ..+|++++ .+.+-+||++...          
T Consensus       179 Rd~~~-----------------~~~~~---~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~  238 (609)
T KOG4227|consen  179 RDRQN-----------------PISLV---LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK  238 (609)
T ss_pred             cCCCC-----------------CCcee---eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccc
Confidence            54321                 11111   101222334444444   34455555 4555666654211          


Q ss_pred             ----------------------------------------EEEEecCCC-------CCeEEEEEcCCCeEEEEeCCCcEE
Q 005342          537 ----------------------------------------TLATFANPP-------PIATYFILLPQDLFAFGFDDSSIL  569 (701)
Q Consensus       537 ----------------------------------------~~~~~~~~~-------~~i~~l~~spdg~l~~gs~dg~I~  569 (701)
                                                              .+-.+. |.       ..+.+++|..|-.+++|+.+-.|+
T Consensus       239 ~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~  317 (609)
T KOG4227|consen  239 GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIH  317 (609)
T ss_pred             cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecceeeeccCcccceE
Confidence                                                    001111 11       123445555444789999999999


Q ss_pred             EEeCCC-----C------------------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          570 VHCPCT-----K------------------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       570 iwd~~~-----~------------------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +|.+..     |                  +....++||.+.++.|.|+|...+|++.+-.+.+++|.-..
T Consensus       318 ~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  318 IWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             EEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence            998742     1                  12457889999999999999999999999999999997543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.50  E-value=7.1e-13  Score=127.55  Aligned_cols=103  Identities=13%  Similarity=0.086  Sum_probs=76.8

Q ss_pred             CCCeEEEEEcCCC-eEEEEeCC--CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          545 PPIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~d--g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      ...+.-++|++|. ++++-.+.  +.+.+||++..+.-..+. ...+|....|+|....|+.+.....+++|....-   
T Consensus       318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~---  393 (447)
T KOG4497|consen  318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP---  393 (447)
T ss_pred             ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCc---
Confidence            3456789999999 77775443  379999998877655544 5568999999999888888888889999998763   


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecC
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG  658 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg  658 (701)
                        ..+. ++...    ..|..+.|+-+|..++. |.|.
T Consensus       394 --~~V~-vP~~G----F~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  394 --RVVG-VPKKG----FNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             --eEEe-cCCCC----ceeeeEEecCCCcEEEEEcCCc
Confidence              2222 22111    67999999999998887 4554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=7.3e-12  Score=135.81  Aligned_cols=208  Identities=12%  Similarity=0.021  Sum_probs=137.2

Q ss_pred             eEEEEEcCCCCeEEEEc---CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCc--EEEE
Q 005342          395 SRESTSLPDADSAVCAK---SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTAT--HKLW  468 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s---~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~--i~vw  468 (701)
                      +.+.+|||||+.|+..+   .+..+.+|++.    +++...+..    ..+.+....|+|||+.|+... .+|.  |.+|
T Consensus       201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~----~G~~~~l~~----~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~  272 (429)
T PRK03629        201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLA----NGAVRQVAS----FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  272 (429)
T ss_pred             eeeeEEcCCCCEEEEEEecCCCcEEEEEECC----CCCeEEccC----CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence            78899999999998754   34578899987    565444331    223445689999999888654 3554  4455


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C-C--eEEEEeCCCCcEEEEec
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-G--KISIFSLETFQTLATFA  542 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d-g--~I~iwd~~~~~~~~~~~  542 (701)
                                           |..++....  +. .+...+....|+  |+.|+..+ + +  .|+++|+.++... .+.
T Consensus       273 ---------------------d~~tg~~~~--lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt  327 (429)
T PRK03629        273 ---------------------DLASGQIRQ--VT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT  327 (429)
T ss_pred             ---------------------ECCCCCEEE--cc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee
Confidence                                 555555433  21 233456788899  88887776 3 3  5666677766543 333


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCe---EEEEEC
Q 005342          543 NPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ---LCVWDA  615 (701)
Q Consensus       543 ~~~~~i~~l~~spdg-~l~~gs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~---I~vwd~  615 (701)
                      ..........|+||| .|+..+.+   ..|++||+.+++.. .+... .......|+|||++|+.++.++.   ++++++
T Consensus       328 ~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        328 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence            344455678999999 77665543   36889999888654 34321 22346789999999998887764   778888


Q ss_pred             CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC
Q 005342          616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP  647 (701)
Q Consensus       616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp  647 (701)
                      ..+..   ..   +. ++.   +.+..++|+|
T Consensus       406 ~G~~~---~~---l~-~~~---~~~~~p~Wsp  427 (429)
T PRK03629        406 DGRFK---AR---LP-ATD---GQVKFPAWSP  427 (429)
T ss_pred             CCCCe---EE---Cc-cCC---CCcCCcccCC
Confidence            65421   22   32 333   6788889987

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.1e-11  Score=135.21  Aligned_cols=214  Identities=14%  Similarity=0.111  Sum_probs=141.5

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcC---CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE-EECCCcE
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQTATH  465 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~---d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s-~s~dg~i  465 (701)
                      .|.. +.+.+|+|||+.|+..+.   +..|.+|++.    +++...+.    .+.+.+.+.+|+|||+.|+. .+.+|..
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~----~g~~~~l~----~~~g~~~~~~~SPDG~~la~~~~~~g~~  270 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE----TGQRELVG----NFPGMTFAPRFSPDGRKVVMSLSQGGNT  270 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC----CCcEEEee----cCCCcccCcEECCCCCEEEEEEecCCCc
Confidence            4455 889999999999988753   4689999997    66555443    23456778899999998764 4556665


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--C--CeEEEEeCCCCcEEE
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLA  539 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--d--g~I~iwd~~~~~~~~  539 (701)
                      .+|-                   +|..++....  + ..+.......+|+  |+.++..+  +  ..|+++|+.++... 
T Consensus       271 ~Iy~-------------------~d~~~~~~~~--L-t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-  327 (435)
T PRK05137        271 DIYT-------------------MDLRSGTTTR--L-TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-  327 (435)
T ss_pred             eEEE-------------------EECCCCceEE--c-cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-
Confidence            5552                   2555555432  2 2344456678888  88887766  2  37889998766543 


Q ss_pred             EecCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC------Ce
Q 005342          540 TFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQ  609 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg-~l~~gs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D------~~  609 (701)
                      .+......+....|+||| .|+..+.+   ..|.+||+.++.. ..+. ....+....|+|||++|+..+.+      ..
T Consensus       328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~  405 (435)
T PRK05137        328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPK  405 (435)
T ss_pred             EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence            343344556778999999 77766543   3688999865543 3343 22346788999999988765543      36


Q ss_pred             EEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342          610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       610 I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd  648 (701)
                      ++++|+..+..   ..   +...     +.+...+|+|-
T Consensus       406 L~~~dl~g~~~---~~---l~~~-----~~~~~p~Wsp~  433 (435)
T PRK05137        406 LYTVDLTGRNE---RE---VPTP-----GDASDPAWSPL  433 (435)
T ss_pred             EEEEECCCCce---EE---ccCC-----CCccCcccCCC
Confidence            88889877542   22   2211     44567788873

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.49  E-value=9.7e-14  Score=139.25  Aligned_cols=223  Identities=12%  Similarity=0.191  Sum_probs=174.4

Q ss_pred             EEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      ..+.++.+|+.++.|+..|.+-.+|..    +..... +.     -...|.++.|..+..+++++ ....+.|||-    
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~----t~~L~~Ei~-----v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~----  198 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWV----TKKLHFEIN-----VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN----  198 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecc----cceeeeeee-----hhhhhhhhhhhcchHHHHhh-hhceEEEecC----
Confidence            468899999999999999999999997    444332 22     25678999999998876664 5577888853    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCE-EEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYF  551 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~-l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l  551 (701)
                                       ..-++..  +.  ....|..+.|- -.+ |++++ .|.++--|+.+|+.+..+....+.+..+
T Consensus       199 -----------------~GtElHC--lk--~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm  257 (545)
T KOG1272|consen  199 -----------------NGTELHC--LK--RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVM  257 (545)
T ss_pred             -----------------CCcEEee--hh--hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchh
Confidence                             2222221  21  23567777777 444 55556 6999999999999999998888889999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc
Q 005342          552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  630 (701)
Q Consensus       552 ~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~  630 (701)
                      +-+|-+ .+-+|..+|+|.+|.....+++-.+-.|.++|.++++.++|+|+||++.|..++|||+++-.     .+.++.
T Consensus       258 ~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-----ql~t~~  332 (545)
T KOG1272|consen  258 KQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-----QLHTYR  332 (545)
T ss_pred             hcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-----ccceee
Confidence            999999 99999999999999999988888888899999999999999999999999999999999843     222122


Q ss_pred             CCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEE
Q 005342          631 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE  664 (701)
Q Consensus       631 ~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd  664 (701)
                      .   +  .+...+++|..| +||.|....+.||.
T Consensus       333 t---p--~~a~~ls~Sqkg-lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  333 T---P--HPASNLSLSQKG-LLALSYGDHVQIWK  360 (545)
T ss_pred             c---C--CCcccccccccc-ceeeecCCeeeeeh
Confidence            2   1  567788888765 56667667789995

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.49  E-value=1.7e-10  Score=113.40  Aligned_cols=188  Identities=11%  Similarity=0.115  Sum_probs=140.3

Q ss_pred             eEEEEEcCCCCeEEEEcCC--CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342          395 SRESTSLPDADSAVCAKSL--EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d--~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  472 (701)
                      |-.+-|+..  ++|..+.+  ..+++.++..   ...+..+.+     ...|.++.++.+  +|+++-.+. |+|||+  
T Consensus        49 IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk---~~~ICe~~f-----pt~IL~VrmNr~--RLvV~Lee~-IyIydI--  113 (391)
T KOG2110|consen   49 IVEMLFSSS--LVAIVSIKQPRKLKVVHFKK---KTTICEIFF-----PTSILAVRMNRK--RLVVCLEES-IYIYDI--  113 (391)
T ss_pred             EEEeecccc--eeEEEecCCCceEEEEEccc---CceEEEEec-----CCceEEEEEccc--eEEEEEccc-EEEEec--
Confidence            555556655  55555444  3477887762   222333333     577888888754  566655543 888865  


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccC--CCCCCeEEEEec--CCEEEEEe---CCeEEEEeCCCCcEEEEecCCC
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAA--DPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPP  545 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~v~~l~~s--~~~l~s~s---dg~I~iwd~~~~~~~~~~~~~~  545 (701)
                                         .+-+++.. +..  .+...+.+++++  +.+++.-+   .|.|.+||..+-+.+..+..|.
T Consensus       114 -------------------~~MklLhT-I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~  173 (391)
T KOG2110|consen  114 -------------------KDMKLLHT-IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHK  173 (391)
T ss_pred             -------------------ccceeehh-hhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecC
Confidence                               44444332 211  344557777777  66888755   4999999999999999999999


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCc-EEEEeCCCCceEEeecCCC--CCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          546 PIATYFILLPQD-LFAFGFDDSS-ILVHCPCTKKTKAKLKGHQ--NRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~-I~iwd~~~~~~~~~l~~h~--~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +++-+++|+++| ++|++|+.|+ ||++++.+|+.+.+|+-..  ..|.+++|+|++++|++.|..++|.||.+..
T Consensus       174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            999999999999 9999999995 7999999999999997433  3688999999999999999999999998865

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=8.5e-12  Score=135.40  Aligned_cols=211  Identities=14%  Similarity=0.097  Sum_probs=135.7

Q ss_pred             eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE-EECCCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQTATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s-~s~dg~i~vwd~  470 (701)
                      +.+.+|+|||+.|+..+.+   ..|.+||+.    +++...+..    ..+.+.+.+|+|||+.|+. .+.+|...+|.+
T Consensus       198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~----~g~~~~l~~----~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLA----TGRRRVVAN----FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             cccceEcCCCCEEEEEEccCCCcEEEEEECC----CCCEEEeec----CCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            7789999999999887643   459999997    665544431    2345668899999998875 566888888855


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEE--eCCCCcEEEEecCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIF--SLETFQTLATFANP  544 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iw--d~~~~~~~~~~~~~  544 (701)
                                         |..++....  + ..+........|+  |+.++..+  +|...+|  |..++.... +...
T Consensus       270 -------------------d~~~~~~~~--l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~  326 (427)
T PRK02889        270 -------------------NADGSGLRR--L-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFT  326 (427)
T ss_pred             -------------------ECCCCCcEE--C-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecC
Confidence                               555444322  2 1233445667888  88877666  3555555  555554322 2222


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCC
Q 005342          545 PPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVG  617 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg---~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~vwd~~~  617 (701)
                      .......+|+||| +|+..+.++   .|++||+.+++... +..+ .......|+|||++|+.++.++   .+++.++..
T Consensus       327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g  404 (427)
T PRK02889        327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG  404 (427)
T ss_pred             CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence            2334568899999 877766554   69999998887544 3322 3346789999999888777544   466666643


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd  648 (701)
                      ..   ...+.    .+.   +.+...+|+|-
T Consensus       405 ~~---~~~l~----~~~---g~~~~p~wsp~  425 (427)
T PRK02889        405 RI---KQRLS----VQG---GDVREPSWGPF  425 (427)
T ss_pred             Cc---eEEee----cCC---CCCCCCccCCC
Confidence            21   12222    221   55677888874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=4e-13  Score=133.99  Aligned_cols=177  Identities=15%  Similarity=0.141  Sum_probs=137.7

Q ss_pred             EEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-
Q 005342          510 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-  584 (701)
Q Consensus       510 ~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-  584 (701)
                      .+++++  |..+++++ ||.+|+|+......+.....|...|.++.|+||| +|++-+.| ..+||+.+++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            577787  79999999 9999999988888777778899999999999999 99999999 999999999977766552 


Q ss_pred             -CCCCeEEEEEecCC-----CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec
Q 005342          585 -HQNRITCLAYSLSL-----NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE  657 (701)
Q Consensus       585 -h~~~V~~v~~spdg-----~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D  657 (701)
                       .......+.|+.|+     ...+....-+.|+.||+..+..-..-...+....+    ..|.+++.|+||++++.| .|
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEeccC
Confidence             22356777888876     23334445667888877765321111222122233    689999999999999997 79


Q ss_pred             CeEEEEECCCCceeeeeee-----eeEEEEEeeEEeeee
Q 005342          658 GQIDVYEAPTLNHTSQVLL-----ISHIMFVQIVVKFHS  691 (701)
Q Consensus       658 g~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~~~f~~  691 (701)
                      |.|-|++..+.+.++-.+.     ||++.|+|+....-+
T Consensus       303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence            9999999999998887776     999999998765544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=2e-11  Score=133.09  Aligned_cols=226  Identities=13%  Similarity=0.139  Sum_probs=151.1

Q ss_pred             CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---CCcEEEEecCCCCccccccccceeeEEee
Q 005342          414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQ  490 (701)
Q Consensus       414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~~~~~~~~g~~~~~~~i~~~d  490 (701)
                      ..|.+||..    +.....+.    .+...+.+..|+|||+.|+..+.   +..|.+||+                    
T Consensus       182 ~~l~~~d~d----g~~~~~lt----~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl--------------------  233 (435)
T PRK05137        182 KRLAIMDQD----GANVRYLT----DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDL--------------------  233 (435)
T ss_pred             eEEEEECCC----CCCcEEEe----cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEEC--------------------
Confidence            467788875    44444433    25678999999999999988764   356777754                    


Q ss_pred             CCCCeEEeecccCCCCCCeEEEEec--CCEEEE-Ee-CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe
Q 005342          491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFS-AS-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF  563 (701)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s-~s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs  563 (701)
                       .++....  + ..+.+.+.+.+|+  |+.|+. .+ ++  .|++||+.++.. ..+..+........|+||| .|+..+
T Consensus       234 -~~g~~~~--l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s  308 (435)
T PRK05137        234 -ETGQREL--V-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFES  308 (435)
T ss_pred             -CCCcEEE--e-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEE
Confidence             4444321  1 1344566778898  777654 44 44  588889987765 4455455566789999999 777666


Q ss_pred             C-CC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342          564 D-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPET  637 (701)
Q Consensus       564 ~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~  637 (701)
                      . +|  .|+++|+.+++.. .+..+.+.+....|+|||++|+..+.+   ..|.+||+.++..   ..+.   .+     
T Consensus       309 ~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt---~~-----  376 (435)
T PRK05137        309 DRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---RILT---SG-----  376 (435)
T ss_pred             CCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---Eecc---CC-----
Confidence            4 33  6899998776554 343345556778999999999876643   4689999876531   2221   12     


Q ss_pred             CCeEEEEEcCCCCEEEE-Ee-c-----CeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342          638 TIVNHIQFHPDQIHLLS-IH-E-----GQIDVYEAPTLNHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       638 ~~v~~v~~spdg~~l~s-g~-D-----g~I~iwd~~~g~~~~~l~~---i~~~~fs~~  685 (701)
                      ..+..+.|+|||++|+. +. .     ..++++|+..+.. +.+..   +...+|||.
T Consensus       377 ~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        377 FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSPL  433 (435)
T ss_pred             CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCCC
Confidence            33567899999999876 32 2     3588888865544 44433   777788764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.3e-11  Score=134.33  Aligned_cols=225  Identities=13%  Similarity=0.073  Sum_probs=146.5

Q ss_pred             CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEEEecCCCCccccccccceeeEEee
Q 005342          414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQ  490 (701)
Q Consensus       414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~~~g~~~~~~~i~~~d  490 (701)
                      ..|.+||..    ......+.    .+...+.+.+|+|||+.|+.++.+   ..+.+||+                    
T Consensus       184 ~~l~i~D~~----g~~~~~lt----~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl--------------------  235 (433)
T PRK04922        184 YALQVADSD----GYNPQTIL----RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDL--------------------  235 (433)
T ss_pred             EEEEEECCC----CCCceEee----cCCCccccccCCCCCCEEEEEecCCCCcEEEEEEC--------------------
Confidence            468888875    44334433    256678999999999999988753   35777754                    


Q ss_pred             CCCCeEEeecccCCCCCCeEEEEec--CCEEEE-Ee-CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe
Q 005342          491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFS-AS-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF  563 (701)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s-~s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs  563 (701)
                       .+++...  + ....+...+.+|+  |+.++. .+ +|  .|++||+.+++.. .+..+.......+|+||| .++.++
T Consensus       236 -~~g~~~~--l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~s  310 (433)
T PRK04922        236 -ATGQREL--V-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTS  310 (433)
T ss_pred             -CCCCEEE--e-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEE
Confidence             4444221  1 1223344567888  776654 34 44  6999999887653 444455555788999999 777666


Q ss_pred             C-CC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342          564 D-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPET  637 (701)
Q Consensus       564 ~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~  637 (701)
                      . +|  .|+++|+.+++... +..+.......+|+|||++++..+.++   .|++||+.+++..   .   +..+     
T Consensus       311 d~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---~---Lt~~-----  378 (433)
T PRK04922        311 DRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---T---LTPG-----  378 (433)
T ss_pred             CCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE---E---CCCC-----
Confidence            4 44  47888887776433 322333455789999999998765433   6999999887522   2   2212     


Q ss_pred             CCeEEEEEcCCCCEEEEE-e---cCeEEEEECCCCceeeeee---e-eeEEEEEe
Q 005342          638 TIVNHIQFHPDQIHLLSI-H---EGQIDVYEAPTLNHTSQVL---L-ISHIMFVQ  684 (701)
Q Consensus       638 ~~v~~v~~spdg~~l~sg-~---Dg~I~iwd~~~g~~~~~l~---~-i~~~~fs~  684 (701)
                      .....+.|+|||++++.+ .   .+.|.+++.. |...+.+.   + +...+|||
T Consensus       379 ~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        379 SLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            233467899999998864 3   2458888884 44444443   2 77777876

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.45  E-value=1.4e-13  Score=138.09  Aligned_cols=209  Identities=11%  Similarity=0.110  Sum_probs=171.2

Q ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE
Q 005342          442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  519 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l  519 (701)
                      -....+.++.+|++++.|+.-|.+..+|+                     .++.+... +  .-...|.++.|-  .+++
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw---------------------~t~~L~~E-i--~v~Etv~Dv~~LHneq~~  185 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDW---------------------VTKKLHFE-I--NVMETVRDVTFLHNEQFF  185 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeec---------------------ccceeeee-e--ehhhhhhhhhhhcchHHH
Confidence            34567889999999999999999999977                     44444321 1  224567888887  6777


Q ss_pred             EEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC
Q 005342          520 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL  598 (701)
Q Consensus       520 ~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg  598 (701)
                      |++....++|||- .|..++.+.. ...+..+.|-|.. ++++++..|.+.--|+.+|+.+..+....+.+..++-+|-+
T Consensus       186 AVAQK~y~yvYD~-~GtElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N  263 (545)
T KOG1272|consen  186 AVAQKKYVYVYDN-NGTELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN  263 (545)
T ss_pred             HhhhhceEEEecC-CCcEEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc
Confidence            8887899999996 6777887774 4578999999999 99999999999999999999999998888889999999988


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeeeee-
Q 005342          599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL-  676 (701)
Q Consensus       599 ~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~-  676 (701)
                      ..+-+|...|+|.+|...+.+     ++-.+..+.    ++|.+|++.++|+++++ |-|..++|||+++...+.++.. 
T Consensus       264 aVih~GhsnGtVSlWSP~ske-----PLvKiLcH~----g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp  334 (545)
T KOG1272|consen  264 AVIHLGHSNGTVSLWSPNSKE-----PLVKILCHR----GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP  334 (545)
T ss_pred             ceEEEcCCCceEEecCCCCcc-----hHHHHHhcC----CCcceEEECCCCcEEeecccccceeEeeeccccccceeecC
Confidence            899999999999999999853     444355454    99999999999999999 6899999999998877666654 


Q ss_pred             --eeEEEEEee
Q 005342          677 --ISHIMFVQI  685 (701)
Q Consensus       677 --i~~~~fs~~  685 (701)
                        .+.++||.-
T Consensus       335 ~~a~~ls~Sqk  345 (545)
T KOG1272|consen  335 HPASNLSLSQK  345 (545)
T ss_pred             CCccccccccc
Confidence              566666543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.45  E-value=9e-12  Score=119.17  Aligned_cols=132  Identities=14%  Similarity=0.154  Sum_probs=95.6

Q ss_pred             EEEEeCCCCcEEEEecC-CCCCeEEEEEcCCC-eEE--EEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE
Q 005342          527 ISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFA--FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV  602 (701)
Q Consensus       527 I~iwd~~~~~~~~~~~~-~~~~i~~l~~spdg-~l~--~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~  602 (701)
                      +..++... ..+..+.- ..++|.+++|+|+| .+|  .|..++.|.+||++ ++.+..+.  ...++.+.|+|+|++|+
T Consensus        41 l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~  116 (194)
T PF08662_consen   41 LFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLV  116 (194)
T ss_pred             EEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEE
Confidence            34444433 33444432 34569999999999 543  45567899999996 66666664  56789999999999999


Q ss_pred             EEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--e-----cCeEEEEECCCCceee
Q 005342          603 SSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-----EGQIDVYEAPTLNHTS  672 (701)
Q Consensus       603 s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~-----Dg~I~iwd~~~g~~~~  672 (701)
                      +++.+   |.|.+||+++.+.+     .+.  .|    ..++.++|+|||++++++  .     |+.++||+. +|+.+.
T Consensus       117 ~~g~~n~~G~l~~wd~~~~~~i-----~~~--~~----~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~  184 (194)
T PF08662_consen  117 LAGFGNLNGDLEFWDVRKKKKI-----STF--EH----SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLY  184 (194)
T ss_pred             EEEccCCCcEEEEEECCCCEEe-----ecc--cc----CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeE
Confidence            98754   67999999975432     211  22    557899999999999984  2     788999998 577665


Q ss_pred             ee
Q 005342          673 QV  674 (701)
Q Consensus       673 ~l  674 (701)
                      ..
T Consensus       185 ~~  186 (194)
T PF08662_consen  185 KK  186 (194)
T ss_pred             ec
Confidence            44

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=1.1e-12  Score=132.62  Aligned_cols=260  Identities=14%  Similarity=0.088  Sum_probs=185.4

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i  465 (701)
                      |.+|.+ |+.+.|...|..|++|+.|..|.+||..    .+. ..+.+ ..+|...|..-.|-|.  .+.+++++.||.+
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~----~~~-~~l~f-~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWV----SGS-PKLSF-ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhh----ccC-ccccc-ccccccchhhhhccCCCCCcCceeccccCce
Confidence            789999 9999999999999999999999999997    332 12222 2468888888888774  4578999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEE-eecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEE
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVM-TNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLAT  540 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~  540 (701)
                      ++=.+                    +.++.+. ++ ....|.++|.-++..   ..-+.+++ |+.+.-+|++++.....
T Consensus       212 r~s~i--------------------~~t~~~e~t~-rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~  270 (559)
T KOG1334|consen  212 RVSEI--------------------LETGYVENTK-RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK  270 (559)
T ss_pred             eeeee--------------------ccccceecce-ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence            98754                    1233322 11 114688899988887   55677777 99999999988765443


Q ss_pred             ec---CCCC---CeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc------eEEeecCC------CCCeEEEEEecCCCE
Q 005342          541 FA---NPPP---IATYFILLPQD--LFAFGFDDSSILVHCPCTKK------TKAKLKGH------QNRITCLAYSLSLNV  600 (701)
Q Consensus       541 ~~---~~~~---~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~------~~~~l~~h------~~~V~~v~~spdg~~  600 (701)
                      +.   .+..   ....++..|..  .+++|+.|..+++||.+.-.      .+..+..|      .-.|++++|+.++.-
T Consensus       271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE  350 (559)
T KOG1334|consen  271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE  350 (559)
T ss_pred             eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc
Confidence            32   2222   45889999988  99999999999999987532      22333222      236999999977665


Q ss_pred             EEEEeCCCeEEEEECCCCee---ee----eeeeeeccCCCCCCCCCeEEEEE-cCCCCEEEEE-ecCeEEEEECCCCcee
Q 005342          601 LVSSGADAQLCVWDAVGWKK---LC----SKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSI-HEGQIDVYEAPTLNHT  671 (701)
Q Consensus       601 l~s~s~D~~I~vwd~~~g~~---~~----~~~l~~~~~~~~~~~~~v~~v~~-spdg~~l~sg-~Dg~I~iwd~~~g~~~  671 (701)
                      +.++-.|-.|+++....+.-   ..    ....+.+..||... ..|-++-| -|...++++| +-|.|.||+-.+++.+
T Consensus       351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii  429 (559)
T KOG1334|consen  351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII  429 (559)
T ss_pred             eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence            55555677899996554421   00    01222234577532 34677765 6889999998 6689999999999998


Q ss_pred             eeeee
Q 005342          672 SQVLL  676 (701)
Q Consensus       672 ~~l~~  676 (701)
                      +.+.+
T Consensus       430 ~~Meg  434 (559)
T KOG1334|consen  430 RFMEG  434 (559)
T ss_pred             HHhhc
Confidence            88887

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.44  E-value=1.6e-10  Score=111.45  Aligned_cols=173  Identities=16%  Similarity=0.201  Sum_probs=124.5

Q ss_pred             CcEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC
Q 005342          414 EKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS  492 (701)
Q Consensus       414 ~~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~  492 (701)
                      ..|.|||-.    ...+ ..+.     -..+|.++.++++-  |++. ..+.|.||.+..+                 +.
T Consensus        75 NkviIWDD~----k~~~i~el~-----f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n-----------------~k  125 (346)
T KOG2111|consen   75 NKVIIWDDL----KERCIIELS-----FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDN-----------------PK  125 (346)
T ss_pred             ceEEEEecc----cCcEEEEEE-----eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCC-----------------hh
Confidence            479999943    2222 2223     25789999998763  4443 4578999976432                 11


Q ss_pred             CCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcE--EEEecCCCCCeEEEEEcCCC-eEEEEeCC
Q 005342          493 SKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQT--LATFANPPPIATYFILLPQD-LFAFGFDD  565 (701)
Q Consensus       493 ~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~spdg-~l~~gs~d  565 (701)
                      --..+.  ....+ ....+++-.  ..+||.-+  -|.|.+-|+...+.  ...+..|.+.|.|++.+-+| .+|++|..
T Consensus       126 ~l~~~e--t~~NP-kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStk  202 (346)
T KOG2111|consen  126 LLHVIE--TRSNP-KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTK  202 (346)
T ss_pred             heeeee--cccCC-CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccC
Confidence            111111  11112 224444444  34555555  49999999876554  46778899999999999999 99999999


Q ss_pred             Cc-EEEEeCCCCceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          566 SS-ILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       566 g~-I~iwd~~~~~~~~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      |+ |+|||..+|+.+++++-  ....|.+++|||++.+||.+|+.|++.|+.++..
T Consensus       203 GTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  203 GTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             cEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            96 79999999999999874  3347999999999999999999999999998863

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.4e-12  Score=133.32  Aligned_cols=214  Identities=11%  Similarity=0.066  Sum_probs=146.1

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i  465 (701)
                      |.||.+ |+++.|+.||.+|++|+.|-.+.|||.-    ..+...  .-..+|...|.++.|-|-  .+.+++|..|..|
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~----~~Kllh--sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF----EYKLLH--SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecch----hcceee--eeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            789999 9999999999999999999999999986    222111  123579999999999984  4578899999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEE-E-
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTL-A-  539 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~-~-  539 (701)
                      +++|+...+.  |.           .+.|...+...-..|...|..++.-   .+.+.+++ ||+|+-+|++....- . 
T Consensus       120 ~lfdl~~~~~--~~-----------~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~  186 (758)
T KOG1310|consen  120 KLFDLDSSKE--GG-----------MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD  186 (758)
T ss_pred             EEEecccccc--cc-----------cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc
Confidence            9999854221  00           0011111100113567777777776   36788888 999999999863211 1 


Q ss_pred             --------EecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC--------Cc----------eEEeec-CCC----
Q 005342          540 --------TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT--------KK----------TKAKLK-GHQ----  586 (701)
Q Consensus       540 --------~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~--------~~----------~~~~l~-~h~----  586 (701)
                              .+.+.--...++.++|..  ++|+|+.|-..++||.+.        +.          ++..+. +|-    
T Consensus       187 ~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~  266 (758)
T KOG1310|consen  187 EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ  266 (758)
T ss_pred             ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcc
Confidence                    111112245789999998  999999999999999431        11          122221 222    


Q ss_pred             -------CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          587 -------NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       587 -------~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                             ..++-++|+|+|.-|...=..-.|+++|+..++..
T Consensus       267 gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  267 GNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             cccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence                   12566799999874443333348999999987543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.6e-10  Score=113.15  Aligned_cols=272  Identities=13%  Similarity=0.121  Sum_probs=166.7

Q ss_pred             EEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCC-
Q 005342          334 CINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDAD-  405 (701)
Q Consensus       334 ~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~-  405 (701)
                      .++|++.       ..|-+|++||-.. ++...          ++..                 ...+|.+++|-|.+. 
T Consensus       103 ~~aWhqH~~~fava~nddvVriy~kss-t~pt~----------Lks~-----------------sQrnvtclawRPlsas  154 (445)
T KOG2139|consen  103 GVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTK----------LKSV-----------------SQRNVTCLAWRPLSAS  154 (445)
T ss_pred             eEeechhhhhhhhhccCcEEEEeccCC-CCCce----------ecch-----------------hhcceeEEEeccCCcc
Confidence            5666665       7889999998665 33322          1111                 122399999999765 


Q ss_pred             eEEEEcCCCcEEEEeccccCCCCce------eEee-cCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccc
Q 005342          406 SAVCAKSLEKSVNLKLQLINEPSEC------RTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSL  477 (701)
Q Consensus       406 ~l~s~s~d~~v~iw~~~~~~~~~~~------~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~  477 (701)
                      .|+.|.. +.|.+|........++.      .... +...+| ..|+++.|.+||..+++++. |..|.|||        
T Consensus       155 elavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWd--------  224 (445)
T KOG2139|consen  155 ELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWD--------  224 (445)
T ss_pred             eeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEc--------
Confidence            5555555 77999987632111111      0001 112234 78999999999999999987 68899984        


Q ss_pred             cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC-CcEEEEecCCCCCeEEEEE
Q 005342          478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFIL  553 (701)
Q Consensus       478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~  553 (701)
                                   ++++..+.  +.....+.++-+.||  |+++.+++ |+..++|+... ....+-.- ..+.|...+|
T Consensus       225 -------------pdtg~~~p--L~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacW  288 (445)
T KOG2139|consen  225 -------------PDTGQKIP--LIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACW  288 (445)
T ss_pred             -------------CCCCCccc--ccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeee
Confidence                         45555443  222345678899999  88998888 99999996543 33333333 3458999999


Q ss_pred             cCCC--eEEEEeCCCcEEEEeCCCC--c-----------eEEee------cC---CCCCeEEEEEecCCCEEEEEeCC--
Q 005342          554 LPQD--LFAFGFDDSSILVHCPCTK--K-----------TKAKL------KG---HQNRITCLAYSLSLNVLVSSGAD--  607 (701)
Q Consensus       554 spdg--~l~~gs~dg~I~iwd~~~~--~-----------~~~~l------~~---h~~~V~~v~~spdg~~l~s~s~D--  607 (701)
                      +|+|  ++++.+..-.++-......  .           ++..+      .+   --+.+.+++|.|.|.+||+.-..  
T Consensus       289 spcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  289 SPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             cCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence            9999  5555554444433221110  0           11111      11   13578999999999999986543  


Q ss_pred             ------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC---CCCEEEEE-ecCeEEEEEC
Q 005342          608 ------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       608 ------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp---dg~~l~sg-~Dg~I~iwd~  665 (701)
                            ..|.+||.+........... +..+.     .-..++|+|   +|++|..+ +.|.+.-|++
T Consensus       369 ~v~~~k~~i~~fdtr~sp~vels~cg-~i~ge-----~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  369 FVLLCKLHISRFDTRKSPPVELSYCG-MIGGE-----YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             hhhhhhhhhhhhcccccCceEEEecc-cccCC-----CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence                  34778888764333222222 22222     234566666   35666666 6777776665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3e-11  Score=131.19  Aligned_cols=226  Identities=15%  Similarity=0.051  Sum_probs=140.2

Q ss_pred             CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEEEecCCCCccccccccceeeEEee
Q 005342          414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQ  490 (701)
Q Consensus       414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~~~g~~~~~~~i~~~d  490 (701)
                      ..+.++|..    ......+.    .+...+.+.+|+|||+.|+..+.+   ..|.+||                     
T Consensus       176 ~~L~~~D~d----G~~~~~l~----~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~d---------------------  226 (427)
T PRK02889        176 YQLQISDAD----GQNAQSAL----SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHD---------------------  226 (427)
T ss_pred             cEEEEECCC----CCCceEec----cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEE---------------------
Confidence            356666664    33223322    256778999999999999887753   3466664                     


Q ss_pred             CCCCeEEeecccCCCCCCeEEEEec--CCEEEE-Ee-CCe--EEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe
Q 005342          491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFS-AS-GGK--ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF  563 (701)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s-~s-dg~--I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs  563 (701)
                      ..+++...  + ....+.+.+.+|+  |+.|+. .+ +|.  |+++|..++. ...+..+........|+||| .++..+
T Consensus       227 l~~g~~~~--l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s  302 (427)
T PRK02889        227 LATGRRRV--V-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTS  302 (427)
T ss_pred             CCCCCEEE--e-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEe
Confidence            45554322  1 1223455678898  777764 44 665  4555565544 45555455556778999999 666555


Q ss_pred             C-CCcEEEE--eCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342          564 D-DSSILVH--CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPET  637 (701)
Q Consensus       564 ~-dg~I~iw--d~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~  637 (701)
                      . +|...+|  +..+++... +..+.......+|||||++|+..+.++   .|++||+.+++..   .+   ..+     
T Consensus       303 ~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~---~l---t~~-----  370 (427)
T PRK02889        303 DRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT---AL---TDT-----  370 (427)
T ss_pred             cCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE---Ec---cCC-----
Confidence            4 4554444  555554332 222223344678999999998877654   6999999987522   22   112     


Q ss_pred             CCeEEEEEcCCCCEEEEE-e-cC--eEEEEECCCCceeeeee---e-eeEEEEEee
Q 005342          638 TIVNHIQFHPDQIHLLSI-H-EG--QIDVYEAPTLNHTSQVL---L-ISHIMFVQI  685 (701)
Q Consensus       638 ~~v~~v~~spdg~~l~sg-~-Dg--~I~iwd~~~g~~~~~l~---~-i~~~~fs~~  685 (701)
                      .....+.|+|||++|+.+ . .|  .+.+.+. +|+..+.+.   + +...+|||.
T Consensus       371 ~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        371 TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            223678999999998874 3 33  3666677 566555553   2 778888874

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=2.9e-11  Score=119.49  Aligned_cols=258  Identities=14%  Similarity=0.097  Sum_probs=176.8

Q ss_pred             eEEEEEcCCC--CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342          395 SRESTSLPDA--DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg--~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  472 (701)
                      |.+++|.-++  +.+..++.|..+..+.+.+..-......+. ........|..++.. || .|++|-.+|.+.+|....
T Consensus        58 is~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~-~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~  134 (412)
T KOG3881|consen   58 ISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAK-TVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKS  134 (412)
T ss_pred             hhhheeecCCceeEeeccccCcccccccccCCcccccccccc-ccccccccccchhhc-CC-EEEEEecCCcEEEEeccC
Confidence            6677776544  456666677777777776433222221111 112245667666654 33 588889999999998754


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-C--CeEEEEeCCCCcEEEEecCC--
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-G--GKISIFSLETFQTLATFANP--  544 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-d--g~I~iwd~~~~~~~~~~~~~--  544 (701)
                      +                |..+..+..  +.  -...+..+.-+   ...+++|+ .  ..+.+||+++.+.+.+-...  
T Consensus       135 ~----------------d~hss~l~~--la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn  194 (412)
T KOG3881|consen  135 G----------------DLHSSKLIK--LA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPN  194 (412)
T ss_pred             C----------------cccccccee--ee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCC
Confidence            4                222222221  11  11233333333   44566777 6  78999999988655543321  


Q ss_pred             -------CCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342          545 -------PPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW  613 (701)
Q Consensus       545 -------~~~i~~l~~spd--g-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vw  613 (701)
                             +-.++.+.|-+.  . .+|+++.-+.+++||.+.+ +++..+.--..+++++...|+|+++++|..-+.+..+
T Consensus       195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F  274 (412)
T KOG3881|consen  195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF  274 (412)
T ss_pred             ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhhee
Confidence                   224578889888  5 9999999999999999875 5677777778899999999999999999999999999


Q ss_pred             ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeeeee---eeEEEEE
Q 005342          614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL---ISHIMFV  683 (701)
Q Consensus       614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs  683 (701)
                      |.+.+.... .    ...+-.   +.|+++..+|.++++++ |-|..++|+|+.+-+++...-.   ++.+.+.
T Consensus       275 D~r~~kl~g-~----~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~  340 (412)
T KOG3881|consen  275 DLRGGKLLG-C----GLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLR  340 (412)
T ss_pred             cccCceeec-c----ccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEec
Confidence            999975321 1    122444   88999999999999998 4899999999998665543332   6666554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.40  E-value=2.3e-11  Score=117.27  Aligned_cols=253  Identities=13%  Similarity=0.164  Sum_probs=163.5

Q ss_pred             EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCcc
Q 005342          398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQS  476 (701)
Q Consensus       398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~  476 (701)
                      ..|||+|+++|+++.- .+.|-|.+    +-+..++-.    --+.|.-+.|..|.-+++++.. ++.|.+|++..    
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~----tlq~~qlf~----cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q----   80 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSE----TLQLHQLFL----CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ----   80 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccc----hhhHHHHHH----HHHHhhheeeeccceeeeeeeeccceEEEEEeec----
Confidence            5799999999999885 67777776    333333221    1356888999999988877655 88999997632    


Q ss_pred             ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342          477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFI  552 (701)
Q Consensus       477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~  552 (701)
                                       .+-..+ +. .....+.+++||  |+.++..+  +-.|.+|.+.+.+... ++-.+..+..++
T Consensus        81 -----------------pew~ck-Id-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~  140 (447)
T KOG4497|consen   81 -----------------PEWYCK-ID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYA  140 (447)
T ss_pred             -----------------ceeEEE-ec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEE
Confidence                             221111 22 345678899999  76666555  8999999998766543 333455668899


Q ss_pred             EcCCC-eEEEEeCC------------------------------------CcEEEEeCCCCceEEeecCCC-CCeEEEEE
Q 005342          553 LLPQD-LFAFGFDD------------------------------------SSILVHCPCTKKTKAKLKGHQ-NRITCLAY  594 (701)
Q Consensus       553 ~spdg-~l~~gs~d------------------------------------g~I~iwd~~~~~~~~~l~~h~-~~V~~v~~  594 (701)
                      |+||| +.+..+.-                                    ..+-+||---.-.+.  ..|. -++..++|
T Consensus       141 f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~w  218 (447)
T KOG4497|consen  141 FHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEW  218 (447)
T ss_pred             ECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEe
Confidence            99999 66655421                                    123344421111111  1233 36889999


Q ss_pred             ecCCCEEEEEeCCCeEEEEECCCCeeee----------------------------------------------------
Q 005342          595 SLSLNVLVSSGADAQLCVWDAVGWKKLC----------------------------------------------------  622 (701)
Q Consensus       595 spdg~~l~s~s~D~~I~vwd~~~g~~~~----------------------------------------------------  622 (701)
                      +|.+++|+.|+.|+.+||-+--+.+...                                                    
T Consensus       219 sP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~  298 (447)
T KOG4497|consen  219 SPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQ  298 (447)
T ss_pred             ccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhh
Confidence            9999999999999999887643322111                                                    


Q ss_pred             ---eeeeeecc--CCCCCCCCCeEEEEEcCCCCEEEEEe---cCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342          623 ---SKFLHSFQ--TGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEAPTLNHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       623 ---~~~l~~~~--~~~~~~~~~v~~v~~spdg~~l~sg~---Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~  685 (701)
                         ...++.+.  +....+..++.-++||+|..++++-.   -+.+-+||+++.++...+..   |....|.|-
T Consensus       299 ~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~  372 (447)
T KOG4497|consen  299 QMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG  372 (447)
T ss_pred             hhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCC
Confidence               00000000  11111234577899999999999954   45799999998887665544   777777554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.39  E-value=1.1e-11  Score=126.94  Aligned_cols=165  Identities=14%  Similarity=0.138  Sum_probs=122.6

Q ss_pred             CCEEEEEe-CCeEEEEeCCCCcEEEEec----CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-------------
Q 005342          516 GSHLFSAS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-------------  575 (701)
Q Consensus       516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~----~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-------------  575 (701)
                      +--++.|- -|.+.+.|....+..+.+.    -.+..++++.|-|.+  .++++..+|.+++||...             
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k  264 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK  264 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence            44456665 6888888865532222121    124689999999988  888889999999997531             


Q ss_pred             -C--------------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342          576 -K--------------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV  640 (701)
Q Consensus       576 -~--------------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v  640 (701)
                       +              .++..+.-..+.|+..+|+|||++||+.|.||.+||+|..+.++..      +....-   +..
T Consensus       265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg------~mkSYF---GGL  335 (636)
T KOG2394|consen  265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG------VMKSYF---GGL  335 (636)
T ss_pred             CCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH------HHHhhc---cce
Confidence             1              1111222234578999999999999999999999999999854332      111222   778


Q ss_pred             EEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEEee
Q 005342          641 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVVKF  689 (701)
Q Consensus       641 ~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~~f  689 (701)
                      .|++|||||++|++| .|.-|.||.+...+++..-.|    |+.++|.|...+-
T Consensus       336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~  389 (636)
T KOG2394|consen  336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTST  389 (636)
T ss_pred             EEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccc
Confidence            999999999999996 899999999999999988887    9999999865543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.39  E-value=9.5e-11  Score=130.64  Aligned_cols=255  Identities=12%  Similarity=0.162  Sum_probs=165.8

Q ss_pred             ccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCc
Q 005342          316 KSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSS  387 (701)
Q Consensus       316 ~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~  387 (701)
                      .|.++..|..|...+.  .++-+++        |.||+|++||...-                .++..         ...
T Consensus      1037 ~G~lVAhL~Ehs~~v~--k~a~s~~~~s~FvsgS~DGtVKvW~~~k~----------------~~~~~---------s~r 1089 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVI--KLAVSSEHTSLFVSGSDDGTVKVWNLRKL----------------EGEGG---------SAR 1089 (1431)
T ss_pred             cceEeehhhhcccccc--ceeecCCCCceEEEecCCceEEEeeehhh----------------hcCcc---------eee
Confidence            6788999999999998  7777776        89999999998542                22211         111


Q ss_pred             c---ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC-ceeEeecCCCCCCCCEEEE-EEecC-CC-EEEEE
Q 005342          388 C---FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRL-IYSHS-GD-FLVAL  459 (701)
Q Consensus       388 ~---l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~-~~~~l~~~~~~~~~~v~~l-~~spd-g~-~l~s~  459 (701)
                      +   +.--.+ +.++..-+.|+.+|.++.||.|++.+++..+... .+.....+.....+.+.++ +|... +. .++.+
T Consensus      1090 S~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~ 1169 (1431)
T KOG1240|consen 1090 SELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYA 1169 (1431)
T ss_pred             eeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEE
Confidence            1   111223 8899999999999999999999999987421111 1111122222233444443 44432 33 67777


Q ss_pred             ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc
Q 005342          460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ  536 (701)
Q Consensus       460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~  536 (701)
                      ...+.+..||.....            .+|.      ..  . ....+.|++++.+  +++++.|+ .|.+.+||++=+.
T Consensus      1170 T~~~~iv~~D~r~~~------------~~w~------lk--~-~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1170 TDLSRIVSWDTRMRH------------DAWR------LK--N-QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred             EeccceEEecchhhh------------hHHh------hh--c-CccccceeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence            778899999763321            0111      11  1 1234789999999  88999999 8999999998777


Q ss_pred             EEEEec-CCCCCeEEEEEcCC---C--eEEEEe-CCCcEEEEeCCCCceEEeecCC-------------------CCCeE
Q 005342          537 TLATFA-NPPPIATYFILLPQ---D--LFAFGF-DDSSILVHCPCTKKTKAKLKGH-------------------QNRIT  590 (701)
Q Consensus       537 ~~~~~~-~~~~~i~~l~~spd---g--~l~~gs-~dg~I~iwd~~~~~~~~~l~~h-------------------~~~V~  590 (701)
                      ++.... ++..+++.+..+|-   .  .+.+|+ ..+.|.+|++.+|....++...                   .-...
T Consensus      1229 ~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~ 1308 (1431)
T KOG1240|consen 1229 PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGI 1308 (1431)
T ss_pred             eeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccce
Confidence            776654 23456766666543   3  455555 6779999999998665554322                   01112


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          591 CLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       591 ~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      ...+.-.+.++.+|+.|..|+.||....
T Consensus      1309 ~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1309 SCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             eeecccCCceeeecCCccceeeccCCCc
Confidence            2333334568899999999999998653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.39  E-value=8.9e-12  Score=127.47  Aligned_cols=213  Identities=16%  Similarity=0.145  Sum_probs=149.6

Q ss_pred             cCCCCeEEEEcCCCcEEEEeccccCCCCceeEe-ecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEEecCCCCc---
Q 005342          401 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQ---  475 (701)
Q Consensus       401 spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l-~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~---  475 (701)
                      .|+|--+..|-.-|.|.+.|...    .+..++ ..........|+|+.|-|.+. .++++-.+|.+.+||..-...   
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~----~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~  257 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPIN----FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA  257 (636)
T ss_pred             CCCCcceEEeeccCceEEecchh----hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence            46677788888888898888752    111110 000012357899999999655 556667799999998632211   


Q ss_pred             c---ccccccceeeEEeeCCCC-eEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe
Q 005342          476 S---LEEENVNMESQLYQPSSK-LVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA  548 (701)
Q Consensus       476 ~---~g~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i  548 (701)
                      +   .-+.-..+.+..|-.... ..+.. + .--.+.|..++|+  |++||+.+ ||.++|+|..+.+.+..++..-+..
T Consensus       258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~-w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL  335 (636)
T KOG2394|consen  258 PSYQALKDGDQFAILTSKSKKTRNPVAR-W-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL  335 (636)
T ss_pred             CcccccCCCCeeEEeeeeccccCCccce-e-EeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce
Confidence            0   001111122222221111 11111 1 0124578899999  99999999 9999999999888777766667789


Q ss_pred             EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec-------------------------------
Q 005342          549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-------------------------------  596 (701)
Q Consensus       549 ~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp-------------------------------  596 (701)
                      .|++||||| +|++|++|--|.||.+..++++..=.||+++|+.|+|.|                               
T Consensus       336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~  415 (636)
T KOG2394|consen  336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANG  415 (636)
T ss_pred             EEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCC
Confidence            999999999 999999999999999999999999999999999999983                               


Q ss_pred             ----CC-------------CEEEEEeCCCeEEEEECCCCe
Q 005342          597 ----SL-------------NVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       597 ----dg-------------~~l~s~s~D~~I~vwd~~~g~  619 (701)
                          ++             -.+.|.+.|..+++||+....
T Consensus       416 ~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  416 TGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             CCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence                01             146678889999999998754

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=2.4e-11  Score=120.14  Aligned_cols=212  Identities=15%  Similarity=0.137  Sum_probs=154.2

Q ss_pred             CeEEEEcCCCcEEEEeccccCCCC-ceeEeecCCCCCCCCEEEEEEecCCCEEEE-EECC--CcEEEEecCCCCcccccc
Q 005342          405 DSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQT--ATHKLWKWQSNKQSLEEE  480 (701)
Q Consensus       405 ~~l~s~s~d~~v~iw~~~~~~~~~-~~~~l~~~~~~~~~~v~~l~~spdg~~l~s-~s~d--g~i~vwd~~~~~~~~g~~  480 (701)
                      ..|++|-.+|.+.+|......... ....+.     ....+..+.-++...+|++ |+..  ..+.+||++...+     
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la-----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-----  185 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-----  185 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccccccceeee-----cCCceeeeccCCCCCceEecCchhcccceeeeeccccee-----
Confidence            367788888999999987322111 111111     2356677777776666655 7777  8899999866532     


Q ss_pred             ccceeeEEeeCCC---CeEEeecccCCCCCCeEEEEec-C---CEEEEEe-CCeEEEEeCCCC-cEEEEecCCCCCeEEE
Q 005342          481 NVNMESQLYQPSS---KLVMTNDIAADPKDSISCFALR-G---SHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYF  551 (701)
Q Consensus       481 ~~~~~i~~~d~~~---~~~~~~~~~~~~~~~v~~l~~s-~---~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~~~i~~l  551 (701)
                             +|...+   ..+-   +  .-.-+++++.|- |   ..+++++ -+.+++||.+.+ +++..|.-...+++++
T Consensus       186 -------iw~aKNvpnD~L~---L--rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~  253 (412)
T KOG3881|consen  186 -------IWSAKNVPNDRLG---L--RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST  253 (412)
T ss_pred             -------eeeccCCCCcccc---c--eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence                   232211   1110   0  012345556665 3   5688888 799999999875 4788888778899999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342          552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  629 (701)
Q Consensus       552 ~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~  629 (701)
                      ...|+| +|++|..-|.+..||++.++.... +.|..+.|+++..+|.++++|+||-|..+||+|+++..++....+.  
T Consensus       254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK--  331 (412)
T KOG3881|consen  254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK--  331 (412)
T ss_pred             eecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh--
Confidence            999999 999999999999999999988776 8889999999999999999999999999999999995433322223  


Q ss_pred             cCCCCCCCCCeEEEEEcCC
Q 005342          630 QTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       630 ~~~~~~~~~~v~~v~~spd  648 (701)
                              ...+++-+.++
T Consensus       332 --------s~lt~il~~~~  342 (412)
T KOG3881|consen  332 --------SRLTFILLRDD  342 (412)
T ss_pred             --------ccccEEEecCC
Confidence                    55677777665

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=2.9e-10  Score=117.53  Aligned_cols=305  Identities=12%  Similarity=0.107  Sum_probs=188.4

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-----------------CCCCeEEEEeccCCccccccccccCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----------------ANNETISLKDFPTVSNLRYASSILTDKPN  369 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~  369 (701)
                      ..++|.+..++..+.+...-  .+.  ++.|||-                 .....+.+|+++++.....+         
T Consensus        55 ~~v~i~~~~~~~~~lt~~~~--~~~--~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~---------  121 (566)
T KOG2315|consen   55 QVVKVFEIATLKVVLCVELK--KTY--DLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQI---------  121 (566)
T ss_pred             CeEEEEEccCCcEEEEeccc--eee--eeeecccccccccccccccccCCCCCCCceeeeeeccceehhhe---------
Confidence            66777777777533332222  455  8889987                 22345679999884333221         


Q ss_pred             CCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEE
Q 005342          370 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY  449 (701)
Q Consensus       370 ~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~  449 (701)
                       ..                  ...+-|++.|++|..+.|-- ..+.+.+|+..+    .+...-.+    |...|..+.+
T Consensus       122 -q~------------------k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~----f~~~~~kl----~~~~i~~f~l  173 (566)
T KOG2315|consen  122 -QK------------------KMQNGWVPQFSIDESLAARL-VSNEVQFYDLGS----FKTIQHKL----SVSGITMLSL  173 (566)
T ss_pred             -eh------------------hhhcCcccccccchhhhhhh-hcceEEEEecCC----ccceeeee----eccceeeEEe
Confidence             11                  11113678899986654432 236799999874    11111112    5688999999


Q ss_pred             ecCCC--EEEE-----EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EE
Q 005342          450 SHSGD--FLVA-----LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HL  519 (701)
Q Consensus       450 spdg~--~l~s-----~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l  519 (701)
                      ||.+.  .+++     .|.-+.+++|.......                 ...+-.+.+   ....-..+.|+  |. .|
T Consensus       174 Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~-----------------~~~~a~ksF---Fkadkvqm~WN~~gt~LL  233 (566)
T KOG2315|consen  174 SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ-----------------HQPVANKSF---FKADKVQMKWNKLGTALL  233 (566)
T ss_pred             cCCCCCceEEEEccCCCCCCcEEEEeccccccc-----------------cchhhhccc---cccceeEEEeccCCceEE
Confidence            99743  3332     23346788886531110                 000000001   11122245555  33 22


Q ss_pred             EEE--e-C---------CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEeecC
Q 005342          520 FSA--S-G---------GKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKG  584 (701)
Q Consensus       520 ~s~--s-d---------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~~~~~~l~~  584 (701)
                      +.+  . |         .++++++++.....-.+. ..++|.++.|+|+|   -++.|..-.++.|||++ +.++..+. 
T Consensus       234 vLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-  310 (566)
T KOG2315|consen  234 VLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-  310 (566)
T ss_pred             EEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-
Confidence            222  1 3         368899987444444443 47899999999999   45567778899999975 66766654 


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE------
Q 005342          585 HQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI------  655 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg------  655 (701)
                       .++-+++-|+|.|++++.+|.+   |.|-|||+.+.++     +.++..      ...+-+.|+|||.+++++      
T Consensus       311 -egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~-----i~~~~a------~~tt~~eW~PdGe~flTATTaPRl  378 (566)
T KOG2315|consen  311 -EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL-----IAKFKA------ANTTVFEWSPDGEYFLTATTAPRL  378 (566)
T ss_pred             -CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh-----cccccc------CCceEEEEcCCCcEEEEEeccccE
Confidence             6778999999999999888764   7899999999532     222222      345678999999999974      


Q ss_pred             -ecCeEEEEECCCCceeeee--ee-eeEEEEEeeEEe
Q 005342          656 -HEGQIDVYEAPTLNHTSQV--LL-ISHIMFVQIVVK  688 (701)
Q Consensus       656 -~Dg~I~iwd~~~g~~~~~l--~~-i~~~~fs~~~~~  688 (701)
                       -|+.++||++ +|..+..-  +. ...+.|-|+.-.
T Consensus       379 rvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P~~~~  414 (566)
T KOG2315|consen  379 RVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRPFNDK  414 (566)
T ss_pred             EecCCeEEEEe-cCceeehhhhhHhHhheeeeecCCc
Confidence             2889999999 77765432  22 556677666544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.37  E-value=6.8e-11  Score=113.13  Aligned_cols=108  Identities=15%  Similarity=0.222  Sum_probs=87.0

Q ss_pred             CCCCeEEEEec--CCEEEEE--e-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCC
Q 005342          505 PKDSISCFALR--GSHLFSA--S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCT  575 (701)
Q Consensus       505 ~~~~v~~l~~s--~~~l~s~--s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~---dg~I~iwd~~~  575 (701)
                      ..++|.+++|+  |+.+++.  . ++.|.+||++ ++.+..+.  ...+..+.|+|+| ++++|+.   .|.|.+||+++
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~  134 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK  134 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            44579999999  7776544  3 5799999996 66777664  4577899999999 8887764   46799999999


Q ss_pred             CceEEeecCCCCCeEEEEEecCCCEEEEEeC------CCeEEEEECCC
Q 005342          576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA------DAQLCVWDAVG  617 (701)
Q Consensus       576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~------D~~I~vwd~~~  617 (701)
                      .+.+.+.. |. .++.++|+|||+++++++.      |+.++||+...
T Consensus       135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            98888765 43 4789999999999998764      78999999864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.35  E-value=5.5e-09  Score=110.18  Aligned_cols=260  Identities=11%  Similarity=0.091  Sum_probs=161.2

Q ss_pred             eEEEEEcCCCCeEEEEcC----CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEe
Q 005342          395 SRESTSLPDADSAVCAKS----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWK  469 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~----d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd  469 (701)
                      ...++++|++++|.++..    ++.|..|++...  ++.+..+.-. .........++++|++++++++.. +|.+.+++
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~--~g~L~~~~~~-~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD--TGTLTLLNSV-PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT--TTEEEEEEEE-EESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCC--cceeEEeeee-ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            446889999999998866    578999988731  1444333311 112455678999999999999886 89999998


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCc--E--EEEe
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQ--T--LATF  541 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~--~--~~~~  541 (701)
                      +...    |.......  ++.. .+.  .............++.++  |+++++..  ...|++|++....  .  ...+
T Consensus       116 l~~~----g~l~~~~~--~~~~-~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~  186 (345)
T PF10282_consen  116 LDDD----GSLGEVVQ--TVRH-EGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI  186 (345)
T ss_dssp             ECTT----SEEEEEEE--EEES-EEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE
T ss_pred             ccCC----cccceeee--eccc-CCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc
Confidence            8442    11110000  0000 000  000001223457788888  78888877  4789999987654  3  2222


Q ss_pred             c-CCCCCeEEEEEcCCC-eE-EEEeCCCcEEEEeCC--CCc--eEEeecC------CCCCeEEEEEecCCCEEEEEe-CC
Q 005342          542 A-NPPPIATYFILLPQD-LF-AFGFDDSSILVHCPC--TKK--TKAKLKG------HQNRITCLAYSLSLNVLVSSG-AD  607 (701)
Q Consensus       542 ~-~~~~~i~~l~~spdg-~l-~~gs~dg~I~iwd~~--~~~--~~~~l~~------h~~~V~~v~~spdg~~l~s~s-~D  607 (701)
                      . ......+.++|+|++ ++ ++.-.++.|.++++.  ++.  .++.+..      .......++++|||++|+++. ..
T Consensus       187 ~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~  266 (345)
T PF10282_consen  187 KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS  266 (345)
T ss_dssp             ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT
T ss_pred             ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC
Confidence            2 245667999999999 44 555667789999987  442  2222221      112578899999999876544 57


Q ss_pred             CeEEEEEC--CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEEC--CCCceeee
Q 005342          608 AQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEA--PTLNHTSQ  673 (701)
Q Consensus       608 ~~I~vwd~--~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~--~~g~~~~~  673 (701)
                      ++|.+|++  .+|.......   +..+.    ...+.++++|+|++|+++  .++.|.+|++  .+|.+...
T Consensus       267 ~sI~vf~~d~~~g~l~~~~~---~~~~G----~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  267 NSISVFDLDPATGTLTLVQT---VPTGG----KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             TEEEEEEECTTTTTEEEEEE---EEESS----SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEE---EeCCC----CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence            79999999  3454333222   33221    446899999999999985  5788999876  57765443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=5.8e-10  Score=120.58  Aligned_cols=232  Identities=15%  Similarity=0.078  Sum_probs=140.8

Q ss_pred             CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCE--EE-EEECCCcEEEEecCCCCccccccccceeeEEee
Q 005342          414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF--LV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQ  490 (701)
Q Consensus       414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~--l~-s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d  490 (701)
                      ..+.+.|.+    ++....++.    ....+.+-.|||||+.  ++ +...+|.-.||-.                   +
T Consensus       165 ~~l~~~d~d----G~~~~~lt~----~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~-------------------~  217 (428)
T PRK01029        165 GELWSVDYD----GQNLRPLTQ----EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLG-------------------S  217 (428)
T ss_pred             ceEEEEcCC----CCCceEccc----CCCCcccceEccCCCceEEEEEEccCCCceEEEE-------------------E
Confidence            356666665    444444332    3445667799999985  32 3333555455522                   4


Q ss_pred             CCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CC----eEEEEeCCCC---cEEEEecCCCCCeEEEEEcCCC-e
Q 005342          491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GG----KISIFSLETF---QTLATFANPPPIATYFILLPQD-L  558 (701)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg----~I~iwd~~~~---~~~~~~~~~~~~i~~l~~spdg-~  558 (701)
                      ..+++...  + ....+.....+||  |+.|+..+  +|    .+..||+.++   ...+...+........+|+||| .
T Consensus       218 l~~g~~~~--l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~  294 (428)
T PRK01029        218 LENPAGKK--I-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR  294 (428)
T ss_pred             CCCCCceE--e-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE
Confidence            45554221  1 1123344567888  87877655  23    3444777653   3333333223344678999999 6


Q ss_pred             EEEEe-CCCc--EEEEeCCC-CceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccC
Q 005342          559 FAFGF-DDSS--ILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQT  631 (701)
Q Consensus       559 l~~gs-~dg~--I~iwd~~~-~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~  631 (701)
                      |+..+ .+|.  |+++++.. +.....+..+...+....|||||++|+..+.+   ..|++||+.+++..   .+.   .
T Consensus       295 Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~---~Lt---~  368 (428)
T PRK01029        295 LVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY---QLT---T  368 (428)
T ss_pred             EEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---Ecc---C
Confidence            66655 4564  55555542 33344555555667788999999998876553   47999999998532   222   2


Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEE-E---ecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342          632 GLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       632 ~~~~~~~~v~~v~~spdg~~l~s-g---~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~  685 (701)
                      +.    ..+....|+|||++|+. +   ....|++||+.+++......+   +...+|||.
T Consensus       369 ~~----~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        369 SP----ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             CC----CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence            21    45677999999998875 3   245699999988876554443   677888864

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.34  E-value=6.7e-10  Score=117.03  Aligned_cols=274  Identities=15%  Similarity=0.126  Sum_probs=164.2

Q ss_pred             CCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEe
Q 005342          342 NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLK  420 (701)
Q Consensus       342 ~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~  420 (701)
                      .++.+.+.|..+.+.+..+          +..                   .. -..+.|+|||++++.++.||.|.++|
T Consensus        14 ~~~~v~viD~~t~~~~~~i----------~~~-------------------~~~h~~~~~s~Dgr~~yv~~rdg~vsviD   64 (369)
T PF02239_consen   14 GSGSVAVIDGATNKVVARI----------PTG-------------------GAPHAGLKFSPDGRYLYVANRDGTVSVID   64 (369)
T ss_dssp             GGTEEEEEETTT-SEEEEE----------E-S-------------------TTEEEEEE-TT-SSEEEEEETTSEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEE----------cCC-------------------CCceeEEEecCCCCEEEEEcCCCeEEEEE
Confidence            4688888899888877763          211                   11 23477999999999999999999999


Q ss_pred             ccccCCCCcee-EeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342          421 LQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT  498 (701)
Q Consensus       421 ~~~~~~~~~~~-~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~  498 (701)
                      +.    +.+.. .+..     .....++++|+||+++++++. ++.+.++|.                     ++.+.+.
T Consensus        65 ~~----~~~~v~~i~~-----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~---------------------~tle~v~  114 (369)
T PF02239_consen   65 LA----TGKVVATIKV-----GGNPRGIAVSPDGKYVYVANYEPGTVSVIDA---------------------ETLEPVK  114 (369)
T ss_dssp             TT----SSSEEEEEE------SSEEEEEEE--TTTEEEEEEEETTEEEEEET---------------------TT--EEE
T ss_pred             CC----cccEEEEEec-----CCCcceEEEcCCCCEEEEEecCCCceeEecc---------------------cccccee
Confidence            98    44433 3322     456788999999999988775 799999965                     3433332


Q ss_pred             ecccC------CCCCCeEEEEec--CCEEE-EEeC-CeEEEEeCCCCcEE--EEecCCCCCeEEEEEcCCC-eE-EEEeC
Q 005342          499 NDIAA------DPKDSISCFALR--GSHLF-SASG-GKISIFSLETFQTL--ATFANPPPIATYFILLPQD-LF-AFGFD  564 (701)
Q Consensus       499 ~~~~~------~~~~~v~~l~~s--~~~l~-s~sd-g~I~iwd~~~~~~~--~~~~~~~~~i~~l~~spdg-~l-~~gs~  564 (701)
                      . +..      .....+..+..+  +..++ +.-| +.|.+.|....+.+  ..+. .........|+|++ ++ ++...
T Consensus       115 ~-I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~  192 (369)
T PF02239_consen  115 T-IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANG  192 (369)
T ss_dssp             E-EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGG
T ss_pred             e-cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcccceeeecccc
Confidence            1 110      133466667666  44344 4444 99999998765433  3333 44566789999999 54 55566


Q ss_pred             CCcEEEEeCCCCceEEeecC----CCCCeEEE-------EEec--CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC
Q 005342          565 DSSILVHCPCTKKTKAKLKG----HQNRITCL-------AYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT  631 (701)
Q Consensus       565 dg~I~iwd~~~~~~~~~l~~----h~~~V~~v-------~~sp--dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~  631 (701)
                      +..|-++|..+++.+..+..    |..++..+       .|..  .+...++.-....+.+||..+++..  +.+.   .
T Consensus       193 sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv--~~I~---~  267 (369)
T PF02239_consen  193 SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV--KTIP---T  267 (369)
T ss_dssp             GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE--EEEE----
T ss_pred             cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE--EEEE---C
Confidence            77999999999887765532    44444332       1221  2233323333346677888887533  2333   2


Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEEE-----ecCeEEEEECCCCceeeeeee-----eeEEEEEeeE
Q 005342          632 GLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQIV  686 (701)
Q Consensus       632 ~~~~~~~~v~~v~~spdg~~l~sg-----~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~  686 (701)
                      ..    .+ ..+.-||+++++.+.     ..++|.++|.++.+.+.++..     +.++.|+++.
T Consensus       268 ~G----~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG  327 (369)
T PF02239_consen  268 QG----GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDG  327 (369)
T ss_dssp             SS----SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTS
T ss_pred             CC----Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCC
Confidence            21    33 788889999999874     357899999999988888753     8899998763

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=5.4e-10  Score=121.78  Aligned_cols=227  Identities=10%  Similarity=0.046  Sum_probs=139.4

Q ss_pred             cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCC
Q 005342          415 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSS  493 (701)
Q Consensus       415 ~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~  493 (701)
                      .+.++|..    ......+.    .+...+.+..|||||+.|+..+. ++...+|                   ++|..+
T Consensus       199 ~l~i~d~d----G~~~~~l~----~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~-------------------~~dl~t  251 (448)
T PRK04792        199 QLMIADYD----GYNEQMLL----RSPEPLMSPAWSPDGRKLAYVSFENRKAEIF-------------------VQDIYT  251 (448)
T ss_pred             EEEEEeCC----CCCceEee----cCCCcccCceECCCCCEEEEEEecCCCcEEE-------------------EEECCC
Confidence            56666765    33333322    24567889999999999887765 3443333                   225455


Q ss_pred             CeEEeecccCCCCCCeEEEEec--CCEEEEE-e-CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC-C
Q 005342          494 KLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D  565 (701)
Q Consensus       494 ~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~-s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~-d  565 (701)
                      ++...  +. .........+|+  |+.|+.. + +|  .|+++|+.+++.. .+..+.......+|+||| .++..+. +
T Consensus       252 g~~~~--lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~  327 (448)
T PRK04792        252 QVREK--VT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERG  327 (448)
T ss_pred             CCeEE--ec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCC
Confidence            54321  11 112233467888  7777654 3 55  5888899877643 444455556788999999 6665543 3


Q ss_pred             C--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342          566 S--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV  640 (701)
Q Consensus       566 g--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v  640 (701)
                      +  .|+++|+.+++... +..+.......+|+|||++|+..+.+ +  .|.++|+.+++..   .+.   .+.     ..
T Consensus       328 g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~---~lt---~~~-----~d  395 (448)
T PRK04792        328 GKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ---VLT---STR-----LD  395 (448)
T ss_pred             CCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE---Ecc---CCC-----CC
Confidence            3  57888888776543 22122223457899999988776553 3  5677888887422   222   111     12


Q ss_pred             EEEEEcCCCCEEEEE--ecC--eEEEEECCCCceeeeeee----eeEEEEEee
Q 005342          641 NHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       641 ~~v~~spdg~~l~sg--~Dg--~I~iwd~~~g~~~~~l~~----i~~~~fs~~  685 (701)
                      ....|+|||++|+..  .++  .+++++. +|+..+.++.    ++..+|||.
T Consensus       396 ~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        396 ESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence            245799999998863  333  3778887 5666665643    777888863

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.30  E-value=2.2e-10  Score=111.32  Aligned_cols=272  Identities=11%  Similarity=0.088  Sum_probs=173.4

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCC------------CCCEEEEEEecCCC--EEEEEE
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSF------------GGRVVRLIYSHSGD--FLVALT  460 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~------------~~~v~~l~~spdg~--~l~s~s  460 (701)
                      |.++.|..+|.+||+|..+|.|.++.-..... ++. .+.-.+..|            ...|..+.|.+++.  .++..+
T Consensus        28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey-~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEY-NFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             eeeEEeecccceEeecCCCCeEEEeecccccc-cce-eeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            88999999999999999999999998654332 111 111111112            35688899998765  567778


Q ss_pred             CCCcEEEEecCCCCc-ccccc---------ccceeeEEeeCCCCeE---EeecccCCCCCCeEEEEec--CCEEEEEeCC
Q 005342          461 QTATHKLWKWQSNKQ-SLEEE---------NVNMESQLYQPSSKLV---MTNDIAADPKDSISCFALR--GSHLFSASGG  525 (701)
Q Consensus       461 ~dg~i~vwd~~~~~~-~~g~~---------~~~~~i~~~d~~~~~~---~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg  525 (701)
                      .|.++++|.+..... ..|..         +.+..+.+..+..-.+   ..+.+...|...|.+++++  ++.++++.|=
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL  185 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL  185 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce
Confidence            899999999865443 11110         0011111111111110   1112334788899999998  7888898899


Q ss_pred             eEEEEeCCCCc-E--EEEecCC-----CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE----E-----------
Q 005342          526 KISIFSLETFQ-T--LATFANP-----PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK----A-----------  580 (701)
Q Consensus       526 ~I~iwd~~~~~-~--~~~~~~~-----~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~----~-----------  580 (701)
                      .|.+|+++--. .  +.-++++     ...|++..|+|..  .++-.+..|+|++-|++...+-    +           
T Consensus       186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r  265 (433)
T KOG1354|consen  186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR  265 (433)
T ss_pred             eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence            99999986332 1  2222323     3457899999998  8888899999999999843210    0           


Q ss_pred             -eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe-eeeeeeeeeccCCC------CCCCCCeEEEEEcCCCCEE
Q 005342          581 -KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK-KLCSKFLHSFQTGL------VPETTIVNHIQFHPDQIHL  652 (701)
Q Consensus       581 -~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~-~~~~~~l~~~~~~~------~~~~~~v~~v~~spdg~~l  652 (701)
                       -+.+--..|..+.|+++|+|+++-+. -+|++||+.... +....+++......      ...-..-..++|+-++.++
T Consensus       266 sffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v  344 (433)
T KOG1354|consen  266 SFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV  344 (433)
T ss_pred             hhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceE
Confidence             11112246889999999999987654 699999996532 22222221100000      0000122568899999999


Q ss_pred             EEE-ecCeEEEEECCCCc
Q 005342          653 LSI-HEGQIDVYEAPTLN  669 (701)
Q Consensus       653 ~sg-~Dg~I~iwd~~~g~  669 (701)
                      ++| ..+.+++++...|.
T Consensus       345 ~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  345 MTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             ecccccceEEEecCCCCc
Confidence            997 68889999976654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.30  E-value=8.6e-10  Score=120.14  Aligned_cols=215  Identities=15%  Similarity=0.120  Sum_probs=138.8

Q ss_pred             CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEEEecCCCCccccccccceeeEEee
Q 005342          414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQ  490 (701)
Q Consensus       414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~~~g~~~~~~~i~~~d  490 (701)
                      ..|.++|..    ......+.    .+...+.+..|+|||++++.++.+   ..|.+||+                    
T Consensus       170 ~~l~~~d~~----g~~~~~l~----~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~--------------------  221 (417)
T TIGR02800       170 YELQVADYD----GANPQTIT----RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDL--------------------  221 (417)
T ss_pred             ceEEEEcCC----CCCCEEee----cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEEC--------------------
Confidence            457777764    33333333    245568889999999999887753   35666644                    


Q ss_pred             CCCCeEEeecccCCCCCCeEEEEec--CCEEEEE-e-C--CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe
Q 005342          491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF  563 (701)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~-s-d--g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs  563 (701)
                       .++....  + ..+...+.+++|+  |+.|+.. + +  ..|++||+.++... .+..+........|+||| .|+..+
T Consensus       222 -~~g~~~~--~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s  296 (417)
T TIGR02800       222 -ATGQREK--V-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTS  296 (417)
T ss_pred             -CCCCEEE--e-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEE
Confidence             5554321  1 1234456678888  7766543 3 3  46999999877543 344344445678999999 776655


Q ss_pred             CC-C--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342          564 DD-S--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPET  637 (701)
Q Consensus       564 ~d-g--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~  637 (701)
                      .. +  .|+++|+.+++.. .+..+...+....|+|+|++++.++.++   .|++||+.++..   ..+.    ..    
T Consensus       297 ~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~l~----~~----  364 (417)
T TIGR02800       297 DRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RVLT----DT----  364 (417)
T ss_pred             CCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EEcc----CC----
Confidence            43 3  6888998877643 3444555677889999999999888776   899999988642   2222    11    


Q ss_pred             CCeEEEEEcCCCCEEEEE-e-cC--eEEEEECCCCceeeee
Q 005342          638 TIVNHIQFHPDQIHLLSI-H-EG--QIDVYEAPTLNHTSQV  674 (701)
Q Consensus       638 ~~v~~v~~spdg~~l~sg-~-Dg--~I~iwd~~~g~~~~~l  674 (701)
                      .......|+|||++|+.+ . ++  .+++.+. +|+....+
T Consensus       365 ~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~  404 (417)
T TIGR02800       365 GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARL  404 (417)
T ss_pred             CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence            223456899999988874 3 22  4666665 45544444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.30  E-value=1.1e-10  Score=128.68  Aligned_cols=190  Identities=12%  Similarity=0.092  Sum_probs=142.7

Q ss_pred             CEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeE--EE---Eec--
Q 005342          443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS--CF---ALR--  515 (701)
Q Consensus       443 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~--~l---~~s--  515 (701)
                      .+....+.-+.+.++.++.++.+.+||.                     ..+.+..+ +  .+.....  +.   ..+  
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~---------------------~~~~~~~~-i--~~~er~~l~~~~~~g~s~~  144 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDS---------------------KNSSVLSK-I--QSDERCTLYSSLIIGDSAE  144 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEec---------------------ccCceehh-c--CCCceEEEEeEEEEeccCc
Confidence            3444555666778899999999999965                     33333322 1  1222111  11   112  


Q ss_pred             CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-eecCCCCCeEEE
Q 005342          516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCL  592 (701)
Q Consensus       516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~v  592 (701)
                      .-++++|+ -+.|.+|+.........+.+|.+.|.++.++-|| ++++.|+|.++++|++.+++... +.-||+.+|+.+
T Consensus       145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~  224 (967)
T KOG0974|consen  145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC  224 (967)
T ss_pred             EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence            33677777 7999999987433333578999999999999999 99999999999999999988766 666799999999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       593 ~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      +|.|+  .++|++.|.+.++|+....      .+..+. +|..  ..+..++..++...++++ .|+.+++||..+
T Consensus       225 ~~~~n--~i~t~gedctcrvW~~~~~------~l~~y~-~h~g--~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  225 CFLPN--RIITVGEDCTCRVWGVNGT------QLEVYD-EHSG--KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             Eeccc--eeEEeccceEEEEEecccc------eehhhh-hhhh--cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99998  8999999999999976652      233233 4443  789999999998888885 999999999854

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.5e-09  Score=117.35  Aligned_cols=217  Identities=14%  Similarity=0.092  Sum_probs=130.8

Q ss_pred             eEEEEEcCCCCeEE---EEcCCC--cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEE
Q 005342          395 SRESTSLPDADSAV---CAKSLE--KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLW  468 (701)
Q Consensus       395 V~~l~~spdg~~l~---s~s~d~--~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vw  468 (701)
                      +.+.+|||||+.++   +...++  .|.+.++.    +++...+..    ..+.....+|||||+.|+..+. +|...+|
T Consensus       187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~----~g~~~~lt~----~~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLE----NPAGKKILA----LQGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             cccceEccCCCceEEEEEEccCCCceEEEEECC----CCCceEeec----CCCCccceEECCCCCEEEEEECCCCCccee
Confidence            45678999998532   444444  46666776    555455442    2344556899999999887664 3432232


Q ss_pred             ecCCCCccccccccceeeEEeeCCC---CeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCe--EEEEeCCC-CcEE
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSS---KLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGK--ISIFSLET-FQTL  538 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~--I~iwd~~~-~~~~  538 (701)
                                       +..|+..+   +....  +...+.......+|+  |+.|+..+  +|.  |+++++.. +...
T Consensus       259 -----------------~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~  319 (428)
T PRK01029        259 -----------------IQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP  319 (428)
T ss_pred             -----------------EEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence                             11123332   22111  111222334567888  78777665  454  55555542 2334


Q ss_pred             EEecCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC---CCeEE
Q 005342          539 ATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLC  611 (701)
Q Consensus       539 ~~~~~~~~~i~~l~~spdg-~l~~gs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~---D~~I~  611 (701)
                      ..+......+....||||| .|+..+.+   ..|++||+.+++... +......+....|+|||++|+..+.   ...|+
T Consensus       320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELY  398 (428)
T ss_pred             EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            4454445567789999999 77665443   379999999887654 3333345678899999998875443   45799


Q ss_pred             EEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342          612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ  649 (701)
Q Consensus       612 vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg  649 (701)
                      +||+.+++..   .+.   .+.    +.+...+|+|-.
T Consensus       399 ~vdl~~g~~~---~Lt---~~~----g~~~~p~Ws~~~  426 (428)
T PRK01029        399 LISLITKKTR---KIV---IGS----GEKRFPSWGAFP  426 (428)
T ss_pred             EEECCCCCEE---Eee---cCC----CcccCceecCCC
Confidence            9999887532   222   121    456778888754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.29  E-value=7.3e-10  Score=115.52  Aligned_cols=190  Identities=13%  Similarity=0.129  Sum_probs=143.6

Q ss_pred             cCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEe------c--------------CCCEEEEEE
Q 005342          401 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS------H--------------SGDFLVALT  460 (701)
Q Consensus       401 spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~s------p--------------dg~~l~s~s  460 (701)
                      .|-+.++|....||.+++|++.    .++.+.-..|...-.+..++..|.      |              |...++-|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~----~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTA----KNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             CchhheEeecCCCCeEEEEEcc----CceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            3556799999999999999998    555443111222233445555553      1              222455555


Q ss_pred             CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE
Q 005342          461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT  537 (701)
Q Consensus       461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~  537 (701)
                      ..|.|.+|                     +...|++..+.....|.+.|.++.++  -..|.+++ |+.+..|+..+...
T Consensus        78 ~~g~v~~y---------------------s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~  136 (541)
T KOG4547|consen   78 PQGSVLLY---------------------SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI  136 (541)
T ss_pred             CCccEEEE---------------------EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence            56777766                     55666655543436899999999988  66788888 99999999999999


Q ss_pred             EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecC-----CCEEEE-EeCCCeE
Q 005342          538 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-----LNVLVS-SGADAQL  610 (701)
Q Consensus       538 ~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spd-----g~~l~s-~s~D~~I  610 (701)
                      +..+.+.+..+.+++++||| .+++++  +.|.+||+++++.+.+|.||.++|+++.|.-+     |.++.+ ...+.-|
T Consensus       137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i  214 (541)
T KOG4547|consen  137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI  214 (541)
T ss_pred             eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence            99999888899999999999 888876  58999999999999999999999999999876     666554 4456667


Q ss_pred             EEEECCC
Q 005342          611 CVWDAVG  617 (701)
Q Consensus       611 ~vwd~~~  617 (701)
                      .+|-+..
T Consensus       215 ~~w~v~~  221 (541)
T KOG4547|consen  215 TVWVVEK  221 (541)
T ss_pred             eEEEEEc
Confidence            8887665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=1.5e-09  Score=118.53  Aligned_cols=225  Identities=14%  Similarity=0.047  Sum_probs=141.0

Q ss_pred             cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-C--cEEEEecCCCCccccccccceeeEEeeC
Q 005342          415 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-A--THKLWKWQSNKQSLEEENVNMESQLYQP  491 (701)
Q Consensus       415 ~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g--~i~vwd~~~~~~~~g~~~~~~~i~~~d~  491 (701)
                      .+.++|.+    ++....+.    .+...+....|||||+.|+..+.+ +  .|.+|                     +.
T Consensus       180 ~l~~~d~~----g~~~~~l~----~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~---------------------~l  230 (430)
T PRK00178        180 TLQRSDYD----GARAVTLL----QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQ---------------------NL  230 (430)
T ss_pred             EEEEECCC----CCCceEEe----cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEE---------------------EC
Confidence            46666765    33333332    245678999999999999887653 3  45555                     44


Q ss_pred             CCCeEEeecccCCCCCCeEEEEec--CCEEEEE-e-CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC
Q 005342          492 SSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD  564 (701)
Q Consensus       492 ~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~-s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~  564 (701)
                      .++....  + ....+.+...+|+  |+.++.. + +|  .|++||+.+++.. .+..+........|+||| .++..+.
T Consensus       231 ~~g~~~~--l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~  306 (430)
T PRK00178        231 DTGRREQ--I-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSD  306 (430)
T ss_pred             CCCCEEE--c-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEEC
Confidence            5554322  1 1223344567888  7777643 3 44  7899999887654 444455556778999999 6665554


Q ss_pred             -CC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCeeeeeeeeeeccCCCCCCCC
Q 005342          565 -DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETT  638 (701)
Q Consensus       565 -dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~  638 (701)
                       +|  .|+++|+.+++... +...........|+|||++++..+.+ +  .|.+||+.+++.   ..+.   ..     .
T Consensus       307 ~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~---~~lt---~~-----~  374 (430)
T PRK00178        307 RGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV---RILT---DT-----S  374 (430)
T ss_pred             CCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE---EEcc---CC-----C
Confidence             33  68888988876543 22122233457899999998877653 2  588999998752   2222   11     1


Q ss_pred             CeEEEEEcCCCCEEEEE-e-c--CeEEEEECCCCceeeeee---e-eeEEEEEee
Q 005342          639 IVNHIQFHPDQIHLLSI-H-E--GQIDVYEAPTLNHTSQVL---L-ISHIMFVQI  685 (701)
Q Consensus       639 ~v~~v~~spdg~~l~sg-~-D--g~I~iwd~~~g~~~~~l~---~-i~~~~fs~~  685 (701)
                      ......|+|||++++.+ . +  ..+.++++. |...+.++   + +...+|||.
T Consensus       375 ~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        375 LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            12356899999999864 2 3  347788874 44443443   2 677777763

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.5e-09  Score=118.55  Aligned_cols=211  Identities=10%  Similarity=0.042  Sum_probs=130.8

Q ss_pred             eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-TQTATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~  470 (701)
                      +...+|+|||+.|+..+.+   ..|.+|++.    +++...+..    ..+.+....|+|||+.|+.. +.+|...+|  
T Consensus       201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~----~g~~~~l~~----~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy--  270 (430)
T PRK00178        201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD----TGRREQITN----FEGLNGAPAWSPDGSKLAFVLSKDGNPEIY--  270 (430)
T ss_pred             eeeeeECCCCCEEEEEEcCCCCCEEEEEECC----CCCEEEccC----CCCCcCCeEECCCCCEEEEEEccCCCceEE--
Confidence            7889999999999876543   368888987    565544331    23345578999999988754 445543333  


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--C--CeEEEEeCCCCcEEEEecCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANP  544 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--d--g~I~iwd~~~~~~~~~~~~~  544 (701)
                                       ++|..++....  + ..+........|+  |+.++..+  +  ..|+++|+.+++..+. ...
T Consensus       271 -----------------~~d~~~~~~~~--l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~  329 (430)
T PRK00178        271 -----------------VMDLASRQLSR--V-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFV  329 (430)
T ss_pred             -----------------EEECCCCCeEE--c-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecC
Confidence                             22545554332  2 1233445567788  77776655  3  3688889887764332 212


Q ss_pred             CCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCC
Q 005342          545 PPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVG  617 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~  617 (701)
                      ........|+||| .++..+. ++  .|++||+.+++... +.. ........|+|||++++..+.+   ..++++++..
T Consensus       330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            2334567899999 6666554 33  58899998876533 332 2223356899999988876643   3578888865


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd  648 (701)
                      +..   ..   +. .+.   +.+...+|+|-
T Consensus       408 ~~~---~~---l~-~~~---g~~~~p~ws~~  428 (430)
T PRK00178        408 RVR---LP---LP-TAQ---GEVREPSWSPY  428 (430)
T ss_pred             Cce---EE---Cc-CCC---CCcCCCccCCC
Confidence            421   12   22 111   45677778873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.25  E-value=1.7e-09  Score=117.90  Aligned_cols=191  Identities=12%  Similarity=0.051  Sum_probs=125.5

Q ss_pred             CCc-eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE-ECCCc--
Q 005342          392 NNQ-SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-TQTAT--  464 (701)
Q Consensus       392 h~~-V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~--  464 (701)
                      +.. +.+.+|+|||++|+.++.+   ..|.+|++.    +++...+..    +...+.+++|+|||+.|+.. +.++.  
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~----~g~~~~~~~----~~~~~~~~~~spDg~~l~~~~~~~~~~~  259 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLA----TGQREKVAS----FPGMNGAPAFSPDGSKLAVSLSKDGNPD  259 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECC----CCCEEEeec----CCCCccceEECCCCCEEEEEECCCCCcc
Confidence            344 7788999999999987643   479999997    554444331    34556678999999987754 44444  


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--C--CeEEEEeCCCCcEE
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTL  538 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--d--g~I~iwd~~~~~~~  538 (701)
                      |.+||                     ..++....  + ..+........|+  |+.|+..+  +  ..|+++|+.+++..
T Consensus       260 i~~~d---------------------~~~~~~~~--l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~  315 (417)
T TIGR02800       260 IYVMD---------------------LDGKQLTR--L-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR  315 (417)
T ss_pred             EEEEE---------------------CCCCCEEE--C-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            55554                     44444322  2 1233334456777  77777665  2  36888898776643


Q ss_pred             EEecCCCCCeEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---eEE
Q 005342          539 ATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLC  611 (701)
Q Consensus       539 ~~~~~~~~~i~~l~~spdg-~l~~gs~dg---~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~  611 (701)
                       .+..+......+.|+|+| +++.++.++   .|++||+.++.. ..+... .......|+|||++|+.++.++   .++
T Consensus       316 -~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~  392 (417)
T TIGR02800       316 -RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLG  392 (417)
T ss_pred             -EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence             344345566788999999 888777765   899999987654 333322 2345568999999888776654   456


Q ss_pred             EEECCC
Q 005342          612 VWDAVG  617 (701)
Q Consensus       612 vwd~~~  617 (701)
                      +.+...
T Consensus       393 ~~~~~g  398 (417)
T TIGR02800       393 LVSTDG  398 (417)
T ss_pred             EEECCC
Confidence            666544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=1e-09  Score=113.47  Aligned_cols=229  Identities=14%  Similarity=0.128  Sum_probs=151.8

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |...-.+-|-..++.-..|.+|.+..-     .|....+.+|     ..-..++++.-.--|+.++....|+-.      
T Consensus        97 V~feiLsDD~SK~v~L~~DR~IefHak-----~G~hy~~RIP-----~~GRDm~y~~~scDly~~gsg~evYRl------  160 (703)
T KOG2321|consen   97 VDFEILSDDYSKSVFLQNDRTIEFHAK-----YGRHYRTRIP-----KFGRDMKYHKPSCDLYLVGSGSEVYRL------  160 (703)
T ss_pred             eeEEEeccchhhheEeecCceeeehhh-----cCeeeeeecC-----cCCccccccCCCccEEEeecCcceEEE------
Confidence            444445556555555566677766544     3444444442     223445555333334444544455555      


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec------CCC
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA------NPP  545 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~------~~~  545 (701)
                                     +++.|..+.. + ....+.++++.++  ..+|++|+ +|.|-.||.++...+.++.      .|.
T Consensus       161 ---------------NLEqGrfL~P-~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~p  223 (703)
T KOG2321|consen  161 ---------------NLEQGRFLNP-F-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHP  223 (703)
T ss_pred             ---------------Eccccccccc-c-ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCc
Confidence                           4466665532 2 2334788999998  77888888 9999999998876655543      222


Q ss_pred             -----CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECC
Q 005342          546 -----PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       546 -----~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~spd--g~~l~s~s~D~~I~vwd~~  616 (701)
                           ..|+++.|+.+| .+++|+.+|.++|||+++.+++..-. +..-+|..+.|.+.  ++.++|. +...++|||-.
T Consensus       224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~  302 (703)
T KOG2321|consen  224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDEC  302 (703)
T ss_pred             cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccc
Confidence                 248999999999 99999999999999999988765433 23348999999874  4455544 45688999999


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      +|+....  +.     .+   ..++.+++-|++-+++++ .++.+..|=+..
T Consensus       303 ~Gk~~as--iE-----pt---~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  303 TGKPMAS--IE-----PT---SDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             cCCceee--cc-----cc---CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            9864321  11     11   668999999999888887 555566555544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.23  E-value=4e-08  Score=103.65  Aligned_cols=247  Identities=15%  Similarity=0.155  Sum_probs=154.1

Q ss_pred             CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC----CCcEEEEecCCCCccccccccceeeEEe
Q 005342          414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLY  489 (701)
Q Consensus       414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~----dg~i~vwd~~~~~~~~g~~~~~~~i~~~  489 (701)
                      +.|..|+++.  ..+....+..  .........++++|++++|.++..    +|.|..|.+                   
T Consensus        13 ~gI~~~~~d~--~~g~l~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i-------------------   69 (345)
T PF10282_consen   13 GGIYVFRFDE--ETGTLTLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRI-------------------   69 (345)
T ss_dssp             TEEEEEEEET--TTTEEEEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEE-------------------
T ss_pred             CcEEEEEEcC--CCCCceEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEE-------------------
Confidence            7888888842  1444333221  012456677899999999999877    468888876                   


Q ss_pred             eCCCCeEEe-ecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCC-CcEEEE---ec----------CCCCCeEE
Q 005342          490 QPSSKLVMT-NDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT---FA----------NPPPIATY  550 (701)
Q Consensus       490 d~~~~~~~~-~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~-~~~~~~---~~----------~~~~~i~~  550 (701)
                      +.+++.+.. .... ........++++  +++++++.  +|.|.++++.. +.....   +.          .......+
T Consensus        70 ~~~~g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~  148 (345)
T PF10282_consen   70 DPDTGTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ  148 (345)
T ss_dssp             ETTTTEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred             CCCcceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence            545455321 1111 123345578887  88888887  79999999976 433222   21          12345689


Q ss_pred             EEEcCCC-eEEEE-eCCCcEEEEeCCCCc--eE--EeecC-CCCCeEEEEEecCCCEEEEE-eCCCeEEEEECC--CCee
Q 005342          551 FILLPQD-LFAFG-FDDSSILVHCPCTKK--TK--AKLKG-HQNRITCLAYSLSLNVLVSS-GADAQLCVWDAV--GWKK  620 (701)
Q Consensus       551 l~~spdg-~l~~g-s~dg~I~iwd~~~~~--~~--~~l~~-h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~--~g~~  620 (701)
                      +.++|+| ++++. .....|++|++....  +.  ..+.. .......++|+|++++++.. -.+++|.++++.  .|..
T Consensus       149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~  228 (345)
T PF10282_consen  149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL  228 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence            9999999 55554 344589999987654  32  22222 33467899999999977655 457889999998  6654


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC--CCce--eeeeee----eeEEEEEee
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNH--TSQVLL----ISHIMFVQI  685 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~--~g~~--~~~l~~----i~~~~fs~~  685 (701)
                      .....+..++.+.. .......+.++|||++|+++  .+++|.+|++.  +|++  +..++.    ..+++++|+
T Consensus       229 ~~~~~~~~~~~~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~  302 (345)
T PF10282_consen  229 TEIQTISTLPEGFT-GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD  302 (345)
T ss_dssp             EEEEEEESCETTSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred             eEEEEeeecccccc-ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence            44444443433222 11367899999999999986  57889999993  3443  333332    667777765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=2.9e-09  Score=116.12  Aligned_cols=210  Identities=12%  Similarity=0.031  Sum_probs=128.4

Q ss_pred             eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-TQTATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~  470 (701)
                      +.+..|+|||+.|+..+.+   ..|.+||+.    +++...+..    ..+.....+|+|||+.|+.. +.+|...+|- 
T Consensus       220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~----tg~~~~lt~----~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~-  290 (448)
T PRK04792        220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIY----TQVREKVTS----FPGINGAPRFSPDGKKLALVLSKDGQPEIYV-  290 (448)
T ss_pred             ccCceECCCCCEEEEEEecCCCcEEEEEECC----CCCeEEecC----CCCCcCCeeECCCCCEEEEEEeCCCCeEEEE-
Confidence            6778999999999876543   257788886    555444331    12334468999999988754 5567655552 


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--C--CeEEEEeCCCCcEEEEecCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANP  544 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--d--g~I~iwd~~~~~~~~~~~~~  544 (701)
                                        +|..+++...  + ..+.......+|+  |+.++..+  +  ..|+++|+.+++.... ...
T Consensus       291 ------------------~dl~tg~~~~--l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~  348 (448)
T PRK04792        291 ------------------VDIATKALTR--I-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFE  348 (448)
T ss_pred             ------------------EECCCCCeEE--C-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecC
Confidence                              2556655432  2 1233455677888  77776655  3  3677888877765432 212


Q ss_pred             CCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCC
Q 005342          545 PPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-A--QLCVWDAVG  617 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-~--~I~vwd~~~  617 (701)
                      .......+|+||| +++..+. ++  .|.++|+.+++... +... .......|+|||++|+..+.+ +  .+++++...
T Consensus       349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG  426 (448)
T ss_pred             CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            2233457899999 6655444 44  56778888876533 3322 122345899999988765543 3  478888754


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcC
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHP  647 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp  647 (701)
                      +.   ...   +..+ .   +.+...+|+|
T Consensus       427 ~~---~~~---l~~~-~---g~~~~p~Wsp  446 (448)
T PRK04792        427 RF---KAR---LPAG-Q---GEVKSPAWSP  446 (448)
T ss_pred             Cc---eEE---CcCC-C---CCcCCCccCC
Confidence            32   122   2212 1   5567788887

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.23  E-value=2.9e-08  Score=102.33  Aligned_cols=265  Identities=14%  Similarity=0.090  Sum_probs=157.7

Q ss_pred             CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcC----------
Q 005342          343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS----------  412 (701)
Q Consensus       343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~----------  412 (701)
                      .++|.+-|..+++.+..+          +.-               ...|    .+ +||||+.++.+..          
T Consensus        26 ~~~v~ViD~~~~~v~g~i----------~~G---------------~~P~----~~-~spDg~~lyva~~~~~R~~~G~~   75 (352)
T TIGR02658        26 TTQVYTIDGEAGRVLGMT----------DGG---------------FLPN----PV-VASDGSFFAHASTVYSRIARGKR   75 (352)
T ss_pred             CceEEEEECCCCEEEEEE----------Ecc---------------CCCc----ee-ECCCCCEEEEEeccccccccCCC
Confidence            388999999988877663          110               0111    23 9999998887765          


Q ss_pred             CCcEEEEeccccCCCCce-eEeecCCCCC---CCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceee
Q 005342          413 LEKSVNLKLQLINEPSEC-RTLLLPDNSF---GGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMES  486 (701)
Q Consensus       413 d~~v~iw~~~~~~~~~~~-~~l~~~~~~~---~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i  486 (701)
                      +..|.+||..+    .+. ..+.++...+   ......++++|||+++++...  ++.+.+.|+                
T Consensus        76 ~d~V~v~D~~t----~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~----------------  135 (352)
T TIGR02658        76 TDYVEVIDPQT----HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDL----------------  135 (352)
T ss_pred             CCEEEEEECcc----CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEEC----------------
Confidence            78999999984    332 2333322111   233457889999999887763  688888865                


Q ss_pred             EEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCC-CcE-EE---EecCCCCCe-EEEEEcC-CC-
Q 005342          487 QLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQT-LA---TFANPPPIA-TYFILLP-QD-  557 (701)
Q Consensus       487 ~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~-~~~-~~---~~~~~~~~i-~~l~~sp-dg-  557 (701)
                           .+++++.. +..  .+...-+..+ ...++-+.||......+.+ |+. ..   .+.+...++ ..-.+.+ +| 
T Consensus       136 -----~~~kvv~e-i~v--p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~  207 (352)
T TIGR02658       136 -----EGKAFVRM-MDV--PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR  207 (352)
T ss_pred             -----CCCcEEEE-EeC--CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence                 44444322 111  1111122222 3333333354443333221 221 11   111111111 0114455 77 


Q ss_pred             eEEEEeCCCcEEEEeCCC-----CceEEeecC-------CCCCeEEEEEecCCCEEEEEe----------CCCeEEEEEC
Q 005342          558 LFAFGFDDSSILVHCPCT-----KKTKAKLKG-------HQNRITCLAYSLSLNVLVSSG----------ADAQLCVWDA  615 (701)
Q Consensus       558 ~l~~gs~dg~I~iwd~~~-----~~~~~~l~~-------h~~~V~~v~~spdg~~l~s~s----------~D~~I~vwd~  615 (701)
                      .+.+..+ |+|++.|+..     .+....+..       ..+.+.-++++|+++.+....          ..+.|.++|.
T Consensus       208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~  286 (352)
T TIGR02658       208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA  286 (352)
T ss_pred             EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence            6666666 9999999643     333333221       233455699999998777642          2258999999


Q ss_pred             CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE--ecCeEEEEECCCCceeeeeee
Q 005342          616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI--HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg--~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      .+++.+.     .+..+     ..+.+++++||++ +|++.  .++.|.++|..+++.++++..
T Consensus       287 ~t~kvi~-----~i~vG-----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~  340 (352)
T TIGR02658       287 KTGKRLR-----KIELG-----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ  340 (352)
T ss_pred             CCCeEEE-----EEeCC-----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence            9975433     23334     5689999999999 77763  688899999999999998843

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.22  E-value=7.4e-10  Score=107.90  Aligned_cols=220  Identities=15%  Similarity=0.236  Sum_probs=150.5

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      ++||.+ |+....-|...-+++.+.|.++++|--.+   .++.+. ++ ....+.+++++.+.++...|++|-.+|++.-
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrd---s~q~wp-sI-~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRD---SGQYWP-SI-YHYMPSPCSAMEYVSESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccceeeeEEecc---ccccCc-hh-hhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence            567888 88888889889999999999999997553   444433 10 1124678999999999999999999999988


Q ss_pred             EecCCCCc------cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEE--ec---CCEEEE---------------
Q 005342          468 WKWQSNKQ------SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA--LR---GSHLFS---------------  521 (701)
Q Consensus       468 wd~~~~~~------~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~--~s---~~~l~s---------------  521 (701)
                      +.+...-.      ..-.....+...+++.....++..    ++...+.-.+  +.   |.++..               
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~----~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fv  170 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLST----GKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFV  170 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEe----ccccceEEEeeccCCcccceEeeccCCCCceeeEEEEe
Confidence            86533211      011112222344455444444332    2222111111  11   333322               


Q ss_pred             Ee-CCeEEEEeC--CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-eEEeecCCCCCeEEEEEec
Q 005342          522 AS-GGKISIFSL--ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSL  596 (701)
Q Consensus       522 ~s-dg~I~iwd~--~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~v~~sp  596 (701)
                      |. .|.|....+  ..-..+.++.+|...+++++|.|.. .+.+|..|..+.+||+..++ ....+.+|...|..+..-+
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~  250 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ  250 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence            22 233333322  2334677888999999999999999 99999999999999987543 4567788999999998888


Q ss_pred             CCCEEEEEeCCCeEEEEECCC
Q 005342          597 SLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       597 dg~~l~s~s~D~~I~vwd~~~  617 (701)
                      .-+.+.+++.||.|-+||++.
T Consensus       251 ~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  251 HTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hheeeeeccCCCeEEEEeccc
Confidence            888999999999999999864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.3e-07  Score=93.69  Aligned_cols=257  Identities=12%  Similarity=0.092  Sum_probs=158.8

Q ss_pred             eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~  470 (701)
                      ++-++|+|+++.|.++..+   |.|.-|.++.  ..|....+.. ......+-..++.+++|++++++.. .|.|.++.+
T Consensus        42 ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~--~~G~Lt~ln~-~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~  118 (346)
T COG2706          42 PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP--DDGRLTFLNR-QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL  118 (346)
T ss_pred             CceEEECCCCCEEEEEEecCCcCcEEEEEEcC--CCCeEEEeec-cccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence            7789999999999988654   7787777762  1244444331 1112334488999999999999887 589999977


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEec---C
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFA---N  543 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~---~  543 (701)
                      +..    |.....+.. +.+...+ ...    ......+.+..+.  ++++++.+  -..|.+|++..|+....-.   .
T Consensus       119 ~~d----G~l~~~v~~-~~h~g~~-p~~----rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~  188 (346)
T COG2706         119 QAD----GSLQPVVQV-VKHTGSG-PHE----RQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK  188 (346)
T ss_pred             ccC----Cccccceee-eecCCCC-CCc----cccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC
Confidence            442    111110000 0000000 000    0011125666777  88888887  3789999998776432211   2


Q ss_pred             CCCCeEEEEEcCCC-eE-EEEeCCCcEEEEeCCCC-ceEEeecC---------CCCCeEEEEEecCCCEEEEEeC-CCeE
Q 005342          544 PPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTK-KTKAKLKG---------HQNRITCLAYSLSLNVLVSSGA-DAQL  610 (701)
Q Consensus       544 ~~~~i~~l~~spdg-~l-~~gs~dg~I~iwd~~~~-~~~~~l~~---------h~~~V~~v~~spdg~~l~s~s~-D~~I  610 (701)
                      .....+.|+|+|++ +. +++=-+++|-+|..... ..+..++.         ...+..++..+|||++|.++.. ...|
T Consensus       189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI  268 (346)
T COG2706         189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI  268 (346)
T ss_pred             CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            45567999999999 44 44456889999988763 22222221         2346778899999999986643 3478


Q ss_pred             EEEECCC--CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEEC--CCCcee
Q 005342          611 CVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEA--PTLNHT  671 (701)
Q Consensus       611 ~vwd~~~--g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~--~~g~~~  671 (701)
                      -+|.+..  |++.   .+...+.+.    ..-+...|+|+|++|++.  .+.+|.+|.+  .+|++-
T Consensus       269 ~~f~V~~~~g~L~---~~~~~~teg----~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         269 AVFSVDPDGGKLE---LVGITPTEG----QFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             EEEEEcCCCCEEE---EEEEeccCC----cCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence            8887764  3321   122111121    335889999999999985  5566888877  456543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.19  E-value=5.4e-08  Score=96.46  Aligned_cols=229  Identities=11%  Similarity=0.064  Sum_probs=154.5

Q ss_pred             CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEEEecCCCCccccccccceeeEEe
Q 005342          413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLY  489 (701)
Q Consensus       413 d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~~~g~~~~~~~i~~~  489 (701)
                      ++.|.+|++.+.  .++...+.  .....+.++-++|+|+++.|.++..+   |.|..|.+                   
T Consensus        15 s~gI~v~~ld~~--~g~l~~~~--~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i-------------------   71 (346)
T COG2706          15 SQGIYVFNLDTK--TGELSLLQ--LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI-------------------   71 (346)
T ss_pred             CCceEEEEEeCc--ccccchhh--hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence            467999999732  22222211  12356788999999999999888764   67777755                   


Q ss_pred             eCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCC-CcE---EEEecCCCCC----------eEEE
Q 005342          490 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQT---LATFANPPPI----------ATYF  551 (701)
Q Consensus       490 d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~-~~~---~~~~~~~~~~----------i~~l  551 (701)
                      |..+|.+....-......+...++++  |++++++.  .|.|.++-++. |..   +..+. |...          +.+.
T Consensus        72 D~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a  150 (346)
T COG2706          72 DPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSA  150 (346)
T ss_pred             cCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee-cCCCCCCccccCCcccee
Confidence            76767643210111223344778888  88999998  59999999965 432   22222 3333          7888


Q ss_pred             EEcCCC-eEEEEeC-CCcEEEEeCCCCceEEeec---CCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCC--Ceeeee
Q 005342          552 ILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCS  623 (701)
Q Consensus       552 ~~spdg-~l~~gs~-dg~I~iwd~~~~~~~~~l~---~h~~~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~--g~~~~~  623 (701)
                      .+.|++ ++++..- --.|.+|++..|++...-.   .-....+.++|+|++++....++ +++|-+|....  |+....
T Consensus       151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l  230 (346)
T COG2706         151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL  230 (346)
T ss_pred             eeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence            999999 6665543 3389999999876533211   12345688999999998876655 89999999887  555555


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP  666 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~  666 (701)
                      ..+..++..-. .....-.|..+|||++|.++  ....|.++.+.
T Consensus       231 Q~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         231 QTIDTLPEDFT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eeeccCccccC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            55555554432 22567789999999999997  34578888874

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.18  E-value=1.2e-08  Score=104.55  Aligned_cols=302  Identities=10%  Similarity=0.005  Sum_probs=192.8

Q ss_pred             ccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCC
Q 005342          311 FPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSN  384 (701)
Q Consensus       311 iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~  384 (701)
                      +|+..+......+..-.-.+.  .++|||.      ..-..|.+|....+..+..+                        
T Consensus        16 f~~~~s~~~~~~~~~~~~p~~--~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~------------------------   69 (561)
T COG5354          16 FWNSQSEVIHTRFESENWPVA--YVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF------------------------   69 (561)
T ss_pred             eecCccccccccccccCcchh--heeecCcchheehhhccceEEccccchhheeee------------------------
Confidence            566555555555554444567  8899998      55677888877666544331                        


Q ss_pred             CCccccCCCceEEEEEcCCCCeEEEEcCCC---------------cEEEEeccccCCCCceeEeecCCCCCCCC--EE-E
Q 005342          385 DSSCFNDNNQSRESTSLPDADSAVCAKSLE---------------KSVNLKLQLINEPSECRTLLLPDNSFGGR--VV-R  446 (701)
Q Consensus       385 ~~~~l~~h~~V~~l~~spdg~~l~s~s~d~---------------~v~iw~~~~~~~~~~~~~l~~~~~~~~~~--v~-~  446 (701)
                            .|..|..+.|||+++||.+-+..+               .+.+||..    ++.+..   .+.....+  .+ -
T Consensus        70 ------~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~----sg~iv~---sf~~~~q~~~~Wp~  136 (561)
T COG5354          70 ------RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA----SGMIVF---SFNGISQPYLGWPV  136 (561)
T ss_pred             ------ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc----CceeEe---eccccCCcccccce
Confidence                  566688999999999999865433               48899997    665543   22222222  44 6


Q ss_pred             EEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEE
Q 005342          447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSA  522 (701)
Q Consensus       447 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~  522 (701)
                      +.|+-|.++.+-. ....+.|+++ +.                     .+....+..-....|....++    +..|+.-
T Consensus       137 ~k~s~~D~y~ARv-v~~sl~i~e~-t~---------------------n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~  193 (561)
T COG5354         137 LKFSIDDKYVARV-VGSSLYIHEI-TD---------------------NIEEHPFKNLRPVGILDFSISPEGNHDELAYW  193 (561)
T ss_pred             eeeeecchhhhhh-ccCeEEEEec-CC---------------------ccccCchhhccccceeeEEecCCCCCceEEEE
Confidence            7889888876544 3356888865 21                     111100111112456777777    2233432


Q ss_pred             -----e-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE----e-------CCCcEEEEeCCCCceEEeecC
Q 005342          523 -----S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG----F-------DDSSILVHCPCTKKTKAKLKG  584 (701)
Q Consensus       523 -----s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~g----s-------~dg~I~iwd~~~~~~~~~l~~  584 (701)
                           + .+.+++|.+..+..+.+..-....-..+.|.+.| ++++-    .       ....++|+++.... +....+
T Consensus       194 tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~  272 (561)
T COG5354         194 TPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKD  272 (561)
T ss_pred             ccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceecc
Confidence                 2 5789999998776665443233334678899998 43321    1       12468889887443 333335


Q ss_pred             CCCCeEEEEEecCCCEEEEE--eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E---ecC
Q 005342          585 HQNRITCLAYSLSLNVLVSS--GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEG  658 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l~s~--s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g---~Dg  658 (701)
                      -.++|...+|+|+++.++++  -.+..+.++|++..-     ... ++.      ..-+.+.|||.+++++. |   ..|
T Consensus       273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl-----~~~-~Pe------~~rNT~~fsp~~r~il~agF~nl~g  340 (561)
T COG5354         273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL-----RFY-FPE------QKRNTIFFSPHERYILFAGFDNLQG  340 (561)
T ss_pred             ccccceeeeecccCCceeEEecccccceeecccccce-----EEe-cCC------cccccccccCcccEEEEecCCcccc
Confidence            67899999999988866654  478899999999841     111 221      44578899999999887 5   367


Q ss_pred             eEEEEECCCCce-eeeeee--eeEEEEEeeEE
Q 005342          659 QIDVYEAPTLNH-TSQVLL--ISHIMFVQIVV  687 (701)
Q Consensus       659 ~I~iwd~~~g~~-~~~l~~--i~~~~fs~~~~  687 (701)
                      .+-+||...... +..+.+  .+.+.|||+.-
T Consensus       341 ni~i~~~~~rf~~~~~~~~~n~s~~~wspd~q  372 (561)
T COG5354         341 NIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQ  372 (561)
T ss_pred             ceEEeccCCceEEEEEeecCCceEeeccCCce
Confidence            899999965443 436666  66667887754

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.17  E-value=8e-09  Score=110.35  Aligned_cols=120  Identities=18%  Similarity=0.199  Sum_probs=95.3

Q ss_pred             eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE---------EeCCCeEEEEECCCCeeeeeeeeee
Q 005342          558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS---------SGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s---------~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      ++|.|+..|+|.++|+.++..-..+..|.+.|.++.|.....++-.         |+.-+.+.|-|+++|.   .+.++.
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGl---sk~fR~  515 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGL---SKRFRG  515 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccc---cccccc
Confidence            6889999999999999999999999999999999999766554422         2234568899999985   334442


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEE
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFV  683 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs  683 (701)
                      ++..   .+.+|+.+..|..|+|++.- .|.-+.+||+++..+++....    |+.+.|+
T Consensus       516 l~~~---despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWs  572 (1062)
T KOG1912|consen  516 LQKP---DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWS  572 (1062)
T ss_pred             CCCC---CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence            2222   23899999999999999996 899999999988887665544    8999998

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.16  E-value=2.6e-08  Score=100.91  Aligned_cols=158  Identities=12%  Similarity=0.044  Sum_probs=121.9

Q ss_pred             CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC-cEEEEeCCCCceEEeecCCCCCeEEEE
Q 005342          516 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLA  593 (701)
Q Consensus       516 ~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg-~I~iwd~~~~~~~~~l~~h~~~V~~v~  593 (701)
                      |++++..+-|...+.+...+-.++.  ++...|.-..+..++ -++.|..|| .+-|+|.++++. +.+.+.-+.|.++.
T Consensus       332 Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~  408 (668)
T COG4946         332 GDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVK  408 (668)
T ss_pred             CcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEE
Confidence            8888888888888877655554443  467778888888888 899999999 899999888765 44555668899999


Q ss_pred             EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-e----cCeEEEEECCCC
Q 005342          594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H----EGQIDVYEAPTL  668 (701)
Q Consensus       594 ~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~----Dg~I~iwd~~~g  668 (701)
                      .+|+|++++.+.+...|-+.|+.+|...   .+.   ...-   +-|+.+.|||+++++|-+ -    ...|+++|+.++
T Consensus       409 vs~dGK~~vvaNdr~el~vididngnv~---~id---kS~~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         409 VSPDGKKVVVANDRFELWVIDIDNGNVR---LID---KSEY---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             EcCCCcEEEEEcCceEEEEEEecCCCee---Eec---cccc---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence            9999999999999999999999998632   222   2222   779999999999999975 2    456999999988


Q ss_pred             ceeeeeee---eeEEEEEee
Q 005342          669 NHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       669 ~~~~~l~~---i~~~~fs~~  685 (701)
                      +....-..   -.+.+|.|+
T Consensus       480 Kiy~vTT~ta~DfsPaFD~d  499 (668)
T COG4946         480 KIYDVTTPTAYDFSPAFDPD  499 (668)
T ss_pred             eEEEecCCcccccCcccCCC
Confidence            87654443   344445444

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=9.6e-09  Score=108.62  Aligned_cols=259  Identities=8%  Similarity=0.035  Sum_probs=173.5

Q ss_pred             ceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE------e--ecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342          394 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT------L--LLPDNSFGGRVVRLIYSHSGDFLVALTQTATH  465 (701)
Q Consensus       394 ~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~------l--~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i  465 (701)
                      ...+++|+.+..++|+|+.||.+++-.+.+.....+...      +  .-+..+|...|.-+.|+.+.+.|-+...+|.|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            377999999999999999999999998875433222211      1  12345899999999999999888888889999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      .||-+                     -.|.-....+....++.|.+++|+  |..++... ||.|.+=.+...+ +.--.
T Consensus        96 iVWml---------------------ykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKe  153 (1189)
T KOG2041|consen   96 IVWML---------------------YKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKE  153 (1189)
T ss_pred             EEEee---------------------ecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchh
Confidence            99954                     222211000112345678889998  88888877 8887776664332 22111


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-------e-EE---eecCCCCCeEEEEEe--------cCCCEEE
Q 005342          543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-------T-KA---KLKGHQNRITCLAYS--------LSLNVLV  602 (701)
Q Consensus       543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~-------~-~~---~l~~h~~~V~~v~~s--------pdg~~l~  602 (701)
                      -.......+.|++|. .++.+-.+|.+++||....-       + +.   .+......|-.+.|.        ||...||
T Consensus       154 Lkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la  233 (1189)
T KOG2041|consen  154 LKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA  233 (1189)
T ss_pred             cchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE
Confidence            112234578999999 88888999999999965321       1 10   011111124455553        4778999


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-Eec---------CeEEEEECCCCceee
Q 005342          603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---------GQIDVYEAPTLNHTS  672 (701)
Q Consensus       603 s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~D---------g~I~iwd~~~g~~~~  672 (701)
                      .+-..|.+.|-.-.+..    .+.- +..|     -.+..+.|+|+|..||+ |.|         +.|.+|.. -|+.+.
T Consensus       234 vcy~nGr~QiMR~eND~----~Pvv-~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~g  302 (1189)
T KOG2041|consen  234 VCYANGRMQIMRSENDP----EPVV-VDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVG  302 (1189)
T ss_pred             EEEcCceehhhhhcCCC----CCeE-Eecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheE
Confidence            99999999887655531    2222 3333     56889999999999997 421         24666765 677777


Q ss_pred             eeee----eeEEEEEee
Q 005342          673 QVLL----ISHIMFVQI  685 (701)
Q Consensus       673 ~l~~----i~~~~fs~~  685 (701)
                      ++..    |++++|-..
T Consensus       303 tlkvpg~~It~lsWEg~  319 (1189)
T KOG2041|consen  303 TLKVPGSCITGLSWEGT  319 (1189)
T ss_pred             EEecCCceeeeeEEcCC
Confidence            7765    999998543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.12  E-value=9.3e-09  Score=98.39  Aligned_cols=251  Identities=10%  Similarity=-0.053  Sum_probs=161.3

Q ss_pred             CCceEEEEEc---CCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          392 NNQSRESTSL---PDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       392 h~~V~~l~~s---pdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      |..+..+.|.   .+|. .++-+..+|.|.++.............++. .........++.|++.|..++++..+|.+.+
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~-~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~  147 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS-KKISVVEALSLDISTSGTKIFVSDSRGSISG  147 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch-hhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence            3335555564   2444 566677789999998763222221111110 0001123567889999999999999999885


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCC-CCcEEEE-e
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLE-TFQTLAT-F  541 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~-~~~~~~~-~  541 (701)
                      -+....                ..++.+.    + +.|..+++...|+   .+.+.+|+ |+.+..||++ .++.+.. .
T Consensus       148 v~~t~~----------------~le~vq~----w-k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~  206 (339)
T KOG0280|consen  148 VYETEM----------------VLEKVQT----W-KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS  206 (339)
T ss_pred             Eeccee----------------eeeeccc----c-cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence            432110                1122221    2 4788889999998   77889999 8999999998 3444433 4


Q ss_pred             cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECC
Q 005342          542 ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~spd--g~~l~s~s~D~~I~vwd~~  616 (701)
                      +.|...|.+|.-+|..  +|++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|.  +..|+++- -+-.+|-+..
T Consensus       207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CM-h~G~ki~~~~  284 (339)
T KOG0280|consen  207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACM-HNGAKILDSS  284 (339)
T ss_pred             eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHH-hcCceEEEec
Confidence            5688899999988765  999999999999999984 66665433 4478999999994  33444443 3446777776


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEE-EEECCCCce
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQID-VYEAPTLNH  670 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~-iwd~~~g~~  670 (701)
                      .+.......+. ....|.   +-+..-.|.....++|++  .|+.++ +|-..++..
T Consensus       285 ~~~~e~~~~~~-s~~~hd---Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~  337 (339)
T KOG0280|consen  285 DKVLEFQIVLP-SDKIHD---SLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP  337 (339)
T ss_pred             ccccchheeee-cccccc---ceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence            64322111222 223333   667777775555678883  788855 887766653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.11  E-value=1.1e-09  Score=120.98  Aligned_cols=188  Identities=15%  Similarity=0.138  Sum_probs=145.9

Q ss_pred             EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCC-----EEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342          397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGR-----VVRLIYSHSGDFLVALTQTATHKLWKWQ  471 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~-----v~~l~~spdg~~l~s~s~dg~i~vwd~~  471 (701)
                      ...+.-+...++.+..+..+.+||...    +.... ..   .+...     ..-+.++++.-++++|+.-+.+.+|++.
T Consensus        92 g~~l~~e~k~i~l~~~~ns~~i~d~~~----~~~~~-~i---~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~  163 (967)
T KOG0974|consen   92 GAKLFEENKKIALVTSRNSLLIRDSKN----SSVLS-KI---QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH  163 (967)
T ss_pred             ccchhhhcceEEEEEcCceEEEEeccc----Cceeh-hc---CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc
Confidence            334555667888888889999999872    22111 11   12222     2223456677789999999999999763


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE-EecCCCCC
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA-TFANPPPI  547 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~-~~~~~~~~  547 (701)
                      .                    ++....  + .+|.+.|.++.++  |.++++.+ |.++++|++++.+... +.-+|...
T Consensus       164 ~--------------------dn~p~~--l-~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR  220 (967)
T KOG0974|consen  164 E--------------------DNKPIR--L-KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR  220 (967)
T ss_pred             c--------------------cCCcce--e-cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce
Confidence            1                    111111  2 5899999999998  99999999 8999999999988766 55679999


Q ss_pred             eEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          548 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       548 i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +..++++|+ .++++++|.+.++|+. .++.+.++.+|.+ .+..++..++...++|++.|+.+++||+..
T Consensus       221 vw~~~~~~n-~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  221 VWACCFLPN-RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eEEEEeccc-eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            999999999 8999999999999975 4566668888875 799999999999999999999999999875

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.11  E-value=8.3e-09  Score=98.71  Aligned_cols=225  Identities=16%  Similarity=0.094  Sum_probs=142.2

Q ss_pred             CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec---CCC-EEEEEECCCcEEEEecCCCCccccccccceeeEE
Q 005342          413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---SGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQL  488 (701)
Q Consensus       413 d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp---dg~-~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~  488 (701)
                      .|.+.++++.+.+... ...+.   ......+..+.|..   +|. .++-+..+|.|.++.......          ...
T Consensus        45 ~Gkl~Lys~~d~~~~~-l~~~q---~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s----------s~~  110 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSP-LDTLQ---CTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES----------SVH  110 (339)
T ss_pred             ccceEEEeecccccCc-cceee---eecccccceeeeeeccCCccceeeeccccceEEEEeecccee----------eee
Confidence            4678888887544333 11111   11245567777763   444 455666688898885422110          000


Q ss_pred             eeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE--EEEecCCCCCeEEEEEcCCC--eEEE
Q 005342          489 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD--LFAF  561 (701)
Q Consensus       489 ~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~spdg--~l~~  561 (701)
                      ..+-+..-+       ......++.|+  +.-++++. +|.+.+-+......  ++..++|.-++....|+...  .+.+
T Consensus       111 L~~ls~~ki-------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt  183 (339)
T KOG0280|consen  111 LRGLSSKKI-------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT  183 (339)
T ss_pred             ecccchhhh-------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe
Confidence            011110000       01123355666  66677766 79888766655443  34788899999999998877  9999


Q ss_pred             EeCCCcEEEEeCCC-CceEEe-ecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCC-CeeeeeeeeeeccCCCCCCC
Q 005342          562 GFDDSSILVHCPCT-KKTKAK-LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPET  637 (701)
Q Consensus       562 gs~dg~I~iwd~~~-~~~~~~-l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~~  637 (701)
                      |++|+.+..||++. ++.+.. -+-|...|.++.-+| .+.++++|+.|-.|++||.++ ++++....+.          
T Consensus       184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~----------  253 (339)
T KOG0280|consen  184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG----------  253 (339)
T ss_pred             cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc----------
Confidence            99999999999993 333332 345888999998887 678999999999999999995 4333222222          


Q ss_pred             CCeEEEEEcCCC--CEEEEEecCeEEEEECCCC
Q 005342          638 TIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTL  668 (701)
Q Consensus       638 ~~v~~v~~spdg--~~l~sg~Dg~I~iwd~~~g  668 (701)
                      ++|+.+.++|.-  +.++++--+..+|-+.+.+
T Consensus       254 GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  254 GGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK  286 (339)
T ss_pred             cceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence            889999999963  4455553334566666543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.11  E-value=2.3e-09  Score=111.88  Aligned_cols=197  Identities=14%  Similarity=0.075  Sum_probs=145.6

Q ss_pred             cCCCEEEEEECCCcEEEEecCCCCc-----cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----C-CEE
Q 005342          451 HSGDFLVALTQTATHKLWKWQSNKQ-----SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----G-SHL  519 (701)
Q Consensus       451 pdg~~l~s~s~dg~i~vwd~~~~~~-----~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~-~~l  519 (701)
                      |.+.+++....||.+++|+...+..     +..+.........|...-+.         ......+..+-     + ..+
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~---------s~~k~~~~~~~~~~s~~t~~l   73 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADY---------SPMKWLSLEKAKKASLDTSML   73 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEecc---------chHHHHhHHHHhhccCCceEE
Confidence            4567889999999999998866654     22222222223333311110         00111111111     2 245


Q ss_pred             EEEe-CCeEEEEeCCCCcEEEEec--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe
Q 005342          520 FSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS  595 (701)
Q Consensus       520 ~s~s-dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s  595 (701)
                      +-|. .|.|.+|+...|+....+.  .|.+.|.++.++.+. .|.+++.|+.+..|+..+...++.+.+....+.+++.+
T Consensus        74 vlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is  153 (541)
T KOG4547|consen   74 VLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCIS  153 (541)
T ss_pred             EeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEc
Confidence            5666 7999999999999888776  578899999998888 99999999999999999999999999988899999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-----CCEEEEE--ecCeEEEEECCC
Q 005342          596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QIHLLSI--HEGQIDVYEAPT  667 (701)
Q Consensus       596 pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-----g~~l~sg--~Dg~I~iwd~~~  667 (701)
                      |||..++++|.  +|++||+++++.+     . ...||.   ++|++++|..+     |.+++++  .+..+.+|-+..
T Consensus       154 ~D~~~l~~as~--~ik~~~~~~kevv-----~-~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  154 PDGKILLTASR--QIKVLDIETKEVV-----I-TFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCCEEEeccc--eEEEEEccCceEE-----E-EecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99999998884  8999999997533     3 223776   99999999887     8888885  566788887754

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.10  E-value=4.5e-10  Score=129.32  Aligned_cols=187  Identities=13%  Similarity=0.184  Sum_probs=146.0

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCc-eeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~-~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      ++.|-. |.++.=||...+-+||+.||.|++|...    .++ +..   ........|+.+.|+.+|+.+..+..||.+.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~----~~~~v~~---~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWG----HGQQVVC---FRTAGNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEecc----CCCeEEE---eeccCcchhhhhhhcccCCceeeeccCCcee
Confidence            334444 8999999999999999999999999986    332 222   1122348899999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe----CCeEEEEeCCC--Cc-EEE
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS----GGKISIFSLET--FQ-TLA  539 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s----dg~I~iwd~~~--~~-~~~  539 (701)
                      +|...                     ..-.+.  . +.|.....++.|-+..+++++    ++.+.+||..-  +. .++
T Consensus      2277 l~q~~---------------------pk~~~s--~-qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2277 LWQAS---------------------PKPYTS--W-QCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred             ecccC---------------------Ccceec--c-ccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee
Confidence            99542                     111221  1 357777778888777777764    48999999643  22 344


Q ss_pred             EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                        ..|.+.++++++-|.. .+++|+.+|.|++||++..+++++++.         +. ...++++|+..|.|+||++..-
T Consensus      2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence              6799999999999999 999999999999999999988887764         44 5678999999999999999874

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.09  E-value=9.3e-09  Score=100.38  Aligned_cols=222  Identities=9%  Similarity=0.066  Sum_probs=144.5

Q ss_pred             eeEEEeecCcceeeeEEEEccC-------CCCCeEEEEecc-CCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          319 LLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFP-TVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       319 ~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      +++.++||.+.++  ...--|.       +.|.+++||--. .++-...                           -+..
T Consensus        16 ll~~~eG~~d~vn--~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps---------------------------I~~~   66 (404)
T KOG1409|consen   16 LLSKIEGSQDDVN--AAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS---------------------------IYHY   66 (404)
T ss_pred             hhhhhcCchhhhh--hheeccCCCCeEEccccceeeeEEeccccccCch---------------------------hhhh
Confidence            4455677777776  4444443       889999999422 1211111                           0111


Q ss_pred             CCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342          391 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW  470 (701)
Q Consensus       391 ~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  470 (701)
                      ....++++.++++.+.|+.|-.+|++.-+.+.+.-..-...+   ....|..++..+.|+-....+++.+.|..+.---.
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r---~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~  143 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK---DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCT  143 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh---hhhhhhcceeeEEecCCceeEEEeccccceEEEee
Confidence            222288999999999999999999999888753111111111   12358899999999999999999998877653222


Q ss_pred             CCCCc--------------------cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeE
Q 005342          471 QSNKQ--------------------SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI  527 (701)
Q Consensus       471 ~~~~~--------------------~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I  527 (701)
                      +.+..                    ..|.....+...-..+..-.++.+ + .+|.+.+.+++|.  ...+.+|. |..+
T Consensus       144 e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~-~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~v  221 (404)
T KOG1409|consen  144 ESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT-F-NGHTGEVTCLKWDPGQRLLFSGASDHSV  221 (404)
T ss_pred             ccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE-E-cCcccceEEEEEcCCCcEEEeccccCce
Confidence            22222                    111111111111112222223322 2 4899999999999  66788888 9999


Q ss_pred             EEEeCCCCc-EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC
Q 005342          528 SIFSLETFQ-TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC  574 (701)
Q Consensus       528 ~iwd~~~~~-~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~  574 (701)
                      .+||+..++ ......+|...|..+..-+.- .+.+++.||.|.+||++
T Consensus       222 i~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  222 IMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             EEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            999996554 345667888888888877777 89999999999999975

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.09  E-value=5.1e-08  Score=98.90  Aligned_cols=224  Identities=13%  Similarity=0.088  Sum_probs=153.1

Q ss_pred             ccCCCc---eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee--cCCCCCCC-C--EE---EEE-Eec-CCCE
Q 005342          389 FNDNNQ---SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL--LPDNSFGG-R--VV---RLI-YSH-SGDF  455 (701)
Q Consensus       389 l~~h~~---V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~--~~~~~~~~-~--v~---~l~-~sp-dg~~  455 (701)
                      |+.|++   -.+=..+.||+.++.... |.|.++|..    +..+.++.  +|...... +  +.   -+. |++ +|.+
T Consensus       260 lrrHTnFtdYY~R~~nsDGkrIvFq~~-GdIylydP~----td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~  334 (668)
T COG4946         260 LRRHTNFTDYYPRNANSDGKRIVFQNA-GDIYLYDPE----TDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDY  334 (668)
T ss_pred             hhhcCCchhccccccCCCCcEEEEecC-CcEEEeCCC----cCcceeeecCCccccccccccccCHHHhhhhhccCCCcE
Confidence            455555   223335678888877555 889999987    44444443  22221111 1  11   111 332 5777


Q ss_pred             EEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CC-eEEEEe
Q 005342          456 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG-KISIFS  531 (701)
Q Consensus       456 l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg-~I~iwd  531 (701)
                      ++..|. |...+.                     ++..+..++    -++...|.-..+.  ++-++.|. || .+-++|
T Consensus       335 ia~VSR-GkaFi~---------------------~~~~~~~iq----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd  388 (668)
T COG4946         335 IALVSR-GKAFIM---------------------RPWDGYSIQ----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD  388 (668)
T ss_pred             EEEEec-CcEEEE---------------------CCCCCeeEE----cCCCCceEEEEEccCCcceEEeccCCceEEEEe
Confidence            776665 556665                     333344433    3577778877777  66778887 76 999999


Q ss_pred             CCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC--
Q 005342          532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--  608 (701)
Q Consensus       532 ~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~--  608 (701)
                      ..+++. ..+.+.-+.|.++..+|+| +++++.....|.+.|+.++.....-+...+-|+..+|||+++++|.+--+|  
T Consensus       389 ~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~  467 (668)
T COG4946         389 KDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYY  467 (668)
T ss_pred             cCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCccee
Confidence            987754 4555577889999999999 999999999999999999987654455567899999999999999886665  


Q ss_pred             --eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          609 --QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       609 --~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                        .|+++|+.+++....   . .+.      +.-.+.+|.|||++|.-
T Consensus       468 tq~Iklydm~~~Kiy~v---T-T~t------a~DfsPaFD~d~ryLYf  505 (668)
T COG4946         468 TQSIKLYDMDGGKIYDV---T-TPT------AYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             eeeEEEEecCCCeEEEe---c-CCc------ccccCcccCCCCcEEEE
Confidence              699999999863321   1 112      33367789999998874

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.07  E-value=4.2e-10  Score=115.29  Aligned_cols=207  Identities=12%  Similarity=0.140  Sum_probs=148.1

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +.||+. |+.++--.+.+.+++++.|++|++|.+....+.-......++...|..+|.++.|-.|-+++++  .||.+.+
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHl  808 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHL  808 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCccee
Confidence            789999 9999888888999999999999999996322211111112355679999999999999887654  5788999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecc---cCCCCCCeEEEEec-CCEEEEE-e-CCeEEEEeCCCCcEEEEe
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDI---AADPKDSISCFALR-GSHLFSA-S-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~v~~l~~s-~~~l~s~-s-dg~I~iwd~~~~~~~~~~  541 (701)
                      ||.                     --|+.+....   +.+..+.|.|+.-- ...++.+ + ..+|+++|.+.+.-...+
T Consensus       809 WDP---------------------Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~  867 (1034)
T KOG4190|consen  809 WDP---------------------FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL  867 (1034)
T ss_pred             ecc---------------------cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE
Confidence            964                     3333221101   01222334444332 3344444 4 789999999887654433


Q ss_pred             -----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE-EE
Q 005342          542 -----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV-WD  614 (701)
Q Consensus       542 -----~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v-wd  614 (701)
                           .++...+.++++.|.| .+++|-.+|.|.+.|.++|+.+..++........++- |..+.++....|.++.| |.
T Consensus       868 kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  868 KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeeh
Confidence                 2445668999999999 9999999999999999999999988865555555543 66778888888999999 99


Q ss_pred             CCCCe
Q 005342          615 AVGWK  619 (701)
Q Consensus       615 ~~~g~  619 (701)
                      .-+|.
T Consensus       947 aldgi  951 (1034)
T KOG4190|consen  947 ALDGI  951 (1034)
T ss_pred             hcCCe
Confidence            88864

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=1.6e-07  Score=97.55  Aligned_cols=268  Identities=12%  Similarity=0.123  Sum_probs=176.5

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE-----ECC-----Cc
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-----TQT-----AT  464 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~-----s~d-----g~  464 (701)
                      .+..++|++|+++|.+.. +.++|++..    .+. ..+..    ....+.++.|||.|.+|.+-     ..+     -.
T Consensus        37 ~~v~~~S~~G~lfA~~~~-~~v~i~~~~----~~~-~~lt~----~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn  106 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSDN-QVVKVFEIA----TLK-VVLCV----ELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN  106 (566)
T ss_pred             ceeEEEcCCCcEEEEEcC-CeEEEEEcc----CCc-EEEEe----ccceeeeeeecccccccccccccccccCCCCCCCc
Confidence            567889999999998876 778899886    332 12221    12389999999999987642     122     35


Q ss_pred             EEEEecCCCCcc--------------------ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-C---CEEE
Q 005342          465 HKLWKWQSNKQS--------------------LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLF  520 (701)
Q Consensus       465 i~vwd~~~~~~~--------------------~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~---~~l~  520 (701)
                      +.+|++++....                    .+.....-.+.+|+..+-.....   .-|...|+.+.+| |   ..++
T Consensus       107 ~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~---kl~~~~i~~f~lSpgp~~~~vA  183 (566)
T KOG2315|consen  107 VLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH---KLSVSGITMLSLSPGPEPPFVA  183 (566)
T ss_pred             eeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceee---eeeccceeeEEecCCCCCceEE
Confidence            679998874330                    00111122367777766443322   2356788999999 4   3444


Q ss_pred             EE-----e-CCeEEEEeCCCCcE-----EEEecCCCCCeEEEEEcCCC--eEEEEe--CC---------CcEEEEeCCCC
Q 005342          521 SA-----S-GGKISIFSLETFQT-----LATFANPPPIATYFILLPQD--LFAFGF--DD---------SSILVHCPCTK  576 (701)
Q Consensus       521 s~-----s-dg~I~iwd~~~~~~-----~~~~~~~~~~i~~l~~spdg--~l~~gs--~d---------g~I~iwd~~~~  576 (701)
                      +-     + -+.+++|-......     .++|-  ...-..+.|.+-|  +|+..+  -|         .+++++++...
T Consensus       184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~  261 (566)
T KOG2315|consen  184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE  261 (566)
T ss_pred             EEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence            42     1 26899998752221     12221  1222467888877  333332  23         26888888744


Q ss_pred             ceEEeecCCCCCeEEEEEecCCCEEE--EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          577 KTKAKLKGHQNRITCLAYSLSLNVLV--SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       577 ~~~~~l~~h~~~V~~v~~spdg~~l~--s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      ...-.+. ..++|.++.|+|+|+-++  .|-.-.++.|+|++..      ++..+..      ++-+++-|+|.|++++.
T Consensus       262 s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~df~e------gpRN~~~fnp~g~ii~l  328 (566)
T KOG2315|consen  262 SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFDFPE------GPRNTAFFNPHGNIILL  328 (566)
T ss_pred             eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeEeCCC------CCccceEECCCCCEEEE
Confidence            4444443 578999999999997544  4667889999999873      3332332      56689999999999886


Q ss_pred             -E---ecCeEEEEECCCCceeeeeee--eeEEEEEeeEEeee
Q 005342          655 -I---HEGQIDVYEAPTLNHTSQVLL--ISHIMFVQIVVKFH  690 (701)
Q Consensus       655 -g---~Dg~I~iwd~~~g~~~~~l~~--i~~~~fs~~~~~f~  690 (701)
                       |   --|.+.|||+.+.+++..+..  -+-+.|+|+.--|.
T Consensus       329 AGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~fl  370 (566)
T KOG2315|consen  329 AGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFL  370 (566)
T ss_pred             eecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEE
Confidence             5   368999999999999988887  77788888766554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.06  E-value=9.4e-08  Score=98.09  Aligned_cols=285  Identities=12%  Similarity=0.078  Sum_probs=173.7

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC----------------------CCCCeEEEEeccCCcccccccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN----------------------ANNETISLKDFPTVSNLRYASSIL  364 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd----------------------s~d~~i~lWd~~~~~~~~~~~~~~  364 (701)
                      ..|.+|+.+....+..+. | ..|.  .+.|||+                      ..++.+.+||..+|..+..     
T Consensus        53 ~~V~~~~g~~~~~l~~~~-~-~~V~--~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s-----  123 (561)
T COG5354          53 AGVECWGGPSKAKLVRFR-H-PDVK--YLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS-----  123 (561)
T ss_pred             cceEEccccchhheeeee-c-CCce--ecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEee-----
Confidence            456677766654333332 2 2355  6666666                      5566899999999988776     


Q ss_pred             CCCCCCCCCCcccccCCCCCCCccccCCCc-eE-EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCC
Q 005342          365 TDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SR-ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG  442 (701)
Q Consensus       365 ~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~-~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~  442 (701)
                           +.+.+.                 .. .| -+.|+-+..++|--.. ..++|+++...-.......      -...
T Consensus       124 -----f~~~~q-----------------~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~------lr~~  174 (561)
T COG5354         124 -----FNGISQ-----------------PYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKN------LRPV  174 (561)
T ss_pred             -----ccccCC-----------------cccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhh------cccc
Confidence                 444322                 11 34 5789988888775533 5688888631111111111      1236


Q ss_pred             CEEEEEEecCCC--EEEE-----EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeE-EeecccCCCCCCeEEEEe
Q 005342          443 RVVRLIYSHSGD--FLVA-----LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV-MTNDIAADPKDSISCFAL  514 (701)
Q Consensus       443 ~v~~l~~spdg~--~l~s-----~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~l~~  514 (701)
                      .+....|+|.|+  .|+.     .+..+.+++|.+                     ..+.. .++.+.   ...-..+.|
T Consensus       175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI---------------------p~~s~l~tk~lf---k~~~~qLkW  230 (561)
T COG5354         175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI---------------------PKNSVLVTKNLF---KVSGVQLKW  230 (561)
T ss_pred             ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc---------------------cCCCeeeeeeeE---eecccEEEE
Confidence            788888998753  2222     122344555533                     33332 211111   111123445


Q ss_pred             c--CCEEEEEe------------CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCc
Q 005342          515 R--GSHLFSAS------------GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKK  577 (701)
Q Consensus       515 s--~~~l~s~s------------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~~  577 (701)
                      .  |+++++-.            ...++++++.... +.......++|..++|.|++   -+++|..+..+.++|++.. 
T Consensus       231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-  308 (561)
T COG5354         231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-  308 (561)
T ss_pred             ecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-
Confidence            5  65544311            2468888886433 33332467899999999998   4455678889999999866 


Q ss_pred             eEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          578 TKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       578 ~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      +...+  ..+.=+.+.|||.+++++.++.|   |.|-+||..+.-    .....+. +     ....-+.|+|||+++.+
T Consensus       309 l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~-~-----~n~s~~~wspd~qF~~~  376 (561)
T COG5354         309 LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFN-G-----LNTSYCDWSPDGQFYDT  376 (561)
T ss_pred             eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEee-c-----CCceEeeccCCceEEEe
Confidence            44433  35556788999999999998876   579999998742    2221122 1     34466789999999886


Q ss_pred             ---E----ecCeEEEEECCC
Q 005342          655 ---I----HEGQIDVYEAPT  667 (701)
Q Consensus       655 ---g----~Dg~I~iwd~~~  667 (701)
                         |    .|..|.|||+..
T Consensus       377 ~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         377 DTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             cCCCcccccCcceEEEEecC
Confidence               3    288999999943

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.00  E-value=5.4e-09  Score=101.87  Aligned_cols=241  Identities=14%  Similarity=0.167  Sum_probs=150.9

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-c-CCC--CCCCCEEEEEEecCC-CEEEEEECC
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-L-PDN--SFGGRVVRLIYSHSG-DFLVALTQT  462 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~-~~~--~~~~~v~~l~~spdg-~~l~s~s~d  462 (701)
                      -++|+- |++++++.|+..++++.. =.|.+|+++-   +.++..+. + |.+  .-..-|++..|+|.. +.++..++.
T Consensus       160 aNaHtyhiNSIS~NsD~Et~lSADd-LRINLWnlei---~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSK  235 (433)
T KOG1354|consen  160 ANAHTYHINSISVNSDKETFLSADD-LRINLWNLEI---IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSK  235 (433)
T ss_pred             cccceeEeeeeeecCccceEeeccc-eeeeeccccc---cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCC
Confidence            568888 999999999999988765 7899999974   33333322 1 111  123468888999964 466777788


Q ss_pred             CcEEEEecCCCCccccccccceeeEEe----eCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCC-CC
Q 005342          463 ATHKLWKWQSNKQSLEEENVNMESQLY----QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLE-TF  535 (701)
Q Consensus       463 g~i~vwd~~~~~~~~g~~~~~~~i~~~----d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~-~~  535 (701)
                      |+|++.|++....-+.+.      .++    |+.+....     .+--..|.++.|+  |+++++-+--+|++||+. ..
T Consensus       236 GtIrLcDmR~~aLCd~hs------KlfEepedp~~rsff-----seiIsSISDvKFs~sGryilsRDyltvk~wD~nme~  304 (433)
T KOG1354|consen  236 GTIRLCDMRQSALCDAHS------KLFEEPEDPSSRSFF-----SEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA  304 (433)
T ss_pred             CcEEEeechhhhhhcchh------hhhccccCCcchhhH-----HHHhhhhhceEEccCCcEEEEeccceeEEEeccccC
Confidence            999999986443200000      000    11111111     1234578899999  888888777899999994 45


Q ss_pred             cEEEEecCCC------------CCe---EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE-EeecCCCC--CeEEEEEec
Q 005342          536 QTLATFANPP------------PIA---TYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQN--RITCLAYSL  596 (701)
Q Consensus       536 ~~~~~~~~~~------------~~i---~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~-~~l~~h~~--~V~~v~~sp  596 (701)
                      +++.+++.|.            ..|   ..++|+.++ .+++|+.....++++...|... .++.....  ....+   .
T Consensus       305 ~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~  381 (433)
T KOG1354|consen  305 KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---L  381 (433)
T ss_pred             CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---c
Confidence            6777776552            122   568899999 9999999999999997665432 22222111  12211   1


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEE
Q 005342          597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE  664 (701)
Q Consensus       597 dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd  664 (701)
                      .-+.+.+++......+|-         ..+.    ..    ..+...+|+|..+.+|+...+.++|+.
T Consensus       382 k~~~V~~~g~r~~~~~~v---------d~ld----f~----kkilh~aWhp~en~ia~aatnnlyif~  432 (433)
T KOG1354|consen  382 KLRLVSSSGKRKRDEISV---------DALD----FR----KKILHTAWHPKENSIAVAATNNLYIFQ  432 (433)
T ss_pred             cceeeecCCCcccccccc---------chhh----hh----hHHHhhccCCccceeeeeecCceEEec
Confidence            223444455443321110         1111    00    456778899999999998777777763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=8.1e-08  Score=101.80  Aligned_cols=278  Identities=9%  Similarity=0.096  Sum_probs=174.2

Q ss_pred             EEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCC
Q 005342          334 CINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDAD  405 (701)
Q Consensus       334 ~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~  405 (701)
                      |++|+.+       +.||.+++--+.+...-..          ..|   +|..+.- ...+.|.||.. |.-+.|+.+.+
T Consensus        19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~----------~~g---laa~snL-smNQtLeGH~~sV~vvTWNe~~Q   84 (1189)
T KOG2041|consen   19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLN----------KSG---LAAASNL-SMNQTLEGHNASVMVVTWNENNQ   84 (1189)
T ss_pred             EEEEcccCCeEEeccccceeEEEEccccCCccc----------ccc---ccccccc-chhhhhccCcceEEEEEeccccc
Confidence            8999887       8899999887765432211          111   1110000 02344889999 99999999999


Q ss_pred             eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccccccccee
Q 005342          406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME  485 (701)
Q Consensus       406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~  485 (701)
                      .|-+...+|-|.+|-+.    .+.... .+..+...+.|.+++|+.||..+.....||.|.|=.++++            
T Consensus        85 KLTtSDt~GlIiVWmly----kgsW~E-EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN------------  147 (1189)
T KOG2041|consen   85 KLTTSDTSGLIIVWMLY----KGSWCE-EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN------------  147 (1189)
T ss_pred             cccccCCCceEEEEeee----cccHHH-HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc------------
Confidence            99999999999999998    343221 1122335678999999999999999999999998755332            


Q ss_pred             eEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc-------EEEE----ecCCCCCeEEE
Q 005342          486 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-------TLAT----FANPPPIATYF  551 (701)
Q Consensus       486 i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~-------~~~~----~~~~~~~i~~l  551 (701)
                               ++.-+.+...   ....+.|+  .+.++.+- +|.+++||.+..-       +...    +......|-.+
T Consensus       148 ---------RIwgKeLkg~---~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i  215 (1189)
T KOG2041|consen  148 ---------RIWGKELKGQ---LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEI  215 (1189)
T ss_pred             ---------eecchhcchh---eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccce
Confidence                     2222222211   23356677  33344444 7999999975321       1111    11112234444


Q ss_pred             EEc--------CCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---------eEEEE
Q 005342          552 ILL--------PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---------QLCVW  613 (701)
Q Consensus       552 ~~s--------pdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---------~I~vw  613 (701)
                      .|.        ||- .++++..+|.+.|..-.+....-.+. ..-.+....|+++|.+||.++.|.         .|.+|
T Consensus       216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy  294 (1189)
T KOG2041|consen  216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY  294 (1189)
T ss_pred             eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence            443        566 89999999999887544332222222 225688899999999999988642         45555


Q ss_pred             ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342          614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  665 (701)
Q Consensus       614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~  665 (701)
                      ..-. +..  ..++ ++      +..|++++|-..|-.+|..-|+.|++=++
T Consensus       295 sp~G-~i~--gtlk-vp------g~~It~lsWEg~gLriA~AvdsfiyfanI  336 (1189)
T KOG2041|consen  295 SPYG-HIV--GTLK-VP------GSCITGLSWEGTGLRIAIAVDSFIYFANI  336 (1189)
T ss_pred             ccch-hhe--EEEe-cC------CceeeeeEEcCCceEEEEEecceEEEEee
Confidence            4332 211  1222 11      16788888887777777666666665544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.99  E-value=7.2e-07  Score=106.40  Aligned_cols=262  Identities=10%  Similarity=-0.010  Sum_probs=154.7

Q ss_pred             eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeec-CCC---------CCCCCEEEEEEecCCCEEEEEEC-C
Q 005342          395 SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLL-PDN---------SFGGRVVRLIYSHSGDFLVALTQ-T  462 (701)
Q Consensus       395 V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~-~~~---------~~~~~v~~l~~spdg~~l~s~s~-d  462 (701)
                      ...++++++ |..+++-+.++.|.+||..    ......+.. ...         ..-.....++++++++.|+++.. +
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~----G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n  645 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD----GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN  645 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCC----CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence            456888874 6677888888999999985    332222111 000         01234678999999887666655 5


Q ss_pred             CcEEEEecCCCCcc--ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE-EEEe-CCeEEEEeCCCCc
Q 005342          463 ATHKLWKWQSNKQS--LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLETFQ  536 (701)
Q Consensus       463 g~i~vwd~~~~~~~--~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l-~s~s-dg~I~iwd~~~~~  536 (701)
                      +.|+++|..++...  .|....     ..+...+..-.    ...-.....++++  +..+ ++.+ ++.|++||..++.
T Consensus       646 ~~Ir~id~~~~~V~tlag~G~~-----g~~~~gg~~~~----~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        646 HALREIDFVNETVRTLAGNGTK-----GSDYQGGKKGT----SQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             ceEEEEecCCCEEEEEeccCcc-----cCCCCCChhhh----HhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            77888876443210  000000     00000000000    0001233577887  4444 4444 7899999997765


Q ss_pred             EEEEecCC---------------CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecC-------------C-
Q 005342          537 TLATFANP---------------PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-------------H-  585 (701)
Q Consensus       537 ~~~~~~~~---------------~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~-------------h-  585 (701)
                      .. .+.+.               -.....++++|+|  ++++.+.++.|++||+.++.......+             + 
T Consensus       717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            32 22211               1234679999998  555667778999999987653211100             0 


Q ss_pred             -------CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee--ccCCC--CCCCCCeEEEEEcCCCCEEEE
Q 005342          586 -------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS--FQTGL--VPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       586 -------~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~--~~~~~--~~~~~~v~~v~~spdg~~l~s  654 (701)
                             -.....++++++|+++++.+.+++|++||..++..........  ...+.  ...-.....++++++|+.+++
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa  875 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA  875 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence                   1124688999999998999999999999998875321110000  00000  000135678999999997777


Q ss_pred             E-ecCeEEEEECCCCce
Q 005342          655 I-HEGQIDVYEAPTLNH  670 (701)
Q Consensus       655 g-~Dg~I~iwd~~~g~~  670 (701)
                      . .++.|++||+.+++.
T Consensus       876 Dt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCcc
Confidence            4 789999999998875

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=1.4e-07  Score=97.71  Aligned_cols=240  Identities=9%  Similarity=0.095  Sum_probs=154.2

Q ss_pred             CCCceEEEEEcCCCCeEEEEcC-----------CCcEEEEeccccCCCCceeEeecCC-CCCCCCEEEEEEecCCCEEEE
Q 005342          391 DNNQSRESTSLPDADSAVCAKS-----------LEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       391 ~h~~V~~l~~spdg~~l~s~s~-----------d~~v~iw~~~~~~~~~~~~~l~~~~-~~~~~~v~~l~~spdg~~l~s  458 (701)
                      .|++|..+.|||+.+||+|-+.           ...++|||+.    +|...+ +++. .+....-.-..||.|++++|.
T Consensus       248 ~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~----tG~lkr-sF~~~~~~~~~WP~frWS~DdKy~Ar  322 (698)
T KOG2314|consen  248 YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA----TGLLKR-SFPVIKSPYLKWPIFRWSHDDKYFAR  322 (698)
T ss_pred             cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc----ccchhc-ceeccCCCccccceEEeccCCceeEE
Confidence            6778999999999999998652           2578999998    665443 1111 111122234689999999887


Q ss_pred             EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe---C---CeEEEE
Q 005342          459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---G---GKISIF  530 (701)
Q Consensus       459 ~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s---d---g~I~iw  530 (701)
                      -.. .+|.||+.                     .+-.++.  ...-....|..+.|+  ++.||.-.   +   ..+.+.
T Consensus       323 m~~-~sisIyEt---------------------psf~lld--~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~  378 (698)
T KOG2314|consen  323 MTG-NSISIYET---------------------PSFMLLD--KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLM  378 (698)
T ss_pred             ecc-ceEEEEec---------------------Cceeeec--ccccCCccccCcccCCCcceEEEEcccccCCcceEEEE
Confidence            665 56788853                     2211111  111123567888888  66676544   1   467888


Q ss_pred             eCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC----------CCcEEEEeCCCCce-EEeecCCCCCeEEEEEecCC
Q 005342          531 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFD----------DSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSL  598 (701)
Q Consensus       531 d~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~----------dg~I~iwd~~~~~~-~~~l~~h~~~V~~v~~spdg  598 (701)
                      .+.+++.+++-.-+.-.-+.+-|-.+| +|+.-..          =..+.|+.++.... +.... -...|...+|-|.|
T Consensus       379 evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~g  457 (698)
T KOG2314|consen  379 EVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHG  457 (698)
T ss_pred             ecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCC
Confidence            888888887766555455677788888 7765321          11455666655433 22222 45678999999999


Q ss_pred             CEEEEEeC---CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE----ecCeEEEEECCC
Q 005342          599 NVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPT  667 (701)
Q Consensus       599 ~~l~s~s~---D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg----~Dg~I~iwd~~~  667 (701)
                      +.+++-+.   ..++.+|.+++... ....+..++.      ...+.+.|+|.|++++.+    ..|.+..+|..-
T Consensus       458 dkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~dk------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  458 DKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELDK------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             CeEEEEEccccccceeEEEeecCCC-chhhhhhhcc------cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            87766543   45788998884211 1122222322      446899999999999873    478899999863

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.91  E-value=3.5e-08  Score=94.97  Aligned_cols=262  Identities=15%  Similarity=0.132  Sum_probs=162.0

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCC------------CCCEEEEEEecCCC--EEEEE
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSF------------GGRVVRLIYSHSGD--FLVAL  459 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~------------~~~v~~l~~spdg~--~l~s~  459 (701)
                      |+++.|...|.|+++|...|.|.++.-+...   .| .++--.+.+|            ...|..+.|..++.  .++..
T Consensus        29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~---~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          29 ITAVEFDETGLYLATGDKGGRVVLFEREKSY---GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             eeEEEeccccceEeecCCCceEEEeeccccc---ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            8999999999999999999999999876322   11 1100011222            34678888876653  56777


Q ss_pred             ECCCcEEEEecCCCCc--------------c-ccccccceeeEEeeCCC-CeEEee----cccCCCCCCeEEEEec--CC
Q 005342          460 TQTATHKLWKWQSNKQ--------------S-LEEENVNMESQLYQPSS-KLVMTN----DIAADPKDSISCFALR--GS  517 (701)
Q Consensus       460 s~dg~i~vwd~~~~~~--------------~-~g~~~~~~~i~~~d~~~-~~~~~~----~~~~~~~~~v~~l~~s--~~  517 (701)
                      +.|.+|++|.+.....              + .|.......+++-.... ..++..    .....|...|.++++.  .+
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            8899999998755432              1 11111100011100000 011110    0113577889999998  66


Q ss_pred             EEEEEeCCeEEEEeCCCCc---EEEEecCC-----CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce------E--
Q 005342          518 HLFSASGGKISIFSLETFQ---TLATFANP-----PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT------K--  579 (701)
Q Consensus       518 ~l~s~sdg~I~iwd~~~~~---~~~~~~~~-----~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~------~--  579 (701)
                      .++++.|-.|.+|++.-..   .+..+.+|     ...|++..|+|..  .+...+..|.|++-|++...+      +  
T Consensus       186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe  265 (460)
T COG5170         186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE  265 (460)
T ss_pred             eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence            7788879999999986432   22333334     2357899999988  777788899999999984321      1  


Q ss_pred             --------EeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCC--------CCCCCe---
Q 005342          580 --------AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--------PETTIV---  640 (701)
Q Consensus       580 --------~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~--------~~~~~v---  640 (701)
                              .-+.+-.+.|..+.|+|+|+++++-+. -+|++||+...+    .++.+++-+..        -....|   
T Consensus       266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k----~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK----NPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc----CCceeechHHHHHHHHHhhhhccceeee
Confidence                    111223356888999999999987765 589999999853    33332221110        000122   


Q ss_pred             EEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          641 NHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       641 ~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                      ..+.||-|.+.+++| ..+...||-
T Consensus       341 FeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         341 FEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             EEEEecCCcccccccccccceeeec
Confidence            457888888888876 455555555

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=8.4e-07  Score=95.45  Aligned_cols=194  Identities=13%  Similarity=0.094  Sum_probs=119.9

Q ss_pred             CEEEEEEecCCCE-EEEEECC-CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE
Q 005342          443 RVVRLIYSHSGDF-LVALTQT-ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  518 (701)
Q Consensus       443 ~v~~l~~spdg~~-l~s~s~d-g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~  518 (701)
                      ......|+|||+. ++..+.+ +.-.+|                   ++|..+++...  +. ...+......|+  |+.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iy-------------------v~dl~tg~~~~--lt-~~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLY-------------------KYNLYTGKKEK--IA-SSQGMLVVSDVSKDGSK  246 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEE-------------------EEECCCCcEEE--Ee-cCCCcEEeeEECCCCCE
Confidence            6778999999985 5555554 233444                   23556665332  11 234455567788  766


Q ss_pred             EEEEe----CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCceEEeecCCCCCeE
Q 005342          519 LFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRIT  590 (701)
Q Consensus       519 l~s~s----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~  590 (701)
                      ++...    +..|+++|+.++... .+..+........|+||| .|+..+. .+  .|+++|+.+++..+....  +. .
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~  322 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-N  322 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-c
Confidence            65443    367999999877643 444343334567899999 6655553 33  789999988876443321  11 1


Q ss_pred             EEEEecCCCEEEEEeCC---------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--e--c
Q 005342          591 CLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H--E  657 (701)
Q Consensus       591 ~v~~spdg~~l~s~s~D---------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~--D  657 (701)
                      ...|||||++++..+..         ..|++.|+.+|+.   ..+.   .+     .......|+|||+.++..  .  .
T Consensus       323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~---~~LT---~~-----~~~~~p~~SPDG~~I~f~~~~~~~  391 (419)
T PRK04043        323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI---RRLT---AN-----GVNQFPRFSSDGGSIMFIKYLGNQ  391 (419)
T ss_pred             CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe---EECC---CC-----CCcCCeEECCCCCEEEEEEccCCc
Confidence            24899999988876543         3788999988752   2222   22     122358899999988763  2  2


Q ss_pred             CeEEEEECCCCceeeee
Q 005342          658 GQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       658 g~I~iwd~~~g~~~~~l  674 (701)
                      ..+.+.++. |.....+
T Consensus       392 ~~L~~~~l~-g~~~~~l  407 (419)
T PRK04043        392 SALGIIRLN-YNKSFLF  407 (419)
T ss_pred             EEEEEEecC-CCeeEEe
Confidence            247777874 4443434

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.87  E-value=2.9e-06  Score=87.64  Aligned_cols=263  Identities=13%  Similarity=0.102  Sum_probs=152.8

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC--------C---------CCCeEEEEeccCCccccccccccCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------A---------NNETISLKDFPTVSNLRYASSILTDKPN  369 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s---------~d~~i~lWd~~~~~~~~~~~~~~~~~~~  369 (701)
                      ++|.+.|.++++.+.++..-.. ..  .+ +|||        +         .+..|.+||..+.+....+        .
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~-P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i--------~   94 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFL-PN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI--------E   94 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCC-Cc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE--------c
Confidence            6788899999999988875432 33  33 8888        5         7899999999999988773        0


Q ss_pred             CCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc-C-CCcEEEEeccccCCCCceeE-eecCCCCCCCCEEE
Q 005342          370 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK-S-LEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVR  446 (701)
Q Consensus       370 ~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s-~-d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~  446 (701)
                      +...+.             +........++++|||++++... . +..|.+.|+.    .++... +..     .+...-
T Consensus        95 ~p~~p~-------------~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~----~~kvv~ei~v-----p~~~~v  152 (352)
T TIGR02658        95 LPEGPR-------------FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE----GKAFVRMMDV-----PDCYHI  152 (352)
T ss_pred             cCCCch-------------hhccCccceEEECCCCCEEEEecCCCCCEEEEEECC----CCcEEEEEeC-----CCCcEE
Confidence            111000             00011144688999999998776 3 6899999998    454333 222     111111


Q ss_pred             EEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCC
Q 005342          447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGG  525 (701)
Q Consensus       447 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg  525 (701)
                      ...+++ .+ .+.+.||......+...    |+. ...+..+++.+.. .+       ...+  ..... |.++.+...|
T Consensus       153 y~t~e~-~~-~~~~~Dg~~~~v~~d~~----g~~-~~~~~~vf~~~~~-~v-------~~rP--~~~~~dg~~~~vs~eG  215 (352)
T TIGR02658       153 FPTAND-TF-FMHCRDGSLAKVGYGTK----GNP-KIKPTEVFHPEDE-YL-------INHP--AYSNKSGRLVWPTYTG  215 (352)
T ss_pred             EEecCC-cc-EEEeecCceEEEEecCC----Cce-EEeeeeeecCCcc-cc-------ccCC--ceEcCCCcEEEEecCC
Confidence            111111 11 12233443333322111    110 0000111111100 00       0112  11221 6666666689


Q ss_pred             eEEEEeCCCC-----cEEEEecC-------CCCCeEEEEEcCCC-eEEEEe----------CCCcEEEEeCCCCceEEee
Q 005342          526 KISIFSLETF-----QTLATFAN-------PPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKL  582 (701)
Q Consensus       526 ~I~iwd~~~~-----~~~~~~~~-------~~~~i~~l~~spdg-~l~~gs----------~dg~I~iwd~~~~~~~~~l  582 (701)
                      .|.+.|+...     +....+..       ......-++++|++ .+++..          ..+.|.++|..+++.+..+
T Consensus       216 ~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i  295 (352)
T TIGR02658       216 KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI  295 (352)
T ss_pred             eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE
Confidence            9999996432     22332221       12334459999999 555532          1247999999999999988


Q ss_pred             cCCCCCeEEEEEecCCC-EEEEEe-CCCeEEEEECCCCeee
Q 005342          583 KGHQNRITCLAYSLSLN-VLVSSG-ADAQLCVWDAVGWKKL  621 (701)
Q Consensus       583 ~~h~~~V~~v~~spdg~-~l~s~s-~D~~I~vwd~~~g~~~  621 (701)
                      .. ...+..++++||++ +|++.. .++.|.+.|..+++.+
T Consensus       296 ~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i  335 (352)
T TIGR02658       296 EL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL  335 (352)
T ss_pred             eC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence            73 34689999999999 777655 5788999999997543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.85  E-value=1.2e-08  Score=117.92  Aligned_cols=192  Identities=14%  Similarity=0.232  Sum_probs=144.8

Q ss_pred             CCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC
Q 005342          440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  517 (701)
Q Consensus       440 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~  517 (701)
                      +-..|.++.-+|...+-++|+.||.+++|.+..+.                    +++.  ++......|+.+.|+  |+
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~--------------------~v~~--~rt~g~s~vtr~~f~~qGn 2264 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ--------------------QVVC--FRTAGNSRVTRSRFNHQGN 2264 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCC--------------------eEEE--eeccCcchhhhhhhcccCC
Confidence            45678888889999999999999999999763321                    1222  222333788888888  77


Q ss_pred             EEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEE---eCCCcEEEEeCCC---CceEEeecCCCCCeE
Q 005342          518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFG---FDDSSILVHCPCT---KKTKAKLKGHQNRIT  590 (701)
Q Consensus       518 ~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~g---s~dg~I~iwd~~~---~~~~~~l~~h~~~V~  590 (701)
                      .+..+. ||.+.+|.+. .+.....+.|......+.|-..+ ++++   +.++.+.+||.--   ...++  ..|.+.++
T Consensus      2265 k~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~-~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT 2340 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSL-LATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGAT 2340 (2439)
T ss_pred             ceeeeccCCceeecccC-CcceeccccCCccccceeeeehh-hhccccCCCCCcccchhcccCcccceee--eecCCCce
Confidence            777777 9999999986 56667777888888888876643 4433   4567999999542   23344  67999999


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342          591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN  669 (701)
Q Consensus       591 ~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~  669 (701)
                      ++++-|..+.|+|||.+|.|++||++..+      +.    ++-    ..    +. ...++++| ..|.|+||++..-.
T Consensus      2341 ~l~~~P~~qllisggr~G~v~l~D~rqrq------l~----h~~----~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQ------LR----HTF----QA----LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             EEEEcCcceEEEecCCcCcEEEeehHHHH------HH----HHh----hh----hh-hhheeeccCcccceEEEEccccc
Confidence            99999999999999999999999998742      22    221    11    33 45677776 89999999999888


Q ss_pred             eeeeeee
Q 005342          670 HTSQVLL  676 (701)
Q Consensus       670 ~~~~l~~  676 (701)
                      .++++++
T Consensus      2402 ll~~~p~ 2408 (2439)
T KOG1064|consen 2402 LLHTFPS 2408 (2439)
T ss_pred             hhhcCch
Confidence            8998887

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=1.2e-06  Score=94.23  Aligned_cols=189  Identities=8%  Similarity=-0.013  Sum_probs=117.0

Q ss_pred             eEEEEEcCCCCe-EEEEcC---CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEe
Q 005342          395 SRESTSLPDADS-AVCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWK  469 (701)
Q Consensus       395 V~~l~~spdg~~-l~s~s~---d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd  469 (701)
                      .....|+|||+. ++..+.   +..|.++|+.    +++...+..    ..+......|+|||+.++.... ++.-.+| 
T Consensus       190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~----tg~~~~lt~----~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy-  260 (419)
T PRK04043        190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLY----TGKKEKIAS----SQGMLVVSDVSKDGSKLLLTMAPKGQPDIY-  260 (419)
T ss_pred             eEeEEECCCCCcEEEEEEccCCCCEEEEEECC----CCcEEEEec----CCCcEEeeEECCCCCEEEEEEccCCCcEEE-
Confidence            557899999985 664433   3567788886    666555542    3455667789999998775543 4444444 


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC----CeEEEEeCCCCcEEEEecC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG----GKISIFSLETFQTLATFAN  543 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd----g~I~iwd~~~~~~~~~~~~  543 (701)
                                        +++..++....  +. .+........|+  |+.|+..++    ..|+++|+.+++..+....
T Consensus       261 ------------------~~dl~~g~~~~--LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~  319 (419)
T PRK04043        261 ------------------LYDTNTKTLTQ--IT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH  319 (419)
T ss_pred             ------------------EEECCCCcEEE--cc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence                              22545555332  21 122223345688  877777663    2789999988776443321


Q ss_pred             CCCCeEEEEEcCCC-eEEEEeCC---------CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeE
Q 005342          544 PPPIATYFILLPQD-LFAFGFDD---------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQL  610 (701)
Q Consensus       544 ~~~~i~~l~~spdg-~l~~gs~d---------g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I  610 (701)
                       ..  ....|+||| .++..+..         ..|++.|+.++... .+... .......|+|||++++..+.+   ..+
T Consensus       320 -g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L  394 (419)
T PRK04043        320 -GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSAL  394 (419)
T ss_pred             -CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEE
Confidence             11  134899999 66555433         37899999888653 34432 233457999999988765543   246


Q ss_pred             EEEECCCC
Q 005342          611 CVWDAVGW  618 (701)
Q Consensus       611 ~vwd~~~g  618 (701)
                      .+.++...
T Consensus       395 ~~~~l~g~  402 (419)
T PRK04043        395 GIIRLNYN  402 (419)
T ss_pred             EEEecCCC
Confidence            77777664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.83  E-value=3.2e-06  Score=90.70  Aligned_cols=289  Identities=9%  Similarity=-0.013  Sum_probs=157.0

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGD  381 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D  381 (701)
                      +.+.-+|..+|+.+...+-......  ......+     +.++.+..+|..+|+.+-..        .+.+..       
T Consensus        75 g~v~a~d~~tG~~~W~~~~~~~~~~--~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~--------~~~~~~-------  137 (377)
T TIGR03300        75 GTVVALDAETGKRLWRVDLDERLSG--GVGADGGLVFVGTEKGEVIALDAEDGKELWRA--------KLSSEV-------  137 (377)
T ss_pred             CeEEEEEccCCcEeeeecCCCCccc--ceEEcCCEEEEEcCCCEEEEEECCCCcEeeee--------ccCcee-------
Confidence            4566677788888876654433222  2222222     66889999999888876541        111100       


Q ss_pred             CCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCC-CCEEEEEEecCCCEEEEE
Q 005342          382 DSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFG-GRVVRLIYSHSGDFLVAL  459 (701)
Q Consensus       382 ~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~-~~v~~l~~spdg~~l~s~  459 (701)
                                   ......  .+..++.++.++.+..||..    +++. +.......... ....+.... + ..++.+
T Consensus       138 -------------~~~p~v--~~~~v~v~~~~g~l~a~d~~----tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~  196 (377)
T TIGR03300       138 -------------LSPPLV--ANGLVVVRTNDGRLTALDAA----TGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVG  196 (377)
T ss_pred             -------------ecCCEE--ECCEEEEECCCCeEEEEEcC----CCceeeEEccCCCceeecCCCCCEEE-C-CEEEEE
Confidence                         001111  24466777788999999987    4432 33221100000 000111111 2 356777


Q ss_pred             ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe-ecccCCCCCCe-EEEEecCCEEEEEe-CCeEEEEeCCCCc
Q 005342          460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSI-SCFALRGSHLFSAS-GGKISIFSLETFQ  536 (701)
Q Consensus       460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v-~~l~~s~~~l~s~s-dg~I~iwd~~~~~  536 (701)
                      +.+|.+..+|..++..            +|....+.... ...  .....+ .+..+.+..++.++ +|.++.||.++|+
T Consensus       197 ~~~g~v~ald~~tG~~------------~W~~~~~~~~g~~~~--~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~  262 (377)
T TIGR03300       197 FAGGKLVALDLQTGQP------------LWEQRVALPKGRTEL--ERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR  262 (377)
T ss_pred             CCCCEEEEEEccCCCE------------eeeeccccCCCCCch--hhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence            7788888886543321            12111000000 000  000001 11222356677777 8999999999998


Q ss_pred             EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342          537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RITCLAYSLSLNVLVSSGADAQLCVWD  614 (701)
Q Consensus       537 ~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~v~~spdg~~l~s~s~D~~I~vwd  614 (701)
                      .+......  .......  ++ .+++++.+|.++.+|..+++.+-....... ...+...  .+..+++++.+|.|+++|
T Consensus       263 ~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       263 VLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             EEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence            88776521  1222222  34 778888999999999999987765432111 1222222  466888999999999999


Q ss_pred             CCCCeeeeeeeeeeccCCCCCCCCCe-EEEEEcCCCCEEEEEecCeEEEE
Q 005342          615 AVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHPDQIHLLSIHEGQIDVY  663 (701)
Q Consensus       615 ~~~g~~~~~~~l~~~~~~~~~~~~~v-~~v~~spdg~~l~sg~Dg~I~iw  663 (701)
                      ..+|+.+....+.     .    ..+ .+..+ .++++++.+.||.|+.+
T Consensus       337 ~~tG~~~~~~~~~-----~----~~~~~sp~~-~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       337 REDGSFVARLKTD-----G----SGIASPPVV-VGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             CCCCCEEEEEEcC-----C----CccccCCEE-ECCEEEEEeCCceEEEe
Confidence            9998755322221     1    122 22222 34555555789988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=6.9e-07  Score=92.61  Aligned_cols=262  Identities=11%  Similarity=0.056  Sum_probs=162.1

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      =+.+.|||-|+||+|-... .|.+|--.+   -+++.++.      ...|.-+.|||+.+||++-+..-...-|+-    
T Consensus       213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~---f~r~~RF~------Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d----  278 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQ-GIALWGGES---FDRIQRFY------HPGVQFIDFSPNEKYLVTYSPEPIIVEEDD----  278 (698)
T ss_pred             eeeEEecCCceEEEEEecc-ceeeecCcc---HHHHHhcc------CCCceeeecCCccceEEEecCCccccCccc----
Confidence            3468999999999998884 478996542   33444422      356899999999999999776432222211    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccC--CCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAA--DPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATY  550 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~  550 (701)
                            ...-.+.+||..+|.+... +..  +....-.-+.||  ++++|.-....|.||+..+..++..-.-.-+.|..
T Consensus       279 ------~e~~~l~IWDI~tG~lkrs-F~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~  351 (698)
T KOG2314|consen  279 ------NEGQQLIIWDIATGLLKRS-FPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRD  351 (698)
T ss_pred             ------CCCceEEEEEccccchhcc-eeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccC
Confidence                  0111244556666664432 211  122222346777  77888777788999998775554433334567899


Q ss_pred             EEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC----------CCeEEEEE
Q 005342          551 FILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA----------DAQLCVWD  614 (701)
Q Consensus       551 l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~----------D~~I~vwd  614 (701)
                      ..|+|.+ .||.=+..     ..+.+..+.+++.+++-.-|.-.=-.+-|-.+|.+|+.--+          -..+-|+.
T Consensus       352 FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfr  431 (698)
T KOG2314|consen  352 FSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFR  431 (698)
T ss_pred             cccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEE
Confidence            9999999 77754332     26777888888777765544322234566678888875321          12344555


Q ss_pred             CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE--Ee--cCeEEEEECCC-C---ceeeeeee--eeEEEEEe
Q 005342          615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IH--EGQIDVYEAPT-L---NHTSQVLL--ISHIMFVQ  684 (701)
Q Consensus       615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s--g~--Dg~I~iwd~~~-g---~~~~~l~~--i~~~~fs~  684 (701)
                      ++... +....+. +       ...|...+|-|.|..+++  |.  ..++.+|.+++ +   ++++.++.  .+.+-|||
T Consensus       432 ireKd-Ipve~ve-l-------ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsP  502 (698)
T KOG2314|consen  432 IREKD-IPVEVVE-L-------KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSP  502 (698)
T ss_pred             eeccC-CCceeee-c-------chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcC
Confidence            54421 1111111 1       177899999999988876  43  46799998873 2   34555555  67778877


Q ss_pred             eE
Q 005342          685 IV  686 (701)
Q Consensus       685 ~~  686 (701)
                      -.
T Consensus       503 kG  504 (698)
T KOG2314|consen  503 KG  504 (698)
T ss_pred             CC
Confidence            53

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.82  E-value=1.1e-05  Score=80.98  Aligned_cols=217  Identities=15%  Similarity=0.127  Sum_probs=138.9

Q ss_pred             EEEEec-CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEE
Q 005342          446 RLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA  522 (701)
Q Consensus       446 ~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~  522 (701)
                      +..|.+ +|..+++-...+.|..|                     ++.++.......   . . ...+++.  +..++.+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~---------------------~~~~~~~~~~~~---~-~-~~G~~~~~~~g~l~v~   57 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRV---------------------DPDTGEVEVIDL---P-G-PNGMAFDRPDGRLYVA   57 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE---------------------ETTTTEEEEEES---S-S-EEEEEEECTTSEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEE---------------------ECCCCeEEEEec---C-C-CceEEEEccCCEEEEE
Confidence            567888 55554454457888877                     445555432111   1 1 5566666  6667777


Q ss_pred             eCCeEEEEeCCCCcEEEEecC-----CCCCeEEEEEcCCC-eEEEEeCC--------CcEEEEeCCCCceEEeecCCCCC
Q 005342          523 SGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKAKLKGHQNR  588 (701)
Q Consensus       523 sdg~I~iwd~~~~~~~~~~~~-----~~~~i~~l~~spdg-~l~~gs~d--------g~I~iwd~~~~~~~~~l~~h~~~  588 (701)
                      ..+.+.++|..+++.......     .....+.++++|+| +.++....        |.|+.++.. ++...... .-..
T Consensus        58 ~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~  135 (246)
T PF08450_consen   58 DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGF  135 (246)
T ss_dssp             ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESS
T ss_pred             EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cccc
Confidence            755566669988864433332     23456899999999 66665544        568888877 55444333 3456


Q ss_pred             eEEEEEecCCCEEE-EEeCCCeEEEEECCCCe--eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          589 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGWK--KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       589 V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~--~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                      .+.++|+|+++.|+ +-+..+.|..+++....  ......+..+....    +..-.+++.++|++.++. ..+.|.++|
T Consensus       136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----g~pDG~~vD~~G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP----GYPDGLAVDSDGNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS----CEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred             ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC----cCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence            79999999998664 66778899999986422  22222222222221    347789999999987775 688999999


Q ss_pred             CCCCceeeeeee----eeEEEEEeeEEeeeecceEEEEeC
Q 005342          665 APTLNHTSQVLL----ISHIMFVQIVVKFHSFKFFYVAVG  700 (701)
Q Consensus       665 ~~~g~~~~~l~~----i~~~~fs~~~~~f~~~~~~~~~~~  700 (701)
                      .. |+.+..+..    +++++|..     ...+..||.++
T Consensus       212 p~-G~~~~~i~~p~~~~t~~~fgg-----~~~~~L~vTta  245 (246)
T PF08450_consen  212 PD-GKLLREIELPVPRPTNCAFGG-----PDGKTLYVTTA  245 (246)
T ss_dssp             TT-SCEEEEEE-SSSSEEEEEEES-----TTSSEEEEEEB
T ss_pred             CC-ccEEEEEcCCCCCEEEEEEEC-----CCCCEEEEEeC
Confidence            86 998887765    77788741     23456677665

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.77  E-value=7.6e-08  Score=96.29  Aligned_cols=159  Identities=16%  Similarity=0.193  Sum_probs=108.2

Q ss_pred             CEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEecCCEEEE
Q 005342          443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALRGSHLFS  521 (701)
Q Consensus       443 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s~~~l~s  521 (701)
                      ....+..+|+++.++++..+....++++..+.                 +.-++... .+ ......++.+..+ ..+..
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~-----------------~~~kl~~~~~v-~~~~~ai~~~~~~-~sv~v  124 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENP-----------------KGAKLLDVSCV-PKRPTAISFIRED-TSVLV  124 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCC-----------------CcceeeeEeec-ccCcceeeeeecc-ceEEE
Confidence            34455677888888888888887777764432                 11111111 01 1112233333333 22222


Q ss_pred             E---e-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEe
Q 005342          522 A---S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYS  595 (701)
Q Consensus       522 ~---s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~s  595 (701)
                      +   + ...+.+|....+.+. .+-||-+.++.++++||+ +|+++..|..|++-....-..+..|. ||+..|..++.-
T Consensus       125 ~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~  203 (390)
T KOG3914|consen  125 ADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT  203 (390)
T ss_pred             EeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence            2   2 366777776655443 445799999999999999 99999999999998877666666554 699999999987


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          596 LSLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       596 pdg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                      ++ ..|+|||.|+++++||+.+|+...
T Consensus       204 ~~-~~LlS~sGD~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  204 DN-YLLLSGSGDKTLRLWDITSGKLLD  229 (390)
T ss_pred             cC-ceeeecCCCCcEEEEecccCCccc
Confidence            54 458999999999999999997553

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.75  E-value=8.2e-08  Score=96.04  Aligned_cols=150  Identities=15%  Similarity=0.178  Sum_probs=105.7

Q ss_pred             CCEEEEEe-CCeEEEEeCCCCc----EEEEecCCCCCeEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEeecCCC
Q 005342          516 GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQ  586 (701)
Q Consensus       516 ~~~l~s~s-dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg---~I~iwd~~~~~~~~~l~~h~  586 (701)
                      +++++++. +....++++....    ....+.. ...-+++.+..+. .+..+..-|   .+.+|....+... .+-||-
T Consensus        74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhv  151 (390)
T KOG3914|consen   74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PILGHV  151 (390)
T ss_pred             ceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-hhhhhh
Confidence            66777777 6676677765433    2223222 2223455555555 444444444   5556665555443 345799


Q ss_pred             CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEEC
Q 005342          587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA  665 (701)
Q Consensus       587 ~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~  665 (701)
                      +-++.|+|+||+++++++..|..|+|-....     ...++++.-||.   .-|..++.-++.. |++ |.|+++++||+
T Consensus       152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa-----~f~IesfclGH~---eFVS~isl~~~~~-LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPA-----TFVIESFCLGHK---EFVSTISLTDNYL-LLSGSGDKTLRLWDI  222 (390)
T ss_pred             hhhheeeecCCCCEEEEecCCceEEEEecCc-----ccchhhhccccH---hheeeeeeccCce-eeecCCCCcEEEEec
Confidence            9999999999999999999999999988876     355555666776   8899999887655 666 58999999999


Q ss_pred             CCCceeeeeee
Q 005342          666 PTLNHTSQVLL  676 (701)
Q Consensus       666 ~~g~~~~~l~~  676 (701)
                      .+|+++.++..
T Consensus       223 ~sgk~L~t~dl  233 (390)
T KOG3914|consen  223 TSGKLLDTCDL  233 (390)
T ss_pred             ccCCcccccch
Confidence            99999987765

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.74  E-value=2e-08  Score=91.67  Aligned_cols=130  Identities=22%  Similarity=0.269  Sum_probs=96.7

Q ss_pred             hHHHHHHHHhcCCHHHHHHHhcccc--cccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHH
Q 005342           45 NVHRFGEIVMNGEWEKAEKYLSAFT--KLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCE  122 (701)
Q Consensus        45 ~~~~~~~~i~~G~w~~~~~~l~~~~--~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~  122 (701)
                      ++..++++|++|+++.|++.++...  +...+   ..+.|.|+.|+|+|+|..++..+|+.+.|+.++|......+.++.
T Consensus         4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~---~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~   80 (145)
T PF10607_consen    4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRN---SSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKK   80 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcC---CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            3778999999999999999998763  22222   228899999999999999999999999999998774335666777


Q ss_pred             HHHHhccccchh--hhhccCCCCChhHHHHHHHHHHhhhccccccccccccccccchHHHHHHHHh
Q 005342          123 LAELLALKDLRE--NEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLI  186 (701)
Q Consensus       123 l~~~l~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~p~~RL~~Ll~q~  186 (701)
                      +..+|...+..+  .......- ....|+++++.+...+-.      ....|  +.+.|+.++++.
T Consensus        81 ~~~lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~------~~~~~--~~s~L~~~~~~g  137 (145)
T PF10607_consen   81 LMSLLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILK------SYGLP--KESPLEVILKAG  137 (145)
T ss_pred             HHHHHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHH------HhCcC--CCCHHHHHHHHH
Confidence            777887766432  11221111 447899999999998777      33333  357788888764

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.73  E-value=1.2e-05  Score=86.30  Aligned_cols=231  Identities=12%  Similarity=0.025  Sum_probs=134.3

Q ss_pred             CCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342          403 DADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN  481 (701)
Q Consensus       403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~  481 (701)
                      ++..++.++.++.+..+|..    +|+. ++...     ...+.+.... .+..++.++.+|.+..||..+++       
T Consensus       104 ~~~~v~v~~~~g~l~ald~~----tG~~~W~~~~-----~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~-------  166 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAE----DGKELWRAKL-----SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGE-------  166 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECC----CCcEeeeecc-----CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCc-------
Confidence            46778888889999999987    4443 33222     1222211111 24467777888999988653332       


Q ss_pred             cceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC----C------e-E
Q 005342          482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP----I------A-T  549 (701)
Q Consensus       482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~----~------i-~  549 (701)
                           .+|........   +  .... ..+....+..++.+. +|.+..+|.++|+.+........    .      + .
T Consensus       167 -----~~W~~~~~~~~---~--~~~~-~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~  235 (377)
T TIGR03300       167 -----RLWTYSRVTPA---L--TLRG-SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDG  235 (377)
T ss_pred             -----eeeEEccCCCc---e--eecC-CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCC
Confidence                 12221111000   0  0000 011122345666776 79999999999987765431100    0      0 1


Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342          550 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  629 (701)
Q Consensus       550 ~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~  629 (701)
                      +..+. ++.+++++.+|.++.||..+|+.+-.... .. .....  .++..++.++.||.++.+|..+|+.+-..  ..+
T Consensus       236 ~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~--~~~  308 (377)
T TIGR03300       236 DPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKN--DEL  308 (377)
T ss_pred             ccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcc--ccc
Confidence            11121 23777788899999999999987765542 11 11222  24667888889999999999998643211  101


Q ss_pred             cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          630 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       630 ~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      . +     ....+...  .+..++++ .+|.++++|..+|+.+..++.
T Consensus       309 ~-~-----~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       309 K-Y-----RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             c-C-----CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            1 1     11122222  35566665 799999999999999888774

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.73  E-value=2.7e-08  Score=97.24  Aligned_cols=170  Identities=16%  Similarity=0.159  Sum_probs=122.9

Q ss_pred             Eec----CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-----ceEEee
Q 005342          513 ALR----GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-----KTKAKL  582 (701)
Q Consensus       513 ~~s----~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-----~~~~~l  582 (701)
                      +|+    |..+.+|.+..|-+-|+++|.. +.|. ..+.|.++.|...+ ++..|+.+|.|..+|++.+     .+.+.+
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl  295 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL  295 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence            566    5555555588999999988754 3343 56778888999878 9999999999999999875     345555


Q ss_pred             cCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeE
Q 005342          583 KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI  660 (701)
Q Consensus       583 ~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I  660 (701)
                      . |.+.|+++..-. ++++|.+.+.+|+|++||.+.-+  +.+.+. -..||... ..-.-+...+....+++ |+|...
T Consensus       296 y-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K--~~~~V~-qYeGHvN~-~a~l~~~v~~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  296 Y-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK--CKKSVM-QYEGHVNL-SAYLPAHVKEEEGSIFSVGDDCYT  370 (425)
T ss_pred             E-cCcchhhhhhhccccceEeeccCcCceeEeeehhhh--ccccee-eeeccccc-ccccccccccccceEEEccCeeEE
Confidence            4 888999987666 78899999999999999998743  212233 12255411 11122334455555655 699999


Q ss_pred             EEEECCCCceeeeeee--------eeEEEEEeeEEee
Q 005342          661 DVYEAPTLNHTSQVLL--------ISHIMFVQIVVKF  689 (701)
Q Consensus       661 ~iwd~~~g~~~~~l~~--------i~~~~fs~~~~~f  689 (701)
                      +||.+..|+++.+++.        +.+++|+....++
T Consensus       371 RiWsl~~ghLl~tipf~~s~~e~d~~sv~~~sr~~k~  407 (425)
T KOG2695|consen  371 RIWSLDSGHLLCTIPFPYSASEVDIPSVAFDSRLGKA  407 (425)
T ss_pred             EEEecccCceeeccCCCCccccccccceehhcccccc
Confidence            9999999999999987        6677776655544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.73  E-value=4.8e-06  Score=97.58  Aligned_cols=255  Identities=14%  Similarity=0.167  Sum_probs=154.4

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |.++.|-++...++.+..+|.|.+...+.......+..+-    .-...|.+++||||+..++..+.+|++.+.+-.-..
T Consensus        78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG----~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~  153 (928)
T PF04762_consen   78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG----SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP  153 (928)
T ss_pred             EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE----EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence            8899999999999999999999999332111133332222    135789999999999999999999988886432111


Q ss_pred             c--------cccc--ccc-cee--eEEeeCCCCeEEe-----eccc---C---CCCCCeEEEEec--CCEEEEEe-C---
Q 005342          475 Q--------SLEE--ENV-NME--SQLYQPSSKLVMT-----NDIA---A---DPKDSISCFALR--GSHLFSAS-G---  524 (701)
Q Consensus       475 ~--------~~g~--~~~-~~~--i~~~d~~~~~~~~-----~~~~---~---~~~~~v~~l~~s--~~~l~s~s-d---  524 (701)
                      .        ..|.  .+. .+.  -.-|.-..|+...     ....   .   .....-..++|-  |.++|+.+ +   
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~  233 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET  233 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence            1        0000  000 000  0000000111000     0000   0   023344577887  88988765 2   


Q ss_pred             ---CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCceEEeec----CCCCCeEEEE
Q 005342          525 ---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLK----GHQNRITCLA  593 (701)
Q Consensus       525 ---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~---dg~I~iwd~~~~~~~~~l~----~h~~~V~~v~  593 (701)
                         ..++||+-+ |....+-..-.+--.+++|.|.| +||+...   ...|.+|. ++|-.-..|.    .....|..+.
T Consensus       234 ~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~  311 (928)
T PF04762_consen  234 GSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELA  311 (928)
T ss_pred             CceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEE
Confidence               478999975 66554444333344689999999 8888765   34677777 4443333332    3456899999


Q ss_pred             EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEEE-ecCeEEE
Q 005342          594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDV  662 (701)
Q Consensus       594 ~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~sg-~Dg~I~i  662 (701)
                      |++|+..||..-.|. |.+|...+..-.....+. +...     ..+..+.|+|.. ..|... .+|.+..
T Consensus       312 Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~-~~~~-----~~~~~~~Wdpe~p~~L~v~t~~g~~~~  375 (928)
T PF04762_consen  312 WNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR-FSSS-----ESVNFVKWDPEKPLRLHVLTSNGQYEI  375 (928)
T ss_pred             ECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE-ccCC-----CCCCceEECCCCCCEEEEEecCCcEEE
Confidence            999999999877665 999999987544334444 2222     345569999964 334443 4455544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.70  E-value=2.1e-06  Score=81.51  Aligned_cols=197  Identities=8%  Similarity=-0.062  Sum_probs=124.5

Q ss_pred             CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeE---EEEecCCEEEEEe-CCeEE
Q 005342          453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS---CFALRGSHLFSAS-GGKIS  528 (701)
Q Consensus       453 g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~---~l~~s~~~l~s~s-dg~I~  528 (701)
                      ..+|+.|+..|...+|...++                     +.... +...|...|+   ..+-+...+..++ |.+++
T Consensus        84 c~~la~gG~~g~fd~~~~~tn---------------------~~h~~-~cd~snn~v~~~~r~cd~~~~~~i~sndht~k  141 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTN---------------------DGHLY-QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGK  141 (344)
T ss_pred             ccEEEeccccceeeeecccCc---------------------cccee-eecccccchhhhhhhcccccceeeccCCccee
Confidence            347899999999999966433                     21100 1012222221   1112222344445 77777


Q ss_pred             EEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-c-eEE-eecCCCCCeEEEEEecCCCEEEEE
Q 005342          529 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-K-TKA-KLKGHQNRITCLAYSLSLNVLVSS  604 (701)
Q Consensus       529 iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~-~~~-~l~~h~~~V~~v~~spdg~~l~s~  604 (701)
                      +.++..+..........-.+.++++++|+ +.++.+....|..|.+... + .++ .....+..-.+..|+.....+|++
T Consensus       142 ~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~  221 (344)
T KOG4532|consen  142 TMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVV  221 (344)
T ss_pred             EEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEE
Confidence            77775443222221112347899999999 9999999999999988653 2 233 122233445778999988999999


Q ss_pred             eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC--EEEEE-ecCeEEEEECCCCceeeeee
Q 005342          605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI--HLLSI-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       605 s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~--~l~sg-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      +.||++.|||++...... ....+-..+|.   +.+..+.|+|.|.  +|..+ +-+.+.+-|+++++..+.+.
T Consensus       222 ~Qdg~~~I~DVR~~~tpm-~~~sstrp~hn---Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  222 FQDGTCAIYDVRNMATPM-AEISSTRPHHN---GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             ecCCcEEEEEecccccch-hhhcccCCCCC---CceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            999999999999843211 11111222444   9999999999764  34445 67889999999988766553

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.68  E-value=2.3e-07  Score=87.53  Aligned_cols=148  Identities=18%  Similarity=0.188  Sum_probs=96.2

Q ss_pred             EecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeC---
Q 005342          449 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASG---  524 (701)
Q Consensus       449 ~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sd---  524 (701)
                      .+--++.+++++.||.+.+.+.+..                    -+++.+ +...|.+....-..+ ++.+.++.-   
T Consensus        97 ~s~~~t~V~~~~~dg~~~v~s~~~~--------------------~~~~~~-i~~~~~~~as~~~~~~~~~i~s~~~g~~  155 (319)
T KOG4714|consen   97 CTMTDNRVCIGYADGSLAVFSTDKD--------------------LALMSR-IPSIHSGSASRKICRHGNSILSGGCGNW  155 (319)
T ss_pred             ccccCCceEecCCCceEEEEechHH--------------------Hhhhhh-cccccccccccceeecccEEecCCcceE
Confidence            3444567899999999999865220                    001100 101111111111122 555554432   


Q ss_pred             ---CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-EEeecCCCCCeEEEEEec-C
Q 005342          525 ---GKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSL-S  597 (701)
Q Consensus       525 ---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~v~~sp-d  597 (701)
                         +..+.|+++..+....-......|++++-+|..  .+++|+.||.+-+||.+.... ...++.|+.+++.+-|+| +
T Consensus       156 n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~  235 (319)
T KOG4714|consen  156 NAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN  235 (319)
T ss_pred             eeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC
Confidence               445666665433221111123348999999987  899999999999999998643 456678999999999999 6


Q ss_pred             CCEEEEEeCCCeEEEEECCC
Q 005342          598 LNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       598 g~~l~s~s~D~~I~vwd~~~  617 (701)
                      +..|.++++||.+--||..+
T Consensus       236 p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  236 PEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             chheeEecCCCcEEEEcCCC
Confidence            77999999999999999885

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.67  E-value=8.1e-06  Score=81.33  Aligned_cols=217  Identities=14%  Similarity=0.031  Sum_probs=127.7

Q ss_pred             CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC
Q 005342          413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS  492 (701)
Q Consensus       413 d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~  492 (701)
                      +|.|..||..+   ....+...+  ........+. ..+++..+++++.++.+..||.                     .
T Consensus         2 ~g~l~~~d~~t---G~~~W~~~~--~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~---------------------~   54 (238)
T PF13360_consen    2 DGTLSALDPRT---GKELWSYDL--GPGIGGPVAT-AVPDGGRVYVASGDGNLYALDA---------------------K   54 (238)
T ss_dssp             TSEEEEEETTT---TEEEEEEEC--SSSCSSEEET-EEEETTEEEEEETTSEEEEEET---------------------T
T ss_pred             CCEEEEEECCC---CCEEEEEEC--CCCCCCccce-EEEeCCEEEEEcCCCEEEEEEC---------------------C
Confidence            57788888862   333344332  1111222222 3445667888889999999854                     5


Q ss_pred             CCeEEe-ecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEe-cCCC---CCeEEEEEcCCC-eEEEEeCC
Q 005342          493 SKLVMT-NDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATF-ANPP---PIATYFILLPQD-LFAFGFDD  565 (701)
Q Consensus       493 ~~~~~~-~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~-~~~~---~~i~~l~~spdg-~l~~gs~d  565 (701)
                      +|+.+- ..+.......   ....+..+++++ ++.++.+|..+|+.+... ....   ..........++ .++++..+
T Consensus        55 tG~~~W~~~~~~~~~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (238)
T PF13360_consen   55 TGKVLWRFDLPGPISGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS  131 (238)
T ss_dssp             TSEEEEEEECSSCGGSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC
T ss_pred             CCCEEEEeeccccccce---eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc
Confidence            555332 1111111111   233366666666 899999999999998884 3221   111222333336 88888889


Q ss_pred             CcEEEEeCCCCceEEeecCCCCC----------eEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCC
Q 005342          566 SSILVHCPCTKKTKAKLKGHQNR----------ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP  635 (701)
Q Consensus       566 g~I~iwd~~~~~~~~~l~~h~~~----------V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~  635 (701)
                      +.|+.+|+++|+.+.........          +..-....++ .+..++.++.+..+|+.+|+..-... .        
T Consensus       132 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~--------  201 (238)
T PF13360_consen  132 GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I--------  201 (238)
T ss_dssp             SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S--------
T ss_pred             CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C--------
Confidence            99999999999998777654322          1122222244 67777777754444999997332111 1        


Q ss_pred             CCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342          636 ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       636 ~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~  672 (701)
                        ..+... ..+++..+++. .++.+..||+.+|+.+-
T Consensus       202 --~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  202 --SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             --S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             --CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence              222221 34667777765 69999999999998764

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.66  E-value=2.4e-05  Score=91.79  Aligned_cols=200  Identities=13%  Similarity=0.135  Sum_probs=133.5

Q ss_pred             CCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec--
Q 005342          440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR--  515 (701)
Q Consensus       440 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s--  515 (701)
                      ..+.|.++.|.++...++.+..+|.|.+...+.                 ++.+..  ++     +.-...|.+++||  
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~-----------------~~~~~~~E~V-----G~vd~GI~a~~WSPD  131 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDP-----------------DPDEDEIEIV-----GSVDSGILAASWSPD  131 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccC-----------------CCCCceeEEE-----EEEcCcEEEEEECCC
Confidence            457899999999999999999999999983311                 112222  22     2345689999999  


Q ss_pred             CCEEEEEe-CCeEEEEeCCCCcEE------------------------EEecC------------------------CCC
Q 005342          516 GSHLFSAS-GGKISIFSLETFQTL------------------------ATFAN------------------------PPP  546 (701)
Q Consensus       516 ~~~l~s~s-dg~I~iwd~~~~~~~------------------------~~~~~------------------------~~~  546 (701)
                      ++.++..+ ++++.+.+- +...+                        ..|.|                        ...
T Consensus       132 ~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd  210 (928)
T PF04762_consen  132 EELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDD  210 (928)
T ss_pred             cCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCC
Confidence            77777777 777766542 11111                        11110                        122


Q ss_pred             CeEEEEEcCCC-eEEEEeC---C---CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECC
Q 005342          547 IATYFILLPQD-LFAFGFD---D---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAV  616 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~---d---g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~---D~~I~vwd~~  616 (701)
                      .-..++|-.|| ++|+++-   .   ..+++|+. +|.+..+-..-.+--.+++|.|.|+++|+.-.   ...|.+|...
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN  289 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN  289 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence            34678999999 9888875   3   37999994 57665544433344457899999999998764   4567777755


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN  669 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~  669 (701)
                      . .+.....++ +. ..   ...|..+.|++|+..||.-....|.+|-..+-.
T Consensus       290 G-LrhgeF~l~-~~-~~---~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYH  336 (928)
T PF04762_consen  290 G-LRHGEFTLR-FD-PE---EEKVIELAWNSDSEILAVWLEDRVQLWTRSNYH  336 (928)
T ss_pred             C-cEeeeEecC-CC-CC---CceeeEEEECCCCCEEEEEecCCceEEEeeCCE
Confidence            4 222223333 21 11   278999999999999999644459999887754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.65  E-value=9e-06  Score=97.15  Aligned_cols=210  Identities=10%  Similarity=0.017  Sum_probs=131.3

Q ss_pred             eEEEEEcCCCCeEEEEc-CCCcEEEEeccccCCCCceeEeecC------CCC-------CCCCEEEEEEec-CCCEEEEE
Q 005342          395 SRESTSLPDADSAVCAK-SLEKSVNLKLQLINEPSECRTLLLP------DNS-------FGGRVVRLIYSH-SGDFLVAL  459 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s-~d~~v~iw~~~~~~~~~~~~~l~~~------~~~-------~~~~v~~l~~sp-dg~~l~s~  459 (701)
                      ...+++.+++..|+.+. .++.|+.+|..    ++....+.-.      ..+       .-.....++++| ++..+++.
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~----~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad  701 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFV----NETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM  701 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecC----CCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence            56789999988665554 45778989886    4433332210      000       012346899999 45555666


Q ss_pred             ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeec--c-cCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeC
Q 005342          460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTND--I-AADPKDSISCFALR--GSHLFSAS--GGKISIFSL  532 (701)
Q Consensus       460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~--~-~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~  532 (701)
                      +.++.|++||..++..           ..+... |......  . ....-.....++++  |+.|+++.  ++.|++||+
T Consensus       702 ~~~~~I~v~d~~~g~v-----------~~~~G~-G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~  769 (1057)
T PLN02919        702 AGQHQIWEYNISDGVT-----------RVFSGD-GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDL  769 (1057)
T ss_pred             CCCCeEEEEECCCCeE-----------EEEecC-CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence            6789999998744321           111100 0000000  0 00111345678888  66565554  699999999


Q ss_pred             CCCcEEEEecC-------------C--------CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-------
Q 005342          533 ETFQTLATFAN-------------P--------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-------  583 (701)
Q Consensus       533 ~~~~~~~~~~~-------------~--------~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-------  583 (701)
                      .++.......+             .        -.....++++++| .+++.+.++.|++||..++.......       
T Consensus       770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~  849 (1057)
T PLN02919        770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK  849 (1057)
T ss_pred             CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCC
Confidence            87653211100             0        0123689999999 88888899999999998776543221       


Q ss_pred             ------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          584 ------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       584 ------~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                            ++-.....++++++|+++++.+.+++|++||+.+++.
T Consensus       850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        850 DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                  1112567899999999999999999999999998754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.62  E-value=1e-05  Score=76.89  Aligned_cols=232  Identities=12%  Similarity=-0.009  Sum_probs=142.5

Q ss_pred             CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEE-ecCCCEEEEEECCCcEEEEecCCCCcccccccc
Q 005342          404 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY-SHSGDFLVALTQTATHKLWKWQSNKQSLEEENV  482 (701)
Q Consensus       404 g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~-spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~  482 (701)
                      ..+||.|+..|...+|...    +.+.+... - ..+...|+-+.= .-..-.+..++.|.++++.+++.          
T Consensus        84 c~~la~gG~~g~fd~~~~~----tn~~h~~~-c-d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~----------  147 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACN----TNDGHLYQ-C-DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG----------  147 (344)
T ss_pred             ccEEEeccccceeeeeccc----Ccccceee-e-cccccchhhhhhhcccccceeeccCCcceeEEEEec----------
Confidence            4588999999999999987    33222101 0 112222221111 11122466778888888887733          


Q ss_pred             ceeeEEeeCCCCe-EEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc--EEEEe-cCCCCCeEEEEEcC
Q 005342          483 NMESQLYQPSSKL-VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATF-ANPPPIATYFILLP  555 (701)
Q Consensus       483 ~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~--~~~~~-~~~~~~i~~l~~sp  555 (701)
                               .+.. .+.  .   ..-.+.+++++  ++++++.+ ...|..|.+....  .+... ......-.+.+|+.
T Consensus       148 ---------~s~~~~~h--~---~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~  213 (344)
T KOG4532|consen  148 ---------DSNKFAVH--N---QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE  213 (344)
T ss_pred             ---------Ccccceee--c---cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence                     2222 221  1   11237788888  88888888 5889999886532  23322 22344557889999


Q ss_pred             CC-eEEEEeCCCcEEEEeCCCCceEE-----eecCCCCCeEEEEEecCCC--EEEEEeCCCeEEEEECCCCeeeeeeeee
Q 005342          556 QD-LFAFGFDDSSILVHCPCTKKTKA-----KLKGHQNRITCLAYSLSLN--VLVSSGADAQLCVWDAVGWKKLCSKFLH  627 (701)
Q Consensus       556 dg-~l~~gs~dg~I~iwd~~~~~~~~-----~l~~h~~~V~~v~~spdg~--~l~s~s~D~~I~vwd~~~g~~~~~~~l~  627 (701)
                      .. .+|+++.||++.|||++......     +-..|.+.+..+.|+|.|.  +|...-.-+.+.+-|++++.......+.
T Consensus       214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~  293 (344)
T KOG4532|consen  214 NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP  293 (344)
T ss_pred             CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence            99 99999999999999998754322     2234889999999998665  4555555678999999998543222211


Q ss_pred             -eccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342          628 -SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT  667 (701)
Q Consensus       628 -~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~  667 (701)
                       .....|.  ...+..-.|+.++..+.+...-.+.-|++.+
T Consensus       294 ~d~~~~~~--tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~s  332 (344)
T KOG4532|consen  294 DDVERKHN--TQHIFGTNFNNENESNDVKNELQGAEYNILS  332 (344)
T ss_pred             cccccccc--ccccccccccCCCcccccccchhhheeeccc
Confidence             0111111  1446777788777766665444555666643

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=3.2e-07  Score=90.96  Aligned_cols=119  Identities=14%  Similarity=0.147  Sum_probs=100.6

Q ss_pred             hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCc--------hhHHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhh
Q 005342           13 YTHLITLIMKFLEEENFKESLQALEQESKIF--------FNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFEL   84 (701)
Q Consensus        13 ~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~--------~~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l   84 (701)
                      |+-+-|+|+.+|--+||.+||..|-++|++.        .++..+++++++|+...|+.--+.-+..-. ..+..+.|.+
T Consensus       115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~l  193 (389)
T KOG0396|consen  115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQL  193 (389)
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHH
Confidence            5668899999999999999999999999998        248889999999999888877754421111 1112378999


Q ss_pred             hhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhccccc
Q 005342           85 RKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDL  132 (701)
Q Consensus        85 ~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~~~~  132 (701)
                      +.|+|+||++.+++.+|+.+.++.++|.+......++....+|.++..
T Consensus       194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~  241 (389)
T KOG0396|consen  194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY  241 (389)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence            999999999999999999999999999988789999999999998764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.60  E-value=3.7e-07  Score=97.37  Aligned_cols=250  Identities=12%  Similarity=0.089  Sum_probs=164.5

Q ss_pred             CceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC--EEEEEECCCcEEEEec
Q 005342          393 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD--FLVALTQTATHKLWKW  470 (701)
Q Consensus       393 ~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~  470 (701)
                      ..++++..+|.|+-+|.++.-| +.+-|+.+.-..-  +-+.   ....-.|....|+|...  +-++......-.+|++
T Consensus        25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~pp--r~l~---h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl   98 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPP--RWLH---HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL   98 (1081)
T ss_pred             CcccceeeccccchhhhhhhcC-eEEEeccCCCCCc--eeee---ccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence            3378899999999999999866 4455665321111  1111   11245677788887643  4444444555667876


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc-EEEEecCCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ-TLATFANPP  545 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~-~~~~~~~~~  545 (701)
                      ..                   .+..-+...+ .+|...|+++.|.   ...+++++ |-.++.||+++.. .+..+..-.
T Consensus        99 A~-------------------ss~~aIef~l-hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~  158 (1081)
T KOG0309|consen   99 AK-------------------SSSNAIEFVL-HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR  158 (1081)
T ss_pred             hc-------------------CCccceEEEE-ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc
Confidence            22                   2222222212 4899999999999   66789999 9999999998754 455554445


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                      .....+.|+... .+.+.+....|++||.+.| .++..+++|...|+.++|+. -...+.+++.|++|+.||........
T Consensus       159 s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~  238 (1081)
T KOG0309|consen  159 SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES  238 (1081)
T ss_pred             ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence            667889999877 7777788889999999875 56788999999999999976 33467889999999999988743221


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE--E-ecCeE---------EEEECCC-Cceeeeeee
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQI---------DVYEAPT-LNHTSQVLL  676 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s--g-~Dg~I---------~iwd~~~-g~~~~~l~~  676 (701)
                      ...+.   .     ..+|+.-.+-|-|.-.+.  . .+..+         ..|+..+ .+.++++.|
T Consensus       239 ~~~vt---t-----~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G  297 (1081)
T KOG0309|consen  239 KRTVT---T-----NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG  297 (1081)
T ss_pred             ceecc---c-----cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC
Confidence            11111   1     156666677775443332  1 22233         3444433 356777776

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.59  E-value=1.7e-07  Score=63.98  Aligned_cols=39  Identities=33%  Similarity=0.579  Sum_probs=36.9

Q ss_pred             CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342          576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD  614 (701)
Q Consensus       576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd  614 (701)
                      ++++.++.+|.+.|++++|+|++++|++|+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.57  E-value=2.5e-07  Score=98.68  Aligned_cols=228  Identities=16%  Similarity=0.143  Sum_probs=149.7

Q ss_pred             CCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----
Q 005342          441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----  515 (701)
Q Consensus       441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----  515 (701)
                      .+.+.++..+|.|+-++.++.-|...+ |+.                  ++-+.-.+   +.....-.|-...|+     
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i~-dld------------------~p~~ppr~---l~h~tpw~vad~qws~h~a~   81 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYII-DLD------------------DPFTPPRW---LHHITPWQVADVQWSPHPAK   81 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEEE-ecc------------------CCCCCcee---eeccCcchhcceecccCCCC
Confidence            467788899999999998888665443 441                  11111111   111112235556676     


Q ss_pred             CCEEEEEeCCeEEEEeCCCC---cEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCe
Q 005342          516 GSHLFSASGGKISIFSLETF---QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRI  589 (701)
Q Consensus       516 ~~~l~s~sdg~I~iwd~~~~---~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V  589 (701)
                      ..++++.+...-.+|++...   ...-.+-+|...|+.+.|+|..  .+++++-|..++.||+++. ..+..+..-....
T Consensus        82 ~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a  161 (1081)
T KOG0309|consen   82 PYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA  161 (1081)
T ss_pred             ceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence            44566666777788987532   2333456889999999999999  9999999999999999875 3455555555567


Q ss_pred             EEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-CCEEEE-EecCeEEEEECC
Q 005342          590 TCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLS-IHEGQIDVYEAP  666 (701)
Q Consensus       590 ~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-g~~l~s-g~Dg~I~iwd~~  666 (701)
                      ..|.|+. ++..+| .+..+.|++||.+.|.    .++..+. +|.   ..|+++.|..- ...+.+ +.|++|+.||..
T Consensus       162 sqVkwnyk~p~vla-sshg~~i~vwd~r~gs----~pl~s~K-~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLA-SSHGNDIFVWDLRKGS----TPLCSLK-GHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             ceeeecccCcchhh-hccCCceEEEeccCCC----cceEEec-ccc---eeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            8899998 455554 5666789999999874    4454344 465   88999998764 233444 589999999997


Q ss_pred             CCce--eeeeeeeeEEEEEeeEEeeeecceEEEEeC
Q 005342          667 TLNH--TSQVLLISHIMFVQIVVKFHSFKFFYVAVG  700 (701)
Q Consensus       667 ~g~~--~~~l~~i~~~~fs~~~~~f~~~~~~~~~~~  700 (701)
                      +...  -++.. -....|-++.+.|...+.+|.-+|
T Consensus       233 kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G  267 (1081)
T KOG0309|consen  233 KSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVG  267 (1081)
T ss_pred             ccccccceecc-ccCcceeccccccCceeEeccccC
Confidence            5432  12221 223445556666666665555444

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=1.9e-07  Score=96.27  Aligned_cols=168  Identities=14%  Similarity=0.143  Sum_probs=123.1

Q ss_pred             CCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC-------CcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEE
Q 005342          503 ADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH  571 (701)
Q Consensus       503 ~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~-------~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iw  571 (701)
                      .+|...|..++--  .+-+++++ |++|++|.++.       ..+..+++.|+.+|.++.|-.+. .++  +.||.|++|
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlW  809 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLW  809 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCcceee
Confidence            4788888776544  66788888 99999999863       23677889999999999998887 655  568999999


Q ss_pred             eCCCCceEEeecC--CCCCeEEEEEec--CCCEEEE-EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc
Q 005342          572 CPCTKKTKAKLKG--HQNRITCLAYSL--SLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH  646 (701)
Q Consensus       572 d~~~~~~~~~l~~--h~~~V~~v~~sp--dg~~l~s-~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s  646 (701)
                      |.--+.++..+..  ..+.+..+.--|  +...++. ++...+|+++|.+.++-.+...+.+-+ +.   ...+.+++..
T Consensus       810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~-~P---na~~R~iaVa  885 (1034)
T KOG4190|consen  810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP-GP---NALTRAIAVA  885 (1034)
T ss_pred             cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC-CC---chheeEEEec
Confidence            9877766553321  222333333334  4444444 478999999999998755544443222 22   2678999999


Q ss_pred             CCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          647 PDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       647 pdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      |.|++++++ ++|.|.+.|.++|+.+..+..
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrp  916 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRP  916 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence            999999998 899999999999998887654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.54  E-value=5.2e-05  Score=80.32  Aligned_cols=264  Identities=12%  Similarity=0.071  Sum_probs=155.4

Q ss_pred             CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEec
Q 005342          343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKL  421 (701)
Q Consensus       343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~  421 (701)
                      .+.+.|||+.+++.....          .                   . .. +....|||+|+.+|.... +.+.+++.
T Consensus        22 ~~~y~i~d~~~~~~~~l~----------~-------------------~-~~~~~~~~~sP~g~~~~~v~~-~nly~~~~   70 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLT----------P-------------------P-PPKLQDAKWSPDGKYIAFVRD-NNLYLRDL   70 (353)
T ss_dssp             EEEEEEEETTTTEEEESS------------------------------E-ETTBSEEEE-SSSTEEEEEET-TEEEEESS
T ss_pred             ceeEEEEecCCCceEECc----------C-------------------C-ccccccceeecCCCeeEEEec-CceEEEEC
Confidence            578899999997765551          1                   0 12 557899999999999876 78999987


Q ss_pred             cccCCCCceeEeecCCCCC----------------CCCEEEEEEecCCCEEEEEECC-CcEEEEe---cCCCC--c----
Q 005342          422 QLINEPSECRTLLLPDNSF----------------GGRVVRLIYSHSGDFLVALTQT-ATHKLWK---WQSNK--Q----  475 (701)
Q Consensus       422 ~~~~~~~~~~~l~~~~~~~----------------~~~v~~l~~spdg~~l~s~s~d-g~i~vwd---~~~~~--~----  475 (701)
                      .    ++...+++.  .+.                -+.-..+.|||||++|+....| ..+..+.   .....  .    
T Consensus        71 ~----~~~~~~lT~--dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~  144 (353)
T PF00930_consen   71 A----TGQETQLTT--DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVE  144 (353)
T ss_dssp             T----TSEEEESES----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEE
T ss_pred             C----CCCeEEecc--ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccc
Confidence            6    444444432  110                1223578899999999988764 4444443   22221  1    


Q ss_pred             -----cccccccceeeEEeeCCCCeEEeeccc---CCCCCCeEEEEec--CCEEEEEe---C---CeEEEEeCCCCcEEE
Q 005342          476 -----SLEEENVNMESQLYQPSSKLVMTNDIA---ADPKDSISCFALR--GSHLFSAS---G---GKISIFSLETFQTLA  539 (701)
Q Consensus       476 -----~~g~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~v~~l~~s--~~~l~s~s---d---g~I~iwd~~~~~~~~  539 (701)
                           ..|.....+.+.+++..+++.......   ......+..+.|.  +..++..-   +   ..+.++|..++....
T Consensus       145 ~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~  224 (353)
T PF00930_consen  145 SIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV  224 (353)
T ss_dssp             EEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE
T ss_pred             ccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE
Confidence                 456666777899999998875321121   1335678889998  55244332   2   357778887776433


Q ss_pred             EecC-CCCC---eEEEEEc-CCC--eEEEEeCCC--cEEEEeCCCCceEEeecCCCCCeEE-EEEecCCCEEE-EEeC--
Q 005342          540 TFAN-PPPI---ATYFILL-PQD--LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITC-LAYSLSLNVLV-SSGA--  606 (701)
Q Consensus       540 ~~~~-~~~~---i~~l~~s-pdg--~l~~gs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~-v~~spdg~~l~-s~s~--  606 (701)
                      .... ....   .....+. +++  ++.....+|  .|++++...+... .+....-.|+. +.|+++++.|. ++..  
T Consensus       225 ~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~  303 (353)
T PF00930_consen  225 VLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDN  303 (353)
T ss_dssp             EEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred             EEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCC
Confidence            3221 1222   2355554 666  666666888  5677777666543 45544556755 68888877654 4444  


Q ss_pred             --CCeEEEEECC-CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          607 --DAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       607 --D~~I~vwd~~-~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                        ...++.-++. .++..+      +....    .....+.|||+|++++.
T Consensus       304 p~~r~lY~v~~~~~~~~~~------LT~~~----~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  304 PGERHLYRVSLDSGGEPKC------LTCED----GDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             TTSBEEEEEETTETTEEEE------SSTTS----STTEEEEE-TTSSEEEE
T ss_pred             CCceEEEEEEeCCCCCeEe------ccCCC----CCceEEEECCCCCEEEE
Confidence              3367777777 654332      22222    22269999999999886

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.54  E-value=3e-05  Score=75.05  Aligned_cols=195  Identities=12%  Similarity=0.023  Sum_probs=110.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC---CCCCCEEEEEEecCC------CEEEEEECCCcE
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN---SFGGRVVRLIYSHSG------DFLVALTQTATH  465 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~---~~~~~v~~l~~spdg------~~l~s~s~dg~i  465 (701)
                      =+.++||||+..||.+...|+|+++|+.    +..+..+.....   .-...|..+.|.+-.      ..|++...+|.+
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~----g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L  121 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLM----GSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL  121 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecc----cceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence            5579999999999999999999999996    555554432111   123456667665432      246667777888


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCC-eEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~  541 (701)
                      +-|-+..+.                .... +.....+.......|.++.++  .+.|++|+ ...      +++.    -
T Consensus       122 ~Sy~vs~gt----------------~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s  175 (282)
T PF15492_consen  122 RSYLVSVGT----------------NQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----S  175 (282)
T ss_pred             eeEEEEccc----------------CCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----c
Confidence            877542110                0111 111112333456789999999  45666665 211      0100    0


Q ss_pred             cCCCCCeEEEEEcCCC---eEEEEeCCCc------EEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342          542 ANPPPIATYFILLPQD---LFAFGFDDSS------ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV  612 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg---~l~~gs~dg~------I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v  612 (701)
                      ......+++-.+-.+.   ..++..+|+.      -.+|.+-+.+...........|..+..||||+.||+...+|.|.+
T Consensus       176 ~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsL  255 (282)
T PF15492_consen  176 KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSL  255 (282)
T ss_pred             cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEE
Confidence            0112223332222222   2222222221      123333322222211224568999999999999999999999999


Q ss_pred             EECCCCe
Q 005342          613 WDAVGWK  619 (701)
Q Consensus       613 wd~~~g~  619 (701)
                      |++.+=+
T Consensus       256 W~iPsL~  262 (282)
T PF15492_consen  256 WEIPSLR  262 (282)
T ss_pred             EecCcch
Confidence            9999843

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.51  E-value=8.7e-05  Score=74.13  Aligned_cols=167  Identities=16%  Similarity=0.127  Sum_probs=114.3

Q ss_pred             EEec--CCEEEEEe-C-----CeEEEEeCC-CCcEEEEecCCCCCeEEEEEcCCC-eEEEEe------------------
Q 005342          512 FALR--GSHLFSAS-G-----GKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGF------------------  563 (701)
Q Consensus       512 l~~s--~~~l~s~s-d-----g~I~iwd~~-~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs------------------  563 (701)
                      -.||  |++|++.- |     |.|-|||.. +.+.+..+..+.-....+.+.||| .|+++.                  
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            4567  88888764 3     899999998 667888888776667888999999 555542                  


Q ss_pred             CCCcEEEEeCCCCceEEe--e--cCCCCCeEEEEEecCCCEEEEEeCCC-------eEEEEECCCCeeeeeeeeee-ccC
Q 005342          564 DDSSILVHCPCTKKTKAK--L--KGHQNRITCLAYSLSLNVLVSSGADA-------QLCVWDAVGWKKLCSKFLHS-FQT  631 (701)
Q Consensus       564 ~dg~I~iwd~~~~~~~~~--l--~~h~~~V~~v~~spdg~~l~s~s~D~-------~I~vwd~~~g~~~~~~~l~~-~~~  631 (701)
                      .+.++...|..+|+++..  +  .-|...|..++++++|..++..-..|       -+.+++....  ........ ...
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~  213 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWR  213 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHH
Confidence            233577778889988876  4  22777899999999998666543332       2444433321  11011000 000


Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCceeeeeee--eeEEEEE
Q 005342          632 GLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQVLL--ISHIMFV  683 (701)
Q Consensus       632 ~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~~~~~l~~--i~~~~fs  683 (701)
                      ...   +.+-+|++++++.++++ + .-+.+.+||..+|+.+...+-  +.+++-.
T Consensus       214 ~l~---~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~  266 (305)
T PF07433_consen  214 RLN---GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPT  266 (305)
T ss_pred             hhC---CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeec
Confidence            111   77899999999998876 4 688999999999999887776  5555443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=2.3e-06  Score=86.78  Aligned_cols=260  Identities=11%  Similarity=-0.078  Sum_probs=169.1

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEE
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLW  468 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vw  468 (701)
                      .|.. |..+ +-.-.+++.+++-||.++.|.-...    ....+..-+..|...|.+++.+-+|..+.+.+. |..++++
T Consensus         7 mhrd~i~hv-~~tka~fiiqASlDGh~KFWkKs~i----sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    7 MHRDVITHV-FPTKAKFIIQASLDGHKKFWKKSRI----SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             cccceeeeE-eeehhheEEeeecchhhhhcCCCCc----cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence            4666 4443 3345579999999999999987521    111222122357788999999999999999787 9999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCC---EEEEEe--CCeEEEEeCCCCc--EEEEe
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS---HLFSAS--GGKISIFSLETFQ--TLATF  541 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~---~l~s~s--dg~I~iwd~~~~~--~~~~~  541 (701)
                      |++.-                |..++.-..  .   ..+.+..+.-.|.   .+++..  +|.+.++|-...-  ....-
T Consensus        82 DvEn~----------------DminmiKL~--~---lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk  140 (558)
T KOG0882|consen   82 DVENF----------------DMINMIKLV--D---LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK  140 (558)
T ss_pred             Eeecc----------------chhhhcccc--c---CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence            87442                222222110  1   1122211111131   344444  6899999965432  33333


Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC------CceEEeec---------CCCCCeEEEEEecCCCEEEEEe
Q 005342          542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT------KKTKAKLK---------GHQNRITCLAYSLSLNVLVSSG  605 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~------~~~~~~l~---------~h~~~V~~v~~spdg~~l~s~s  605 (701)
                      .-|..+|.++.+.+.+ .+++....|-|.-|....      .+....++         -......++.|+|+|..+.+-+
T Consensus       141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~  220 (558)
T KOG0882|consen  141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN  220 (558)
T ss_pred             ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence            4578999999999999 899999999999998762      11111111         1345678999999999999999


Q ss_pred             CCCeEEEEECCCCeeeeee-------------e--eeeccCCCC--------C-CCCCeEEEEEcCCCCEEEEEecCeEE
Q 005342          606 ADAQLCVWDAVGWKKLCSK-------------F--LHSFQTGLV--------P-ETTIVNHIQFHPDQIHLLSIHEGQID  661 (701)
Q Consensus       606 ~D~~I~vwd~~~g~~~~~~-------------~--l~~~~~~~~--------~-~~~~v~~v~~spdg~~l~sg~Dg~I~  661 (701)
                      .|.+|++++.++|+.....             +  +..+.-+..        . ....-+.+.|...|++|+.|.-=.|+
T Consensus       221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gik  300 (558)
T KOG0882|consen  221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIK  300 (558)
T ss_pred             cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEE
Confidence            9999999999998643310             0  000000000        0 01234567899999999988766799


Q ss_pred             EEECCCCceeeeeee
Q 005342          662 VYEAPTLNHTSQVLL  676 (701)
Q Consensus       662 iwd~~~g~~~~~l~~  676 (701)
                      +.++.++++++.+-.
T Consensus       301 vin~~tn~v~ri~gk  315 (558)
T KOG0882|consen  301 VINLDTNTVVRILGK  315 (558)
T ss_pred             EEEeecCeEEEEecc
Confidence            999999998877643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.46  E-value=7.5e-05  Score=85.00  Aligned_cols=223  Identities=13%  Similarity=0.116  Sum_probs=134.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC-
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN-  473 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~-  473 (701)
                      |.++.|.-++..++.+..+|.|.+-|..    +.....+.    .-.+.|.+++||||+..++..+.++++.+-+-.-. 
T Consensus        71 i~s~~fl~d~~~i~v~~~~G~iilvd~e----t~~~eivg----~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~  142 (1265)
T KOG1920|consen   71 IVSVQFLADTNSICVITALGDIILVDPE----TLELEIVG----NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP  142 (1265)
T ss_pred             eEEEEEecccceEEEEecCCcEEEEccc----ccceeeee----eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence            8899999999999999999999999886    33322211    13678999999999999999999888877543111 


Q ss_pred             ---Cc------ccccccc-cee--eEEeeCCCCeEEeec------ccC--CCCCCeEEEEec--CCEEEEE-----eC-C
Q 005342          474 ---KQ------SLEEENV-NME--SQLYQPSSKLVMTND------IAA--DPKDSISCFALR--GSHLFSA-----SG-G  525 (701)
Q Consensus       474 ---~~------~~g~~~~-~~~--i~~~d~~~~~~~~~~------~~~--~~~~~v~~l~~s--~~~l~s~-----sd-g  525 (701)
                         ..      ..++.+. .+.  -.-+....|+.....      ...  .-.+.=++++|-  |+++++.     .+ .
T Consensus       143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R  222 (1265)
T KOG1920|consen  143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR  222 (1265)
T ss_pred             hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence               11      0011100 000  000111111100000      000  011122357787  8888873     34 7


Q ss_pred             eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCce----EEeecCCCCCeEEEEEecC
Q 005342          526 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLS  597 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs---~dg~I~iwd~~~~~~----~~~l~~h~~~V~~v~~spd  597 (701)
                      .|++||.+ |..-..-......-.+++|-|.| .+++-.   .|+.|.+|.. +|-.    .-.+.-....|..++|+.+
T Consensus       223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCC
Confidence            99999986 54333222223344789999999 877653   4457888874 4432    2223323445999999999


Q ss_pred             CCEEEE---EeCCCeEEEEECCCCeeeeeeeee
Q 005342          598 LNVLVS---SGADAQLCVWDAVGWKKLCSKFLH  627 (701)
Q Consensus       598 g~~l~s---~s~D~~I~vwd~~~g~~~~~~~l~  627 (701)
                      +..||.   ......|++|-+.+..-.....+.
T Consensus       301 sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~  333 (1265)
T KOG1920|consen  301 SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ  333 (1265)
T ss_pred             CCceeeeecccccceEEEEEecCeEEEEEEEEe
Confidence            998887   555556999999986543333333

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.46  E-value=0.00024  Score=68.98  Aligned_cols=239  Identities=14%  Similarity=0.150  Sum_probs=127.3

Q ss_pred             EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342          397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  476 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  476 (701)
                      .++.++||+.||.-.+ ..|.|-...+.-.+- ..+...+.. ....=..++||||+..||.+...|+|+++|+.+... 
T Consensus         2 ~~~~~~~Gk~lAi~qd-~~iEiRsa~Ddf~si-~~kcqVpkD-~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-   77 (282)
T PF15492_consen    2 HLALSSDGKLLAILQD-QCIEIRSAKDDFSSI-IGKCQVPKD-PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-   77 (282)
T ss_pred             ceeecCCCcEEEEEec-cEEEEEeccCCchhe-eEEEecCCC-CCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-
Confidence            4677889998887654 556555543211111 112122322 334456799999999999999999999999855432 


Q ss_pred             ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---------CCEEEEEeCCeEEEEeCC-----CCcEEEEec
Q 005342          477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---------GSHLFSASGGKISIFSLE-----TFQTLATFA  542 (701)
Q Consensus       477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---------~~~l~s~sdg~I~iwd~~-----~~~~~~~~~  542 (701)
                                  +......-    ....-..+|..+.|-         -+.++..-+|.++-|-+.     ..+..+.+.
T Consensus        78 ------------f~I~p~~~----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs  141 (282)
T PF15492_consen   78 ------------FVIPPAMS----FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS  141 (282)
T ss_pred             ------------EEcCcccc----cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE
Confidence                        11110000    001122344444443         234444447777666542     223444443


Q ss_pred             ---CCCCCeEEEEEcCCC-eEEE-EeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCE--EEEEeCCCe------
Q 005342          543 ---NPPPIATYFILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV--LVSSGADAQ------  609 (701)
Q Consensus       543 ---~~~~~i~~l~~spdg-~l~~-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~--l~s~s~D~~------  609 (701)
                         .....|.++.++|.. ++++ |+....       ++.  .  ++-...+++=..-.+..+  .++..+|+.      
T Consensus       142 f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~-------~~~--s--~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~  210 (282)
T PF15492_consen  142 FSSHYPHGINSAVYHPKHRLLLVGGCEQNQ-------DGM--S--KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKR  210 (282)
T ss_pred             ecccCCCceeEEEEcCCCCEEEEeccCCCC-------Ccc--c--cccccCceEEEEcCCCCcEEEccccCccccccccc
Confidence               236789999999998 4444 444331       110  0  011112222111111111  122222221      


Q ss_pred             EEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342          610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       610 I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      -.+|.+-+.+     ... .....   ...|..+..||||..||+- .+|.|.+|++.+.++.+.+.
T Consensus       211 ~~~~~~~~~~-----~fs-~~~~~---~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  211 RGLLRIPSFK-----FFS-RQGQE---QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             cceeecccee-----eee-ccccC---CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            2333333311     111 11111   2789999999999999995 79999999999887766654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.45  E-value=0.00022  Score=70.97  Aligned_cols=217  Identities=16%  Similarity=0.075  Sum_probs=128.6

Q ss_pred             CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEecc
Q 005342          343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQ  422 (701)
Q Consensus       343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~  422 (701)
                      +++|..||..+|+.+-..        .+..                  +.....+ ...+++..+++++.++.+..||..
T Consensus         2 ~g~l~~~d~~tG~~~W~~--------~~~~------------------~~~~~~~-~~~~~~~~v~~~~~~~~l~~~d~~   54 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSY--------DLGP------------------GIGGPVA-TAVPDGGRVYVASGDGNLYALDAK   54 (238)
T ss_dssp             TSEEEEEETTTTEEEEEE--------ECSS------------------SCSSEEE-TEEEETTEEEEEETTSEEEEEETT
T ss_pred             CCEEEEEECCCCCEEEEE--------ECCC------------------CCCCccc-eEEEeCCEEEEEcCCCEEEEEECC
Confidence            688999999999887661        1100                  0011111 133466777777889999999987


Q ss_pred             ccCCCCc-eeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee-c
Q 005342          423 LINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-D  500 (701)
Q Consensus       423 ~~~~~~~-~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~  500 (701)
                          +|+ .+....+...  ...   . ..++..+++++.++.+..+|.                     .+|+..-. .
T Consensus        55 ----tG~~~W~~~~~~~~--~~~---~-~~~~~~v~v~~~~~~l~~~d~---------------------~tG~~~W~~~  103 (238)
T PF13360_consen   55 ----TGKVLWRFDLPGPI--SGA---P-VVDGGRVYVGTSDGSLYALDA---------------------KTGKVLWSIY  103 (238)
T ss_dssp             ----TSEEEEEEECSSCG--GSG---E-EEETTEEEEEETTSEEEEEET---------------------TTSCEEEEEE
T ss_pred             ----CCCEEEEeeccccc--cce---e-eecccccccccceeeeEeccc---------------------CCcceeeeec
Confidence                554 3443331111  111   1 334556777778888887754                     44543322 0


Q ss_pred             ccC--CCC-CCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe----------EEEEEcCCCeEEEEeCCC
Q 005342          501 IAA--DPK-DSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA----------TYFILLPQDLFAFGFDDS  566 (701)
Q Consensus       501 ~~~--~~~-~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i----------~~l~~spdg~l~~gs~dg  566 (701)
                      ...  ... .......+.++.++.+. ++.|..+|.++|+.+..+.......          ..-....++.+..++.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g  183 (238)
T PF13360_consen  104 LTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG  183 (238)
T ss_dssp             E-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred             cccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence            100  011 11222333377788887 8999999999999988886543221          122222233666777777


Q ss_pred             cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          567 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       567 ~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      .+.-+|+.+++.+-...  ...+.. ...+++..|+.++.++.|..||+++|+.
T Consensus       184 ~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  184 RVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             SEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             eEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            64444999998654322  222322 1356778888888999999999999964

...

>smart00668 CTLH C-terminal to LisH motif

Probab=98.43  E-value=1.9e-07  Score=70.20  Aligned_cols=54  Identities=30%  Similarity=0.529  Sum_probs=44.6

Q ss_pred             hHHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChh
Q 005342           45 NVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERT   99 (701)
Q Consensus        45 ~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~   99 (701)
                      ++..++++|+.|+|++|++.++..........+. +.|.|++|+|+||++.++..
T Consensus         4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~~   57 (58)
T smart00668        4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKLE   57 (58)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCcC
Confidence            4789999999999999999999885444334433 99999999999999988653

Alpha-helical motif of unknown function.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.43  E-value=0.00046  Score=69.10  Aligned_cols=213  Identities=14%  Similarity=0.083  Sum_probs=133.3

Q ss_pred             EEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEe-cCCCEEEEEECCCcEEEEecCCCC
Q 005342          397 ESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS-HSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       397 ~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~s-pdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      ++.|.+ ++.++++.-..+.|..|+..    ++....+..      .....+++. ++|. ++.+...+ +.++|.    
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~----~~~~~~~~~------~~~~G~~~~~~~g~-l~v~~~~~-~~~~d~----   67 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPD----TGEVEVIDL------PGPNGMAFDRPDGR-LYVADSGG-IAVVDP----   67 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETT----TTEEEEEES------SSEEEEEEECTTSE-EEEEETTC-EEEEET----
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECC----CCeEEEEec------CCCceEEEEccCCE-EEEEEcCc-eEEEec----
Confidence            578998 77778887788999999987    554443332      227778888 6654 55555544 444454    


Q ss_pred             ccccccccceeeEEeeCCCCeEEe--ecccCC-CCCCeEEEEec--CCEEEEEe-C--------CeEEEEeCCCCcEEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMT--NDIAAD-PKDSISCFALR--GSHLFSAS-G--------GKISIFSLETFQTLAT  540 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~--~~~~~~-~~~~v~~l~~s--~~~l~s~s-d--------g~I~iwd~~~~~~~~~  540 (701)
                                       .+++...  ...... .....++++++  |++.++.. .        |.|..++.. ++....
T Consensus        68 -----------------~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~  129 (246)
T PF08450_consen   68 -----------------DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV  129 (246)
T ss_dssp             -----------------TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred             -----------------CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence                             4443211  101011 34567788998  66555543 2        457888876 554433


Q ss_pred             ecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342          541 FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC  611 (701)
Q Consensus       541 ~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~-------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~  611 (701)
                      .. .-...+.++|+|++  ++++-+..+.|+.+++....       ....+....+..-.+++.++|++.++.-..+.|.
T Consensus       130 ~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~  208 (246)
T PF08450_consen  130 AD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV  208 (246)
T ss_dssp             EE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred             ec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence            33 34456899999999  45577788899999986322       1222232223478899999999888888899999


Q ss_pred             EEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEE-cCCCCEEEE
Q 005342          612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLS  654 (701)
Q Consensus       612 vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~-spdg~~l~s  654 (701)
                      ++|.. |+..  ..+. ++   .   ..+++++| .|+.+.|+.
T Consensus       209 ~~~p~-G~~~--~~i~-~p---~---~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  209 VFDPD-GKLL--REIE-LP---V---PRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             EEETT-SCEE--EEEE--S---S---SSEEEEEEESTTSSEEEE
T ss_pred             EECCC-ccEE--EEEc-CC---C---CCEEEEEEECCCCCEEEE
Confidence            99988 6533  2233 22   1   56899999 477665554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=1.1e-06  Score=86.19  Aligned_cols=149  Identities=8%  Similarity=0.112  Sum_probs=110.2

Q ss_pred             EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeE
Q 005342          408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ  487 (701)
Q Consensus       408 ~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~  487 (701)
                      ++.+.+..|-+-++.    ++.-..  +   ...+.|.++.|...++.+..|+.+|.|.++|++...             
T Consensus       228 fs~G~sqqv~L~nve----tg~~qs--f---~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn-------------  285 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVE----TGHQQS--F---QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN-------------  285 (425)
T ss_pred             ecccccceeEEEEee----cccccc--c---ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecc-------------
Confidence            455666778888887    553222  1   146789999999999999999999999999986542             


Q ss_pred             EeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcE---EEEecCCCCCeEE--EEEcCCC-
Q 005342          488 LYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT---LATFANPPPIATY--FILLPQD-  557 (701)
Q Consensus       488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~---~~~~~~~~~~i~~--l~~spdg-  557 (701)
                         --++...+. +  -|.+.|+++..-   +.+|++.+ +|+|++||.+--++   +.++.||-..-.-  +-+.+.. 
T Consensus       286 ---qG~~~~a~r-l--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg  359 (425)
T KOG2695|consen  286 ---QGNGWCAQR-L--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG  359 (425)
T ss_pred             ---cCCCcceEE-E--EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc
Confidence               122233322 2  377888887654   77888777 99999999987666   8899998554333  3344555 


Q ss_pred             eEEEEeCCCcEEEEeCCCCceEEeecC
Q 005342          558 LFAFGFDDSSILVHCPCTKKTKAKLKG  584 (701)
Q Consensus       558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~  584 (701)
                      .|+++++|...+||.++.|.++.++..
T Consensus       360 ~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  360 SIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             eEEEccCeeEEEEEecccCceeeccCC
Confidence            889999999999999999999888764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.37  E-value=3.4e-07  Score=99.36  Aligned_cols=211  Identities=12%  Similarity=0.123  Sum_probs=145.4

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC--c
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA--T  464 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~  464 (701)
                      .++.|+. .++++|+-+.+.|+.|+..|.|+++++.    +|.-..   ..+.|...|+.+.-+.||..+++.+.-.  -
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~----sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS----SGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEcc----Cccccc---cccccccccccccccCCcceeeeeccccCch
Confidence            3778888 9999999999999999999999999998    554333   3457999999999999999877766532  4


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCC-CCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT  540 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~  540 (701)
                      ..+|+...                    .+..       .| -..-.++.|+  -..-+.|+ .....+||++|+..+.+
T Consensus      1169 saLW~~~s--------------------~~~~-------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1169 SALWDASS--------------------TGGP-------RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             HHHhcccc--------------------ccCc-------cccccccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence            56675421                    1111       11 1234466777  22223344 56789999999987776


Q ss_pred             ec-C---CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342          541 FA-N---PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       541 ~~-~---~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~  615 (701)
                      +- +   ....-.+..|+|+. +|+   .||  .+||++..+.++.|..-+..+ .-.|+|.|.-++..++     |||+
T Consensus      1222 ylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~ 1290 (1516)
T KOG1832|consen 1222 YLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDM 1290 (1516)
T ss_pred             hcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhh
Confidence            42 1   12233778899999 655   345  579999988888776544222 2379999998887775     9999


Q ss_pred             CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      ++-+     .++.++.      -.-..|.|+..|..++.
T Consensus      1291 RTF~-----lLh~VP~------Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1291 RTFK-----LLHSVPS------LDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             HHHH-----HHhcCcc------ccceEEEeccCccchhh
Confidence            9953     2332221      22357889888887665

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.36  E-value=3.5e-06  Score=79.71  Aligned_cols=147  Identities=7%  Similarity=0.029  Sum_probs=90.9

Q ss_pred             EcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-----CCcEEEEecCCCC
Q 005342          400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-----TATHKLWKWQSNK  474 (701)
Q Consensus       400 ~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-----dg~i~vwd~~~~~  474 (701)
                      .+-.++.+++++.||.+.+++.+.      ...+..........-.+..+...++.+.++..     -+..+.|++    
T Consensus        97 ~s~~~t~V~~~~~dg~~~v~s~~~------~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~----  166 (319)
T KOG4714|consen   97 CTMTDNRVCIGYADGSLAVFSTDK------DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTL----  166 (319)
T ss_pred             ccccCCceEecCCCceEEEEechH------HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecc----
Confidence            344567899999999999999862      11111000000111122233344555444332     133334433    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcE-EEEecCCCCCeE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT-LATFANPPPIAT  549 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~-~~~~~~~~~~i~  549 (701)
                                     ++.+.....    ......|++++-+   .+.+++|+ ||.+-+||.+.... ...+..|+.++.
T Consensus       167 ---------------~p~~t~~~~----~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~  227 (319)
T KOG4714|consen  167 ---------------DPIKTLIPS----KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW  227 (319)
T ss_pred             ---------------ccccccccc----ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh
Confidence                           222222211    1123347788777   55677777 89999999988753 345678999999


Q ss_pred             EEEEcCCC--eEEEEeCCCcEEEEeCCC
Q 005342          550 YFILLPQD--LFAFGFDDSSILVHCPCT  575 (701)
Q Consensus       550 ~l~~spdg--~l~~gs~dg~I~iwd~~~  575 (701)
                      .+-|+|..  .++++++||.+..||..+
T Consensus       228 eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  228 EVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             heeccCCCchheeEecCCCcEEEEcCCC
Confidence            99999988  999999999999999764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.36  E-value=8.5e-06  Score=78.86  Aligned_cols=227  Identities=11%  Similarity=0.139  Sum_probs=137.9

Q ss_pred             CCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----
Q 005342          440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----  515 (701)
Q Consensus       440 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----  515 (701)
                      ....|+++.|...|.|+++|...|.|.++.-+...-..-+....+.  -.+++-..+..  +  .-...|..+.|-    
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ--she~EFDYLkS--l--eieEKin~I~w~~~t~   98 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ--SHELEFDYLKS--L--EIEEKINAIEWFDDTG   98 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc--ccccchhhhhh--c--cHHHHhhheeeecCCC
Confidence            4577999999999999999999999999854221100000000000  00000000000  0  112456667776    


Q ss_pred             -CCEEEEEeCCeEEEEeCCCCcE--E----------------------------------------EEe-cCCCCCeEEE
Q 005342          516 -GSHLFSASGGKISIFSLETFQT--L----------------------------------------ATF-ANPPPIATYF  551 (701)
Q Consensus       516 -~~~l~s~sdg~I~iwd~~~~~~--~----------------------------------------~~~-~~~~~~i~~l  551 (701)
                       ..+|+++.|.+|++|-+.....  +                                        +.+ ..|...|.++
T Consensus        99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi  178 (460)
T COG5170          99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI  178 (460)
T ss_pred             cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence             4467777799999998753310  0                                        011 2455567888


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEeCCCCc---eEEeecCCC-----CCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCee-
Q 005342          552 ILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQ-----NRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKK-  620 (701)
Q Consensus       552 ~~spdg-~l~~gs~dg~I~iwd~~~~~---~~~~l~~h~-----~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~-  620 (701)
                      ++..|. .+++ ..|-.|-+|++.-..   .+-.++.|.     ..|++..|+|. .+.+...+..|.|++-|++.... 
T Consensus       179 S~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc  257 (460)
T COG5170         179 SFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC  257 (460)
T ss_pred             eecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence            888888 5554 567789999976421   223334443     36889999995 44666777889999999984211 


Q ss_pred             -----eeeeeeee----ccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC-Cceeeeeee
Q 005342          621 -----LCSKFLHS----FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT-LNHTSQVLL  676 (701)
Q Consensus       621 -----~~~~~l~~----~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~-g~~~~~l~~  676 (701)
                           .....+..    +..+-.   ..|..+.|+|+|+++++-+=.+++|||++. ..++++++-
T Consensus       258 dn~~klfe~~~D~v~~~ff~eiv---sSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         258 DNSKKLFELTIDGVDVDFFEEIV---SSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             cCchhhhhhccCcccchhHHHHh---hhhcceEEcCCCcEEEEeccceEEEEecccccCCceeech
Confidence                 00011110    001111   567889999999999987778999999975 457788754

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=3.4e-06  Score=85.55  Aligned_cols=215  Identities=16%  Similarity=0.205  Sum_probs=142.5

Q ss_pred             CCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC
Q 005342          440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  517 (701)
Q Consensus       440 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~  517 (701)
                      |...|+.+..+ -.+++++++.||.++.|.-                   ...+|.-..+.+ ..|...|.+++.+  |-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkK-------------------s~isGvEfVKhF-raHL~~I~sl~~S~dg~   66 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKK-------------------SRISGVEFVKHF-RAHLGVILSLAVSYDGW   66 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCC-------------------CCccceeehhhh-HHHHHHHHhhhccccce
Confidence            66777776554 4568999999999999943                   111232111112 2577788888888  55


Q ss_pred             EEEEEe--CCeEEEEeCCCCcEEEEecC--CCCCeEEEEEcCCC---eEEEE-eCCCcEEEEeCCCCc-eEEeecC-CCC
Q 005342          518 HLFSAS--GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD---LFAFG-FDDSSILVHCPCTKK-TKAKLKG-HQN  587 (701)
Q Consensus       518 ~l~s~s--dg~I~iwd~~~~~~~~~~~~--~~~~i~~l~~spdg---~l~~g-s~dg~I~iwd~~~~~-~~~~l~~-h~~  587 (701)
                      .+.+.+  |..++++|+++...+.-+..  .+..+. ...+|..   .|+++ ..+|.|.++|-.... ....+.+ |.+
T Consensus        67 L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s  145 (558)
T KOG0882|consen   67 LFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS  145 (558)
T ss_pred             eEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence            566644  79999999987655433321  223332 3333432   55544 456799999976543 3344444 999


Q ss_pred             CeEEEEEecCCCEEEEEeCCCeEEEEECCC------CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeE
Q 005342          588 RITCLAYSLSLNVLVSSGADAQLCVWDAVG------WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI  660 (701)
Q Consensus       588 ~V~~v~~spdg~~l~s~s~D~~I~vwd~~~------g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I  660 (701)
                      +|..+.++|-+..++|....|.|.-|....      ++........+..-+-........++.|+|+|..+.+ +.|..|
T Consensus       146 PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkV  225 (558)
T KOG0882|consen  146 PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKV  225 (558)
T ss_pred             ceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEE
Confidence            999999999999999999999999999874      1000000000000011112266789999999999998 699999


Q ss_pred             EEEECCCCceeeeeee
Q 005342          661 DVYEAPTLNHTSQVLL  676 (701)
Q Consensus       661 ~iwd~~~g~~~~~l~~  676 (701)
                      ++++..+|++++.+..
T Consensus       226 R~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  226 RGFVFKTGKLVQEIDE  241 (558)
T ss_pred             EEEEeccchhhhhhhc
Confidence            9999999999887765

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=5.9e-06  Score=89.76  Aligned_cols=151  Identities=16%  Similarity=0.224  Sum_probs=113.6

Q ss_pred             CCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec
Q 005342          506 KDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK  583 (701)
Q Consensus       506 ~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~  583 (701)
                      ...++|.++++++++.|+ +|.|++++... .. .+...|...      .-+| ++++|+.||+|.|-.+-+.+...++.
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d  110 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD  110 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence            356777778899999999 99999999853 33 332224333      5678 99999999999999998888877766


Q ss_pred             CCCCCeEEEEEecC-----CCEEEEEeCCCeEEEEECCC-CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEec
Q 005342          584 GHQNRITCLAYSLS-----LNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE  657 (701)
Q Consensus       584 ~h~~~V~~v~~spd-----g~~l~s~s~D~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~D  657 (701)
                       -..++.+++++||     .+.+++||.-| +.++...- |.+   ..+. +..+.    ++|.++.|.  |.++|-.+|
T Consensus       111 -f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk---~~v~-l~~~e----G~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  111 -FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK---DSVV-LSEGE----GPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             -cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc---ccee-eecCc----cceEEEEec--CcEEEEecC
Confidence             3468999999998     46889999988 77776543 111   1111 11222    899999997  788888888


Q ss_pred             CeEEEEECCCCceeeeeee
Q 005342          658 GQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       658 g~I~iwd~~~g~~~~~l~~  676 (701)
                      -.|+|||+.+++.+..++.
T Consensus       179 ~Gv~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  179 DGVKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             CCcEEEeccccceeeccCC
Confidence            8899999999998887776

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.29  E-value=6.2e-07  Score=97.45  Aligned_cols=193  Identities=13%  Similarity=0.137  Sum_probs=137.4

Q ss_pred             CCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--
Q 005342          438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  515 (701)
Q Consensus       438 ~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--  515 (701)
                      ..+....+|++|+.+.++|+.|+..|.|+++++                     .+|..... . ..|..+|+.+.-+  
T Consensus      1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv---------------------~sG~~e~s-~-ncH~SavT~vePs~d 1154 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNV---------------------SSGSMEES-V-NCHQSAVTLVEPSVD 1154 (1516)
T ss_pred             hccccceeeEEeecCCceEEeeeccceEEEEEc---------------------cCcccccc-c-cccccccccccccCC
Confidence            356788999999999999999999999999976                     34432211 1 4789999999888  


Q ss_pred             CCEEEEEe--C-CeEEEEeCCC-CcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe-ecC---CC
Q 005342          516 GSHLFSAS--G-GKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKG---HQ  586 (701)
Q Consensus       516 ~~~l~s~s--d-g~I~iwd~~~-~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~-l~~---h~  586 (701)
                      |..+++.+  . .-..+|++.. +...++|.+    -.++.|+... +-+.|+......+||+.++....+ +.+   ..
T Consensus      1155 gs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1155 GSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred             cceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence            77766655  3 3678999854 556666652    3578888777 667777778899999999987766 332   12


Q ss_pred             CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342          587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP  666 (701)
Q Consensus       587 ~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~  666 (701)
                      -.-+...|||+..++.   .||  .+||++..+.     ++.+..-     ..-..-.|+|.|.-++..+    .|||++
T Consensus      1231 y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a-----Ih~FD~f-----t~~~~G~FHP~g~eVIINS----EIwD~R 1291 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL---NDG--VLWDVRIPEA-----IHRFDQF-----TDYGGGGFHPSGNEVIINS----EIWDMR 1291 (1516)
T ss_pred             hhccccccCCCcceEe---eCc--eeeeeccHHH-----Hhhhhhh-----eecccccccCCCceEEeec----hhhhhH
Confidence            2347789999988776   344  5899998432     2212111     1112335999999888743    489999


Q ss_pred             CCceeeeeee
Q 005342          667 TLNHTSQVLL  676 (701)
Q Consensus       667 ~g~~~~~l~~  676 (701)
                      |.+.+++.+.
T Consensus      1292 TF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1292 TFKLLHSVPS 1301 (1516)
T ss_pred             HHHHHhcCcc
Confidence            9999988886

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.28  E-value=0.00037  Score=74.24  Aligned_cols=128  Identities=15%  Similarity=0.154  Sum_probs=87.9

Q ss_pred             eeEEeeCCCCe--EEeecccCCCCCCeEEEEec---CCEEEEE----e-CCe----EEEEeCCCCcE----EEEecCCCC
Q 005342          485 ESQLYQPSSKL--VMTNDIAADPKDSISCFALR---GSHLFSA----S-GGK----ISIFSLETFQT----LATFANPPP  546 (701)
Q Consensus       485 ~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s---~~~l~s~----s-dg~----I~iwd~~~~~~----~~~~~~~~~  546 (701)
                      ++.++....++  ++.. +.  .+....++.||   +..+.+.    + +|.    -.+|+...++.    +.++ ..+.
T Consensus       185 Nl~L~~~~~~klEvL~y-ir--TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s  260 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSY-IR--TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPS  260 (545)
T ss_pred             cEEEEEecCCcEEEEEE-EE--ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCC
Confidence            45566655554  2221 11  23344677787   4555443    2 332    35677655432    2233 3677


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      .+.+++++|+. .++.|+.||.|.+||...+....  ..+.-.++.++|+|+|.++++|++.|.+.+||+.-.
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            89999999999 99999999999999987663332  224456789999999999999999999999998754

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=6.2e-05  Score=82.08  Aligned_cols=142  Identities=13%  Similarity=0.141  Sum_probs=101.9

Q ss_pred             CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC-----CCEEEEEECCCcEEEEecCCCCcc
Q 005342          402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-----GDFLVALTQTATHKLWKWQSNKQS  476 (701)
Q Consensus       402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd-----g~~l~s~s~dg~i~vwd~~~~~~~  476 (701)
                      .+|.+++||+.||+|.|-.+.+   +..+....+     ..++.+++++||     .+.+++||..| +.++.-.     
T Consensus        81 ~~Gey~asCS~DGkv~I~sl~~---~~~~~~~df-----~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~-----  146 (846)
T KOG2066|consen   81 LEGEYVASCSDDGKVVIGSLFT---DDEITQYDF-----KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN-----  146 (846)
T ss_pred             cCCceEEEecCCCcEEEeeccC---CccceeEec-----CCcceeEEeccchhhhhhhheeecCcce-EEEehhh-----
Confidence            3699999999999999998873   333344333     578999999998     56789999988 7776320     


Q ss_pred             ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCe------EE
Q 005342          477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIA------TY  550 (701)
Q Consensus       477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i------~~  550 (701)
                                  |=-.....+   + ....++|.++.|.|+++|-++|-.|++||+.+++.+..++.....+      ..
T Consensus       147 ------------wlgnk~~v~---l-~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpph  210 (846)
T KOG2066|consen  147 ------------WLGNKDSVV---L-SEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPH  210 (846)
T ss_pred             ------------hhcCcccee---e-ecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCc
Confidence                        100111111   1 2457899999999999999998779999999998887776443332      56


Q ss_pred             EEEcCCCeEEEEeCCCcEEEEeCC
Q 005342          551 FILLPQDLFAFGFDDSSILVHCPC  574 (701)
Q Consensus       551 l~~spdg~l~~gs~dg~I~iwd~~  574 (701)
                      +.|.++..++.|..| +|+|..++
T Consensus       211 l~W~~~~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  211 LHWQDEDRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             eEecCCCeEEEecCC-eEEEEEEe
Confidence            778777767777655 67777766

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.23  E-value=0.00066  Score=68.77  Aligned_cols=244  Identities=13%  Similarity=0.105  Sum_probs=136.9

Q ss_pred             EEEEcCCCCeEEEEc----------CCCcEEEEeccccCCCCceeEeecCCC-C--CCCCEEEEEEecCCCEEEEEECCC
Q 005342          397 ESTSLPDADSAVCAK----------SLEKSVNLKLQLINEPSECRTLLLPDN-S--FGGRVVRLIYSHSGDFLVALTQTA  463 (701)
Q Consensus       397 ~l~~spdg~~l~s~s----------~d~~v~iw~~~~~~~~~~~~~l~~~~~-~--~~~~v~~l~~spdg~~l~s~s~dg  463 (701)
                      .+..+|||+.+++++          ...-|.+||..+....+   .+.+|.. .  ........++|.||++++      
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~---EI~iP~k~R~~~~~~~~~~~ls~dgk~~~------  110 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG---EIEIPPKPRAQVVPYKNMFALSADGKFLY------  110 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE---EEEETTS-B--BS--GGGEEE-TTSSEEE------
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc---eEecCCcchheecccccceEEccCCcEEE------
Confidence            467899999988753          34568899998533222   2333332 0  011122345666666644      


Q ss_pred             cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEE-eCCeEEEEeCC-CCcEEEE
Q 005342          464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-SGGKISIFSLE-TFQTLAT  540 (701)
Q Consensus       464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~-sdg~I~iwd~~-~~~~~~~  540 (701)
                         +||+.          .+-++.+.|...++++.. +.   ...+..+--+ +..+.+- +||.+.-..+. .|+..++
T Consensus       111 ---V~N~T----------Pa~SVtVVDl~~~kvv~e-i~---~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~  173 (342)
T PF06433_consen  111 ---VQNFT----------PATSVTVVDLAAKKVVGE-ID---TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK  173 (342)
T ss_dssp             ---EEEES----------SSEEEEEEETTTTEEEEE-EE---GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred             ---EEccC----------CCCeEEEEECCCCceeee-ec---CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence               44441          122345557787776642 21   1223233233 3444444 49999888876 4554332


Q ss_pred             ----ecCCCCCe-EEEEEcCCC-eEEEEeCCCcEEEEeCCCCce--EEeecC----------CCCCeEEEEEecCCCEEE
Q 005342          541 ----FANPPPIA-TYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKG----------HQNRITCLAYSLSLNVLV  602 (701)
Q Consensus       541 ----~~~~~~~i-~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~--~~~l~~----------h~~~V~~v~~spdg~~l~  602 (701)
                          |.....++ ..-+++..+ .++.-+.+|.|+-.|+.....  ...+.-          -.+.-.-+++++..+.|+
T Consensus       174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly  253 (342)
T PF06433_consen  174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY  253 (342)
T ss_dssp             EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred             eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence                22222332 344555555 566678999999988876542  122211          112345578888665554


Q ss_pred             EEe---CCC-------eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEE-E-ecCeEEEEECCCCc
Q 005342          603 SSG---ADA-------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-I-HEGQIDVYEAPTLN  669 (701)
Q Consensus       603 s~s---~D~-------~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~s-g-~Dg~I~iwd~~~g~  669 (701)
                      .--   .++       .|-++|+++++.+....+.          .++.+|+.+.|.+ +|++ . .++.+.+||..+|+
T Consensus       254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            421   122       5888899998876655555          6678999998864 5654 4 58899999999999


Q ss_pred             eeeeeee
Q 005342          670 HTSQVLL  676 (701)
Q Consensus       670 ~~~~l~~  676 (701)
                      .+++++.
T Consensus       324 ~~~~~~~  330 (342)
T PF06433_consen  324 LVRSIEQ  330 (342)
T ss_dssp             EEEEE--
T ss_pred             EEeehhc
Confidence            9999887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.22  E-value=0.0019  Score=64.68  Aligned_cols=224  Identities=13%  Similarity=0.075  Sum_probs=131.2

Q ss_pred             EEEEcC-CCCeEEEEcCCCc-EEEEeccccCCCCceeEee-cCCCCCCCCEEEEEEecCCCEEEEEECC-----CcEEEE
Q 005342          397 ESTSLP-DADSAVCAKSLEK-SVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQT-----ATHKLW  468 (701)
Q Consensus       397 ~l~~sp-dg~~l~s~s~d~~-v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~d-----g~i~vw  468 (701)
                      .++.+| .+..++.+-.-|+ ..+||..    +++..... .+..  ..---.-.||+||++|++.-.|     |.|-||
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~----~g~~~~~~~a~~g--RHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCR----TGQLLQRLWAPPG--RHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcC----CCceeeEEcCCCC--CEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            577888 5566667766665 5678887    55444322 1111  1112235799999999887553     889999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-------------------CCeE
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-------------------GGKI  527 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-------------------dg~I  527 (701)
                      |....-.                    .+ .++. .+.-....+.+.  |+.|+++.                   +..+
T Consensus        83 d~~~~~~--------------------ri-~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL  140 (305)
T PF07433_consen   83 DAARGYR--------------------RI-GEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL  140 (305)
T ss_pred             ECcCCcE--------------------EE-eEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence            7742111                    11 1111 122222233344  43444432                   2346


Q ss_pred             EEEeCCCCcEEEEec----CCCCCeEEEEEcCCC-eEEEEeCCC-------cEEEEeCCCCceEEeec-------CCCCC
Q 005342          528 SIFSLETFQTLATFA----NPPPIATYFILLPQD-LFAFGFDDS-------SILVHCPCTKKTKAKLK-------GHQNR  588 (701)
Q Consensus       528 ~iwd~~~~~~~~~~~----~~~~~i~~l~~spdg-~l~~gs~dg-------~I~iwd~~~~~~~~~l~-------~h~~~  588 (701)
                      ...|..+|+.+....    -|...|..++++++| .++..-..|       -+.+++...  .+..+.       .-.+.
T Consensus       141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y  218 (305)
T PF07433_consen  141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGY  218 (305)
T ss_pred             EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCc
Confidence            677778888776633    256789999999999 433333333       244554322  222222       23467


Q ss_pred             eEEEEEecCCCEEE-EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEE
Q 005342          589 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV  662 (701)
Q Consensus       589 V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~i  662 (701)
                      +-+|++++++.+++ |+=.-+.+.+||..+|+.+....+           ..+..++-.+++ +++++..|.+..
T Consensus       219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-----------~D~cGva~~~~~-f~~ssG~G~~~~  281 (305)
T PF07433_consen  219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-----------PDACGVAPTDDG-FLVSSGQGQLIR  281 (305)
T ss_pred             eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-----------CceeeeeecCCc-eEEeCCCccEEE
Confidence            89999999998775 555678999999999874432222           345677777776 677765565433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.18  E-value=5.5e-06  Score=56.34  Aligned_cols=38  Identities=21%  Similarity=0.210  Sum_probs=35.8

Q ss_pred             CcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 005342          535 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC  572 (701)
Q Consensus       535 ~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd  572 (701)
                      ++++.++.+|...|++++|+|++ ++++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788999999999999999999 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.18  E-value=7.8e-05  Score=81.30  Aligned_cols=69  Identities=19%  Similarity=0.286  Sum_probs=58.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  470 (701)
                      +.+++|+|..-.|+.|-.-|.+.+|..+    +.+...+.   ..|+.+|..+.|||+|..++++..-|.+.+|..
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~----~~e~htv~---~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~  130 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTN----TTETHTVV---ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY  130 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecC----Cceeeeec---cCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence            5679999999999999999999999987    44444422   248899999999999999999999999999966

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=0.00017  Score=72.61  Aligned_cols=240  Identities=12%  Similarity=0.055  Sum_probs=132.2

Q ss_pred             cccCCCc-eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCc
Q 005342          388 CFNDNNQ-SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTAT  464 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~  464 (701)
                      .+.+|.. |..++|||..+ ++..++.+..|+|.|++    +..+..   ....+ ..+++++|.-|.. +|.+|-.+|.
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle----t~~~vs---sy~a~-~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE----TSCVVS---SYIAY-NQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecc----cceeee---heecc-CCceeeeeccCCcceeEEeccCce
Confidence            3557777 99999999888 68889999999999998    443332   22223 8899999998765 5566666999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEE-------Eec-CCEEEEEeCCeEEEEeCCC--
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF-------ALR-GSHLFSASGGKISIFSLET--  534 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l-------~~s-~~~l~s~sdg~I~iwd~~~--  534 (701)
                      |.+||++..+-+.....+.       .             ...+|..+       .|. |..++... -....|++.-  
T Consensus       260 VlvyD~R~~~~~~~e~~a~-------~-------------t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~  318 (463)
T KOG1645|consen  260 VLVYDMRQPEGPLMELVAN-------V-------------TINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSA  318 (463)
T ss_pred             EEEEEccCCCchHhhhhhh-------h-------------ccCcceeecccCccccccccceEEeee-hhhhhhhhhccc
Confidence            9999985543211111110       0             11122221       233 55554444 1244555432  


Q ss_pred             CcEEEEec-CCCCCeEEEEEcCCC--eEEEEeCCC---c---EE-EEeCCCCceEEeec-CCCC-------CeEEEEEec
Q 005342          535 FQTLATFA-NPPPIATYFILLPQD--LFAFGFDDS---S---IL-VHCPCTKKTKAKLK-GHQN-------RITCLAYSL  596 (701)
Q Consensus       535 ~~~~~~~~-~~~~~i~~l~~spdg--~l~~gs~dg---~---I~-iwd~~~~~~~~~l~-~h~~-------~V~~v~~sp  596 (701)
                      +......+ +..+...++...+..  .+++.-.+.   +   |- --|-.+|..+..-+ +|.+       .-..+.-.+
T Consensus       319 ~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~  398 (463)
T KOG1645|consen  319 ECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVE  398 (463)
T ss_pred             cCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccc
Confidence            12222121 124455566666654  444332221   0   10 11222333332111 1200       011122235


Q ss_pred             CCCEEE-EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC--CCEEEEEecCeEEEEECC
Q 005342          597 SLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAP  666 (701)
Q Consensus       597 dg~~l~-s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd--g~~l~sg~Dg~I~iwd~~  666 (701)
                      +.++++ ++++.+.+.+||..+++.....++.          .+|..+.....  +.+|++-.|..++||..+
T Consensus       399 ~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~----------epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  399 DNNYIVVVGDSTNELILQDPHSFEVVQTLALS----------EPVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             cccEEEEecCCcceeEEeccchhheeeecccC----------cceeecceeecCCcchhhheecceEEEEecC
Confidence            666655 4556778999999998755444443          66777665442  456776788889998764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.07  E-value=7.7e-05  Score=82.24  Aligned_cols=180  Identities=14%  Similarity=0.171  Sum_probs=128.6

Q ss_pred             CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccccccc
Q 005342          403 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV  482 (701)
Q Consensus       403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~  482 (701)
                      ++..++-|+-...+..+|+.    +.+..+..   .-..+.|.-+.  .+++++.+|...|+|.+-              
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~----~~~e~r~~---~v~a~~v~imR--~Nnr~lf~G~t~G~V~Lr--------------  202 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLN----TEKETRTT---NVSASGVTIMR--YNNRNLFCGDTRGTVFLR--------------  202 (1118)
T ss_pred             CCcceeecchhhheeeeecc----cceeeeee---eccCCceEEEE--ecCcEEEeecccceEEee--------------
Confidence            44567777777788888887    44333311   11233455444  468889999999999998              


Q ss_pred             ceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-C---------CeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342          483 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-G---------GKISIFSLETFQTLATFANPPPIATYFI  552 (701)
Q Consensus       483 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-d---------g~I~iwd~~~~~~~~~~~~~~~~i~~l~  552 (701)
                             |+.+.+.+.. + ..|.+.|.++...|+.|++++ .         ..|+|||++..+.+..+.-+.++ .-+.
T Consensus       203 -------D~~s~~~iht-~-~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr  272 (1118)
T KOG1275|consen  203 -------DPNSFETIHT-F-DAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR  272 (1118)
T ss_pred             -------cCCcCceeee-e-eccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence                   4455554433 3 478899998888888888876 3         35899999988877766544443 5678


Q ss_pred             EcCCC--eEEEEeCCCcEEEEeCCC---C-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342          553 LLPQD--LFAFGFDDSSILVHCPCT---K-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       553 ~spdg--~l~~gs~dg~I~iwd~~~---~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~  615 (701)
                      |+|.-  .+++.+..|...+-|..+   . .-+..+....+.+..+++|++|+.+|.|..+|.|.+|.-
T Consensus       273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            89987  899999999999998332   2 112222233456999999999999999999999999973

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.06  E-value=0.0011  Score=71.60  Aligned_cols=231  Identities=10%  Similarity=-0.002  Sum_probs=127.0

Q ss_pred             CCeEEEEcCCCcEEEEeccccCCCCc-eeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccccccc
Q 005342          404 ADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV  482 (701)
Q Consensus       404 g~~l~s~s~d~~v~iw~~~~~~~~~~-~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~  482 (701)
                      +..++.++.++.+.-+|..    +|+ .++...     ...+.+--.- .+..++.++.+|.+.-+|..+++        
T Consensus       120 ~~~v~v~~~~g~l~ald~~----tG~~~W~~~~-----~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~--------  181 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAE----DGEVAWQTKV-----AGEALSRPVV-SDGLVLVHTSNGMLQALNESDGA--------  181 (394)
T ss_pred             CCEEEEEcCCCEEEEEECC----CCCCcccccC-----CCceecCCEE-ECCEEEEECCCCEEEEEEccCCC--------
Confidence            4567777888999999987    443 343222     1122111111 13456677778888877653332        


Q ss_pred             ceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC-------CeEEEEEc
Q 005342          483 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP-------IATYFILL  554 (701)
Q Consensus       483 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~-------~i~~l~~s  554 (701)
                          .+|.......... . .+.    .+....+..++.++ +|.+..+|..+|+.+........       ....+..+
T Consensus       182 ----~~W~~~~~~~~~~-~-~~~----~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s  251 (394)
T PRK11138        182 ----VKWTVNLDVPSLT-L-RGE----SAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT  251 (394)
T ss_pred             ----EeeeecCCCCccc-c-cCC----CCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence                1222211100000 0 000    11122333455555 89999999999987766532110       01111122


Q ss_pred             C---CCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC
Q 005342          555 P---QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT  631 (701)
Q Consensus       555 p---dg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~  631 (701)
                      |   ++.+++++.+|.++.+|..+|+.+-+..-  +....+.  .++..++.++.+|.++.+|..+|+.+-....  .  
T Consensus       252 P~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~--  323 (394)
T PRK11138        252 PVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD--L--  323 (394)
T ss_pred             cEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc--c--
Confidence            2   33666777899999999999987654331  1112222  2456777788999999999999864321111  1  


Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee
Q 005342          632 GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       632 ~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      ..    ....+.... ++..++.+.||.+...|..+|+.+....
T Consensus       324 ~~----~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        324 LH----RLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             CC----CcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            11    111122221 4444444589999999999999877664

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.02  E-value=0.002  Score=61.49  Aligned_cols=124  Identities=15%  Similarity=0.059  Sum_probs=86.5

Q ss_pred             eCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC
Q 005342          490 QPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS  566 (701)
Q Consensus       490 d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg  566 (701)
                      |+.+|.+.-.   ..-..++.+-+.- |++++.|. .|.+++.+.++|...+.+.....--......+++ .|.+|+.|+
T Consensus        39 d~~sG~~~We---~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~  115 (354)
T KOG4649|consen   39 DPQSGNLIWE---AILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDG  115 (354)
T ss_pred             cCCCCcEEee---hhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCC
Confidence            6677776532   2235567776666 99999999 9999999999999888886443333455678888 999999999


Q ss_pred             cEEEEeCCCCceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCC
Q 005342          567 SILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       567 ~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +.+..|.++...+.+.+...+...+-+..| ++. |..+...|.+---..+.
T Consensus       116 ~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  116 NFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNP  166 (354)
T ss_pred             cEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEEEEccCC
Confidence            999999999988887764433334445666 444 33344445544444444

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.00  E-value=0.0013  Score=70.93  Aligned_cols=225  Identities=8%  Similarity=-0.030  Sum_probs=123.2

Q ss_pred             CCeEEEEcCCCcEEEEeccccCCCCc-eeEeecCCCC--C----CCCEE-EEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342          404 ADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNS--F----GGRVV-RLIYSHSGDFLVALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       404 g~~l~s~s~d~~v~iw~~~~~~~~~~-~~~l~~~~~~--~----~~~v~-~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  475 (701)
                      +..++.++.++.+.-+|..    +|+ .++..+....  .    ...+. .+.  -++..++.++.+|.+.-+|.     
T Consensus        69 ~~~vy~~~~~g~l~ald~~----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~v~v~~~~g~l~ald~-----  137 (394)
T PRK11138         69 YNKVYAADRAGLVKALDAD----TGKEIWSVDLSEKDGWFSKNKSALLSGGVT--VAGGKVYIGSEKGQVYALNA-----  137 (394)
T ss_pred             CCEEEEECCCCeEEEEECC----CCcEeeEEcCCCcccccccccccccccccE--EECCEEEEEcCCCEEEEEEC-----
Confidence            4466666667777777776    333 3332221100  0    00000 011  13456777788888887754     


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCCCCeEE-EEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe-----
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-----  548 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~-l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i-----  548 (701)
                                      ++|+.+-+   ......+.+ ..+.+..++.++ ++.+.-+|.++|+.+..+.......     
T Consensus       138 ----------------~tG~~~W~---~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  198 (394)
T PRK11138        138 ----------------EDGEVAWQ---TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE  198 (394)
T ss_pred             ----------------CCCCCccc---ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence                            44443211   111112211 222355666666 8999999999999988876331111     


Q ss_pred             EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCC--C-----CeEEEEEec--CCCEEEEEeCCCeEEEEECCCCe
Q 005342          549 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ--N-----RITCLAYSL--SLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       549 ~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~--~-----~V~~v~~sp--dg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      .+.... ++.++.++.+|.++.+|..+|+.+-......  +     ....+.-+|  .+..++.++.+|.++.+|..+|+
T Consensus       199 ~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~  277 (394)
T PRK11138        199 SAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ  277 (394)
T ss_pred             CCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence            111121 2356677889999999999988765433110  0     011112233  34567777889999999999997


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceee
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~  672 (701)
                      ..-...+.          . ...+..  ++..++. +.+|.+..+|..+|+.+-
T Consensus       278 ~~W~~~~~----------~-~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W  318 (394)
T PRK11138        278 IVWKREYG----------S-VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELW  318 (394)
T ss_pred             EEEeecCC----------C-ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence            44322211          1 111111  2334444 578888888888887654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.0021  Score=71.10  Aligned_cols=195  Identities=12%  Similarity=0.144  Sum_probs=120.3

Q ss_pred             EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCC-EEEEEEecCCCEEEEEECCC-----cEEEEecCC
Q 005342          399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGR-VVRLIYSHSGDFLVALTQTA-----THKLWKWQS  472 (701)
Q Consensus       399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~-v~~l~~spdg~~l~s~s~dg-----~i~vwd~~~  472 (701)
                      +|++.+..+|.|+.+|.|.+.+-.     -+...   .+..+... |..+....+..+|++.+.|+     .+++|+++.
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-----~~~~~---~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-----FQLIR---GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-----ceeee---hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence            488999999999999998887753     11101   22224444 44444444446788877764     488998854


Q ss_pred             CCccccccccceeeEEeeCCC-CeEE--eecc--c-CCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC---CCcEEEE
Q 005342          473 NKQSLEEENVNMESQLYQPSS-KLVM--TNDI--A-ADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQTLAT  540 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~-~~~~--~~~~--~-~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~---~~~~~~~  540 (701)
                      ...                .+ ..++  ...+  . +....++.+++++  -+.+|+|- +|.|..+.-.   .......
T Consensus       102 ~~~----------------n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~  165 (933)
T KOG2114|consen  102 VDK----------------NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD  165 (933)
T ss_pred             cCC----------------CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee
Confidence            321                11 1222  0001  0 1235688899999  56677777 8999888521   1111112


Q ss_pred             e-cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          541 F-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       541 ~-~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      + .....+|+.+++..++ .++....-..|.+|.+....+ ...+..|...++|..+++....+++++ +..+++|+...
T Consensus       166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~  244 (933)
T KOG2114|consen  166 YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG  244 (933)
T ss_pred             eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence            2 2346789999999999 423333445788888874442 445676777899999988555344333 34799999886


Q ss_pred             C
Q 005342          618 W  618 (701)
Q Consensus       618 g  618 (701)
                      .
T Consensus       245 ~  245 (933)
T KOG2114|consen  245 R  245 (933)
T ss_pred             c
Confidence            3

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.97  E-value=0.00012  Score=79.22  Aligned_cols=148  Identities=14%  Similarity=0.152  Sum_probs=115.1

Q ss_pred             CeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcC----------C-C--eEEEEeCCCcEEEEeC
Q 005342          508 SISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLP----------Q-D--LFAFGFDDSSILVHCP  573 (701)
Q Consensus       508 ~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp----------d-g--~l~~gs~dg~I~iwd~  573 (701)
                      .-.++.|+ +..++.|+...|.+.|..+.+.++.+..|+..|+.+.|.|          . .  .||++...|.|.+||.
T Consensus        17 N~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~   96 (1062)
T KOG1912|consen   17 NRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF   96 (1062)
T ss_pred             cccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence            35567888 8899999999999999999999999999999999999976          2 2  6888889999999999


Q ss_pred             CCCceEEeecCCCCCeEEEEEec---CC-CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC-C
Q 005342          574 CTKKTKAKLKGHQNRITCLAYSL---SL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-D  648 (701)
Q Consensus       574 ~~~~~~~~l~~h~~~V~~v~~sp---dg-~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp-d  648 (701)
                      ..+..+..+..|..++..++|-|   +. .+|+.-....++.+|+..+|++.-.     ...+|    ....++.+.| |
T Consensus        97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-----~~ys~----~iLs~f~~DPfd  167 (1062)
T KOG1912|consen   97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-----YDYSH----EILSCFRVDPFD  167 (1062)
T ss_pred             hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec-----cccCC----cceeeeeeCCCC
Confidence            99999999998999999999987   34 4677777788999999999975432     22233    4556677777 3


Q ss_pred             CCEEEE-EecCeEEEEE
Q 005342          649 QIHLLS-IHEGQIDVYE  664 (701)
Q Consensus       649 g~~l~s-g~Dg~I~iwd  664 (701)
                      .+++.. |..|.+-+-+
T Consensus       168 ~rh~~~l~s~g~vl~~~  184 (1062)
T KOG1912|consen  168 SRHFCVLGSKGFVLSCK  184 (1062)
T ss_pred             cceEEEEccCceEEEEe
Confidence            444444 4455444433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.00099  Score=67.32  Aligned_cols=73  Identities=21%  Similarity=0.128  Sum_probs=64.7

Q ss_pred             CCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC
Q 005342          503 ADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK  576 (701)
Q Consensus       503 ~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~  576 (701)
                      ..+...|.++++|   ...+..++ +..|.+.|+++...+..+..+ ..+++++|.-|.  +|.+|..+|.|++||++..
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            5678899999999   33677888 999999999999999988866 789999999998  9999999999999999853

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.96  E-value=0.0017  Score=69.89  Aligned_cols=213  Identities=15%  Similarity=0.163  Sum_probs=112.2

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe-cCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK-WQSN  473 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd-~~~~  473 (701)
                      ...+.++|+|++++.++. |.-.++...    ..+-..        .+.....+|.+.++ +++-..++.|.++. +   
T Consensus        35 p~~ls~npngr~v~V~g~-geY~iyt~~----~~r~k~--------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~---   97 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCGD-GEYEIYTAL----AWRNKA--------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNF---   97 (443)
T ss_dssp             -SEEEE-TTSSEEEEEET-TEEEEEETT----TTEEEE--------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETT---
T ss_pred             CeeEEECCCCCEEEEEcC-CEEEEEEcc----CCcccc--------cCceeEEEEecCcc-EEEEECCCeEEEEEcC---
Confidence            668999999999999555 777777643    111111        24455678988665 67777788899962 2   


Q ss_pred             CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEE
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFIL  553 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~  553 (701)
                                      +-.....+.      ....+..+- .|..|...+++.|.+||+++++.++.+...  +|..+.|
T Consensus        98 ----------------~~~~~k~i~------~~~~~~~If-~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~W  152 (443)
T PF04053_consen   98 ----------------KNEVVKSIK------LPFSVEKIF-GGNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIW  152 (443)
T ss_dssp             ----------------EE-TT-----------SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred             ----------------ccccceEEc------CCcccceEE-cCcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEE
Confidence                            111101111      011122221 177788888789999999999999999743  3899999


Q ss_pred             cCCC-eEEEEeCCCcEEEEeCCCC-----------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          554 LPQD-LFAFGFDDSSILVHCPCTK-----------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       554 spdg-~l~~gs~dg~I~iwd~~~~-----------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      +++| +++..+.+ .+++++....           .....+......|.+.+|..|  .++..+.. .++-  +..|+. 
T Consensus       153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-  225 (443)
T PF04053_consen  153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-  225 (443)
T ss_dssp             -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-
T ss_pred             ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-
Confidence            9999 88887755 6777664332           022323222457888899765  44444444 6665  455542 


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                        ..+..++       .++.=+...|..+.+... .|+.+..+.+
T Consensus       226 --~~i~~ld-------~~~yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  226 --GIIAHLD-------KPLYLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             --EEEEE-S-------S--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             --ceEEEcC-------CceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence              2333121       555666666655555554 5666666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.94  E-value=1.3e-05  Score=52.51  Aligned_cols=31  Identities=26%  Similarity=0.490  Sum_probs=29.6

Q ss_pred             hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCc
Q 005342           13 YTHLITLIMKFLEEENFKESLQALEQESKIF   43 (701)
Q Consensus        13 ~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~   43 (701)
                      ++++.++|+|||...||.+|+++|++|+|+.
T Consensus         3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        3 RSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            7899999999999999999999999999975

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.94  E-value=0.011  Score=56.73  Aligned_cols=225  Identities=14%  Similarity=0.059  Sum_probs=110.3

Q ss_pred             EEEcCCCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342          398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  476 (701)
Q Consensus       398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  476 (701)
                      ....+++..+..|+.|++.+.-|..    +..| ++.+.    ..+.-.+-+..|-...|.++...|.+.--+....   
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~----~~~cVykskc----gG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~---  167 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPK----TYGCVYKSKC----GGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY---  167 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEeccc----ccceEEeccc----CCceeccceecCCCceEEEEeccceEEEEccCCC---
Confidence            4567899999999999999999987    3333 22111    1122223334452223444455554443322110   


Q ss_pred             ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe-EEEEE
Q 005342          477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-TYFIL  553 (701)
Q Consensus       477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i-~~l~~  553 (701)
                                     ....+..    ..-.++|.+--.- +..+..+. ||.+.-+| ..|+.++.+. ..++| ..-+-
T Consensus       168 ---------------~~~~~w~----~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~  226 (354)
T KOG4649|consen  168 ---------------SSTEFWA----ATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPA-TKGPIFMEPCE  226 (354)
T ss_pred             ---------------Ccceehh----hhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeec-CCCceeccccc
Confidence                           0001110    0112233222111 55555566 88888888 5777777664 23333 11122


Q ss_pred             c-CCC-eEEEEeCCCcE--------EEEeCCCCceEEeecCCCCCeEEEEEe-cC---CCEEEEEeCCCeEEEEEC----
Q 005342          554 L-PQD-LFAFGFDDSSI--------LVHCPCTKKTKAKLKGHQNRITCLAYS-LS---LNVLVSSGADAQLCVWDA----  615 (701)
Q Consensus       554 s-pdg-~l~~gs~dg~I--------~iwd~~~~~~~~~l~~h~~~V~~v~~s-pd---g~~l~s~s~D~~I~vwd~----  615 (701)
                      + |.- .|..+.++..+        .+|..++|...+.+-.   +-...+++ |.   .++|..++.||++.|--.    
T Consensus       227 s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~---p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl  303 (354)
T KOG4649|consen  227 SRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLS---PKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSL  303 (354)
T ss_pred             CCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeC---cccceeccCCCCcchhhhhhhcCCCcEEEEEecccc
Confidence            2 333 44444444333        3455555533332211   10112222 21   346777889999988833    


Q ss_pred             -----CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC---CCCEEEEEecCeEEEEECCCC
Q 005342          616 -----VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSIHEGQIDVYEAPTL  668 (701)
Q Consensus       616 -----~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp---dg~~l~sg~Dg~I~iwd~~~g  668 (701)
                           ..|+......+. +.       +.   +--||   +|++++.+.|..++-||+.++
T Consensus       304 ~~~~s~~g~lq~~~~~e-l~-------~e---IFsSPvii~grl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  304 AEISSNGGELQNLEAIE-LS-------NE---IFSSPVIIDGRLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             cccccCCCccceEEEee-cC-------cc---cccCCeEEccEEEEEEccCeEEEEecccc
Confidence                 333322222221 11       11   11123   477666679999999999875

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.00088  Score=73.93  Aligned_cols=196  Identities=14%  Similarity=0.114  Sum_probs=124.6

Q ss_pred             EEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCC-eEEEEec-C-CEEEEEe-
Q 005342          448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFALR-G-SHLFSAS-  523 (701)
Q Consensus       448 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-v~~l~~s-~-~~l~s~s-  523 (701)
                      +|++.+..++.|+.+|.|.+.+-.                      -+... .+ ..+... |..+... + ++|++.+ 
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s----------------------~~~~~-~f-qa~~~siv~~L~~~~~~~~L~sv~E   85 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS----------------------FQLIR-GF-QAYEQSIVQFLYILNKQNFLFSVGE   85 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc----------------------ceeee-hh-eecchhhhhHhhcccCceEEEEEee
Confidence            367888899999999999888431                      11111 12 122223 4444333 3 4677666 


Q ss_pred             C-C----eEEEEeCCCC------cEE--EEecC-----CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC---C-CceEE
Q 005342          524 G-G----KISIFSLETF------QTL--ATFAN-----PPPIATYFILLPQD-LFAFGFDDSSILVHCPC---T-KKTKA  580 (701)
Q Consensus       524 d-g----~I~iwd~~~~------~~~--~~~~~-----~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~---~-~~~~~  580 (701)
                      | +    .+++||++..      .++  +.+.+     .+.++++++++.+- .+|+|..+|.|..+.-+   . +....
T Consensus        86 d~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~  165 (933)
T KOG2114|consen   86 DEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD  165 (933)
T ss_pred             cCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee
Confidence            4 3    6899998643      233  12222     25678999999998 99999999999988532   1 11111


Q ss_pred             eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeE
Q 005342          581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI  660 (701)
Q Consensus       581 ~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I  660 (701)
                      -......+|+.+++..+++.++-+..-..|.+|.+.. +..   .+. +...|.   .+++|.++++....++++.+.-+
T Consensus       166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p---~~~-~ld~~G---~~lnCss~~~~t~qfIca~~e~l  237 (933)
T KOG2114|consen  166 YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTP---SLK-VLDNNG---ISLNCSSFSDGTYQFICAGSEFL  237 (933)
T ss_pred             eeccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCc---cee-eeccCC---ccceeeecCCCCccEEEecCceE
Confidence            1112346999999999988644444456899999984 311   112 222443   78999999987776777777789


Q ss_pred             EEEECCCCceeeeee
Q 005342          661 DVYEAPTLNHTSQVL  675 (701)
Q Consensus       661 ~iwd~~~g~~~~~l~  675 (701)
                      .+|+....+.--+++
T Consensus       238 ~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  238 YFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEEcCCCcceeeeec
Confidence            999986544444444

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.90  E-value=0.00057  Score=74.64  Aligned_cols=99  Identities=14%  Similarity=0.052  Sum_probs=72.2

Q ss_pred             CCEEEEEeCCeEEEEeCCC-----CcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce----------
Q 005342          516 GSHLFSASGGKISIFSLET-----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT----------  578 (701)
Q Consensus       516 ~~~l~s~sdg~I~iwd~~~-----~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~----------  578 (701)
                      |++... .++.|.+.|..+     .+.+..+. -......+.++|||  .+++|..+.++.++|+.+.+.          
T Consensus       288 GK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~  365 (635)
T PRK02888        288 GKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD  365 (635)
T ss_pred             CCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence            554444 467899999988     34555554 45566899999999  566667789999999987542          


Q ss_pred             --EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          579 --KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       579 --~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                        +.+..-..++ ...+|.++|+...|-.-|..|..||+..
T Consensus       366 ~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        366 AVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence              3333322333 4568999999888888999999999886

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.86  E-value=0.00032  Score=77.58  Aligned_cols=149  Identities=13%  Similarity=0.123  Sum_probs=108.8

Q ss_pred             CeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCC---------CcEEEEeCCCCc
Q 005342          508 SISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD---------SSILVHCPCTKK  577 (701)
Q Consensus       508 ~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~d---------g~I~iwd~~~~~  577 (701)
                      .|.-+..+++++.+|. .|+|.+-|.++.+.++++..|.+.|..+....+ .+++++..         .-|.+||++..+
T Consensus       179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmr  257 (1118)
T KOG1275|consen  179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMR  257 (1118)
T ss_pred             ceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCC-eEEEeecccccccccccchhhhhhhhhhh
Confidence            3655655588888888 899999999999999999999999877655433 56655543         358999999887


Q ss_pred             eEEeecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCC-eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342          578 TKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI  655 (701)
Q Consensus       578 ~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g-~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg  655 (701)
                      .+..+.-+.++ .-+.|+|. ...++.+|..|...+-|..+. ++.. .... +  ..  ....+..+.+|++|..++.|
T Consensus       258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~-~~~~-v--~p--~~s~i~~fDiSsn~~alafg  330 (1118)
T KOG1275|consen  258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA-GVKM-V--NP--NGSGISAFDISSNGDALAFG  330 (1118)
T ss_pred             ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc-ceeE-E--cc--CCCcceeEEecCCCceEEEe
Confidence            77666656554 55688884 447788888899999884432 1100 1111 1  11  11569999999999999999


Q ss_pred             -ecCeEEEEE
Q 005342          656 -HEGQIDVYE  664 (701)
Q Consensus       656 -~Dg~I~iwd  664 (701)
                       .+|.|.+|-
T Consensus       331 d~~g~v~~wa  340 (1118)
T KOG1275|consen  331 DHEGHVNLWA  340 (1118)
T ss_pred             cccCcEeeec
Confidence             799999997

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.83  E-value=0.0012  Score=75.64  Aligned_cols=196  Identities=11%  Similarity=0.105  Sum_probs=123.8

Q ss_pred             CCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE
Q 005342          441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  518 (701)
Q Consensus       441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~  518 (701)
                      ...|.++.|..++..++.+..+|.|.+.|.                     ++....   +.+.-...|.+++||  ++.
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~---------------------et~~~e---ivg~vd~GI~aaswS~Dee~  123 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDP---------------------ETLELE---IVGNVDNGISAASWSPDEEL  123 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcc---------------------ccccee---eeeeccCceEEEeecCCCcE
Confidence            368999999999999999999999999854                     444322   112345678888888  667


Q ss_pred             EEEEe-CCeEEEEeCCCCcE------------------------EEEecCC---------------------CCCeEEEE
Q 005342          519 LFSAS-GGKISIFSLETFQT------------------------LATFANP---------------------PPIATYFI  552 (701)
Q Consensus       519 l~s~s-dg~I~iwd~~~~~~------------------------~~~~~~~---------------------~~~i~~l~  552 (701)
                      ++..+ ++++.+-+- +..+                        ...|.|.                     .+.=++|+
T Consensus       124 l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~Is  202 (1265)
T KOG1920|consen  124 LALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSIS  202 (1265)
T ss_pred             EEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEE
Confidence            66666 455544321 1111                        0112111                     11125699


Q ss_pred             EcCCC-eEEEE-----eCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE---eCCCeEEEEECCCCeeeee
Q 005342          553 LLPQD-LFAFG-----FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS---GADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       553 ~spdg-~l~~g-----s~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~---s~D~~I~vwd~~~g~~~~~  623 (701)
                      |-.|| ++|+.     .....|++||.+ |.+-..-....+--.+++|-|.|..+++-   +.|+.|.++....-+ ...
T Consensus       203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-hg~  280 (1265)
T KOG1920|consen  203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-HGE  280 (1265)
T ss_pred             EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc-ccc
Confidence            99999 88873     333689999965 54332222223334678999999999875   346689999866521 111


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEE---Ee-cCeEEEEECCCC
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---IH-EGQIDVYEAPTL  668 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s---g~-Dg~I~iwd~~~g  668 (701)
                      ..+. .+...    ..|..++|+.++..||+   .. ...|++|-+.+-
T Consensus       281 f~l~-~p~de----~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  281 FVLP-FPLDE----KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cccC-Ccccc----cchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            2222 22111    44999999999999997   33 444999987654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.81  E-value=0.0041  Score=63.12  Aligned_cols=262  Identities=14%  Similarity=0.087  Sum_probs=143.5

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-----------------CCCCeEEEEeccCCccccccccccCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----------------ANNETISLKDFPTVSNLRYASSILTDKPN  369 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~  369 (701)
                      +++.+.|.++++.+-.+...-.  .  .+..|||                 ...-.|.+||.++-.....+  .+..|  
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~--~--~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI--~iP~k--   88 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFL--G--NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI--EIPPK--   88 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESS--E--EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE--EETTS--
T ss_pred             ceEEEEECCCCcEEEEeecccC--C--ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE--ecCCc--
Confidence            5667788888888877764322  2  4456676                 33456889999887654432  11111  


Q ss_pred             CCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEE--cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEE
Q 005342          370 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL  447 (701)
Q Consensus       370 ~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~--s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l  447 (701)
                         +..           .+   -...+..+++.||+++...  +.-.+|.+-|+.    .++... .+    ....+..+
T Consensus        89 ---~R~-----------~~---~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~----~~kvv~-ei----~~PGC~~i  142 (342)
T PF06433_consen   89 ---PRA-----------QV---VPYKNMFALSADGKFLYVQNFTPATSVTVVDLA----AKKVVG-EI----DTPGCWLI  142 (342)
T ss_dssp             ----B-------------B---S--GGGEEE-TTSSEEEEEEESSSEEEEEEETT----TTEEEE-EE----EGTSEEEE
T ss_pred             ---chh-----------ee---cccccceEEccCCcEEEEEccCCCCeEEEEECC----CCceee-ee----cCCCEEEE
Confidence               000           00   0013346788999987765  445678888887    444322 11    11233333


Q ss_pred             EEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C
Q 005342          448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G  524 (701)
Q Consensus       448 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d  524 (701)
                      --+++ +.+.+.|.||.+....+...    |+.. ...-.+|++...            ..+..-+++  +..++..+ +
T Consensus       143 yP~~~-~~F~~lC~DGsl~~v~Ld~~----Gk~~-~~~t~~F~~~~d------------p~f~~~~~~~~~~~~~F~Sy~  204 (342)
T PF06433_consen  143 YPSGN-RGFSMLCGDGSLLTVTLDAD----GKEA-QKSTKVFDPDDD------------PLFEHPAYSRDGGRLYFVSYE  204 (342)
T ss_dssp             EEEET-TEEEEEETTSCEEEEEETST----SSEE-EEEEEESSTTTS-------------B-S--EEETTTTEEEEEBTT
T ss_pred             EecCC-CceEEEecCCceEEEEECCC----CCEe-EeeccccCCCCc------------ccccccceECCCCeEEEEecC
Confidence            22332 45889999999998877532    2211 111122332221            112222333  44444455 8


Q ss_pred             CeEEEEeCCCCcE--EEEecCC----------CCCeEEEEEcCCC-eEEEEeC---CC-------cEEEEeCCCCceEEe
Q 005342          525 GKISIFSLETFQT--LATFANP----------PPIATYFILLPQD-LFAFGFD---DS-------SILVHCPCTKKTKAK  581 (701)
Q Consensus       525 g~I~iwd~~~~~~--~~~~~~~----------~~~i~~l~~spdg-~l~~gs~---dg-------~I~iwd~~~~~~~~~  581 (701)
                      |.|+-.|+.....  ...+...          .+.-.-+++++.. .+.+-..   ++       .|.++|+.+++.+.+
T Consensus       205 G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~R  284 (342)
T PF06433_consen  205 GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVAR  284 (342)
T ss_dssp             SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEE
T ss_pred             CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEE
Confidence            8888888754432  1122100          1233557787655 3333221   22       699999999999998


Q ss_pred             ecCCCCCeEEEEEecCCC-EEEEE-eCCCeEEEEECCCCeee
Q 005342          582 LKGHQNRITCLAYSLSLN-VLVSS-GADAQLCVWDAVGWKKL  621 (701)
Q Consensus       582 l~~h~~~V~~v~~spdg~-~l~s~-s~D~~I~vwd~~~g~~~  621 (701)
                      +.. ..++.+++.+.|.+ +|++. ..++.+.+||..+|+.+
T Consensus       285 i~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  285 IPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             EEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             EeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            873 34588999999765 66654 45899999999999644

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.78  E-value=0.0032  Score=68.27  Aligned_cols=138  Identities=14%  Similarity=0.111  Sum_probs=97.0

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |.--++...+++++.|+.-|.+++++-.    ++..+.+  +..+..+.+..+..|++..++|+|+..|.|.++-++...
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~----~~~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRH----TGEMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecC----chhhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            7777888999999999999999999987    5654442  333445566677788888888888889999999764421


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc----EEEEecCCCCC
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPI  547 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~----~~~~~~~~~~~  547 (701)
                                      +.....++. ....|...|++++|+  +..+++|. .|+|..-.+.+..    ..+.+....+.
T Consensus       110 ----------------p~~~~~~t~-~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~  172 (726)
T KOG3621|consen  110 ----------------PRDLDYVTP-CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE  172 (726)
T ss_pred             ----------------CCcceeecc-ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence                            122222221 334578899999999  88899998 6999888776621    22333334566


Q ss_pred             eEEEEEcC
Q 005342          548 ATYFILLP  555 (701)
Q Consensus       548 i~~l~~sp  555 (701)
                      |-.+....
T Consensus       173 IVQlD~~q  180 (726)
T KOG3621|consen  173 IVQLDYLQ  180 (726)
T ss_pred             eEEeeccc
Confidence            66666543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.75  E-value=0.047  Score=55.57  Aligned_cols=239  Identities=13%  Similarity=0.101  Sum_probs=136.6

Q ss_pred             CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342          402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN  481 (701)
Q Consensus       402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~  481 (701)
                      ..++.|+.|..+| +.+++...   ......+.     +...|..+...|+-+.+++-+ |+.+.++++..-........
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~---~~~~~~i~-----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~   74 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSD---PSKPTRIL-----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP   74 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecC---CccceeEe-----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence            3578899998888 88888831   22222211     234499999999888777765 49999998754332110000


Q ss_pred             cceeeEEeeCCCCeEEeecccCCCCCCeEEEE---ec--CCEEEEEeCCeEEEEeCCCC-----cEEEEecCCCCCeEEE
Q 005342          482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFA---LR--GSHLFSASGGKISIFSLETF-----QTLATFANPPPIATYF  551 (701)
Q Consensus       482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~---~s--~~~l~s~sdg~I~iwd~~~~-----~~~~~~~~~~~~i~~l  551 (701)
                      ..       ...+......+  .....+..++   -.  +..++++....|.+|.....     +..+.+. ....+.++
T Consensus        75 ~~-------~~~~~~~~~~~--~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i  144 (275)
T PF00780_consen   75 LA-------FPKSRSLPTKL--PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSI  144 (275)
T ss_pred             cc-------ccccccccccc--cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEE
Confidence            00       00000000001  1233455555   11  44556555778888887542     4556665 45778899


Q ss_pred             EEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCC------------CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342          552 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH------------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       552 ~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h------------~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      +|.++ .++.|..+ ...+.|+.++.....+...            ..++..+.. +++.+|++-  |..-...|. .|+
T Consensus       145 ~~~~~-~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~  218 (275)
T PF00780_consen  145 AFLGN-KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGE  218 (275)
T ss_pred             EEeCC-EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCC
Confidence            99955 56666654 4788899877654433211            123333333 345666643  333333344 343


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      +.....+. +.       ....++++.  ..+|++-.++.|.||++.+|+++++++.
T Consensus       219 ~~r~~~i~-W~-------~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  219 PSRKSTIQ-WS-------SAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             cCcccEEE-cC-------CchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence            32222333 22       334566663  4688776667799999999999999886

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.75  E-value=0.0004  Score=74.47  Aligned_cols=158  Identities=19%  Similarity=0.116  Sum_probs=100.6

Q ss_pred             CCeEEEEec--CCEEEEEe----C-CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCC--cEEEEeCCC
Q 005342          507 DSISCFALR--GSHLFSAS----G-GKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS--SILVHCPCT  575 (701)
Q Consensus       507 ~~v~~l~~s--~~~l~s~s----d-g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg--~I~iwd~~~  575 (701)
                      ..+..-+|+  +..++..+    . ..+.++|+++++...... ....-...+|+|||  .+++...||  .|+++|+.+
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            345556666  55544433    2 369999999887555443 33344567899999  556666677  688889887


Q ss_pred             CceEEeecCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE
Q 005342          576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  652 (701)
Q Consensus       576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l  652 (701)
                      +...+ +..-.+.-..-.|+|||++++..++. |  .|.+.|...+..   ..+. ...+     . -....|||||+++
T Consensus       272 ~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT-~~~~-----~-~~~p~~SpdG~~i  340 (425)
T COG0823         272 KNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLT-FSGG-----G-NSNPVWSPDGDKI  340 (425)
T ss_pred             Cccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEee-ccCC-----C-CcCccCCCCCCEE
Confidence            76443 54333333356899999998877653 3  577777777642   1222 2212     1 2278899999999


Q ss_pred             EE-E-ecCe--EEEEECCCCceeeeeee
Q 005342          653 LS-I-HEGQ--IDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       653 ~s-g-~Dg~--I~iwd~~~g~~~~~l~~  676 (701)
                      +. + .+|.  |.+.|+.++...+.+..
T Consensus       341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt~  368 (425)
T COG0823         341 VFESSSGGQWDIDKNDLASGGKIRILTS  368 (425)
T ss_pred             EEEeccCCceeeEEeccCCCCcEEEccc
Confidence            87 4 3555  77777777665555544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.74  E-value=0.042  Score=59.70  Aligned_cols=240  Identities=13%  Similarity=0.032  Sum_probs=126.8

Q ss_pred             eEEEEEcCCCCeEEEE-cCC----CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC------
Q 005342          395 SRESTSLPDADSAVCA-KSL----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA------  463 (701)
Q Consensus       395 V~~l~~spdg~~l~s~-s~d----~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg------  463 (701)
                      +....+||||+++|.+ +..    ..+++.|+.    +++...-.+    .......+.|.+||+.|+....+.      
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~----tg~~l~d~i----~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE----TGKFLPDGI----ENPKFSSVSWSDDGKGFFYTRFDEDQRTSD  197 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETT----TTEEEEEEE----EEEESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECC----CCcCcCCcc----cccccceEEEeCCCCEEEEEEeCccccccc
Confidence            5578899999999865 222    458999998    564433111    111122399999999887776543      


Q ss_pred             ---c--EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCC-eEEEEec--CCEEEEEe----C-CeEEEE
Q 005342          464 ---T--HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFALR--GSHLFSAS----G-GKISIF  530 (701)
Q Consensus       464 ---~--i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-v~~l~~s--~~~l~s~s----d-g~I~iw  530 (701)
                         .  |..|++.+.                 .....++   +....... ...+..+  +++++...    + ..+++.
T Consensus       198 ~~~~~~v~~~~~gt~-----------------~~~d~lv---fe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~  257 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTP-----------------QSEDELV---FEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLL  257 (414)
T ss_dssp             CGCCEEEEEEETTS------------------GGG-EEE---EC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEE
T ss_pred             CCCCcEEEEEECCCC-----------------hHhCeeE---EeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEE
Confidence               2  344433221                 1111233   21122222 4566677  77766543    3 468899


Q ss_pred             eCCCC----cEEEEecCCCCCe-EEEEEcCCC--eEEEE--eCCCcEEEEeCCCCce---EEeecCCCCCeEEEEEecCC
Q 005342          531 SLETF----QTLATFANPPPIA-TYFILLPQD--LFAFG--FDDSSILVHCPCTKKT---KAKLKGHQNRITCLAYSLSL  598 (701)
Q Consensus       531 d~~~~----~~~~~~~~~~~~i-~~l~~spdg--~l~~g--s~dg~I~iwd~~~~~~---~~~l~~h~~~V~~v~~spdg  598 (701)
                      |+..+    .....+......+ ..+... .+  ++.+.  ..++.|...++.+...   ...+..|...+.-..+...+
T Consensus       258 d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~  336 (414)
T PF02897_consen  258 DLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK  336 (414)
T ss_dssp             ECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET
T ss_pred             eccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC
Confidence            98774    2333333333344 334444 44  44443  2234777778776642   33455565543333444445


Q ss_pred             CEEE-EEeCCC--eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE---E--ecCeEEEEECCCCce
Q 005342          599 NVLV-SSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I--HEGQIDVYEAPTLNH  670 (701)
Q Consensus       599 ~~l~-s~s~D~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s---g--~Dg~I~iwd~~~g~~  670 (701)
                      .+|+ +...++  .|+++++..+...  ..+. ++ ..    +.|..+...+++..+..   |  .-+++.-||+.+++.
T Consensus       337 ~~Lvl~~~~~~~~~l~v~~~~~~~~~--~~~~-~p-~~----g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  337 DYLVLSYRENGSSRLRVYDLDDGKES--REIP-LP-EA----GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             TEEEEEEEETTEEEEEEEETT-TEEE--EEEE-SS-SS----SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CEEEEEEEECCccEEEEEECCCCcEE--eeec-CC-cc----eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            5444 444444  6899999933222  2222 22 11    55677776777665543   3  467899999999885


Q ss_pred             e
Q 005342          671 T  671 (701)
Q Consensus       671 ~  671 (701)
                      .
T Consensus       409 ~  409 (414)
T PF02897_consen  409 T  409 (414)
T ss_dssp             E
T ss_pred             E
Confidence            3

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.72  E-value=5.1e-05  Score=46.30  Aligned_cols=27  Identities=33%  Similarity=0.571  Sum_probs=24.5

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHHHHHhc
Q 005342           14 THLITLIMKFLEEENFKESLQALEQES   40 (701)
Q Consensus        14 ~e~~rli~q~l~~~g~~~s~~~l~~Es   40 (701)
                      +++.+||.+||.+.||.+||.+|.+||
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            478999999999999999999999997

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.70  E-value=0.0014  Score=69.89  Aligned_cols=89  Identities=17%  Similarity=0.214  Sum_probs=66.5

Q ss_pred             EEEEeCCCCce----EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEE
Q 005342          568 ILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI  643 (701)
Q Consensus       568 I~iwd~~~~~~----~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v  643 (701)
                      -.+|++...+.    +..+ ...+.|.+++++|+...++.|+.||+|.+||...+-.   ...+    ..    -..+.+
T Consensus       238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~k----a~----~~P~~i  305 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAK----AE----FIPTLI  305 (545)
T ss_pred             EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee---eeee----ec----ccceEE
Confidence            34566554432    1222 2677899999999999999999999999999988631   1112    11    557899


Q ss_pred             EEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342          644 QFHPDQIHLLSI-HEGQIDVYEAPTL  668 (701)
Q Consensus       644 ~~spdg~~l~sg-~Dg~I~iwd~~~g  668 (701)
                      +|+|+|.++++| ..|.+.+||+.-.
T Consensus       306 aWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  306 AWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEcCCCcEEEEEcCCceEEEEEeecC
Confidence            999999999997 6699999998643

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.67  E-value=0.012  Score=60.13  Aligned_cols=170  Identities=13%  Similarity=0.090  Sum_probs=102.6

Q ss_pred             CeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCC-----CCCeEEEEEcCCC-eEEEEeC-----------CCcE
Q 005342          508 SISCFALR--GSHLFSASGGKISIFSLETFQTLATFANP-----PPIATYFILLPQD-LFAFGFD-----------DSSI  568 (701)
Q Consensus       508 ~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~-----~~~i~~l~~spdg-~l~~gs~-----------dg~I  568 (701)
                      .+.++..-  +..|+++. ..+.+++.+++..+..+...     ....+...+.|+| +.+....           -|.+
T Consensus        67 ~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l  145 (307)
T COG3386          67 GFSSGALIDAGGRLIACE-HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL  145 (307)
T ss_pred             CcccceeecCCCeEEEEc-cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence            33444433  55555554 33666676666553333211     2344788899999 4443322           1346


Q ss_pred             EEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCC--CeeeeeeeeeeccCCCCCCCCCeEEEEE
Q 005342          569 LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQF  645 (701)
Q Consensus       569 ~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~~--g~~~~~~~l~~~~~~~~~~~~~v~~v~~  645 (701)
                      +.+|. .+..++.+.+|-..-+.++||||++.|+.+ +..+.|.-|++..  +............. ..   +..-.++.
T Consensus       146 yr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~---G~PDG~~v  220 (307)
T COG3386         146 YRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE-EP---GLPDGMAV  220 (307)
T ss_pred             EEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC-CC---CCCCceEE
Confidence            66664 567777777766677899999999866655 4458888888763  22111111110111 11   44556777


Q ss_pred             cCCCCEEEEE-ecC-eEEEEECCCCceeeeeee----eeEEEEEe
Q 005342          646 HPDQIHLLSI-HEG-QIDVYEAPTLNHTSQVLL----ISHIMFVQ  684 (701)
Q Consensus       646 spdg~~l~sg-~Dg-~I~iwd~~~g~~~~~l~~----i~~~~fs~  684 (701)
                      ..+|.+-+++ .+| .|.+|+.. |+++..+..    +++++|-.
T Consensus       221 DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         221 DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence            7888887654 443 89999997 998887765    77888853

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.67  E-value=0.03  Score=58.10  Aligned_cols=254  Identities=14%  Similarity=0.049  Sum_probs=117.7

Q ss_pred             EEEcCCCCeEEEEc-CCCc--EEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          398 STSLPDADSAVCAK-SLEK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       398 l~~spdg~~l~s~s-~d~~--v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      -+|.+||+.|+.++ .||.  +.+-|+.    +++..+++-  . .........++|+++.++....+..+.-.|+.+.+
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~----t~~i~QLTd--g-~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e  113 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLA----TGEITQLTD--G-PGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE  113 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETT----T-EEEE-----S-S-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcc----cCEEEECcc--C-CCCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence            45889997766654 4555  4455665    666666552  1 11222245577888887776666677666664432


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEE----------------------Ee-CCeE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFS----------------------AS-GGKI  527 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s----------------------~s-dg~I  527 (701)
                      .                   +.+.    ..+...+-...|.    +..++.                      +. ...|
T Consensus       114 ~-------------------~~vy----~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i  170 (386)
T PF14583_consen  114 E-------------------RVVY----EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRI  170 (386)
T ss_dssp             E-------------------EEEE----E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEE
T ss_pred             E-------------------EEEE----ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceE
Confidence            1                   0111    1112222222221    222211                      11 2357


Q ss_pred             EEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCC----cEEEEeCCC-CceEEeecCCCC--CeEEEEEecCC
Q 005342          528 SIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS----SILVHCPCT-KKTKAKLKGHQN--RITCLAYSLSL  598 (701)
Q Consensus       528 ~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg----~I~iwd~~~-~~~~~~l~~h~~--~V~~v~~spdg  598 (701)
                      .-.|+.+|+....+. ....+..+.++|..  .|+.+-+..    .-+||-+++ +...+.+..|..  .+.-=-|.|||
T Consensus       171 ~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG  249 (386)
T PF14583_consen  171 FTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDG  249 (386)
T ss_dssp             EEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTS
T ss_pred             EEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCC
Confidence            778888887655555 56678899999988  555544321    235555443 333444433332  23334789999


Q ss_pred             CEEEEEe-----CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecC--------------
Q 005342          599 NVLVSSG-----ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG--------------  658 (701)
Q Consensus       599 ~~l~s~s-----~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg--------------  658 (701)
                      ..|..-+     .+..|.-+|..+++...   +...        .......-++||++++. |.|.              
T Consensus       250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~---~~~~--------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~  318 (386)
T PF14583_consen  250 STIWYDSYTPGGQDFWIAGYDPDTGERRR---LMEM--------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEN  318 (386)
T ss_dssp             S-EEEEEEETTT--EEEEEE-TTT--EEE---EEEE---------SEEEEEE-TTSSEEEEEE-----------------
T ss_pred             CEEEEEeecCCCCceEEEeeCCCCCCceE---EEeC--------CceeeeEEcCCCCEEEecCCCCCccccccccceecC
Confidence            9665432     35578888999875322   2211        23456677899999886 5432              


Q ss_pred             --eEEEEECCCCceeeee---------ee-----eeEEEEEee--EEeeeecc
Q 005342          659 --QIDVYEAPTLNHTSQV---------LL-----ISHIMFVQI--VVKFHSFK  693 (701)
Q Consensus       659 --~I~iwd~~~g~~~~~l---------~~-----i~~~~fs~~--~~~f~~~~  693 (701)
                        -|+++++++++.....         .+     --+..|||+  .+-|.|-.
T Consensus       319 ~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~  371 (386)
T PF14583_consen  319 DPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM  371 (386)
T ss_dssp             --EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T
T ss_pred             CcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC
Confidence              4677888877653211         11     346889998  45555544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.66  E-value=0.0015  Score=74.08  Aligned_cols=173  Identities=11%  Similarity=0.102  Sum_probs=106.1

Q ss_pred             eCCCCeEEeecccCCCCCCeEEEEec--------CCEEEEEeCCeEEEEeCCCC--cEEE----EecCCCCCeEEEEEcC
Q 005342          490 QPSSKLVMTNDIAADPKDSISCFALR--------GSHLFSASGGKISIFSLETF--QTLA----TFANPPPIATYFILLP  555 (701)
Q Consensus       490 d~~~~~~~~~~~~~~~~~~v~~l~~s--------~~~l~s~sdg~I~iwd~~~~--~~~~----~~~~~~~~i~~l~~sp  555 (701)
                      |+..|+++.. +......+|.+++-+        .+.++.-+++.+..||.+-.  +.+.    .+ ......+|++-+.
T Consensus       510 DLe~GKVV~e-W~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~  587 (794)
T PF08553_consen  510 DLERGKVVEE-WKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTE  587 (794)
T ss_pred             ecCCCcEEEE-eecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecC
Confidence            6677776654 222233346666553        23344445889999998753  2332    12 1345678999999


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC--CCe--------------
Q 005342          556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV--GWK--------------  619 (701)
Q Consensus       556 dg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~--~g~--------------  619 (701)
                      +|+||+|+.+|.|++||.-..+....+.|-..+|..|..+.||+||+..+ +..+-+++..  .|+              
T Consensus       588 ~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~  666 (794)
T PF08553_consen  588 DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKD  666 (794)
T ss_pred             CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEeeecCCccCccccccccCcc
Confidence            99999999999999999433333344566678999999999999988655 4577777753  110              


Q ss_pred             -eeeeeeeeeccCCCC-------CCCCCeEEEEEcC----CCCEEEEEecCeEEEEECC
Q 005342          620 -KLCSKFLHSFQTGLV-------PETTIVNHIQFHP----DQIHLLSIHEGQIDVYEAP  666 (701)
Q Consensus       620 -~~~~~~l~~~~~~~~-------~~~~~v~~v~~sp----dg~~l~sg~Dg~I~iwd~~  666 (701)
                       +-....|. +...|.       ...-.-+...|+-    ..+.|+++....+.+|++.
T Consensus       667 ~kp~Pr~L~-L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~  724 (794)
T PF08553_consen  667 KKPQPRRLQ-LKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFK  724 (794)
T ss_pred             CCCCCeEEe-cCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHH
Confidence             00111222 221121       0002223455542    3567888888889999985

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.65  E-value=0.0025  Score=68.72  Aligned_cols=195  Identities=9%  Similarity=0.001  Sum_probs=98.8

Q ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEE
Q 005342          442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLF  520 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~  520 (701)
                      .....+.++|+|+++++ +.||...+|.-                     ...+-.       ..+.-..++|. .+.+|
T Consensus        33 ~~p~~ls~npngr~v~V-~g~geY~iyt~---------------------~~~r~k-------~~G~g~~~vw~~~n~yA   83 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTA---------------------LAWRNK-------AFGSGLSFVWSSRNRYA   83 (443)
T ss_dssp             S--SEEEE-TTSSEEEE-EETTEEEEEET---------------------TTTEEE-------EEEE-SEEEE-TSSEEE
T ss_pred             cCCeeEEECCCCCEEEE-EcCCEEEEEEc---------------------cCCccc-------ccCceeEEEEecCccEE
Confidence            44678999999998877 56677778742                     111111       12334467777 55666


Q ss_pred             EEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC
Q 005342          521 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL  598 (701)
Q Consensus       521 s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg  598 (701)
                      +-. +++|.++.--+......+.. +..+..+..   | .++..+.+ .|.+||..+++.++++...  +|..+.|+++|
T Consensus        84 v~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g  156 (443)
T PF04053_consen   84 VLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDG  156 (443)
T ss_dssp             EE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTS
T ss_pred             EEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCC
Confidence            666 78899963223333233432 223444433   7 66665554 8999999999999998733  48999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCC---------eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342          599 NVLVSSGADAQLCVWDAVGW---------KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN  669 (701)
Q Consensus       599 ~~l~s~s~D~~I~vwd~~~g---------~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~  669 (701)
                      .++|-.+.+ .++|++....         -......+.++   .    ..|.+..|..| -++.+... .++-  +-+|+
T Consensus       157 ~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~----~~IkSg~W~~d-~fiYtT~~-~lkY--l~~Ge  224 (443)
T PF04053_consen  157 ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---S----ERIKSGCWVED-CFIYTTSN-HLKY--LVNGE  224 (443)
T ss_dssp             SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--------S--SEEEEETT-EEEEE-TT-EEEE--EETTE
T ss_pred             CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---c----ceeEEEEEEcC-EEEEEcCC-eEEE--EEcCC
Confidence            999988755 7888776543         00001222211   1    67888888876 33334333 6665  33343


Q ss_pred             --eeeeeee-eeEEEEEe
Q 005342          670 --HTSQVLL-ISHIMFVQ  684 (701)
Q Consensus       670 --~~~~l~~-i~~~~fs~  684 (701)
                        .+++++. +.=+.+.|
T Consensus       225 ~~~i~~ld~~~yllgy~~  242 (443)
T PF04053_consen  225 TGIIAHLDKPLYLLGYLP  242 (443)
T ss_dssp             EEEEEE-SS--EEEEEET
T ss_pred             cceEEEcCCceEEEEEEc
Confidence              2444443 33344443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.60  E-value=3.2e-05  Score=82.08  Aligned_cols=200  Identities=13%  Similarity=0.129  Sum_probs=128.2

Q ss_pred             CCCEEEEEEecCCC--EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---
Q 005342          441 GGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  515 (701)
Q Consensus       441 ~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---  515 (701)
                      ...+.|++++-+.+  .+++|..+|.|.+-.+....                 .++...    .+++..+.++++|+   
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-----------------dSs~E~----tp~~ar~Ct~lAwneLD  114 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-----------------DSSAEV----TPGYARPCTSLAWNELD  114 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcc-----------------ccccee----ccccccccccccccccc
Confidence            45677777765544  56778889999998663321                 112222    25678899999999   


Q ss_pred             CCEEEEEe-----CCeEEEEeCCCCc--E--EEEecC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC
Q 005342          516 GSHLFSAS-----GGKISIFSLETFQ--T--LATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG  584 (701)
Q Consensus       516 ~~~l~s~s-----dg~I~iwd~~~~~--~--~~~~~~-~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~  584 (701)
                      .+.||+|-     |..+.+||+.++-  +  ...|.+ ......+++|..+. ++.+|.....+.++|++.... ..-.-
T Consensus       115 tn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~sv  193 (783)
T KOG1008|consen  115 TNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSV  193 (783)
T ss_pred             HHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhh
Confidence            45677663     3679999998762  1  122222 33445688898888 999999999999999883321 11111


Q ss_pred             CCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCE-EEE-E-ecCeE
Q 005342          585 HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLS-I-HEGQI  660 (701)
Q Consensus       585 h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~-l~s-g-~Dg~I  660 (701)
                      .+..+..+..+| .++|+++-. ||.|.+||....   ...++..+.....+....+..++|+|...- +++ . +.++|
T Consensus       194 nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn---ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tI  269 (783)
T KOG1008|consen  194 NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN---IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITI  269 (783)
T ss_pred             hhhhcccceecCCCCCceeccc-cCceeeccchhh---hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceE
Confidence            334566778888 788988766 899999994321   113333222121111134899999997543 333 4 67889


Q ss_pred             EEEECC
Q 005342          661 DVYEAP  666 (701)
Q Consensus       661 ~iwd~~  666 (701)
                      +.+|+.
T Consensus       270 rlydi~  275 (783)
T KOG1008|consen  270 RLYDIC  275 (783)
T ss_pred             EEeccc
Confidence            999984

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.59  E-value=0.043  Score=54.29  Aligned_cols=197  Identities=12%  Similarity=0.061  Sum_probs=105.7

Q ss_pred             CCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CC
Q 005342          440 FGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS  517 (701)
Q Consensus       440 ~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~  517 (701)
                      -...+..++|.|+.+.|++... .+.|..+                     +. +|+++.. +.-...+..-.+++. +.
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~el---------------------s~-~G~vlr~-i~l~g~~D~EgI~y~g~~   76 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYEL---------------------SL-DGKVLRR-IPLDGFGDYEGITYLGNG   76 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEE---------------------ET-T--EEEE-EE-SS-SSEEEEEE-STT
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEE---------------------cC-CCCEEEE-EeCCCCCCceeEEEECCC
Confidence            3556999999998776666655 5666555                     33 3444432 111223567788888 55


Q ss_pred             EEEEEe--CCeEEEEeCCCCc------EEEEec-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC---CceEE
Q 005342          518 HLFSAS--GGKISIFSLETFQ------TLATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---KKTKA  580 (701)
Q Consensus       518 ~l~s~s--dg~I~iwd~~~~~------~~~~~~-----~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~---~~~~~  580 (701)
                      .++..+  ++.+.++++....      ....+.     .+...+-.++|+|.+ .++++-+..-..+|.+..   ...+.
T Consensus        77 ~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~  156 (248)
T PF06977_consen   77 RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF  156 (248)
T ss_dssp             EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E
T ss_pred             EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee
Confidence            555555  7999998883321      122222     234568999999998 666666766666665543   11111


Q ss_pred             --ee------cCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCC---CCCCCeEEEEEcCC
Q 005342          581 --KL------KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV---PETTIVNHIQFHPD  648 (701)
Q Consensus       581 --~l------~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~---~~~~~v~~v~~spd  648 (701)
                        ..      ......+.+++++| .+.+++-+.....|.++| ..|+......   +..+..   ..-...-.|+|.++
T Consensus       157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~---L~~g~~gl~~~~~QpEGIa~d~~  232 (248)
T PF06977_consen  157 VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS---LDRGFHGLSKDIPQPEGIAFDPD  232 (248)
T ss_dssp             EEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE----STTGGG-SS---SEEEEEE-TT
T ss_pred             eccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE---eCCcccCcccccCCccEEEECCC
Confidence              11      11334688999999 466777788888999999 5555443333   333221   00024678999999


Q ss_pred             CCEEEEEecCeEEEE
Q 005342          649 QIHLLSIHEGQIDVY  663 (701)
Q Consensus       649 g~~l~sg~Dg~I~iw  663 (701)
                      |++.+++.-+..+++
T Consensus       233 G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  233 GNLYIVSEPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTEEEEE
T ss_pred             CCEEEEcCCceEEEe
Confidence            999888876666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.57  E-value=0.002  Score=69.21  Aligned_cols=180  Identities=13%  Similarity=0.102  Sum_probs=111.0

Q ss_pred             eEEEEEcCCCCeEEEEc---CC-CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEe
Q 005342          395 SRESTSLPDADSAVCAK---SL-EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWK  469 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s---~d-~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd  469 (701)
                      +...+|+|+++.++..+   .. ..+.+++++    +++...+. .   ..+.-..-+|+|||++++.++. ||...+|-
T Consensus       195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~----~g~~~~i~-~---~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLN----TGKRPVIL-N---FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             eeccccCcCCCceEEEEEecCCCceEEEEecc----CCccceee-c---cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            66788999999877652   22 468888987    44433322 1   1334455689999998887665 78777773


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC--C--eEEEEeCCCCcEEEEecC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG--G--KISIFSLETFQTLATFAN  543 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd--g--~I~iwd~~~~~~~~~~~~  543 (701)
                      .                   |..++....  +.. ..+.-..-.|+  |+.++..+|  |  .|.++|.+.+.. ..+..
T Consensus       267 ~-------------------dl~~~~~~~--Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~  323 (425)
T COG0823         267 M-------------------DLDGKNLPR--LTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF  323 (425)
T ss_pred             E-------------------cCCCCccee--ccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec
Confidence            3                   555555322  211 11222244566  888888873  3  577788866554 33332


Q ss_pred             CCCCeEEEEEcCCC-eEEEEeC-CCc--EEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC
Q 005342          544 PPPIATYFILLPQD-LFAFGFD-DSS--ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA  606 (701)
Q Consensus       544 ~~~~i~~l~~spdg-~l~~gs~-dg~--I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~  606 (701)
                      ....-..-.|+||| +|+..+. +|.  |.+.|+.++..++.+. +......-.|.|+|.++...+.
T Consensus       324 ~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         324 SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence            32223378899999 6655543 454  7778877766555554 3334455688889987776554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.57  E-value=0.025  Score=60.15  Aligned_cols=223  Identities=12%  Similarity=0.137  Sum_probs=119.4

Q ss_pred             CEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc-----cccccc--------eeeEEeeC------C--CCeEEeecc
Q 005342          443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL-----EEENVN--------MESQLYQP------S--SKLVMTNDI  501 (701)
Q Consensus       443 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~-----g~~~~~--------~~i~~~d~------~--~~~~~~~~~  501 (701)
                      .|+.+.|+++..-|++|...|.|.+|.+..+....     ......        ..-.+-|.      .  .| ++...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~g-f~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEG-FLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEE-EEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccc-cCchhh
Confidence            58899999998899999999999999986664311     000000        00111111      1  12 222112


Q ss_pred             cCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEe--cC------CCCCeEEEEEc-----CCC----eEEEE
Q 005342          502 AADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF--AN------PPPIATYFILL-----PQD----LFAFG  562 (701)
Q Consensus       502 ~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~--~~------~~~~i~~l~~s-----pdg----~l~~g  562 (701)
                      .....++|++++.| =.+++.|. +|.+.|.|++....+..-  ..      ....++++.|+     .|+    .+++|
T Consensus        82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            23447899999999 66899999 899999999877766542  21      23456777776     233    88999


Q ss_pred             eCCCcEEEEeCC--C-Cc----eEEeecCCCCCeEEEE-EecC-C-------------------C-EEEEEeCCCeEEEE
Q 005342          563 FDDSSILVHCPC--T-KK----TKAKLKGHQNRITCLA-YSLS-L-------------------N-VLVSSGADAQLCVW  613 (701)
Q Consensus       563 s~dg~I~iwd~~--~-~~----~~~~l~~h~~~V~~v~-~spd-g-------------------~-~l~s~s~D~~I~vw  613 (701)
                      +..|.+.+|.+.  . +.    .......+.++|..+. ++.+ |                   + +++. ..+..|+|+
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~  240 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVF  240 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEE
Confidence            999999999764  1 21    1222223556666654 4222 0                   1 4444 446789999


Q ss_pred             ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc-----CCCCEEEE-EecCeEEEEECCCCceeeeeee
Q 005342          614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-----PDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s-----pdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ...+.+... +...    .+    ..+..+.+-     ..+..|++ ..+|.|+++.+...+.+..+..
T Consensus       241 ~~~~~k~~~-K~~~----~~----~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  241 KPPKSKGAH-KSFD----DP----FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             -TT---EEE-EE-S----S-----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             eCCCCcccc-eeec----cc----cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence            998864322 1111    11    233344442     23444555 4899999999999888776654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.53  E-value=0.057  Score=53.41  Aligned_cols=202  Identities=11%  Similarity=0.074  Sum_probs=104.8

Q ss_pred             CCCc-eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          391 DNNQ-SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      +-.. ++.++|.|+.. +++.....+.|...+..    +.....+.+  .+ .+..-.+++..++.++++--.++.+.+.
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~----G~vlr~i~l--~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD----GKVLRRIPL--DG-FGDYEGITYLGNGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------EEEEEE---SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC----CCEEEEEeC--CC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence            3344 89999999865 55556666777767763    333334333  32 4678899998888776655458889888


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC---CcEEEEe-
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET---FQTLATF-  541 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~---~~~~~~~-  541 (701)
                      ++......    .        +...-+.+...+...+...+-.++|+  ++.++.+. ..-..+|.+..   ...+... 
T Consensus        92 ~~~~~~~~----~--------~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   92 TIDDDTTS----L--------DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             EE----TT--------------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             EEeccccc----c--------chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence            77332110    0        00000001111212345568899998  66666666 44344444432   1111111 


Q ss_pred             -------cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCC---------CCeEEEEEecCCCEEEE
Q 005342          542 -------ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQ---------NRITCLAYSLSLNVLVS  603 (701)
Q Consensus       542 -------~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~v~~spdg~~l~s  603 (701)
                             ......+.+++++|..  +++.+..+..|..+| .+|+++..+.-..         ...-.|+|.++|++.+ 
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-  237 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-  237 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-
Confidence                   1123356889999987  777778888999999 6777766543211         2467899999997544 


Q ss_pred             EeCCCeEEEE
Q 005342          604 SGADAQLCVW  613 (701)
Q Consensus       604 ~s~D~~I~vw  613 (701)
                      .|+-+..+++
T Consensus       238 vsEpNlfy~f  247 (248)
T PF06977_consen  238 VSEPNLFYRF  247 (248)
T ss_dssp             EETTTEEEEE
T ss_pred             EcCCceEEEe
Confidence            5567776665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.52  E-value=0.082  Score=56.99  Aligned_cols=214  Identities=12%  Similarity=0.059  Sum_probs=108.9

Q ss_pred             EEEcCCCCeEEEEcCC----------C-cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          398 STSLPDADSAVCAKSL----------E-KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       398 l~~spdg~~l~s~s~d----------~-~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      ++.+|.|--+|....+          . .|.+|+..    +..+..+..  .  .+.+.++.|+.+.. |++...||.++
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s----G~ll~~i~w--~--~~~iv~~~wt~~e~-LvvV~~dG~v~  104 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS----GKLLSSIPW--D--SGRIVGMGWTDDEE-LVVVQSDGTVR  104 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC----CCEeEEEEE--C--CCCEEEEEECCCCe-EEEEEcCCEEE
Confidence            4555655555554333          2 48888885    444444433  2  38999999998654 67778999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCc-EEEEe---
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQ-TLATF---  541 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~-~~~~~---  541 (701)
                      +||+.+...             +  .-+..+.  ...-....+....+. ...++...++.+.+.+--... ..+.+   
T Consensus       105 vy~~~G~~~-------------f--sl~~~i~--~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~  167 (410)
T PF04841_consen  105 VYDLFGEFQ-------------F--SLGEEIE--EEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEI  167 (410)
T ss_pred             EEeCCCcee-------------e--chhhhcc--ccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccC
Confidence            998743210             0  0011000  000111222222222 223333335555444322211 11111   


Q ss_pred             cCCC-----C-CeEE-EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342          542 ANPP-----P-IATY-FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW  613 (701)
Q Consensus       542 ~~~~-----~-~i~~-l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vw  613 (701)
                      .+..     . .... ..++.+. ..+....++.+++.+-...+.   +. ..+++..++.||+|+++|.-..+|.+.|.
T Consensus       168 p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~  243 (410)
T PF04841_consen  168 PGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVV  243 (410)
T ss_pred             CCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence            1100     0 0011 2344444 444444555666444332211   22 24689999999999999999999999998


Q ss_pred             ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342          614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ  649 (701)
Q Consensus       614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg  649 (701)
                      +..-.+..+.     +..+..   .....+.|.-+.
T Consensus       244 ssDf~~~~~e-----~~~~~~---~~p~~~~WCG~d  271 (410)
T PF04841_consen  244 SSDFSEKLCE-----FDTDSK---SPPKQMAWCGND  271 (410)
T ss_pred             ECcccceeEE-----eecCcC---CCCcEEEEECCC
Confidence            8765433222     222211   445566666553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.48  E-value=0.039  Score=58.73  Aligned_cols=250  Identities=12%  Similarity=0.072  Sum_probs=128.6

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC----------------------ceeEeec-----------C---CC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS----------------------ECRTLLL-----------P---DN  438 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~----------------------~~~~l~~-----------~---~~  438 (701)
                      |..+.|.++..-|+.|...|.|.+|.+......+                      .+..++.           |   ..
T Consensus         4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~   83 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD   83 (395)
T ss_dssp             EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred             EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence            7889999999999999999999998775332111                      1101000           0   01


Q ss_pred             CCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---
Q 005342          439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  515 (701)
Q Consensus       439 ~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---  515 (701)
                      ...++|++++.|.=| +++.|..+|.+.|.|+++...            +|...-..   ..........++++.|+   
T Consensus        84 ~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPav------------I~~~~i~~---~~~~~~~~~~vt~ieF~vm~  147 (395)
T PF08596_consen   84 AKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAV------------IYNENIRE---SFLSKSSSSYVTSIEFSVMT  147 (395)
T ss_dssp             --S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEE------------EEEEEGGG-----T-SS----EEEEEEEEEE
T ss_pred             ccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeE------------Eeeccccc---cccccccccCeeEEEEEEEe
Confidence            236889999997444 889999999999998855422            11100000   00112344567788887   


Q ss_pred             --C-----CEEEEEe-CCeEEEEeCC--C-CcE----EEEecCCCCCeEEEE-EcCC-----------------C----e
Q 005342          516 --G-----SHLFSAS-GGKISIFSLE--T-FQT----LATFANPPPIATYFI-LLPQ-----------------D----L  558 (701)
Q Consensus       516 --~-----~~l~s~s-dg~I~iwd~~--~-~~~----~~~~~~~~~~i~~l~-~spd-----------------g----~  558 (701)
                        +     -.+++|+ .|.+.+|.+.  . +..    ......+.+++..+. ++.+                 |    .
T Consensus       148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g  227 (395)
T PF08596_consen  148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG  227 (395)
T ss_dssp             -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred             cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence              1     2467777 7999999864  1 211    112223445554444 3211                 1    2


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe-----cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCC
Q 005342          559 FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS-----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  633 (701)
Q Consensus       559 l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s-----pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~  633 (701)
                      +++...+..++++...+.+..++.....-....+.+-     ..+..|++-..+|.|+++.+..=+.+....+...  -.
T Consensus       228 ~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~--~d  305 (395)
T PF08596_consen  228 YVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP--LD  305 (395)
T ss_dssp             EEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-----
T ss_pred             EEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCc--cc
Confidence            4444556789999988877766554222233344452     3566888889999999999998543332222100  01


Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342          634 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  665 (701)
Q Consensus       634 ~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~  665 (701)
                      .   ..+....++++|..++-.....+.++.+
T Consensus       306 ~---~~~~~ssis~~Gdi~~~~gpsE~~l~sv  334 (395)
T PF08596_consen  306 S---RRLSSSSISRNGDIFYWTGPSEIQLFSV  334 (395)
T ss_dssp             H---HHHTT-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred             c---ccccccEECCCCCEEEEeCcccEEEEEE
Confidence            1   3445677899999887654444444433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.42  E-value=0.018  Score=60.92  Aligned_cols=262  Identities=12%  Similarity=0.090  Sum_probs=126.1

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG  380 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  380 (701)
                      +...++|+++++....... ...+.  ...|||+      ..++.|.+++..++...+.-         ..|...+..|.
T Consensus        23 ~~y~i~d~~~~~~~~l~~~-~~~~~--~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT---------~dg~~~i~nG~   90 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPP-PPKLQ--DAKWSPDGKYIAFVRDNNLYLRDLATGQETQLT---------TDGEPGIYNGV   90 (353)
T ss_dssp             EEEEEEETTTTEEEESS-E-ETTBS--EEEE-SSSTEEEEEETTEEEEESSTTSEEEESE---------S--TTTEEESB
T ss_pred             eeEEEEecCCCceEECcCC-ccccc--cceeecCCCeeEEEecCceEEEECCCCCeEEec---------cccceeEEcCc
Confidence            5567888888766654444 44566  8899999      66788999988887554431         22211111110


Q ss_pred             -CCCCCCccccCCCceEEEEEcCCCCeEEEEcCC-CcEEEEeccccCCCC----ceeEeecCCC----------------
Q 005342          381 -DDSNDSSCFNDNNQSRESTSLPDADSAVCAKSL-EKSVNLKLQLINEPS----ECRTLLLPDN----------------  438 (701)
Q Consensus       381 -D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d-~~v~iw~~~~~~~~~----~~~~l~~~~~----------------  438 (701)
                       |-.-..+.+..   -..+.|||||++||....| ..|..+.+.......    +...+..|..                
T Consensus        91 ~dwvyeEEv~~~---~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~  167 (353)
T PF00930_consen   91 PDWVYEEEVFDR---RSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLAS  167 (353)
T ss_dssp             --HHHHHHTSSS---SBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSS
T ss_pred             cceecccccccc---ccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCC
Confidence             00000000111   2357799999999876433 333333322111111    1111111111                


Q ss_pred             -------------CCCCCEEEEEEecCCCEEEEEEC--C-CcEEEEecCCCCccccccccceeeEEeeCCCCeE--Eeec
Q 005342          439 -------------SFGGRVVRLIYSHSGDFLVALTQ--T-ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV--MTND  500 (701)
Q Consensus       439 -------------~~~~~v~~l~~spdg~~l~s~s~--d-g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~--~~~~  500 (701)
                                   .....+..+.|+++++.++..-.  + +.+.+                   .++|..++..  +...
T Consensus       168 ~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l-------------------~~~d~~tg~~~~~~~e  228 (353)
T PF00930_consen  168 GKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL-------------------VLCDASTGETRVVLEE  228 (353)
T ss_dssp             TCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE-------------------EEEEECTTTCEEEEEE
T ss_pred             CcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE-------------------EEEECCCCceeEEEEe
Confidence                         12334666777777773333222  2 22222                   2235444431  1111


Q ss_pred             ccCCCCCCeEEEEe--c-CCE-EEEEe-CC--eEEEEeCCCCcEEEEecCCCCCeEE-EEEcCCC--eEEEEeCCC----
Q 005342          501 IAADPKDSISCFAL--R-GSH-LFSAS-GG--KISIFSLETFQTLATFANPPPIATY-FILLPQD--LFAFGFDDS----  566 (701)
Q Consensus       501 ~~~~~~~~v~~l~~--s-~~~-l~s~s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~-l~~spdg--~l~~gs~dg----  566 (701)
                      ...+--..-....+  . +.. +.... +|  .|.+++..++. .+.+....-.|.. +.+++++  ...++..++    
T Consensus       229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r  307 (353)
T PF00930_consen  229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGER  307 (353)
T ss_dssp             ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSB
T ss_pred             cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCce
Confidence            11111111112332  2 444 44444 54  67777776555 4456555666744 7788887  555665533    


Q ss_pred             cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342          567 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       567 ~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s  603 (701)
                      .++..++.++..+..+....+.-..+.|||+|++++-
T Consensus       308 ~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  308 HLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             EEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred             EEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence            6777777733445556644433368999999997764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.31  E-value=0.0021  Score=69.63  Aligned_cols=118  Identities=12%  Similarity=0.116  Sum_probs=85.9

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      .+.--+++..+ +++.|+.-|.+++|+...++... +..+..+.+.....|++..++|.|+..|.|.|+-+..+.+....
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            34444555566 99999999999999976665432 23334455666788999999999999999999998875433223


Q ss_pred             eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      .+......|   ...|++++|++|+..+++| +.|+|..-.+.+
T Consensus       115 ~~t~~d~~~---~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  115 YVTPCDKSH---KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeccccccC---CceEEEEEecccccEEeecCCCceEEEEEech
Confidence            332222223   3899999999999999999 678888777765

>smart00320 WD40 WD40 repeats

Probab=97.29  E-value=0.00063  Score=44.76  Aligned_cols=39  Identities=31%  Similarity=0.512  Sum_probs=34.5

Q ss_pred             CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342          576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD  614 (701)
Q Consensus       576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd  614 (701)
                      ++.+..+.+|...|.++.|+|++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.28  E-value=0.46  Score=52.69  Aligned_cols=99  Identities=19%  Similarity=0.151  Sum_probs=64.3

Q ss_pred             CCeEEEEeCCCCcEEEEecCCCC--------------------Ce-EEEEEcCCC-eEEEEeCCC---------------
Q 005342          524 GGKISIFSLETFQTLATFANPPP--------------------IA-TYFILLPQD-LFAFGFDDS---------------  566 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~~~--------------------~i-~~l~~spdg-~l~~gs~dg---------------  566 (701)
                      +|.+..+|..+|+.+..+.....                    .+ .+.++++.+ .+++++.++               
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence            57899999999998887753211                    01 134556556 777787665               


Q ss_pred             ---cEEEEeCCCCceEEeecC--CCC----CeEEEEEe----cCCC---EEEEEeCCCeEEEEECCCCeeee
Q 005342          567 ---SILVHCPCTKKTKAKLKG--HQN----RITCLAYS----LSLN---VLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       567 ---~I~iwd~~~~~~~~~l~~--h~~----~V~~v~~s----pdg~---~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                         .|+-+|..+|+..-.++.  |..    ......+.    -+|.   .++.++.+|.++..|.++|+.+-
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W  325 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS  325 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence               799999999998766542  211    00111111    1333   57778889999999999987654

The alignment model contains an 8-bladed beta-propeller.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.38  Score=51.45  Aligned_cols=201  Identities=12%  Similarity=0.065  Sum_probs=132.6

Q ss_pred             CCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE
Q 005342          442 GRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  518 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~  518 (701)
                      ..-..++.++++..+..... ++.+.+.|.                     .+..+... ...+.  ....++++  ++.
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~---------------------~~~~~~~~-~~vG~--~P~~~~~~~~~~~  129 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDT---------------------ATNTVLGS-IPVGL--GPVGLAVDPDGKY  129 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcC---------------------cccceeeE-eeecc--CCceEEECCCCCE
Confidence            34457788888886555554 578888753                     33333322 11122  45567777  666


Q ss_pred             EEEEe----CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCceEE-e----ecCCCC
Q 005342          519 LFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKA-K----LKGHQN  587 (701)
Q Consensus       519 l~s~s----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~-~gs~dg~I~iwd~~~~~~~~-~----l~~h~~  587 (701)
                      +.++.    ++.+.+.|-.+++...+......+ ..++++|+| .++ +...++.|.+.|..+....+ .    ..-+ .
T Consensus       130 vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~  207 (381)
T COG3391         130 VYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-T  207 (381)
T ss_pred             EEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-C
Confidence            66554    378999999999888875543344 899999999 444 44578899999977665553 1    1112 2


Q ss_pred             CeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEE
Q 005342          588 RITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDV  662 (701)
Q Consensus       588 ~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~i  662 (701)
                      ....+.++|+|+.+......   +.+.+.|..++.....   . ...+.    .....+..+|+|+.+.+.  ..+.+.+
T Consensus       208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~---~-~~~~~----~~~~~v~~~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT---D-LPVGS----GAPRGVAVDPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe---c-ccccc----CCCCceeECCCCCEEEEEecCCCeEEE
Confidence            34678999999966554433   5999999998743221   0 11111    134578899999999885  4578999


Q ss_pred             EECCCCceeeeeee
Q 005342          663 YEAPTLNHTSQVLL  676 (701)
Q Consensus       663 wd~~~g~~~~~l~~  676 (701)
                      -|..+.+.......
T Consensus       280 id~~~~~v~~~~~~  293 (381)
T COG3391         280 IDGATDRVVKTGPT  293 (381)
T ss_pred             EeCCCCceeeeecc
Confidence            99988888777655

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.26  E-value=0.034  Score=58.03  Aligned_cols=113  Identities=13%  Similarity=0.164  Sum_probs=74.8

Q ss_pred             CCCCCeEEEEecCCEEEEEeCCeEEEEeCCCCc-EEEEec-CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC-CceEE
Q 005342          504 DPKDSISCFALRGSHLFSASGGKISIFSLETFQ-TLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKA  580 (701)
Q Consensus       504 ~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~~-~~~~~~-~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~-~~~~~  580 (701)
                      ...++|++++--+.+++++.++.|.+|++...+ ....-. .....++++....+ +|++|.....+.++..+. ...+.
T Consensus        86 ~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~  164 (321)
T PF03178_consen   86 EVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLI  164 (321)
T ss_dssp             EESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EE
T ss_pred             eecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEE
Confidence            346789888877556888889999999998777 433322 12335666665543 899999888888764332 22222


Q ss_pred             eecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          581 KLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       581 ~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      .+..  ....++++.|-++++.++.+..+|.+.++....
T Consensus       165 ~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  165 LVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            2221  344688888887777899999999999998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.24  E-value=0.22  Score=55.61  Aligned_cols=54  Identities=17%  Similarity=0.036  Sum_probs=38.8

Q ss_pred             eEEEEeCCCCcEEEEecCCCCC---------eEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceE
Q 005342          526 KISIFSLETFQTLATFANPPPI---------ATYFILLPQD----LFAFGFDDSSILVHCPCTKKTK  579 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~~~~~~---------i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~  579 (701)
                      .|.-.|++||+....++.....         ..-+....+|    .++.+..+|.+++.|.++|+.+
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            6778899999988877642221         1222232455    6789999999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.20  E-value=0.0082  Score=68.31  Aligned_cols=132  Identities=14%  Similarity=0.157  Sum_probs=93.9

Q ss_pred             CCeEEEEeCCCCcEEEEecCCCCC-eEEEEEcC-----CC-eEEEEeCCCcEEEEeCCCCc--eEEe-ec--CCCCCeEE
Q 005342          524 GGKISIFSLETFQTLATFANPPPI-ATYFILLP-----QD-LFAFGFDDSSILVHCPCTKK--TKAK-LK--GHQNRITC  591 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~~~~-i~~l~~sp-----dg-~l~~gs~dg~I~iwd~~~~~--~~~~-l~--~h~~~V~~  591 (701)
                      ...++-.|+++|+.+..+..+... |..++-..     .+ ..++|-.+..++.||.+-..  ++.. ..  ......+|
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~  582 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC  582 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence            478999999999999999876543 55544321     12 56788899999999998532  3321 11  12335677


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342          592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  665 (701)
Q Consensus       592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~  665 (701)
                      ++-+.+| +||.||.+|.||+||. .|.. ....   ++ +-.   .+|.+|..+.||+++++..+..+-+++.
T Consensus       583 ~aTt~~G-~iavgs~~G~IRLyd~-~g~~-AKT~---lp-~lG---~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  583 FATTEDG-YIAVGSNKGDIRLYDR-LGKR-AKTA---LP-GLG---DPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             EEecCCc-eEEEEeCCCcEEeecc-cchh-hhhc---CC-CCC---CCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            7776666 6888999999999994 3321 1112   22 322   8999999999999999988888888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.19  E-value=0.13  Score=50.68  Aligned_cols=173  Identities=16%  Similarity=0.168  Sum_probs=107.6

Q ss_pred             CCCCeEEEEe-c-CCEEEEEe-C--CeEEEEeCCCCcEEEEecCCC-CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCce
Q 005342          505 PKDSISCFAL-R-GSHLFSAS-G--GKISIFSLETFQTLATFANPP-PIATYFILLPQDLFAFGFDDSSILVHCPCTKKT  578 (701)
Q Consensus       505 ~~~~v~~l~~-s-~~~l~s~s-d--g~I~iwd~~~~~~~~~~~~~~-~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~  578 (701)
                      .......+.+ . |.++-+.+ -  ..|+.+|+.+++......-.. .---.++...|......-.++...+||..+.+.
T Consensus        43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred             CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceE
Confidence            3445667888 4 55555555 3  489999999998776654322 222455555554555567899999999999999


Q ss_pred             EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec
Q 005342          579 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE  657 (701)
Q Consensus       579 ~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D  657 (701)
                      +.++.- .+.-+.++  .|++.|+.+....+++++|.++.+......+.  ..+..  -..++.+.|- +|...|=- ..
T Consensus       123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~--~~g~p--v~~LNELE~i-~G~IyANVW~t  194 (264)
T PF05096_consen  123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT--DNGRP--VSNLNELEYI-NGKIYANVWQT  194 (264)
T ss_dssp             EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E--ETTEE-----EEEEEEE-TTEEEEEETTS
T ss_pred             EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE--ECCEE--CCCcEeEEEE-cCEEEEEeCCC
Confidence            988874 34556666  46676766666789999999886544322222  11211  1457778886 55444434 57


Q ss_pred             CeEEEEECCCCceeeeeee-------------------eeEEEEEee
Q 005342          658 GQIDVYEAPTLNHTSQVLL-------------------ISHIMFVQI  685 (701)
Q Consensus       658 g~I~iwd~~~g~~~~~l~~-------------------i~~~~fs~~  685 (701)
                      ..|...|..+|+++..+..                   .+++||.|.
T Consensus       195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~  241 (264)
T PF05096_consen  195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE  241 (264)
T ss_dssp             SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred             CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence            7899999999998886643                   678888765

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.0015  Score=69.83  Aligned_cols=94  Identities=15%  Similarity=0.211  Sum_probs=73.6

Q ss_pred             CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe-EEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       587 ~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v-~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                      ..+..+.|+|.-..+|.+..+|.|-+..+.- .+     +.+++...    ..+ .+++|.|||+.||+| .||+|++-|
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-qR-----lwtip~p~----~~v~~sL~W~~DGkllaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW-QR-----LWTIPIPG----ENVTASLCWRPDGKLLAVGFKDGTIRLHD   90 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEecc-ce-----eEeccCCC----CccceeeeecCCCCEEEEEecCCeEEEEE
Confidence            4688899999999999999999999988883 22     22233222    334 499999999999999 899999999


Q ss_pred             CCCCceeeeeee-----eeEEEEEeeEEeee
Q 005342          665 APTLNHTSQVLL-----ISHIMFVQIVVKFH  690 (701)
Q Consensus       665 ~~~g~~~~~l~~-----i~~~~fs~~~~~f~  690 (701)
                      +++|..+...+.     |+...|++..+...
T Consensus        91 ve~~~~l~~~~~s~e~~is~~~w~~~~v~~e  121 (665)
T KOG4640|consen   91 VEKGGRLVSFLFSVETDISKGIWDRIEVRVE  121 (665)
T ss_pred             ccCCCceeccccccccchheeecccceeecc
Confidence            999998888443     88888876655443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.042  Score=58.05  Aligned_cols=98  Identities=13%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             EEEEEeCCeEEEEeCCCC-c-EEEEecCC----CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEE
Q 005342          518 HLFSASGGKISIFSLETF-Q-TLATFANP----PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC  591 (701)
Q Consensus       518 ~l~s~sdg~I~iwd~~~~-~-~~~~~~~~----~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~  591 (701)
                      .|+.-++..|.-||.+-. . .+...++|    .....|.+-..+|+|++|+.+|.|++||.-.......+.|-..+|..
T Consensus       397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~h  476 (644)
T KOG2395|consen  397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKH  476 (644)
T ss_pred             cEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceee
Confidence            444445888999997632 2 22222222    33457788888889999999999999996333334456777789999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEECC
Q 005342          592 LAYSLSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       592 v~~spdg~~l~s~s~D~~I~vwd~~  616 (701)
                      |..+.||++|+..+ +..+.+-++.
T Consensus       477 VdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  477 VDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             EEeeccCcEEEEec-ccEEEEEEEe
Confidence            99999999887544 5667666654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.15  E-value=0.00018  Score=76.66  Aligned_cols=197  Identities=12%  Similarity=0.147  Sum_probs=118.5

Q ss_pred             eEEEEEcC--CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC-CCEEEEEEC----CCcEEE
Q 005342          395 SRESTSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQ----TATHKL  467 (701)
Q Consensus       395 V~~l~~sp--dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd-g~~l~s~s~----dg~i~v  467 (701)
                      +.|+++.-  |...++.|..+|.|.+-.+......+  +.   ...++...+++++|++- .+.|++|-.    |..+.|
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs--~E---~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS--AE---VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCCccccc--ce---ecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            66676643  44588899999999998886433332  22   11246788999999984 455555532    578889


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc-EEEEecC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-TLATFAN  543 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~-~~~~~~~  543 (701)
                      ||+.+.-.              +|...-.+    ..+......+++|.  .+.+.+|. ...++++|++... ....+  
T Consensus       134 wdi~s~lt--------------vPke~~~f----s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--  193 (783)
T KOG1008|consen  134 WDINSLLT--------------VPKESPLF----SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--  193 (783)
T ss_pred             eecccccC--------------CCcccccc----ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--
Confidence            98755311              11111111    11122344477777  45566666 6799999997322 22222  


Q ss_pred             CCCCeEEEEEcC-CC-eEEEEeCCCcEEEEe-CCCC-ceEEeecCCC----CCeEEEEEecCCC-EEEEEeC-CCeEEEE
Q 005342          544 PPPIATYFILLP-QD-LFAFGFDDSSILVHC-PCTK-KTKAKLKGHQ----NRITCLAYSLSLN-VLVSSGA-DAQLCVW  613 (701)
Q Consensus       544 ~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd-~~~~-~~~~~l~~h~----~~V~~v~~spdg~-~l~s~s~-D~~I~vw  613 (701)
                      ....+..+.++| .+ ++++.+ ||.|-+|| .+.- .++..+...+    ..+..++|.|... .+++.+. .++|+.+
T Consensus       194 nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly  272 (783)
T KOG1008|consen  194 NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY  272 (783)
T ss_pred             hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence            234567788888 44 666655 99999999 3322 2222222112    2489999999533 5555554 5689999


Q ss_pred             ECCC
Q 005342          614 DAVG  617 (701)
Q Consensus       614 d~~~  617 (701)
                      |+..
T Consensus       273 di~~  276 (783)
T KOG1008|consen  273 DICV  276 (783)
T ss_pred             cccc
Confidence            9864

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.0031  Score=64.12  Aligned_cols=117  Identities=17%  Similarity=0.180  Sum_probs=90.9

Q ss_pred             chhHHHHHHHHHHHHhcHHHHHHHHHHhcCCch----------hHHHHHHHHhcCCHHHHHHHhccc-ccccCCccccee
Q 005342           12 TYTHLITLIMKFLEEENFKESLQALEQESKIFF----------NVHRFGEIVMNGEWEKAEKYLSAF-TKLDDSNHSKKM   80 (701)
Q Consensus        12 ~~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~----------~~~~~~~~i~~G~w~~~~~~l~~~-~~~~~~~~~~~~   80 (701)
                      +.+.+..+|..++...|..+.+..|-+|||...          ++.++-+++..||-.-|++.+..- ..+.+..  ..+
T Consensus       115 ~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~--s~L  192 (394)
T KOG2817|consen  115 TSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS--SSL  192 (394)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc--ccH
Confidence            445568999999999999999999999999985          388889999999999999998654 2223222  228


Q ss_pred             hhhhhhhhhhHHHhcCChh--HHHHHHHhcccccccCChhHHH-HHHHHhccc
Q 005342           81 FFELRKHKYCEALCRHERT--EADSIFRKDLKVFSVSQNRIDC-ELAELLALK  130 (701)
Q Consensus        81 ~~~l~~q~~lEll~~~~~~--~a~~~L~~~l~~~~~~~~~~~~-~l~~~l~~~  130 (701)
                      .|.|..++|++++..|...  +|+.-.|+.++|+.......++ -...++.+.
T Consensus       193 E~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl~~l~  245 (394)
T KOG2817|consen  193 EFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSLLYLR  245 (394)
T ss_pred             HHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence            8999999999999998888  9999999999999543322233 334444443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.0026  Score=68.13  Aligned_cols=93  Identities=15%  Similarity=0.099  Sum_probs=74.1

Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~-~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                      ...+..+.|+|.- ++|.+..+|.|-+..+. .+.+-++.-|...++ +++|.|||+.||.|-.||+|++-|+.+|..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4567889999998 99999999999998877 666777776666677 99999999999999999999999999986544


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEc
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFH  646 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~s  646 (701)
                      ..+..     ..   ..|.++.|+
T Consensus        99 ~~~~s-----~e---~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFS-----VE---TDISKGIWD  114 (665)
T ss_pred             ccccc-----cc---cchheeecc
Confidence            32111     11   566777775

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.036  Score=58.50  Aligned_cols=136  Identities=17%  Similarity=0.242  Sum_probs=95.3

Q ss_pred             EEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC---e-----EEEEeCCCcEEEEeCCCC-c-eEEeecCCC-
Q 005342          519 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---L-----FAFGFDDSSILVHCPCTK-K-TKAKLKGHQ-  586 (701)
Q Consensus       519 l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg---~-----l~~gs~dg~I~iwd~~~~-~-~~~~l~~h~-  586 (701)
                      +.++. ...++-.|++.|+.+....-+.. |+-+.+.|++   .     -+.|-.|..|.-||.+-. . .+..-.+|. 
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            33444 47899999999999988876555 7777788876   2     356788899999998743 2 222222332 


Q ss_pred             ---CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEE
Q 005342          587 ---NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY  663 (701)
Q Consensus       587 ---~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iw  663 (701)
                         ....|.+-..+| ++|.||.+|.|++||. .|... ...+.    +-.   .+|..|..+.||++|++..+..+.+.
T Consensus       428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~A-KTAlP----gLG---~~I~hVdvtadGKwil~Tc~tyLlLi  497 (644)
T KOG2395|consen  428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRA-KTALP----GLG---DAIKHVDVTADGKWILATCKTYLLLI  497 (644)
T ss_pred             ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhh-hhccc----ccC---CceeeEEeeccCcEEEEecccEEEEE
Confidence               234555544444 7899999999999998 44211 11222    333   88999999999999999888888888


Q ss_pred             EC
Q 005342          664 EA  665 (701)
Q Consensus       664 d~  665 (701)
                      ++
T Consensus       498 ~t  499 (644)
T KOG2395|consen  498 DT  499 (644)
T ss_pred             EE
Confidence            76

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.98  E-value=0.053  Score=45.61  Aligned_cols=93  Identities=17%  Similarity=0.174  Sum_probs=63.1

Q ss_pred             EcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc
Q 005342          553 LLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  630 (701)
Q Consensus       553 ~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~  630 (701)
                      |..||  .|++||+|..|++|+  ..+.+.++.. .+.|++++-... ..++.+-.+|+|-+|+-...    ...   +.
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R----lWR---iK   78 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR----LWR---IK   78 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce----eee---ec
Confidence            44566  899999999999997  4466777763 456788776655 56888999999999987541    112   22


Q ss_pred             CCCCCCCCCeEEEEEcC---CC-CEEEEE-ecCeEE
Q 005342          631 TGLVPETTIVNHIQFHP---DQ-IHLLSI-HEGQID  661 (701)
Q Consensus       631 ~~~~~~~~~v~~v~~sp---dg-~~l~sg-~Dg~I~  661 (701)
                      ..     ..++++.+..   || +-|++| .+|.|-
T Consensus        79 SK-----~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   79 SK-----NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cC-----CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            22     3456665543   33 357777 677664

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.97  E-value=0.5  Score=51.23  Aligned_cols=227  Identities=11%  Similarity=0.030  Sum_probs=115.4

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCC------
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLE------  414 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~------  414 (701)
                      +...++++.|+.+|+.+...         +.+.                    ....+.|.+|++.|+....+.      
T Consensus       147 ~e~~~l~v~Dl~tg~~l~d~---------i~~~--------------------~~~~~~W~~d~~~~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  147 SEWYTLRVFDLETGKFLPDG---------IENP--------------------KFSSVSWSDDGKGFFYTRFDEDQRTSD  197 (414)
T ss_dssp             SSEEEEEEEETTTTEEEEEE---------EEEE--------------------ESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred             CceEEEEEEECCCCcCcCCc---------cccc--------------------ccceEEEeCCCCEEEEEEeCccccccc
Confidence            34467999999998655431         1110                    022489999999877665333      


Q ss_pred             -----cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC-c-EEEEecCCCCccccccccceeeE
Q 005342          415 -----KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA-T-HKLWKWQSNKQSLEEENVNMESQ  487 (701)
Q Consensus       415 -----~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg-~-i~vwd~~~~~~~~g~~~~~~~i~  487 (701)
                           .|..|.+.+.....   .+.+...........+..++|+++++..+..+ . -.+|=+                 
T Consensus       198 ~~~~~~v~~~~~gt~~~~d---~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~-----------------  257 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQSED---ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLL-----------------  257 (414)
T ss_dssp             CGCCEEEEEEETTS-GGG----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEE-----------------
T ss_pred             CCCCcEEEEEECCCChHhC---eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEE-----------------
Confidence                 36777776321111   11111221122267889999999887655432 2 333322                 


Q ss_pred             EeeCCCC-----eEEeecccCCCCCCeEEEEecCC-EEEEEe----CCeEEEEeCCCCcE---EEEecCCCCC--eEEEE
Q 005342          488 LYQPSSK-----LVMTNDIAADPKDSISCFALRGS-HLFSAS----GGKISIFSLETFQT---LATFANPPPI--ATYFI  552 (701)
Q Consensus       488 ~~d~~~~-----~~~~~~~~~~~~~~v~~l~~s~~-~l~s~s----dg~I~iwd~~~~~~---~~~~~~~~~~--i~~l~  552 (701)
                        +...+     ....  +.....+....+...|. +++...    .+.|...++.+...   ...+..+...  +..+.
T Consensus       258 --d~~~~~~~~~~~~~--l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~  333 (414)
T PF02897_consen  258 --DLDDGGSPDAKPKL--LSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS  333 (414)
T ss_dssp             --ECCCTTTSS-SEEE--EEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred             --eccccCCCcCCcEE--EeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence              33332     1111  11122222333333344 443332    36788888877652   3244445553  45555


Q ss_pred             EcCCCeEEEEeCCC--cEEEEeCCCCceEEeecC-CCCCeEEEEEecCCCE-EEE-EeC--CCeEEEEECCCCee
Q 005342          553 LLPQDLFAFGFDDS--SILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNV-LVS-SGA--DAQLCVWDAVGWKK  620 (701)
Q Consensus       553 ~spdg~l~~gs~dg--~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~~-l~s-~s~--D~~I~vwd~~~g~~  620 (701)
                      ...+.+++....++  .|+++|+..+.....+.. -.+.|..+...++++. .++ .|.  -++++.||+.+++.
T Consensus       334 ~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  334 LFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            44333666666666  689999883434333332 3344566655566553 333 332  46899999999863

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.95  E-value=0.035  Score=61.09  Aligned_cols=105  Identities=11%  Similarity=0.048  Sum_probs=69.2

Q ss_pred             CCC-eEEEEeCCCcEEEEeCCC-----CceEEeecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeeee-----
Q 005342          555 PQD-LFAFGFDDSSILVHCPCT-----KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLC-----  622 (701)
Q Consensus       555 pdg-~l~~gs~dg~I~iwd~~~-----~~~~~~l~~h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~g~~~~-----  622 (701)
                      ++| +...  .++.|.+.|.++     .+.+..+.. ......++++|||+++++++ .+.+|.|.|+.+.+...     
T Consensus       286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             hCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            355 3333  356799999888     355555543 34568899999999877554 58999999998843200     


Q ss_pred             --eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          623 --SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       623 --~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                        .....++.-|     ..-...+|.++|....+- -|..|..||+.+
T Consensus       363 ~~~~vvaevevG-----lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPELG-----LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeeccC-----CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence              0111222223     334678899999744443 799999999975

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.92  E-value=0.52  Score=50.22  Aligned_cols=90  Identities=9%  Similarity=0.051  Sum_probs=52.3

Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee---------eeeeeccCCCCCCCCCeEEEEEcCC-CCEEEE
Q 005342          585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS---------KFLHSFQTGLVPETTIVNHIQFHPD-QIHLLS  654 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~---------~~l~~~~~~~~~~~~~v~~v~~spd-g~~l~s  654 (701)
                      ....+.+++.+|++++.|+...=|+|.++|+.++..+..         ..+......+. +...-....-.+. ..+|+.
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~-~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDR-DRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeeccccc-ccccccccCCCCcceEEEEE
Confidence            334688899999999988888889999999998643221         00110000000 0000000000001 123444


Q ss_pred             -E-ecCeEEEEECCCCceeeeee
Q 005342          655 -I-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       655 -g-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                       . .-|.|.||++++|..+..+.
T Consensus       385 yaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EeccCCeEEEEecCCCCEEEEEE
Confidence             4 78999999999999887664

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.89  E-value=0.45  Score=51.30  Aligned_cols=124  Identities=15%  Similarity=0.200  Sum_probs=73.1

Q ss_pred             CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC-CCCeEEEEEecCCCEE
Q 005342          524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVL  601 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~v~~spdg~~l  601 (701)
                      ++.+.+.+-...+.   +. ..+++..+++||+| ++|.-..+|.+.+.+..-.+....+... ......+.|.      
T Consensus       199 g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC------  268 (410)
T PF04841_consen  199 GETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC------  268 (410)
T ss_pred             CCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE------
Confidence            56666555432211   22 34689999999999 9999999999999886655555555432 2344555554      


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee
Q 005342          602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       602 ~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                         |.|..+.-|.  ..    ...+     |..   +  ..+.|.-++..++...-..++|..-.+.+.++.++.
T Consensus       269 ---G~dav~l~~~--~~----l~lv-----g~~---~--~~~~~~~~~~~~l~~E~DG~riit~~~~~~l~~Vp~  324 (410)
T PF04841_consen  269 ---GNDAVVLSWE--DE----LLLV-----GPD---G--DSISFWYDGPVILVSEIDGVRIITSTSHEFLQRVPD  324 (410)
T ss_pred             ---CCCcEEEEeC--CE----EEEE-----CCC---C--CceEEeccCceEEeccCCceEEEeCCceEEEEECCH
Confidence               4444444451  10    0111     110   1  124455555555566433489998877788887776

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.48  Score=50.70  Aligned_cols=193  Identities=11%  Similarity=0.108  Sum_probs=126.4

Q ss_pred             eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---CCcEEEEec
Q 005342          395 SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~  470 (701)
                      -..++.++++. ..++...++.|.+.|..    +..+.... +   -......++++|+++.+.++..   ++.+.+.  
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~----~~~~~~~~-~---vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvi--  145 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTA----TNTVLGSI-P---VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVI--  145 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCc----ccceeeEe-e---eccCCceEEECCCCCEEEEEecccCCceEEEE--
Confidence            34678888888 44555556899999966    33333311 1   1226678999999988887776   3555554  


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEE-E---ec
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLA-T---FA  542 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~-~---~~  542 (701)
                                         |..++.+... ...+. .+ ..++++  |+.++.+.  ++.|.+.|..+....+ .   ..
T Consensus       146 -------------------d~~t~~~~~~-~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~  203 (381)
T COG3391         146 -------------------DAATNKVTAT-IPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV  203 (381)
T ss_pred             -------------------eCCCCeEEEE-EecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccc
Confidence                               6666665544 32222 23 678888  77676665  7999999987665553 1   01


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECC
Q 005342          543 NPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAV  616 (701)
Q Consensus       543 ~~~~~i~~l~~spdg-~l~~gs~d---g~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~  616 (701)
                      ........+.++|+| .+.+....   +.+...|..++..... ...-......+..+|+|..+.+.. ..+.+.+-|..
T Consensus       204 ~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         204 GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence            122344789999999 44443333   5999999988877664 221111456789999999887764 44889999988


Q ss_pred             CCe
Q 005342          617 GWK  619 (701)
Q Consensus       617 ~g~  619 (701)
                      +..
T Consensus       284 ~~~  286 (381)
T COG3391         284 TDR  286 (381)
T ss_pred             CCc
Confidence            864

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.83  E-value=0.31  Score=50.78  Aligned_cols=197  Identities=14%  Similarity=0.171  Sum_probs=98.9

Q ss_pred             EEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-
Q 005342          448 IYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-  523 (701)
Q Consensus       448 ~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-  523 (701)
                      +|.+||+.|+.++. ||.-.+|-+                   |+.+++..+  +..+.........++  ++.++... 
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~l-------------------DL~t~~i~Q--LTdg~g~~~~g~~~s~~~~~~~Yv~~  100 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLL-------------------DLATGEITQ--LTDGPGDNTFGGFLSPDDRALYYVKN  100 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEE-------------------ETTT-EEEE-----SS-B-TTT-EE-TTSSEEEEEET
T ss_pred             CcCCCCCEEEEEeccCCCcceEEE-------------------EcccCEEEE--CccCCCCCccceEEecCCCeEEEEEC
Confidence            57899987776665 777777755                   778888665  322221222233344  66665554 


Q ss_pred             CCeEEEEeCCCCcEEEEecCCCCCeEEEEEc--CCCeEEEEe-----------------------CCCcEEEEeCCCCce
Q 005342          524 GGKISIFSLETFQTLATFANPPPIATYFILL--PQDLFAFGF-----------------------DDSSILVHCPCTKKT  578 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s--pdg~l~~gs-----------------------~dg~I~iwd~~~~~~  578 (701)
                      +..++-.|+++.+....+..+...+-...|.  .|+..++|.                       -.+.|.-.|+.+|+.
T Consensus       101 ~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~  180 (386)
T PF14583_consen  101 GRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER  180 (386)
T ss_dssp             TTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred             CCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence            6789999999988766666566655555554  334223222                       112466678888876


Q ss_pred             EEeecCCCCCeEEEEEec-CCCEEEEEeC---CC-eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342          579 KAKLKGHQNRITCLAYSL-SLNVLVSSGA---DA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  653 (701)
Q Consensus       579 ~~~l~~h~~~V~~v~~sp-dg~~l~s~s~---D~-~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~  653 (701)
                      ...+. -...+.-+.||| |...|+.|-+   |. .-|||-+.+... ...++..   ...  ...+..=-|.|||..+.
T Consensus       181 ~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~---~~~--~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  181 KVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHR---RME--GESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             EEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS------T--TEEEEEEEE-TTSS-EE
T ss_pred             eEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeec---CCC--CcccccccccCCCCEEE
Confidence            55554 456788899999 4556666543   22 135565543211 1123321   111  15566777999998876


Q ss_pred             E-E-----ecCeEEEEECCCCceee
Q 005342          654 S-I-----HEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       654 s-g-----~Dg~I~iwd~~~g~~~~  672 (701)
                      - +     .+..|.-+|+.+++...
T Consensus       254 y~~~~~~~~~~~i~~~d~~t~~~~~  278 (386)
T PF14583_consen  254 YDSYTPGGQDFWIAGYDPDTGERRR  278 (386)
T ss_dssp             EEEEETTT--EEEEEE-TTT--EEE
T ss_pred             EEeecCCCCceEEEeeCCCCCCceE
Confidence            5 3     24467788898886543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.75  E-value=0.83  Score=46.90  Aligned_cols=119  Identities=13%  Similarity=0.036  Sum_probs=72.0

Q ss_pred             CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC--C----ce-EEeecCCCCCeEEEEEe
Q 005342          525 GKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT--K----KT-KAKLKGHQNRITCLAYS  595 (701)
Q Consensus       525 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~--~----~~-~~~l~~h~~~V~~v~~s  595 (701)
                      |.++.+|. .+..++.+..+-..-+.++||||+  ++++=+..+.|+-|++..  +    +. ...+..+.+..-.++..
T Consensus       143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD  221 (307)
T COG3386         143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD  221 (307)
T ss_pred             ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence            44555554 455666655544455899999999  455555568898887752  2    11 11122234556667788


Q ss_pred             cCCCEEEEEeCCC-eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc-CCCCEEEE
Q 005342          596 LSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-PDQIHLLS  654 (701)
Q Consensus       596 pdg~~l~s~s~D~-~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s-pdg~~l~s  654 (701)
                      .+|.+-+++-.+| .|.+|+.. |+++....+.   .      ..+++++|- |+.+.|.+
T Consensus       222 adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP---~------~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         222 ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP---V------KRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             CCCCEEEecccCCceEEEECCC-CcEEEEEECC---C------CCCccceEeCCCcCEEEE
Confidence            8888765444444 99999999 6544322222   1      446777774 56555554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.69  E-value=0.085  Score=44.43  Aligned_cols=97  Identities=16%  Similarity=0.230  Sum_probs=66.5

Q ss_pred             eEEEEec------CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEe
Q 005342          509 ISCFALR------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK  581 (701)
Q Consensus       509 v~~l~~s------~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~  581 (701)
                      |+++++.      .+.|++|+ |..|++|+-.  ..+..+. ....+++++-...+.++.+..+|+|-+|+....  +-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R--lWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR--LWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcce--eee
Confidence            4555555      25688888 9999999853  5667776 566788887777678899999999999985332  333


Q ss_pred             ecCCCCCeEEEEEec-C--C-CEEEEEeCCCeEE
Q 005342          582 LKGHQNRITCLAYSL-S--L-NVLVSSGADAQLC  611 (701)
Q Consensus       582 l~~h~~~V~~v~~sp-d--g-~~l~s~s~D~~I~  611 (701)
                      .+.. ..++++++.. +  | +-|++|=.+|.|-
T Consensus        77 iKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3322 3366665543 3  2 2678888888764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.62  E-value=0.39  Score=53.26  Aligned_cols=154  Identities=14%  Similarity=0.090  Sum_probs=92.6

Q ss_pred             CEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC-----e-EEEEEcCCCeEEEEe---------CCCcEEEEeCCCCceEE
Q 005342          517 SHLFSAS-GGKISIFSLETFQTLATFANPPPI-----A-TYFILLPQDLFAFGF---------DDSSILVHCPCTKKTKA  580 (701)
Q Consensus       517 ~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~-----i-~~l~~spdg~l~~gs---------~dg~I~iwd~~~~~~~~  580 (701)
                      ..++.++ ++.|+-+|.++|+.+..+......     + .+..+.. +.++.++         .+|.++.+|..+|+.+-
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            7778887 999999999999999887643321     1 1222222 3444554         36789999999998876


Q ss_pred             eecCCCC--------------------Ce-EEEEEecCCCEEEEEeCCC------------------eEEEEECCCCeee
Q 005342          581 KLKGHQN--------------------RI-TCLAYSLSLNVLVSSGADA------------------QLCVWDAVGWKKL  621 (701)
Q Consensus       581 ~l~~h~~--------------------~V-~~v~~spdg~~l~s~s~D~------------------~I~vwd~~~g~~~  621 (701)
                      .+.....                    .+ .+.++.+.+..++.++.++                  .|.-.|.++|+..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            6543211                    01 1234455556677776554                  7999999999755


Q ss_pred             eeeeeeecc----CCCCCCCCC-eEEEEEcCCCC---EEEEE-ecCeEEEEECCCCceeeeee
Q 005342          622 CSKFLHSFQ----TGLVPETTI-VNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       622 ~~~~l~~~~----~~~~~~~~~-v~~v~~spdg~---~l~sg-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      -........    .+..   .+ +..+. .-+|.   .++++ .+|.+...|..+|+.+-..+
T Consensus       270 W~~~~~~~~~~~~~~~s---~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         270 WFYQTTPHDLWDYDGPN---QPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             EEeeCCCCCCcccccCC---CCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            332221000    0110   11 11111 11333   45555 78999999999999877654

The alignment model contains an 8-bladed beta-propeller.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.62  E-value=0.045  Score=61.45  Aligned_cols=149  Identities=8%  Similarity=-0.053  Sum_probs=86.9

Q ss_pred             CCeEEEEec--CCEEEEEe-------C--CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC---------
Q 005342          507 DSISCFALR--GSHLFSAS-------G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---------  565 (701)
Q Consensus       507 ~~v~~l~~s--~~~l~s~s-------d--g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d---------  565 (701)
                      ..+.+.+++  |+.++...       |  ..|.+++. .+.......+  ...+.-.|+||| .+++.+..         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            356777788  66655432       3  35666675 3333222232  247889999998 66665432         


Q ss_pred             ---CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE---EECCCCeeeeeeeeeeccCCCCCCCCC
Q 005342          566 ---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV---WDAVGWKKLCSKFLHSFQTGLVPETTI  639 (701)
Q Consensus       566 ---g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v---wd~~~g~~~~~~~l~~~~~~~~~~~~~  639 (701)
                         +.+++.++..++...   ...+.|..+.|||||..++... +++|++   -....|+.....+.. +..+-.   ..
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~-l~~~l~---~~  498 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE-VGPGLG---DT  498 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE-eecccC---Cc
Confidence               234444554443322   2345799999999999888766 478888   555566422212222 333332   34


Q ss_pred             eEEEEEcCCCCEEEEEec--CeEEEEECC
Q 005342          640 VNHIQFHPDQIHLLSIHE--GQIDVYEAP  666 (701)
Q Consensus       640 v~~v~~spdg~~l~sg~D--g~I~iwd~~  666 (701)
                      +.++.|.+++.+++...+  ..+...++.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD  527 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD  527 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecC
Confidence            688999999996644333  334444443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.61  E-value=0.84  Score=45.10  Aligned_cols=190  Identities=13%  Similarity=0.151  Sum_probs=112.4

Q ss_pred             CCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEecCCEE
Q 005342          441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALRGSHL  519 (701)
Q Consensus       441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s~~~l  519 (701)
                      ..-...+.|..+|..+-+.+.-|.-.+-                   .+|+.+|+.... .+.  ....--.++..++.|
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~-------------------~~d~~tg~~~~~~~l~--~~~FgEGit~~~d~l  102 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLR-------------------KVDLETGKVLQSVPLP--PRYFGEGITILGDKL  102 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEE-------------------EEETTTSSEEEEEE-T--TT--EEEEEEETTEE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEE-------------------EEECCCCcEEEEEECC--ccccceeEEEECCEE
Confidence            3456788888888877777776643332                   236677775432 121  222333444555555


Q ss_pred             EEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-----CCeEE
Q 005342          520 FSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRITC  591 (701)
Q Consensus       520 ~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----~~V~~  591 (701)
                      .--+  ++...+||..+.+.+.++.- ...-..++  .|| .++.+.....++.+|..+.+..+.+....     ..++-
T Consensus       103 ~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE  179 (264)
T PF05096_consen  103 YQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE  179 (264)
T ss_dssp             EEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred             EEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence            5544  89999999999999988863 34556666  456 66666667799999999888777665422     24566


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC------CCCCCCCCeEEEEEcCCCC-EEEEE
Q 005342          592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT------GLVPETTIVNHIQFHPDQI-HLLSI  655 (701)
Q Consensus       592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~------~~~~~~~~v~~v~~spdg~-~l~sg  655 (701)
                      +.|- +|...|-.=....|..-|..+|+....-.+..+..      .+.+...-.+.|+|.|.+. ++++|
T Consensus       180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            7775 67666655566788889999997554333332211      1111125689999998755 45567

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00320 WD40 WD40 repeats

Probab=96.53  E-value=0.0071  Score=39.40  Aligned_cols=38  Identities=21%  Similarity=0.150  Sum_probs=33.0

Q ss_pred             CcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 005342          535 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC  572 (701)
Q Consensus       535 ~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd  572 (701)
                      ++....+..|...+.++.|++++ .+++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566677788899999999999 999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.52  E-value=1  Score=45.00  Aligned_cols=252  Identities=15%  Similarity=0.195  Sum_probs=128.4

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCC--CceeEeecCCC---CCCCCEEEEEEecCCC------------EEE
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP--SECRTLLLPDN---SFGGRVVRLIYSHSGD------------FLV  457 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~--~~~~~l~~~~~---~~~~~v~~l~~spdg~------------~l~  457 (701)
                      -|.++++|.+..-++...-+...+||.......  .+...+++|..   ......+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            689999999999999888899999998621111  12233344321   1234577777775433            357


Q ss_pred             EEECCCcEEEEecCCCCccccccccceeeEEeeCC---CCeEEeecccCCCCCCeE-EEEec----CCEEEEEe--CCeE
Q 005342          458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS---SKLVMTNDIAADPKDSIS-CFALR----GSHLFSAS--GGKI  527 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~~v~-~l~~s----~~~l~s~s--dg~I  527 (701)
                      .++.||+|.-|....                 ++.   ...++   +.......|+ .+++-    +.+|..+.  .++|
T Consensus       105 f~tEdGTisaW~p~v-----------------~~t~~~~~~~~---~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~I  164 (336)
T TIGR03118       105 FVTEDGTLSGWAPAL-----------------GTTRMTRAEIV---VDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRI  164 (336)
T ss_pred             EEeCCceEEeecCcC-----------------CcccccccEEE---EccCCCcceeeeeEEeecCCCceEEEeccCCCce
Confidence            778889999885421                 111   11111   1111122222 23333    56777776  6888


Q ss_pred             EEEeCCCCcEEEEecC-CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC
Q 005342          528 SIFSLETFQTLATFAN-PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA  606 (701)
Q Consensus       528 ~iwd~~~~~~~~~~~~-~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~  606 (701)
                      .++|-. ...+.. .+ ...+-.-.-+.|-+....   .+.+++-=..                   -.++++.=+.|..
T Consensus       165 DVFd~~-f~~~~~-~g~F~DP~iPagyAPFnIqni---g~~lyVtYA~-------------------qd~~~~d~v~G~G  220 (336)
T TIGR03118       165 DVFKGS-FRPPPL-PGSFIDPALPAGYAPFNVQNL---GGTLYVTYAQ-------------------QDADRNDEVAGAG  220 (336)
T ss_pred             EEecCc-cccccC-CCCccCCCCCCCCCCcceEEE---CCeEEEEEEe-------------------cCCcccccccCCC
Confidence            888753 222211 10 001100011222211111   1223321100                   0122222233444


Q ss_pred             CCeEEEEECCCCeeeeeeeeeec-cCCCCCCCCCeEEEEEcCC------CCEEEEE-ecCeEEEEECCCCceeeeeee--
Q 005342          607 DAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPD------QIHLLSI-HEGQIDVYEAPTLNHTSQVLL--  676 (701)
Q Consensus       607 D~~I~vwd~~~g~~~~~~~l~~~-~~~~~~~~~~v~~v~~spd------g~~l~sg-~Dg~I~iwd~~~g~~~~~l~~--  676 (701)
                      -|.|-+||....      .++.+ ..+..   ..-+.|+..|-      |.+|+-- .||+|..+|..+|+.+..+..  
T Consensus       221 ~G~VdvFd~~G~------l~~r~as~g~L---NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~  291 (336)
T TIGR03118       221 LGYVNVFTLNGQ------LLRRVASSGRL---NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD  291 (336)
T ss_pred             cceEEEEcCCCc------EEEEeccCCcc---cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence            456666666542      11111 11222   44566766553      4555543 699999999999998877765  


Q ss_pred             --------eeEEEEEeeEEeeeecceEEEEeC
Q 005342          677 --------ISHIMFVQIVVKFHSFKFFYVAVG  700 (701)
Q Consensus       677 --------i~~~~fs~~~~~f~~~~~~~~~~~  700 (701)
                              ..+++|-..... ......|+++|
T Consensus       292 G~pi~i~GLWgL~fGng~~~-~~~ntLyFaAG  322 (336)
T TIGR03118       292 NHPVKVDGLWSLTFGNGVSG-GSANYLYFTAG  322 (336)
T ss_pred             CCeEEecCeEEeeeCCCcCC-CCcceEEEEeC
Confidence                    567777543322 23356777776

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.49  E-value=0.0056  Score=67.43  Aligned_cols=99  Identities=23%  Similarity=0.307  Sum_probs=78.0

Q ss_pred             CCEEEEEe-----CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCe
Q 005342          516 GSHLFSAS-----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI  589 (701)
Q Consensus       516 ~~~l~s~s-----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V  589 (701)
                      ..++++++     .|.|.||- ++|++.+... .+-.+++++|+|.. .++.|-+-|.+.+|...+.+.-.....|..+|
T Consensus        27 ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i  104 (1416)
T KOG3617|consen   27 EPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPI  104 (1416)
T ss_pred             CceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCc
Confidence            44555443     47888874 3666544333 23346789999999 99999999999999987776655556699999


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342          590 TCLAYSLSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       590 ~~v~~spdg~~l~s~s~D~~I~vwd~~  616 (701)
                      ..+.|||+|..++|+..-|.+.+|...
T Consensus       105 ~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  105 QGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeEEecCCCCeEEEcCCCceeEEEEee
Confidence            999999999999999999999999876

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.35  E-value=0.76  Score=45.21  Aligned_cols=231  Identities=8%  Similarity=0.011  Sum_probs=120.5

Q ss_pred             eEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCC-----CcEEEE
Q 005342          345 TISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSL-----EKSVNL  419 (701)
Q Consensus       345 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d-----~~v~iw  419 (701)
                      ...++|..+.+.+.++          ...           .+..+.||     =.|||||.+|...-+|     |.|-+|
T Consensus        92 f~~vfD~~~~~~pv~~----------~s~-----------~~RHfyGH-----Gvfs~dG~~LYATEndfd~~rGViGvY  145 (366)
T COG3490          92 FAMVFDPNGAQEPVTL----------VSQ-----------EGRHFYGH-----GVFSPDGRLLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             eEEEECCCCCcCcEEE----------ecc-----------cCceeecc-----cccCCCCcEEEeecCCCCCCCceEEEE
Confidence            4566788877776663          111           22334455     3599999999987544     678899


Q ss_pred             eccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE-ecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342          420 KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW-KWQSNKQSLEEENVNMESQLYQPSSKLVMT  498 (701)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw-d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~  498 (701)
                      |...     ...++- .+..|.-....+.|.+||+.++.+..  -|..- |....+.  .-....-+..+.|..+|.++.
T Consensus       146 d~r~-----~fqrvg-E~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~l--NldsMePSlvlld~atG~lie  215 (366)
T COG3490         146 DARE-----GFQRVG-EFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTEL--NLDSMEPSLVLLDAATGNLIE  215 (366)
T ss_pred             eccc-----ccceec-ccccCCcCcceeEEecCCcEEEEeCC--ceecccccCcccc--chhhcCccEEEEeccccchhh
Confidence            9862     111211 23345666678899999998776543  33332 2111100  000001124455667777654


Q ss_pred             ecccC--CCCCCeEEEEec-CCEEEEEe--CCeE-----EEEeCCCCcEEEEecCC-------CCCeEEEEEcCCC-eEE
Q 005342          499 NDIAA--DPKDSISCFALR-GSHLFSAS--GGKI-----SIFSLETFQTLATFANP-------PPIATYFILLPQD-LFA  560 (701)
Q Consensus       499 ~~~~~--~~~~~v~~l~~s-~~~l~s~s--dg~I-----~iwd~~~~~~~~~~~~~-------~~~i~~l~~spdg-~l~  560 (701)
                      +...+  .+.-.|..++.. +..+..|+  .|.-     -+=-...++.+.-+...       ...|-+++.+.+. +++
T Consensus       216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~  295 (366)
T COG3490         216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA  295 (366)
T ss_pred             hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence            32111  233445566665 33333332  2210     00011123333322211       2356788888766 666


Q ss_pred             EEeCCC-cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342          561 FGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       561 ~gs~dg-~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~  615 (701)
                      ..+-.| ...+||..+|.++..-.--  .+..+  -+...=++..|.+|.|..+.-
T Consensus       296 lTSP~GN~~vi~da~tG~vv~~a~l~--daaGv--a~~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         296 LTSPRGNRAVIWDAATGAVVSEAALP--DAAGV--AAAKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             EecCCCCeEEEEEcCCCcEEeccccc--ccccc--eeccCceEEecCCceEEeccc
Confidence            666555 6779999999887643211  11222  233334555667788887743

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.33  E-value=0.65  Score=44.30  Aligned_cols=136  Identities=9%  Similarity=0.005  Sum_probs=79.8

Q ss_pred             CCeEEEEEcCCC-eEEEEeCC----------CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEE-EEEeCCCeEEEE
Q 005342          546 PIATYFILLPQD-LFAFGFDD----------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVW  613 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~d----------g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l-~s~s~D~~I~vw  613 (701)
                      .....-..+|+| + ..|...          |.++.|-.  +..+..+.+.-+--+.++|+.+.+.+ +.-+.+-+|.-|
T Consensus       109 nR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             cccccCccCCCCce-eeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            344566789999 6 444322          23333322  11222222222344678999877744 456677788778


Q ss_pred             E--CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEe
Q 005342          614 D--AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQ  684 (701)
Q Consensus       614 d--~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~  684 (701)
                      |  ..+|.....+.+-.+..........--.+++..+|.+.++. ..++|.-.|..+|+.+..+.-    |+++||-.
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            7  77775433333322322111000112334456678877776 788999999999999998876    99999964

>PHA02713 hypothetical protein; Provisional

Probab=96.16  E-value=1.1  Score=50.50  Aligned_cols=144  Identities=8%  Similarity=0.008  Sum_probs=72.6

Q ss_pred             CCEEEEEe-CC-----eEEEEeCCCCcEEE--EecCCCCCeEEEEEcCCC-eEEEEeCC---------------------
Q 005342          516 GSHLFSAS-GG-----KISIFSLETFQTLA--TFANPPPIATYFILLPQD-LFAFGFDD---------------------  565 (701)
Q Consensus       516 ~~~l~s~s-dg-----~I~iwd~~~~~~~~--~~~~~~~~i~~l~~spdg-~l~~gs~d---------------------  565 (701)
                      |...+.|+ ++     .+..||..+.+-..  .+.........+  .-+| ..+.|+.+                     
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~  429 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH  429 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCccccccccccccccccccccc
Confidence            66666666 43     48889987664221  222111111222  2356 66666654                     


Q ss_pred             --CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC------CeEEEEECCC-CeeeeeeeeeeccCCCCCC
Q 005342          566 --SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVG-WKKLCSKFLHSFQTGLVPE  636 (701)
Q Consensus       566 --g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D------~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~  636 (701)
                        ..+..||..+.+....-.-........+..-+|+..+.||.+      ..+..||..+ .+-....+   ++...   
T Consensus       430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~---m~~~r---  503 (557)
T PHA02713        430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT---TESRL---  503 (557)
T ss_pred             ccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc---cCccc---
Confidence              247788988765432211111111111222356666667654      2467899887 43222222   22111   


Q ss_pred             CCCeEEEEEcCCCCEEEEE-ecC--eEEEEECCCCce
Q 005342          637 TTIVNHIQFHPDQIHLLSI-HEG--QIDVYEAPTLNH  670 (701)
Q Consensus       637 ~~~v~~v~~spdg~~l~sg-~Dg--~I~iwd~~~g~~  670 (701)
                       .....+.+  +|+..++| .|+  ++..||+.+.+-
T Consensus       504 -~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        504 -SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             -ccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence             22222222  56766675 566  688888877764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.09  E-value=0.37  Score=48.95  Aligned_cols=146  Identities=12%  Similarity=0.098  Sum_probs=86.2

Q ss_pred             CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee-----------
Q 005342          516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-----------  582 (701)
Q Consensus       516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l-----------  582 (701)
                      ++.|+.|+ +| +.+++.........+. +...|..+...|+- .+++- .|+.++++++........-           
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccc
Confidence            77888999 66 9999993333222222 23349999999877 44333 3499999998764433311           


Q ss_pred             ---cCCCCCeEEEE--EecCC-CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe
Q 005342          583 ---KGHQNRITCLA--YSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH  656 (701)
Q Consensus       583 ---~~h~~~V~~v~--~spdg-~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~  656 (701)
                         ......+...+  -.+.+ .+|+.+ ...+|.+|............++++.-.     ..+.+++|.  ++.++.|.
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-----~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-----DPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-----CCcEEEEEe--CCEEEEEe
Confidence               01223444444  11233 345444 455898888876311100122212111     678899998  66788886


Q ss_pred             cCeEEEEECCCCceee
Q 005342          657 EGQIDVYEAPTLNHTS  672 (701)
Q Consensus       657 Dg~I~iwd~~~g~~~~  672 (701)
                      .+...+.|+.++....
T Consensus       156 ~~~f~~idl~~~~~~~  171 (275)
T PF00780_consen  156 SKGFYLIDLNTGSPSE  171 (275)
T ss_pred             CCceEEEecCCCCceE
Confidence            6678889998776543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.08  E-value=0.081  Score=59.48  Aligned_cols=140  Identities=14%  Similarity=0.060  Sum_probs=76.2

Q ss_pred             CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe------CCC--cEEEEeCCCCceEEeecCCCCCeEEEEE
Q 005342          524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF------DDS--SILVHCPCTKKTKAKLKGHQNRITCLAY  594 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs------~dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~  594 (701)
                      +|.+.-.+-..-..+.-..+....+.+.+++||| .++...      .|.  .|++++. .+.......+.  ..++-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceE
Confidence            6666554432222222222233467899999999 665544      233  5666665 33333333333  3778899


Q ss_pred             ecCCCEEEEEeCCC-eEEEEECCCCeeeeeeeeeeccCCCC--CCCCCeEEEEEcCCCCEEEEEecCeEEE---EECCCC
Q 005342          595 SLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPDQIHLLSIHEGQIDV---YEAPTL  668 (701)
Q Consensus       595 spdg~~l~s~s~D~-~I~vwd~~~g~~~~~~~l~~~~~~~~--~~~~~v~~v~~spdg~~l~sg~Dg~I~i---wd~~~g  668 (701)
                      +|||..+++.++.. .+++.+-.....+....   +..+..  .....|..+.|||||..++.-.++.|++   -....|
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~---vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G  481 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTP---VDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDG  481 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEe---ccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCC
Confidence            99999888776432 23333322111111111   111100  0016799999999999998865677777   444556


Q ss_pred             c
Q 005342          669 N  669 (701)
Q Consensus       669 ~  669 (701)
                      +
T Consensus       482 ~  482 (591)
T PRK13616        482 Q  482 (591)
T ss_pred             c
Confidence            4

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.99  E-value=0.23  Score=51.76  Aligned_cols=131  Identities=13%  Similarity=0.036  Sum_probs=80.0

Q ss_pred             CeEEEEeCCCC-----c--EEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCc-eEEeecC-CCCCeEEEEEe
Q 005342          525 GKISIFSLETF-----Q--TLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK-TKAKLKG-HQNRITCLAYS  595 (701)
Q Consensus       525 g~I~iwd~~~~-----~--~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~-~~~~l~~-h~~~V~~v~~s  595 (701)
                      |.|.++++...     +  .+.... ..++|++++-- +|.++++. ++.|++|++...+ ....-.. ....+.++.. 
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~-  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV-  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred             cEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence            78999999874     2  222222 46788888876 33544443 4789999998877 4443221 2224555544 


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       596 pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                       .+++++.|.....+.++....... ....+. -. ...   ..++++.|-+|++.++++ .+|.+.++...
T Consensus       138 -~~~~I~vgD~~~sv~~~~~~~~~~-~l~~va-~d-~~~---~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  138 -FKNYILVGDAMKSVSLLRYDEENN-KLILVA-RD-YQP---RWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -ETTEEEEEESSSSEEEEEEETTTE--EEEEE-EE-SS----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             -cccEEEEEEcccCEEEEEEEccCC-EEEEEE-ec-CCC---ccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence             466999999888888775543111 112222 11 111   678999998777777776 68999998875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.90  E-value=0.93  Score=51.05  Aligned_cols=229  Identities=13%  Similarity=0.093  Sum_probs=110.2

Q ss_pred             CCCeEEEEcCC------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-CcEEEEecCCCCc
Q 005342          403 DADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQSNKQ  475 (701)
Q Consensus       403 dg~~l~s~s~d------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g~i~vwd~~~~~~  475 (701)
                      .+..++.|+.+      ..+..+|..    .+....+. +.. ....-.+++. -+|...++||.| |.-.+=       
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~----~~~w~~~a-~m~-~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~-------  349 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPK----TNEWSSLA-PMP-SPRCRVGVAV-LNGKLYVVGGYDSGSDRLS-------  349 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCC----cCcEeecC-CCC-cccccccEEE-ECCEEEEEccccCCCcccc-------
Confidence            34566667665      356677776    44333322 111 1222333333 345667778777 322211       


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccC--CCCCCeEEEEec-CCEEEEEe-CC-----eEEEEeCCCCcEEEEecCCCC
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAA--DPKDSISCFALR-GSHLFSAS-GG-----KISIFSLETFQTLATFANPPP  546 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~v~~l~~s-~~~l~s~s-dg-----~I~iwd~~~~~~~~~~~~~~~  546 (701)
                               ++..||+.+++-..  +.+  ...... .++.- |...++|+ ||     ++-.||..+.+--..-. ...
T Consensus       350 ---------~ve~YD~~~~~W~~--~a~M~~~R~~~-~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~  416 (571)
T KOG4441|consen  350 ---------SVERYDPRTNQWTP--VAPMNTKRSDF-GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLT  416 (571)
T ss_pred             ---------eEEEecCCCCceec--cCCccCccccc-eeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCc
Confidence                     12244666665221  111  111111 22222 66777777 64     57788877654211111 111


Q ss_pred             CeEEE-EEcCCC-eEEEEeCCC------cEEEEeCCCCceEEe--ecCCCCCeEEEEEecCCCEEEEEeCCC-----eEE
Q 005342          547 IATYF-ILLPQD-LFAFGFDDS------SILVHCPCTKKTKAK--LKGHQNRITCLAYSLSLNVLVSSGADA-----QLC  611 (701)
Q Consensus       547 ~i~~l-~~spdg-~l~~gs~dg------~I~iwd~~~~~~~~~--l~~h~~~V~~v~~spdg~~l~s~s~D~-----~I~  611 (701)
                      ..... ...-+| ..++|+.++      ++..||..+++....  +..-..... ++ .-++...+.||.|+     +|.
T Consensus       417 ~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE  494 (571)
T KOG4441|consen  417 RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVE  494 (571)
T ss_pred             ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEE
Confidence            22222 223356 777777665      578899888755332  211111111 22 23677777787776     378


Q ss_pred             EEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC-CCCEEEEE-ecC-----eEEEEECCCCce
Q 005342          612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-HEG-----QIDVYEAPTLNH  670 (701)
Q Consensus       612 vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp-dg~~l~sg-~Dg-----~I~iwd~~~g~~  670 (701)
                      .||..+.+-.....+.          .+...+.... +++..++| .||     +|..||..+.+-
T Consensus       495 ~ydp~~~~W~~v~~m~----------~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  495 RYDPETNQWTMVAPMT----------SPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             EEcCCCCceeEcccCc----------cccccccEEEECCEEEEEecccCccccceeEEcCCCCCce
Confidence            8888885422211111          1112222222 34444554 554     578888877654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.73  E-value=0.042  Score=62.71  Aligned_cols=108  Identities=17%  Similarity=0.158  Sum_probs=70.1

Q ss_pred             EEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 005342          549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL  626 (701)
Q Consensus       549 ~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l  626 (701)
                      ..++..-.+ .++.|+..|.+-..|+...-. ...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++...  .+
T Consensus        91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~--~i  168 (1206)
T KOG2079|consen   91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK--VI  168 (1206)
T ss_pred             ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee--ee
Confidence            333333345 899999999999988765311 11111134699999999999999999999999999999975432  22


Q ss_pred             eeccCCCCCCCCCeEEEEEcCCCCEEEEEe-cCeEEEEE
Q 005342          627 HSFQTGLVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYE  664 (701)
Q Consensus       627 ~~~~~~~~~~~~~v~~v~~spdg~~l~sg~-Dg~I~iwd  664 (701)
                      .   .+..+ ...|..+.+..++..+++++ .|.  +|.
T Consensus       169 ~---e~~ap-~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  169 T---EHGAP-VTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             e---ecCCc-cceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            2   12111 14455555666666677764 443  454

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.55  E-value=0.047  Score=62.40  Aligned_cols=101  Identities=14%  Similarity=0.137  Sum_probs=73.3

Q ss_pred             EecCCEEEEEe-CCeEEEEeCCCCc-EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCe
Q 005342          513 ALRGSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI  589 (701)
Q Consensus       513 ~~s~~~l~s~s-dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V  589 (701)
                      +.-+..++.|+ .|.+-..|....- ....=....++|++++|+.+| .++.|-.+|.|.+||+..++.++.+..|..+.
T Consensus        96 a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   96 AIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence            33366777887 6888888875431 112212236789999999999 99999999999999999999999888776665


Q ss_pred             EEE---EEecCCCEEEEEeCCCeEEEEEC
Q 005342          590 TCL---AYSLSLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       590 ~~v---~~spdg~~l~s~s~D~~I~vwd~  615 (701)
                      +.+   .+..++..+.++...|.  +|..
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            555   34445666777777775  5543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.49  E-value=1.9  Score=45.53  Aligned_cols=129  Identities=18%  Similarity=0.056  Sum_probs=62.1

Q ss_pred             CCeEEEEeCCCCcEEEEecCCCCC--eEEEEEc--CCC--eEEEEeCCCcEEEEeC-CCCce----EEeec-----C---
Q 005342          524 GGKISIFSLETFQTLATFANPPPI--ATYFILL--PQD--LFAFGFDDSSILVHCP-CTKKT----KAKLK-----G---  584 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~~~~--i~~l~~s--pdg--~l~~gs~dg~I~iwd~-~~~~~----~~~l~-----~---  584 (701)
                      ..++++||+.+.+.++++.-....  ...+.|.  |+.  -++.+.-.++|..|-. ..++.    +-.+.     +   
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            468999999999999998754332  3445554  444  2333334556666544 33321    11111     1   


Q ss_pred             ---------CCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeeeeeeeeeeccCCCC------------CCCCCeEE
Q 005342          585 ---------HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLV------------PETTIVNH  642 (701)
Q Consensus       585 ---------h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~g~~~~~~~l~~~~~~~~------------~~~~~v~~  642 (701)
                               -..-|+.+..|.|.++|..+. .+|.|+.||+..-..  .+...++.-|..            .-.+...-
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~--Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM  378 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN--PKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM  378 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS---EEEEEEE-BTTTT-B--TTS------S----
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC--CcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence                     124579999999999887555 589999999987321  111111111110            00133467


Q ss_pred             EEEcCCCCEEEE
Q 005342          643 IQFHPDQIHLLS  654 (701)
Q Consensus       643 v~~spdg~~l~s  654 (701)
                      +..|-||+.|..
T Consensus       379 vqlS~DGkRlYv  390 (461)
T PF05694_consen  379 VQLSLDGKRLYV  390 (461)
T ss_dssp             EEE-TTSSEEEE
T ss_pred             EEEccCCeEEEE
Confidence            889999998875

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.49  E-value=0.046  Score=51.82  Aligned_cols=102  Identities=15%  Similarity=0.058  Sum_probs=68.8

Q ss_pred             CCEEEEEe-CCeEEEEeCCCC-cEEEEecCCCCCe-EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-CCeE
Q 005342          516 GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIA-TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRIT  590 (701)
Q Consensus       516 ~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-~~V~  590 (701)
                      +..+++|+ +|.|.+|+.... .....+......| +.+....++ +..++..||.|+.|++.-++.+...-+|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            56677777 999999987521 1111122122233 444444555 88999999999999998888877666676 4555


Q ss_pred             EEEEecCCCEEEEE--eCCCeEEEEECCC
Q 005342          591 CLAYSLSLNVLVSS--GADAQLCVWDAVG  617 (701)
Q Consensus       591 ~v~~spdg~~l~s~--s~D~~I~vwd~~~  617 (701)
                      ....+..+.+++.+  |.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            55556666677766  7777777777765

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.43  E-value=3.6  Score=42.05  Aligned_cols=138  Identities=11%  Similarity=0.049  Sum_probs=71.5

Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      ......+..+..++|| ++++++......-||--...-...-+.-...|.++.|+|++.+.+. ...|.|+.=+......
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGE  219 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCcc
Confidence            3445678889999999 8888766555567774432222222334578999999999886553 4888888887322111


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee-------eeEEEEEee
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL-------ISHIMFVQI  685 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~-------i~~~~fs~~  685 (701)
                      .-.+.+..+...    ...+..++|.+++...++|..|++ +.....|+.-+.-+.       .+.+.|.+.
T Consensus       220 ~w~~~~~~~~~~----~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  220 TWSEPIIPIKTN----GYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP  286 (302)
T ss_dssp             EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred             ccccccCCcccC----ceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence            111111101111    145899999999999888888865 455566665444432       566666543

>PRK10115 protease 2; Provisional

Probab=95.43  E-value=7  Score=45.31  Aligned_cols=229  Identities=7%  Similarity=-0.014  Sum_probs=113.2

Q ss_pred             eEEEEEcCCCCeEEEEcCC-----CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC------
Q 005342          395 SRESTSLPDADSAVCAKSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA------  463 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d-----~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg------  463 (701)
                      +..+.|+|||++|+.+...     ..+++-|+.    ++....-.+     ...-..++|++|++.|+....+.      
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~----tg~~l~~~i-----~~~~~~~~w~~D~~~~~y~~~~~~~~~~~  199 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE----TGNWYPELL-----DNVEPSFVWANDSWTFYYVRKHPVTLLPY  199 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECC----CCCCCCccc-----cCcceEEEEeeCCCEEEEEEecCCCCCCC
Confidence            7788999999999876432     346677775    443111011     11115699999999777766532      


Q ss_pred             cEEEEecCCCCccccccccceeeEEeeCCCC----eEEeecccCCCCCCeE-EEEec--CCEEEEEe----CCeEEEEeC
Q 005342          464 THKLWKWQSNKQSLEEENVNMESQLYQPSSK----LVMTNDIAADPKDSIS-CFALR--GSHLFSAS----GGKISIFSL  532 (701)
Q Consensus       464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~v~-~l~~s--~~~l~s~s----dg~I~iwd~  532 (701)
                      .+..+                     +..++    .++.    ........ ....+  +++++..+    ++.+.+++.
T Consensus       200 ~v~~h---------------------~lgt~~~~d~lv~----~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        200 QVWRH---------------------TIGTPASQDELVY----EEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EEEEE---------------------ECCCChhHCeEEE----eeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            33333                     33333    2331    11122222 22223  56554433    368999994


Q ss_pred             C--CCcEEEEecCCCCCeEEEEEcCCC--eEEEEeC--CCcEEEEeCCC-CceEEeecCC-C-CCeEEEEEecCCCEEEE
Q 005342          533 E--TFQTLATFANPPPIATYFILLPQD--LFAFGFD--DSSILVHCPCT-KKTKAKLKGH-Q-NRITCLAYSLSLNVLVS  603 (701)
Q Consensus       533 ~--~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~--dg~I~iwd~~~-~~~~~~l~~h-~-~~V~~v~~spdg~~l~s  603 (701)
                      .  ++.....+.........+. +..+  ++.+...  ...|...++.+ ++. ..+..+ . ..|..+.++ .+.++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~  331 (686)
T PRK10115        255 ELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVE  331 (686)
T ss_pred             cCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEE
Confidence            3  3432222322223333333 3334  4444322  22455555542 322 233334 3 367778887 3345666


Q ss_pred             EeCCCeEEEE--ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc--CCCC-EEEE--E--ecCeEEEEECCCCc
Q 005342          604 SGADAQLCVW--DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQI-HLLS--I--HEGQIDVYEAPTLN  669 (701)
Q Consensus       604 ~s~D~~I~vw--d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s--pdg~-~l~s--g--~Dg~I~iwd~~~g~  669 (701)
                      ...++.-+++  +..++.   ...+. + ...    ..+..+.++  +++. ++++  +  .-+.+..+|..+++
T Consensus       332 ~~~~g~~~l~~~~~~~~~---~~~l~-~-~~~----~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        332 ERQRGLTSLRQINRKTRE---VIGIA-F-DDP----AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EEeCCEEEEEEEcCCCCc---eEEec-C-CCC----ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            6767765555  443322   11111 1 111    233334455  4444 4443  3  45779999988765

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.37  E-value=7.2  Score=45.10  Aligned_cols=251  Identities=11%  Similarity=0.020  Sum_probs=130.2

Q ss_pred             eEEEEEcCCC------CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          395 SRESTSLPDA------DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       395 V~~l~~spdg------~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      |.|+.++|-|      +.++.|..+..+.+--...  +........++...-+..|.-..+-.|..+|.++..||.+.-+
T Consensus       533 vaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p--d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~f  610 (1096)
T KOG1897|consen  533 VACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP--DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYF  610 (1096)
T ss_pred             eEEEecccCCCCCCcceEEEEEeecceEEEEEECC--CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEE
Confidence            8899999753      2677787666555433320  0111111112222234556666777788999999999999988


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEeCCeEEEEeCCCCcEEEE-ecCC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLAT-FANP  544 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~sdg~I~iwd~~~~~~~~~-~~~~  544 (701)
                      .+                   |..+|++....-..-...++.--.|+   ++.+++++|.-..+|.- +++.+.+ +. -
T Consensus       611 v~-------------------d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spls-~  669 (1096)
T KOG1897|consen  611 VL-------------------DINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPLS-L  669 (1096)
T ss_pred             EE-------------------EcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEeccc-h
Confidence            65                   55555533210000123455555555   66777777766666655 3333322 21 1


Q ss_pred             CCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCC--ceEEeecCCCCCeEEEEEecCCCEEEEEeCC------------
Q 005342          545 PPIATYFILLPQD---LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------------  607 (701)
Q Consensus       545 ~~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D------------  607 (701)
                      +..-.-+.|+.++   .++++.. +.+.+.-+..-  -.+++..-| .....+++.+....+++.+..            
T Consensus       670 kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~  747 (1096)
T KOG1897|consen  670 KEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEY  747 (1096)
T ss_pred             HHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcc
Confidence            1111122233333   4454433 45555544432  123343323 345677777744444443321            


Q ss_pred             --CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-CCEEEEEe-----------cCeEEEEECCCCceeee
Q 005342          608 --AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIH-----------EGQIDVYEAPTLNHTSQ  673 (701)
Q Consensus       608 --~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-g~~l~sg~-----------Dg~I~iwd~~~g~~~~~  673 (701)
                        ..++++|-++-+..+...+.   ....  ...+.++.|..| +.++++|.           .|.|.|+.+..++.++.
T Consensus       748 ~~s~l~vlD~nTf~vl~~hef~---~~E~--~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~  822 (1096)
T KOG1897|consen  748 EVSFLRVLDQNTFEVLSSHEFE---RNET--ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL  822 (1096)
T ss_pred             eEEEEEEecCCceeEEeecccc---ccce--eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence              24777777775433222222   1110  144666779888 77777651           36789998877544444


Q ss_pred             ee
Q 005342          674 VL  675 (701)
Q Consensus       674 l~  675 (701)
                      ..
T Consensus       823 v~  824 (1096)
T KOG1897|consen  823 VA  824 (1096)
T ss_pred             ee
Confidence            43

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.66  Score=43.47  Aligned_cols=168  Identities=14%  Similarity=0.056  Sum_probs=102.6

Q ss_pred             EEEec-CCEEEEEe---CCeEEEEeCCCCcEEEEecCCCCCeE--EEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC
Q 005342          511 CFALR-GSHLFSAS---GGKISIFSLETFQTLATFANPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG  584 (701)
Q Consensus       511 ~l~~s-~~~l~s~s---dg~I~iwd~~~~~~~~~~~~~~~~i~--~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~  584 (701)
                      .+... |.++.+.+   ...|++||+.+|+.+..-.-....+.  .+.-..|.+.+....+|.-..+|.++.+.+..+..
T Consensus        50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y  129 (262)
T COG3823          50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY  129 (262)
T ss_pred             ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence            44555 65566655   36899999999987765442222222  12222233445567889999999999888877763


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEE
Q 005342          585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY  663 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iw  663 (701)
                       .+.-+.++  .|+.-|+.++...+++.-|.++-.......+. ..+...   ..++.+.|- ||...|-- .+..|...
T Consensus       130 -~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv---~~LNELE~V-dG~lyANVw~t~~I~rI  201 (262)
T COG3823         130 -EGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPV---SKLNELEWV-DGELYANVWQTTRIARI  201 (262)
T ss_pred             -CCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeec---ccccceeee-ccEEEEeeeeecceEEE
Confidence             34445554  45665666666678888888774332211111 222111   445556664 45544433 56678888


Q ss_pred             ECCCCceeeeeee----------------eeEEEEEeeE
Q 005342          664 EAPTLNHTSQVLL----------------ISHIMFVQIV  686 (701)
Q Consensus       664 d~~~g~~~~~l~~----------------i~~~~fs~~~  686 (701)
                      |.++|+.+..+..                .++++|.|..
T Consensus       202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~  240 (262)
T COG3823         202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQ  240 (262)
T ss_pred             cCCCCcEEEEEEccCCchhcCccccccccccceeecCcC
Confidence            8999998877654                5677887765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.36  E-value=4.6  Score=42.78  Aligned_cols=197  Identities=14%  Similarity=0.172  Sum_probs=92.7

Q ss_pred             CCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccC-------CCCCCeEEEEec-CCEEEEE
Q 005342          452 SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-------DPKDSISCFALR-GSHLFSA  522 (701)
Q Consensus       452 dg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~~v~~l~~s-~~~l~s~  522 (701)
                      +.++|+..+- ++.|.|.|+.+.                 +..-++... +..       +-..+-+.-+.- |++++++
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~d-----------------Pr~P~l~Kv-Ie~~ev~~k~g~s~PHT~Hclp~G~imIS~  147 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTD-----------------PRKPRLHKV-IEPEEVFEKTGLSRPHTVHCLPDGRIMISA  147 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S------------------TTS-EEEEE-E-HHHHHHHH-EEEEEEEEE-SS--EEEEE
T ss_pred             cCCcEEeeeeccCcEEEEECCCC-----------------CCCCceEee-eCHHHHHhhcCCCCCceeeecCCccEEEEe
Confidence            4567888774 789999988653                 333332211 110       001111122222 6677765


Q ss_pred             e---C----CeEEEEeCCCCcEEEEecCC---CCCeEEEEEcCCC-eEEEEe--------------------CCCcEEEE
Q 005342          523 S---G----GKISIFSLETFQTLATFANP---PPIATYFILLPQD-LFAFGF--------------------DDSSILVH  571 (701)
Q Consensus       523 s---d----g~I~iwd~~~~~~~~~~~~~---~~~i~~l~~spdg-~l~~gs--------------------~dg~I~iw  571 (701)
                      -   +    |.+.++|-++..........   ...-..+-+.|.. .+++..                    ...++++|
T Consensus       148 lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vW  227 (461)
T PF05694_consen  148 LGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVW  227 (461)
T ss_dssp             EEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEE
T ss_pred             ccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEE
Confidence            2   1    67889998888877766532   2233667777876 666553                    23489999


Q ss_pred             eCCCCceEEeecCCCC--CeEEEEEe--cCCCE-EEEEeCCCeEEEEEC-CCCeeeeeeeeeeccCCC-----CCC----
Q 005342          572 CPCTKKTKAKLKGHQN--RITCLAYS--LSLNV-LVSSGADAQLCVWDA-VGWKKLCSKFLHSFQTGL-----VPE----  636 (701)
Q Consensus       572 d~~~~~~~~~l~~h~~--~V~~v~~s--pdg~~-l~s~s~D~~I~vwd~-~~g~~~~~~~l~~~~~~~-----~~~----  636 (701)
                      |+.+.+.++++.-...  .+..+.|.  |+..+ ++.+.-.++|..|-. ..|+-...+.+. ++...     .+.    
T Consensus       228 D~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~-ip~~~v~~~~lp~ml~~  306 (461)
T PF05694_consen  228 DWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID-IPAKKVEGWILPEMLKP  306 (461)
T ss_dssp             ETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE-E--EE--SS---GGGGG
T ss_pred             ECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE-CCCcccCcccccccccc
Confidence            9999999998874332  34456665  44443 333444556655554 455433333333 33211     000    


Q ss_pred             ----CCCeEEEEEcCCCCEEEEE--ecCeEEEEECCC
Q 005342          637 ----TTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT  667 (701)
Q Consensus       637 ----~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~  667 (701)
                          ..-|+.|..|.|.++|..+  .+|.|+-||+..
T Consensus       307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence                1457999999999999986  599999999965

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.31  E-value=3.5  Score=41.10  Aligned_cols=198  Identities=12%  Similarity=0.072  Sum_probs=116.0

Q ss_pred             CCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-C
Q 005342          438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G  516 (701)
Q Consensus       438 ~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~  516 (701)
                      .+-...+.++.|+|+.+.|++......-.|+                     =...|.++.. ++-..-...-.+.+. +
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVE---------------------lt~~Gdlirt-iPL~g~~DpE~Ieyig~  139 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVE---------------------LTKEGDLIRT-IPLTGFSDPETIEYIGG  139 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEE---------------------EecCCceEEE-ecccccCChhHeEEecC
Confidence            3455669999999999999998887777776                     2245554433 111122344567777 5


Q ss_pred             CEEEEEe--CCeEEEEeCCCCcEEE-----Ee-----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc---eEE
Q 005342          517 SHLFSAS--GGKISIFSLETFQTLA-----TF-----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKA  580 (701)
Q Consensus       517 ~~l~s~s--dg~I~iwd~~~~~~~~-----~~-----~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~---~~~  580 (701)
                      +.++.+.  ++.+.++.+.....+.     .+     .......-.++|+|.. .+..+-+..-+.||....+.   .++
T Consensus       140 n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~  219 (316)
T COG3204         140 NQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH  219 (316)
T ss_pred             CEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc
Confidence            5555555  7888887765442211     11     1114456889999999 77777777766666544221   111


Q ss_pred             eecCCC-------CCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCC---CCeEEEEEcCCC
Q 005342          581 KLKGHQ-------NRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET---TIVNHIQFHPDQ  649 (701)
Q Consensus       581 ~l~~h~-------~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~---~~v~~v~~spdg  649 (701)
                      ....+.       ..|.++.|++ .+.+++-+.+++.+.-.|....- +  ..+. +..|..+-.   ...-.|+..++|
T Consensus       220 ~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~-~--~~ls-L~~g~~gL~~dipqaEGiamDd~g  295 (316)
T COG3204         220 ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV-I--ELLS-LTKGNHGLSSDIPQAEGIAMDDDG  295 (316)
T ss_pred             cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe-e--eeEE-eccCCCCCcccCCCcceeEECCCC
Confidence            111121       2467788887 56677778888888888877642 1  2222 222321101   223467777777


Q ss_pred             CEEEEEecCeEE
Q 005342          650 IHLLSIHEGQID  661 (701)
Q Consensus       650 ~~l~sg~Dg~I~  661 (701)
                      ..-++|.-+-.+
T Consensus       296 ~lYIvSEPnlfy  307 (316)
T COG3204         296 NLYIVSEPNLFY  307 (316)
T ss_pred             CEEEEecCCcce
Confidence            766666544333

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.31  E-value=1.5  Score=43.26  Aligned_cols=139  Identities=14%  Similarity=0.059  Sum_probs=89.1

Q ss_pred             EEEec---CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCC--eEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCC-
Q 005342          511 CFALR---GSHLFSAS--GGKISIFSLETFQTLATFANPPPI--ATYFILLPQD-LFAFGFDD-----SSILVHCPCTK-  576 (701)
Q Consensus       511 ~l~~s---~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~--i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~-  576 (701)
                      .++++   ..-++.+-  .....++|..+.+...++...+..  .-.=.||||| ++...-.|     |.|-|||.+.+ 
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            44555   44455555  345678898887766655433222  1234689999 66554333     57999998854 


Q ss_pred             ceEEeecCCCCCeEEEEEecCCCEEEEEeC------------------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCC
Q 005342          577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA------------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT  638 (701)
Q Consensus       577 ~~~~~l~~h~~~V~~v~~spdg~~l~s~s~------------------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~  638 (701)
                      +.+.++.+|.-....+.|.+||+.++.+..                  .-++.+-|..+|+.+....+. -...+    .
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp-~~l~~----l  226 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP-ASLRQ----L  226 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc-hhhhh----c
Confidence            557788888878889999999998876543                  124556666666554433332 11122    6


Q ss_pred             CeEEEEEcCCCCEEEE
Q 005342          639 IVNHIQFHPDQIHLLS  654 (701)
Q Consensus       639 ~v~~v~~spdg~~l~s  654 (701)
                      .|..++..+||..++.
T Consensus       227 SiRHld~g~dgtvwfg  242 (366)
T COG3490         227 SIRHLDIGRDGTVWFG  242 (366)
T ss_pred             ceeeeeeCCCCcEEEE
Confidence            7888888888887765

>PHA02713 hypothetical protein; Provisional

Probab=95.28  E-value=1  Score=50.85  Aligned_cols=90  Identities=6%  Similarity=0.000  Sum_probs=48.6

Q ss_pred             eEEEEeCCCCcEE--EEecCCCCCeEEEEEcCCC-eEEEEeCC------CcEEEEeCCC-CceE--EeecCCCCCeEEEE
Q 005342          526 KISIFSLETFQTL--ATFANPPPIATYFILLPQD-LFAFGFDD------SSILVHCPCT-KKTK--AKLKGHQNRITCLA  593 (701)
Q Consensus       526 ~I~iwd~~~~~~~--~~~~~~~~~i~~l~~spdg-~l~~gs~d------g~I~iwd~~~-~~~~--~~l~~h~~~V~~v~  593 (701)
                      .+..||..+.+-.  ..+...... .+++ .-+| ..+.|+.+      ..+..||..+ .+..  ..+.........++
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             eEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence            4677887765432  222111111 1222 3345 55556543      2467899887 4433  33332323333333


Q ss_pred             EecCCCEEEEEeCCC--eEEEEECCCCe
Q 005342          594 YSLSLNVLVSSGADA--QLCVWDAVGWK  619 (701)
Q Consensus       594 ~spdg~~l~s~s~D~--~I~vwd~~~g~  619 (701)
                      +  +|+..+.||.|+  .+..||..+++
T Consensus       511 ~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        511 H--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             E--CCEEEEEeeecceeehhhcCccccc
Confidence            3  778888899888  78888888753

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.21  E-value=0.065  Score=37.68  Aligned_cols=33  Identities=15%  Similarity=0.657  Sum_probs=29.4

Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342          586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       586 ~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      ...|..++|+|...+||.++.||.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            357999999999999999999999999999 543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.21  E-value=4.7  Score=45.05  Aligned_cols=98  Identities=20%  Similarity=0.197  Sum_probs=65.1

Q ss_pred             CCeEEEEeCCCCcEEEEecCCCC-------------------------------Ce-EEEEEcCCC-eEEEEeCC-----
Q 005342          524 GGKISIFSLETFQTLATFANPPP-------------------------------IA-TYFILLPQD-LFAFGFDD-----  565 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~~~-------------------------------~i-~~l~~spdg-~l~~gs~d-----  565 (701)
                      +|.|.-+|.++|+.+..+.....                               .+ ..++++|.. ++..+..+     
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~  259 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN  259 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence            47899999999998876542211                               11 234677766 55555422     


Q ss_pred             C-----------cEEEEeCCCCceEEeecC--CCC-------CeEEEEEecCCC---EEEEEeCCCeEEEEECCCCeee
Q 005342          566 S-----------SILVHCPCTKKTKAKLKG--HQN-------RITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       566 g-----------~I~iwd~~~~~~~~~l~~--h~~-------~V~~v~~spdg~---~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      +           .|.-.|++||+..-.++.  |..       ...-+....+|+   .++.+..+|.+++.|..+|+.+
T Consensus       260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            2           677889999998776664  221       111122324665   7889999999999999999864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.15  E-value=0.73  Score=51.54  Aligned_cols=115  Identities=8%  Similarity=0.035  Sum_probs=73.6

Q ss_pred             CCeEEEEEcCCCeEEEEe-CCCcEEEEeCCCCceEEeec-CCCCCeEEEEEe--cCCCEEEEEeCCCeEEEEECCC----
Q 005342          546 PIATYFILLPQDLFAFGF-DDSSILVHCPCTKKTKAKLK-GHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVG----  617 (701)
Q Consensus       546 ~~i~~l~~spdg~l~~gs-~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~s--pdg~~l~s~s~D~~I~vwd~~~----  617 (701)
                      ..++-+.-|.-+.+|... ....+.|||.+.+.....-. ...+.|.++.|.  |||+.+.+.|..+.|.++.-..    
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344555555555444444 44589999998886544322 246789999886  5899999999999999986421    


Q ss_pred             -Cee--eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342          618 -WKK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  665 (701)
Q Consensus       618 -g~~--~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~  665 (701)
                       ..+  ...+.+. +. .+++  .+|....|.++|.+++ |.++.+.|+|-
T Consensus       110 ~~~p~w~~i~~i~-i~-~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKID-IS-SHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEE-ee-cCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence             111  1112222 22 3433  6789999999987554 45566777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=95.15  E-value=2.3  Score=47.86  Aligned_cols=102  Identities=14%  Similarity=0.062  Sum_probs=52.0

Q ss_pred             CCEEEEEe-C------CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC--------cEEEEeCCCCceE
Q 005342          516 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS--------SILVHCPCTKKTK  579 (701)
Q Consensus       516 ~~~l~s~s-d------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg--------~I~iwd~~~~~~~  579 (701)
                      +...+.|+ +      +.+..||..+++-...-..+.......+...++ .++.|+.++        .+.+||..+++..
T Consensus       390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~  469 (534)
T PHA03098        390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT  469 (534)
T ss_pred             CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence            66666665 2      468899987764322111011111111223345 555555322        3889998877543


Q ss_pred             Ee--ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCe
Q 005342          580 AK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWK  619 (701)
Q Consensus       580 ~~--l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~  619 (701)
                      ..  +.........+.  .+++.++.|+.+     +.|.+||..+..
T Consensus       470 ~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        470 ELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             eCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            32  111111112222  267777777654     478889888753

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.03  E-value=4.2  Score=40.53  Aligned_cols=169  Identities=11%  Similarity=0.099  Sum_probs=97.3

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |+++.|+|+.+.|++......-.+|=..    .|+... ++|..+ -.....+.|..+|++.++--.++.+.+..+....
T Consensus        88 vS~LTynp~~rtLFav~n~p~~iVElt~----~Gdlir-tiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          88 VSSLTYNPDTRTLFAVTNKPAAIVELTK----EGDLIR-TIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccceeeCCCcceEEEecCCCceEEEEec----CCceEE-Eecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            9999999999999988887777776544    555443 234433 3445678888888877666668888888663321


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc---EEEEecCC----
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---TLATFANP----  544 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~---~~~~~~~~----  544 (701)
                      .            +.+..+.++.-... .......-.++|+  ++.+..+- -.-+.||......   .++....+    
T Consensus       162 ~------------~~~~~~~~i~L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~  228 (316)
T COG3204         162 T------------VISAKVQKIPLGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR  228 (316)
T ss_pred             c------------EEeccceEEecccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccccc
Confidence            0            00111111100000 1114556788998  66677666 3434444432221   11111111    


Q ss_pred             ---CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeec
Q 005342          545 ---PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK  583 (701)
Q Consensus       545 ---~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~  583 (701)
                         -..+.++.|++..  +++.+.+++.+.-.|.. |.++..+.
T Consensus       229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls  271 (316)
T COG3204         229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS  271 (316)
T ss_pred             ceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence               1245777888765  77888888888888854 44454443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.96  E-value=0.39  Score=51.91  Aligned_cols=146  Identities=8%  Similarity=0.018  Sum_probs=88.5

Q ss_pred             CCeEEEEec-CCEEEEEe----CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-----eEEEEeCCCcEEEEeCCC-
Q 005342          507 DSISCFALR-GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCT-  575 (701)
Q Consensus       507 ~~v~~l~~s-~~~l~s~s----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-----~l~~gs~dg~I~iwd~~~-  575 (701)
                      .++..++|. |+.++-..    +|.+++=|-   ..+..|    ..|..++|.|-+     -+++......|.+|-+.- 
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            378899999 77655432    455554433   233443    368899999864     455666778999998752 


Q ss_pred             ----CceEEeecCCC-C----CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc
Q 005342          576 ----KKTKAKLKGHQ-N----RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH  646 (701)
Q Consensus       576 ----~~~~~~l~~h~-~----~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s  646 (701)
                          ++.+..-..+- .    --..+.|+|....|+.-.....-.+.++......  .... +. ++    +-|.|.+|.
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr--VkaD-i~-~~----G~IhCACWT  164 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR--VKAD-IK-TS----GLIHCACWT  164 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce--EEEe-cc-CC----ceEEEEEec
Confidence                22222111111 1    1245689999888876555444455666553211  1111 21 22    889999999


Q ss_pred             CCCCEEEEE--ecCeEEEEECCC
Q 005342          647 PDQIHLLSI--HEGQIDVYEAPT  667 (701)
Q Consensus       647 pdg~~l~sg--~Dg~I~iwd~~~  667 (701)
                      +||+.|+++  +.=.-+|||-..
T Consensus       165 ~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  165 KDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CcCCEEEEEeCCeEEEEEecCch
Confidence            999998875  444568898643

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.84  E-value=10  Score=43.97  Aligned_cols=243  Identities=12%  Similarity=0.046  Sum_probs=128.7

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |-...+-.|..+|.++..||.+.-+.++..  +++....+ ...-...++.=-.|+..++.-+.+.+|.-..+|.     
T Consensus       586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~--tg~lsd~K-k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~-----  657 (1096)
T KOG1897|consen  586 ILLTTFEGDIHYLLVALGDGALLYFVLDIN--TGQLSDRK-KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYS-----  657 (1096)
T ss_pred             eeeEEeeccceEEEEEcCCceEEEEEEEcc--cceEcccc-ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe-----
Confidence            555666677899999999999987766521  33222111 0011345666666776666555566666666663     


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCc--EEEEecCCCCCeEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQ--TLATFANPPPIATY  550 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~--~~~~~~~~~~~i~~  550 (701)
                                       .+++++...+.-..-..+..+.-+  +..++++..+.+++.-+..-+  .++++. .......
T Consensus       658 -----------------~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prr  719 (1096)
T KOG1897|consen  658 -----------------SNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRR  719 (1096)
T ss_pred             -----------------cCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhh
Confidence                             223322110100000111111111  556777776777776654332  234443 3345567


Q ss_pred             EEEcCCC-eEEEEeCC--------------CcEEEEeCCCCceEEeecCC--C--CCeEEEEEecC-CCEEEEEeC----
Q 005342          551 FILLPQD-LFAFGFDD--------------SSILVHCPCTKKTKAKLKGH--Q--NRITCLAYSLS-LNVLVSSGA----  606 (701)
Q Consensus       551 l~~spdg-~l~~gs~d--------------g~I~iwd~~~~~~~~~l~~h--~--~~V~~v~~spd-g~~l~s~s~----  606 (701)
                      +++.+.. .+++.+.-              ..++++|-.+.+.++..+-.  .  -.+.++.|..| +.+++.|..    
T Consensus       720 I~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~P  799 (1096)
T KOG1897|consen  720 ICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYP  799 (1096)
T ss_pred             eEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeecc
Confidence            7777755 44433221              14677887776665433211  1  14555668877 667777653    


Q ss_pred             ------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceee
Q 005342          607 ------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       607 ------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~  672 (701)
                            .|.|.|+....+..+  +.+.+..     -.+.+.++.-- +|+ +++|-...|++|++.+++.++
T Consensus       800 de~ep~~GRIivfe~~e~~~L--~~v~e~~-----v~Gav~aL~~f-ngk-llA~In~~vrLye~t~~~eLr  862 (1096)
T KOG1897|consen  800 DENEPVNGRIIVFEFEELNSL--ELVAETV-----VKGAVYALVEF-NGK-LLAGINQSVRLYEWTTERELR  862 (1096)
T ss_pred             CCCCcccceEEEEEEecCCce--eeeeeee-----eccceeehhhh-CCe-EEEecCcEEEEEEccccceeh
Confidence                  578888888773221  1111000     01445554322 344 445566789999998775444

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.51  E-value=2.5  Score=40.50  Aligned_cols=87  Identities=13%  Similarity=0.124  Sum_probs=57.2

Q ss_pred             EEEEec--CCEEEEE-e-CCeEEEEe--CCCCcE-----EEEecC---C-CCCeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 005342          510 SCFALR--GSHLFSA-S-GGKISIFS--LETFQT-----LATFAN---P-PPIATYFILLPQD-LFAFGFDDSSILVHCP  573 (701)
Q Consensus       510 ~~l~~s--~~~l~s~-s-dg~I~iwd--~~~~~~-----~~~~~~---~-~~~i~~l~~spdg-~l~~gs~dg~I~iwd~  573 (701)
                      ..++|+  .+.+... + +-+|.-||  ..+|..     +..++.   . ....-.+++..+| +.++....++|...|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            356676  3333333 3 66776666  555542     222221   1 1112345566778 7777778889999999


Q ss_pred             CCCceEEeecCCCCCeEEEEEec
Q 005342          574 CTKKTKAKLKGHQNRITCLAYSL  596 (701)
Q Consensus       574 ~~~~~~~~l~~h~~~V~~v~~sp  596 (701)
                      .+|+.+.+++-....|++++|..
T Consensus       241 ~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecC
Confidence            99999999988888999999964

>PHA03098 kelch-like protein; Provisional

Probab=94.28  E-value=3.4  Score=46.56  Aligned_cols=141  Identities=11%  Similarity=0.022  Sum_probs=69.2

Q ss_pred             CCEEEEEe-C-----CeEEEEeCCCCcEEE--EecCCCCCeEEEEEcCCC-eEEEEeCC------CcEEEEeCCCCceEE
Q 005342          516 GSHLFSAS-G-----GKISIFSLETFQTLA--TFANPPPIATYFILLPQD-LFAFGFDD------SSILVHCPCTKKTKA  580 (701)
Q Consensus       516 ~~~l~s~s-d-----g~I~iwd~~~~~~~~--~~~~~~~~i~~l~~spdg-~l~~gs~d------g~I~iwd~~~~~~~~  580 (701)
                      +...+.|+ +     ..+..||..+++-..  .+...... .+++ .-++ .++.|+.+      ..+..||..+.+...
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~  420 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK  420 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence            66666666 4     357788887664322  11111111 1222 2345 55555532      358899988765432


Q ss_pred             e--ecCCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342          581 K--LKGHQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  650 (701)
Q Consensus       581 ~--l~~h~~~V~~v~~spdg~~l~s~s~D--------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~  650 (701)
                      .  +....... + +...++...+.||.+        ..+.+||..+++-.....   .....    .....+.+  +++
T Consensus       421 ~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~r----~~~~~~~~--~~~  489 (534)
T PHA03098        421 GSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS---LNFPR----INASLCIF--NNK  489 (534)
T ss_pred             cCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC---CCccc----ccceEEEE--CCE
Confidence            1  11111111 1 222356666666542        238899988764222111   11111    11122222  566


Q ss_pred             EEEEE-e-----cCeEEEEECCCCc
Q 005342          651 HLLSI-H-----EGQIDVYEAPTLN  669 (701)
Q Consensus       651 ~l~sg-~-----Dg~I~iwd~~~g~  669 (701)
                      .++.| .     .+.+.+||..+.+
T Consensus       490 iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        490 IYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             EEEEcCCcCCcccceeEEEeCCCCE
Confidence            66664 2     2468899987764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.12  E-value=4.1  Score=40.77  Aligned_cols=151  Identities=12%  Similarity=0.046  Sum_probs=87.7

Q ss_pred             CeEEEEec--CCEEEEEe--C--CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEE-eCCCCceE
Q 005342          508 SISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH-CPCTKKTK  579 (701)
Q Consensus       508 ~v~~l~~s--~~~l~s~s--d--g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iw-d~~~~~~~  579 (701)
                      .+.+.+++  |+.++...  +  ..++++..  +....... ....+...+|++++ ..+....+...+++ +..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            67788888  66665544  4  45555554  33333321 23377888999999 55555555565655 33333221


Q ss_pred             E-eecC--CCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCC---C-eeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342          580 A-KLKG--HQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVG---W-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ  649 (701)
Q Consensus       580 ~-~l~~--h~~~V~~v~~spdg~~l~s~s---~D~~I~vwd~~~---g-~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg  649 (701)
                      . ....  -.+.|..+.+||||..+|...   .++.|+|=-+..   | ......++. +.....   ..++.+.|.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~-~~~~~~---~~v~~v~W~~~~  177 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR-VAPPLL---SDVTDVAWSDDS  177 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE-eccccc---CcceeeeecCCC
Confidence            1 1111  112799999999999777554   457888876553   2 111112222 221212   678999999999


Q ss_pred             CEEEEE--ecCeEEE-EEC
Q 005342          650 IHLLSI--HEGQIDV-YEA  665 (701)
Q Consensus       650 ~~l~sg--~Dg~I~i-wd~  665 (701)
                      .+++.+  .++.+.. ..+
T Consensus       178 ~L~V~~~~~~~~~~~~v~~  196 (253)
T PF10647_consen  178 TLVVLGRSAGGPVVRLVSV  196 (253)
T ss_pred             EEEEEeCCCCCceeEEEEc
Confidence            988775  4554444 444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.05  E-value=0.15  Score=35.90  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK  577 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~  577 (701)
                      ...|.+++|+|.. +||.|+.+|.|.+|.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            4578999999999 9999999999999998 444

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.73  E-value=3.5  Score=39.31  Aligned_cols=138  Identities=12%  Similarity=-0.026  Sum_probs=82.3

Q ss_pred             EEEEEcCCCeEEEEeCCCcEEEEeCC--CCceEEeecCCCCCeEEEEEecCCCEEEEEeCC------CeEEEE---ECCC
Q 005342          549 TYFILLPQDLFAFGFDDSSILVHCPC--TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVW---DAVG  617 (701)
Q Consensus       549 ~~l~~spdg~l~~gs~dg~I~iwd~~--~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D------~~I~vw---d~~~  617 (701)
                      ..++-++.+.+..+...+.|.+|++.  ..+...+|..- +.|..+.++..|+||+|--.+      ..+|+|   +...
T Consensus        21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~   99 (215)
T PF14761_consen   21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK   99 (215)
T ss_pred             ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence            44555553333333566789999988  34566677643 789999999999999985432      255665   2221


Q ss_pred             --CeeeeeeeeeeccCCCC------------------CCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce-ee---e
Q 005342          618 --WKKLCSKFLHSFQTGLV------------------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH-TS---Q  673 (701)
Q Consensus       618 --g~~~~~~~l~~~~~~~~------------------~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~-~~---~  673 (701)
                        ..+.+.   + + .||.                  |...++.+++..|-.--|++|.++.+.+|.+..+.. ..   .
T Consensus       100 ~~~~~v~v---R-i-aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~  174 (215)
T PF14761_consen  100 EENSPVRV---R-I-AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSF  174 (215)
T ss_pred             ccCCcEEE---E-E-cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccE
Confidence              111110   0 1 1111                  122567888888875567778888999998854433 11   1


Q ss_pred             eee-----eeEEEEEeeEEeeeec
Q 005342          674 VLL-----ISHIMFVQIVVKFHSF  692 (701)
Q Consensus       674 l~~-----i~~~~fs~~~~~f~~~  692 (701)
                      +.-     +-...|.|..+.|...
T Consensus       175 lDFe~~l~~~~~~~~p~~v~ic~~  198 (215)
T PF14761_consen  175 LDFERSLIDHIDNFKPTQVAICEG  198 (215)
T ss_pred             EechhhhhheecCceEEEEEEEee
Confidence            111     5566777777777654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.72  E-value=2.6  Score=47.59  Aligned_cols=187  Identities=12%  Similarity=0.050  Sum_probs=95.2

Q ss_pred             CCCeEEEEcCC------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342          403 DADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  476 (701)
Q Consensus       403 dg~~l~s~s~d------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  476 (701)
                      +|...++||.|      .++..||..    .++...+. +..  ..+...-.-.-+|...++||.||.-.+=        
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~----~~~W~~~a-~M~--~~R~~~~v~~l~g~iYavGG~dg~~~l~--------  396 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPR----TNQWTPVA-PMN--TKRSDFGVAVLDGKLYAVGGFDGEKSLN--------  396 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCC----CCceeccC-Ccc--CccccceeEEECCEEEEEeccccccccc--------
Confidence            44777888888      245566665    34322211 111  1222211223367777888888543332        


Q ss_pred             ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEe---cCCEEEEEe-C------CeEEEEeCCCCcEE--EEecCC
Q 005342          477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL---RGSHLFSAS-G------GKISIFSLETFQTL--ATFANP  544 (701)
Q Consensus       477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~---s~~~l~s~s-d------g~I~iwd~~~~~~~--~~~~~~  544 (701)
                              ++..||+.+++.-..   ..........+.   .|...++|+ +      .++..||..+++-.  ..+...
T Consensus       397 --------svE~YDp~~~~W~~v---a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~  465 (571)
T KOG4441|consen  397 --------SVECYDPVTNKWTPV---APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR  465 (571)
T ss_pred             --------cEEEecCCCCccccc---CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc
Confidence                    134456666663211   111112222222   266666666 4      35788888776532  222211


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEEe--ecCCCCCeEEEEEecCCCEEEEEeCCC-----eEE
Q 005342          545 PPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAK--LKGHQNRITCLAYSLSLNVLVSSGADA-----QLC  611 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg-----~I~iwd~~~~~~~~~--l~~h~~~V~~v~~spdg~~l~s~s~D~-----~I~  611 (701)
                      .... .++. -++ ..++|+.|+     +|..||..+.+....  +....+.+..+.+  ++...+.|+.||     +|-
T Consensus       466 R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve  541 (571)
T KOG4441|consen  466 RSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVE  541 (571)
T ss_pred             cccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeE
Confidence            2221 2322 345 777777776     478899887765443  2212222222222  566777788776     577


Q ss_pred             EEECCCCe
Q 005342          612 VWDAVGWK  619 (701)
Q Consensus       612 vwd~~~g~  619 (701)
                      .||..+++
T Consensus       542 ~ydp~~d~  549 (571)
T KOG4441|consen  542 CYDPETDT  549 (571)
T ss_pred             EcCCCCCc
Confidence            77777654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.50  E-value=3.3  Score=36.22  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=71.8

Q ss_pred             EEcCCC-eEEEEeCCCcEEEEeCCCC--------ceEEeecCCCCCeEEEEEec-----CCCEEEEEeCCCeEEEEECCC
Q 005342          552 ILLPQD-LFAFGFDDSSILVHCPCTK--------KTKAKLKGHQNRITCLAYSL-----SLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       552 ~~spdg-~l~~gs~dg~I~iwd~~~~--------~~~~~l~~h~~~V~~v~~sp-----dg~~l~s~s~D~~I~vwd~~~  617 (701)
                      .|.... .|++++.-|+|.|++....        ..+..+. -...|++++-.|     +...|+.|+ ...+-.||+..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence            455555 7889999999999987643        2334444 345678876554     234666565 56899999998


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcC----CCCEEEEEecCeEEEEECCCCceeee
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHP----DQIHLLSIHEGQIDVYEAPTLNHTSQ  673 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp----dg~~l~sg~Dg~I~iwd~~~g~~~~~  673 (701)
                      ...+..+.+.          ..|+++.+-.    +.+++++|.+..|.-||.+..+..-+
T Consensus        83 N~d~Fyke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   83 NSDLFYKEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             CchhhhhhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence            6533323333          6677777642    35677778888888888765555443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.48  E-value=0.26  Score=46.83  Aligned_cols=101  Identities=12%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEE
Q 005342          453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKIS  528 (701)
Q Consensus       453 g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~  528 (701)
                      +..+++|+.+|.|.+|++...                   ....-   ....-...|.++-..   +.+..+++ +|.|+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~-------------------g~~~d---~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir  127 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLE-------------------GAHSD---RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIR  127 (238)
T ss_pred             CceEEeecccceEEEecCCcc-------------------chHHH---hhhcccccceeccccccccceeEEeccCCcee
Confidence            456899999999999976321                   11100   001112334333333   44666666 99999


Q ss_pred             EEeCCCCcEEEEecCCC-CCeEEEEEcCCC-eEEEE--eCCCcEEEEeCCC
Q 005342          529 IFSLETFQTLATFANPP-PIATYFILLPQD-LFAFG--FDDSSILVHCPCT  575 (701)
Q Consensus       529 iwd~~~~~~~~~~~~~~-~~i~~l~~spdg-~l~~g--s~dg~I~iwd~~~  575 (701)
                      .|++.-++.+.....|. .++.....+..+ ++++.  |.|..++.|++..
T Consensus       128 ~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  128 ACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            99998888776666565 444444444444 55555  6777777777654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.33  E-value=20  Score=41.84  Aligned_cols=100  Identities=16%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             CCeEEEEeCCCCcEEEEecCC---------CC--------Ce-EEEEEcCCC-eEEEEe------------------CCC
Q 005342          524 GGKISIFSLETFQTLATFANP---------PP--------IA-TYFILLPQD-LFAFGF------------------DDS  566 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~---------~~--------~i-~~l~~spdg-~l~~gs------------------~dg  566 (701)
                      +|.|+-+|.+||+.+..+...         ..        .+ ...+++|+. .++.+.                  ..+
T Consensus       335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~  414 (764)
T TIGR03074       335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS  414 (764)
T ss_pred             CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence            478999999999998877421         00        11 234556655 433322                  224


Q ss_pred             cEEEEeCCCCceEEeecC-CCC--------CeEEEEEec-CCC---EEEEEeCCCeEEEEECCCCeeeee
Q 005342          567 SILVHCPCTKKTKAKLKG-HQN--------RITCLAYSL-SLN---VLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       567 ~I~iwd~~~~~~~~~l~~-h~~--------~V~~v~~sp-dg~---~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                      .|.-.|.+||+..-.++. |..        ...=+.+.. +|+   .++.++.+|.+++.|.++|+.+..
T Consensus       415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            677788889988766654 211        111122322 563   788999999999999999987653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA02790 Kelch-like protein; Provisional

Probab=93.30  E-value=7.8  Score=42.89  Aligned_cols=98  Identities=10%  Similarity=0.009  Sum_probs=49.0

Q ss_pred             CCEEEEEe-C---CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe--ecCCCCC
Q 005342          516 GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--LKGHQNR  588 (701)
Q Consensus       516 ~~~l~s~s-d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~--l~~h~~~  588 (701)
                      |...+.|+ +   ..+..||.++.+-...-.-........+..-+| ..+.|   |.+.+||..+++....  +......
T Consensus       363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~  439 (480)
T PHA02790        363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDN  439 (480)
T ss_pred             CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccc
Confidence            66666666 4   356788887654322111011111112223456 55565   4577899887655322  2211112


Q ss_pred             eEEEEEecCCCEEEEEeCC-----CeEEEEECCCC
Q 005342          589 ITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGW  618 (701)
Q Consensus       589 V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g  618 (701)
                      ...+  --+|+..+.||.+     .+|.+||..++
T Consensus       440 ~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        440 PELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             cEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence            2222  2367777777754     35677777764

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.24  E-value=0.23  Score=57.30  Aligned_cols=128  Identities=12%  Similarity=0.065  Sum_probs=83.0

Q ss_pred             CCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceE-----EeecCC------CCCeEEEEEecCCC-EEEEEeCCCeE
Q 005342          546 PIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTK-----AKLKGH------QNRITCLAYSLSLN-VLVSSGADAQL  610 (701)
Q Consensus       546 ~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~~~~-----~~l~~h------~~~V~~v~~spdg~-~l~s~s~D~~I  610 (701)
                      .++..+...+|+   .++..+.+-.|+.||+++...-     .-|..|      .....++.|+|.-. ..+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            345666667777   3333344447899998764321     112222      23456788998543 45677889999


Q ss_pred             EEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee--------eeEEE
Q 005342          611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL--------ISHIM  681 (701)
Q Consensus       611 ~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~--------i~~~~  681 (701)
                      +|..+.--...    ..+++..     ..+++++|+|.|+.++.| ..|++.-|.. +++....+++        |.+++
T Consensus       181 ~V~~~~~~~~~----v~s~p~t-----~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~  250 (1405)
T KOG3630|consen  181 RVKSTKQLAQN----VTSFPVT-----NSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVT  250 (1405)
T ss_pred             hhhhhhhhhhh----hcccCcc-----cceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEE
Confidence            99887653222    1211111     678999999999999999 7888888876 6776666665        77777


Q ss_pred             EE
Q 005342          682 FV  683 (701)
Q Consensus       682 fs  683 (701)
                      |-
T Consensus       251 Wl  252 (1405)
T KOG3630|consen  251 WL  252 (1405)
T ss_pred             Ee
Confidence            73

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.99  E-value=13  Score=38.78  Aligned_cols=70  Identities=14%  Similarity=0.091  Sum_probs=42.3

Q ss_pred             CCeEEEEEec-------CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC
Q 005342          587 NRITCLAYSL-------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG  658 (701)
Q Consensus       587 ~~V~~v~~sp-------dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg  658 (701)
                      ..+..+.|-.       .|.++++.-..+.|...++..+....  ....+.....   ..+..+++.|||.+.++. .+|
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~---~r~~~v~~~pDG~Lyv~~d~~G  327 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT--EEEEFLGGFG---GRPRDVAQGPDGALYVSDDSDG  327 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE--EEEEECTTSS---S-EEEEEEETTSEEEEEE-TTT
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc--ceEEccccCC---CCceEEEEcCCCeEEEEECCCC
Confidence            4566777753       45567766667788888887553321  1222232332   578999999999888775 577


Q ss_pred             eEE
Q 005342          659 QID  661 (701)
Q Consensus       659 ~I~  661 (701)
                      .|+
T Consensus       328 ~iy  330 (331)
T PF07995_consen  328 KIY  330 (331)
T ss_dssp             TEE
T ss_pred             eEe
Confidence            653

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.76  E-value=24  Score=41.21  Aligned_cols=156  Identities=14%  Similarity=0.035  Sum_probs=88.7

Q ss_pred             CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe-------------EEEEEcC---CCeEEEEeC----------CCcE
Q 005342          516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-------------TYFILLP---QDLFAFGFD----------DSSI  568 (701)
Q Consensus       516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i-------------~~l~~sp---dg~l~~gs~----------dg~I  568 (701)
                      +..++.++ |+.+.-.|.++|+....+.. ...+             ..+.-.|   ++.+++|+.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            45677777 99999999999998877642 1111             1112222   335556643          6889


Q ss_pred             EEEeCCCCceEEeecCC---------CC--------Ce-EEEEEecCCCEEEEEe------------------CCCeEEE
Q 005342          569 LVHCPCTKKTKAKLKGH---------QN--------RI-TCLAYSLSLNVLVSSG------------------ADAQLCV  612 (701)
Q Consensus       569 ~iwd~~~~~~~~~l~~h---------~~--------~V-~~v~~spdg~~l~s~s------------------~D~~I~v  612 (701)
                      +-+|.++|+.+-.+..-         .+        .+ ...++.|+...++.+.                  ..+.|.-
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            99999999987665410         00        11 2234444444333321                  2356777


Q ss_pred             EECCCCeeeeeeeeeeccCCCCCCC----CCeEEEEEcC-CCC---EEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          613 WDAVGWKKLCSKFLHSFQTGLVPET----TIVNHIQFHP-DQI---HLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       613 wd~~~g~~~~~~~l~~~~~~~~~~~----~~v~~v~~sp-dg~---~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      .|.++|+..-.....    +|..-+    ....-+.+.. +|+   .++.+ .+|.+.+.|-++|+.+...+.
T Consensus       419 LD~~TGk~~W~~Q~~----~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       419 LDATTGKERWVFQTV----HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             EeCCCCceEEEeccc----CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            788888644322111    221000    1111222333 563   55555 799999999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.64  E-value=2.6  Score=48.60  Aligned_cols=71  Identities=17%  Similarity=0.079  Sum_probs=39.3

Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC----------Cce--E-Eee--------cCCCCCeEEEEEecC---CCE
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCT----------KKT--K-AKL--------KGHQNRITCLAYSLS---LNV  600 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~----------~~~--~-~~l--------~~h~~~V~~v~~spd---g~~  600 (701)
                      -.|..+.++|+| ++|..+..| |.|..+..          |+.  . +++        ..+...|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            357889999999 777777655 33333321          110  0 000        012235666666664   356


Q ss_pred             EEEEeCCCeEEEEECCC
Q 005342          601 LVSSGADAQLCVWDAVG  617 (701)
Q Consensus       601 l~s~s~D~~I~vwd~~~  617 (701)
                      |+.-..|+++|+||+..
T Consensus       164 l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEEecCCEEEEEecCC
Confidence            66666666666666654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.43  E-value=0.93  Score=44.16  Aligned_cols=80  Identities=9%  Similarity=0.125  Sum_probs=55.2

Q ss_pred             EEecCCCEEEEEeCCCeEEEEECCCCeeeeee-eeeeccCCCC----CCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342          593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-FLHSFQTGLV----PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT  667 (701)
Q Consensus       593 ~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~-~l~~~~~~~~----~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~  667 (701)
                      .+..++++|++.+.+|.+++||+.+++..... .+..+.....    .....|..+.++.+|.-+++-.+|..+.|+..-
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            35567889999999999999999998654322 2221221100    112778999999999888876778889999865


Q ss_pred             Cceee
Q 005342          668 LNHTS  672 (701)
Q Consensus       668 g~~~~  672 (701)
                      +.-++
T Consensus        97 ~~W~~  101 (219)
T PF07569_consen   97 GCWIR  101 (219)
T ss_pred             ceeEE
Confidence            54444

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.32  E-value=3.7  Score=41.02  Aligned_cols=111  Identities=13%  Similarity=0.047  Sum_probs=68.6

Q ss_pred             CeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE-CCCCeee
Q 005342          547 IATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD-AVGWKKL  621 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs---~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd-~~~g~~~  621 (701)
                      .+.+.+++++| .+|...   ....++++.... .....+.+.  .+..-.|++++...+....+...+++. ...+.. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~-  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG-  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence            67899999999 666555   333566665432 222222333  677889999988766666666667764 344421 


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E---ecCeEEEEECC
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAP  666 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g---~Dg~I~iwd~~  666 (701)
                        .... +.....  ...|..+.+||||..+|. .   .++.|.|--+.
T Consensus       101 --~~~~-v~~~~~--~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen  101 --EPVE-VDWPGL--RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             --eeEE-eccccc--CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence              1222 222211  027999999999999886 2   36777777653

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.22  E-value=4.7  Score=42.84  Aligned_cols=135  Identities=13%  Similarity=0.110  Sum_probs=76.1

Q ss_pred             CeEEEEec--CCEEEEE-----------e-CC-eEEEEeCCC--Cc--EEEEecCCCCCeEEEEEcCCCeEEEEeCCCcE
Q 005342          508 SISCFALR--GSHLFSA-----------S-GG-KISIFSLET--FQ--TLATFANPPPIATYFILLPQDLFAFGFDDSSI  568 (701)
Q Consensus       508 ~v~~l~~s--~~~l~s~-----------s-dg-~I~iwd~~~--~~--~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I  568 (701)
                      ....++|.  |+++++-           . .+ .|.+++-.+  |+  ....+...-.....+++.++| +++++.. .|
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~-~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPP-DI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCC-eE
Confidence            45577888  6655553           1 23 777776533  33  233443333455889999999 3334444 45


Q ss_pred             E-EEeCCCC-----c---eEEeecC----CCCCeEEEEEecCCCEEEEEeCC-------------------CeEEEEECC
Q 005342          569 L-VHCPCTK-----K---TKAKLKG----HQNRITCLAYSLSLNVLVSSGAD-------------------AQLCVWDAV  616 (701)
Q Consensus       569 ~-iwd~~~~-----~---~~~~l~~----h~~~V~~v~~spdg~~l~s~s~D-------------------~~I~vwd~~  616 (701)
                      . +.|....     +   .+..+..    +....+.++|.|||.+.++.+..                   +.|.-+|..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            4 4354321     1   1222322    13447889999999866654421                   456666666


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      +++.   +.   +..+.    ...+.++|+|+|+++++
T Consensus       173 g~~~---e~---~a~G~----rnp~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       173 GGKL---RV---VAHGF----QNPYGHSVDSWGDVFFC  200 (367)
T ss_pred             CCeE---EE---EecCc----CCCccceECCCCCEEEE
Confidence            5431   11   22233    44578999999998877

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.82  E-value=0.2  Score=56.39  Aligned_cols=163  Identities=9%  Similarity=0.081  Sum_probs=94.3

Q ss_pred             CCCCCCeEEEEec-CC--EEEEEe-CCeEEEEeCC--CCcE-----EEEecCCCCCeEEEEEcC---CC-eEEEEeCCCc
Q 005342          503 ADPKDSISCFALR-GS--HLFSAS-GGKISIFSLE--TFQT-----LATFANPPPIATYFILLP---QD-LFAFGFDDSS  567 (701)
Q Consensus       503 ~~~~~~v~~l~~s-~~--~l~s~s-dg~I~iwd~~--~~~~-----~~~~~~~~~~i~~l~~sp---dg-~l~~gs~dg~  567 (701)
                      ++..+.+-.++|- .+  .+.  . -|.+.+||+.  .|+.     ++........+.-+.|.|   +. ++..+-.++.
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~  206 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE  206 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence            4666677777765 11  111  2 2678888864  3332     222333334445555554   45 8888889999


Q ss_pred             EEEEeCCCCceEEeecCCCCCeEEEE-----------EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCC
Q 005342          568 ILVHCPCTKKTKAKLKGHQNRITCLA-----------YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE  636 (701)
Q Consensus       568 I~iwd~~~~~~~~~l~~h~~~V~~v~-----------~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~  636 (701)
                      |++.+..+... ..+++|..++..++           .||||..+|+++.||.++.|.+.-.......+++... .|.+ 
T Consensus       207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk-phd~-  283 (1283)
T KOG1916|consen  207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK-PHDK-  283 (1283)
T ss_pred             eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC-CCCC-
Confidence            98877655433 55666877665543           5899999999999999999987642222223333222 2211 


Q ss_pred             CCCeEEEEEcCC-------CC--EEEEE--ecCeEEEEECCCCcee
Q 005342          637 TTIVNHIQFHPD-------QI--HLLSI--HEGQIDVYEAPTLNHT  671 (701)
Q Consensus       637 ~~~v~~v~~spd-------g~--~l~sg--~Dg~I~iwd~~~g~~~  671 (701)
                       .+-.|.-|+..       +.  +++++  -+..+++|....-+|+
T Consensus       284 -~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  284 -HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             -CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence             22222223322       22  34444  2456999998777776

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.50  E-value=9.7  Score=42.88  Aligned_cols=100  Identities=14%  Similarity=0.015  Sum_probs=65.4

Q ss_pred             CCEEEEEe-CCeEEEEeCCCCcEEEEec-CCCCCeEEEEEc--CCC-eEEEEeCCCcEEEEeCC-----C----CceEEe
Q 005342          516 GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILL--PQD-LFAFGFDDSSILVHCPC-----T----KKTKAK  581 (701)
Q Consensus       516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s--pdg-~l~~gs~dg~I~iwd~~-----~----~~~~~~  581 (701)
                      ++..++.+ ...+.|||.+.+.....-. .....|..+.|.  |+| .+++.+..+.|.+|.-.     .    ...++.
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~  120 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK  120 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence            44444444 5789999998887543322 346788888875  677 66666777888887531     1    123333


Q ss_pred             e--cCCC-CCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          582 L--KGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       582 l--~~h~-~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +  ..|+ .+|.+..|.++|.+++.++  +.+.|+|-.-
T Consensus       121 i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~~  157 (631)
T PF12234_consen  121 IDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKWL  157 (631)
T ss_pred             EEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCCc
Confidence            2  3344 5799999999998776443  5788887644

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.92  E-value=21  Score=36.61  Aligned_cols=151  Identities=18%  Similarity=0.136  Sum_probs=77.0

Q ss_pred             CCCCCeEEEEec--CCEEEEEeCC-eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe-CCCCce
Q 005342          504 DPKDSISCFALR--GSHLFSASGG-KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC-PCTKKT  578 (701)
Q Consensus       504 ~~~~~v~~l~~s--~~~l~s~sdg-~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd-~~~~~~  578 (701)
                      .....+..+..+  |.++++++.| ...-||--...-...-......|.++.|+|++ +.++ ...|.|+.=+ ....+.
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCccc
Confidence            344667777766  7888888854 55677753222222222346789999999999 4443 4888888877 222222


Q ss_pred             EEe----ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          579 KAK----LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       579 ~~~----l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      -..    .....-.+..++|.+++...|+|+. |.+. .....|+.=  +..+ . ....+  ...+.|.|.++.+-++.
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW--~~~~-~-~~~~~--~n~~~i~f~~~~~gf~l  292 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTW--QKDR-V-GENVP--SNLYRIVFVNPDKGFVL  292 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS---EE-G-G-GTTSS--S---EEEEEETTEEEEE
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccc--eECc-c-ccCCC--CceEEEEEcCCCceEEE
Confidence            111    1111224789999998887776654 4433 344444311  1111 0 01111  66889999888888999


Q ss_pred             EecCeEEEE
Q 005342          655 IHEGQIDVY  663 (701)
Q Consensus       655 g~Dg~I~iw  663 (701)
                      |.+|.|--|
T Consensus       293 G~~G~ll~~  301 (302)
T PF14870_consen  293 GQDGVLLRY  301 (302)
T ss_dssp             -STTEEEEE
T ss_pred             CCCcEEEEe
Confidence            999987555

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.65  E-value=25  Score=37.09  Aligned_cols=185  Identities=16%  Similarity=0.181  Sum_probs=105.6

Q ss_pred             CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEE----ecCCCE--EEEEEC-C---CcEEEEecC
Q 005342          402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY----SHSGDF--LVALTQ-T---ATHKLWKWQ  471 (701)
Q Consensus       402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~----spdg~~--l~s~s~-d---g~i~vwd~~  471 (701)
                      |...+++....++-+.+||++    ..+...+.      .++...+..    .-+|+.  |++++. +   ..|++|.+ 
T Consensus        66 p~kSlIigTdK~~GL~VYdL~----Gk~lq~~~------~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i-  134 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD----GKELQSLP------VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI-  134 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT----S-EEEEE-------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE-
T ss_pred             cccceEEEEeCCCCEEEEcCC----CcEEEeec------CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe-
Confidence            456688888888999999996    44444322      233333322    124443  445543 2   46999976 


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccC------CCCCCeEEEEec-----CCE-EEEEe-CCeEEEEeCC---CC
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAA------DPKDSISCFALR-----GSH-LFSAS-GGKISIFSLE---TF  535 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~v~~l~~s-----~~~-l~s~s-dg~I~iwd~~---~~  535 (701)
                                        |+.++.+..  +..      .....+..+++-     |.+ ++... +|.+..|-+.   .+
T Consensus       135 ------------------d~~~g~L~~--v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g  194 (381)
T PF02333_consen  135 ------------------DPDTGELTD--VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG  194 (381)
T ss_dssp             ------------------ETTTTEEEE---CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS
T ss_pred             ------------------cCCCCcceE--cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC
Confidence                              444444321  100      111245566653     444 44444 7888777653   33


Q ss_pred             ----cEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-----CceEEeecC--CCCCeEEEEEec--CCC--
Q 005342          536 ----QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-----KKTKAKLKG--HQNRITCLAYSL--SLN--  599 (701)
Q Consensus       536 ----~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~-----~~~~~~l~~--h~~~V~~v~~sp--dg~--  599 (701)
                          +.+++|.. .+.+-.|...... .|..|-++.-|+-|+.+-     ++.+....+  ....|-.++.-.  +++  
T Consensus       195 ~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gY  273 (381)
T PF02333_consen  195 KVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGY  273 (381)
T ss_dssp             SEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EE
T ss_pred             cEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeE
Confidence                36778874 4578888888887 999999999999998762     233333333  345677777643  443  


Q ss_pred             EEEEEeCCCeEEEEECCCC
Q 005342          600 VLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       600 ~l~s~s~D~~I~vwd~~~g  618 (701)
                      +|||.-.+++..||+....
T Consensus       274 LivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  274 LIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEEGGGTEEEEEESSTT
T ss_pred             EEEEcCCCCeEEEEecCCC
Confidence            4455556889999998863

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.60  E-value=7.2  Score=41.46  Aligned_cols=98  Identities=14%  Similarity=0.168  Sum_probs=55.4

Q ss_pred             CeEEEEec-CCEEEEEeCCeEEEE-eCCCC-----c---EEEEecCC----CCCeEEEEEcCCC--eEEEEeC-------
Q 005342          508 SISCFALR-GSHLFSASGGKISIF-SLETF-----Q---TLATFANP----PPIATYFILLPQD--LFAFGFD-------  564 (701)
Q Consensus       508 ~v~~l~~s-~~~l~s~sdg~I~iw-d~~~~-----~---~~~~~~~~----~~~i~~l~~spdg--~l~~gs~-------  564 (701)
                      ....+++. +. +++++...|..| |....     +   .+..+...    ......+++.|||  ++..|+.       
T Consensus        73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~  151 (367)
T TIGR02604        73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTR  151 (367)
T ss_pred             CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceecc
Confidence            45678887 44 555554445444 54321     1   11223221    2346789999999  5555532       


Q ss_pred             -----------CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 005342          565 -----------DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD  607 (701)
Q Consensus       565 -----------dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D  607 (701)
                                 .|.|.-+|..+++....-.++ ...+.++|+|+|+++++-..+
T Consensus       152 ~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       152 PGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence                       145677776655443322334 335789999999987765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.27  E-value=3.7  Score=43.89  Aligned_cols=25  Identities=12%  Similarity=0.009  Sum_probs=18.2

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEE
Q 005342          547 IATYFILLPQD-LFAFGFDDSSILVH  571 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~dg~I~iw  571 (701)
                      .|..+..++.| .++..+.+|.+.++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            45677888888 88877778765544

>PHA02790 Kelch-like protein; Provisional

Probab=90.24  E-value=28  Score=38.50  Aligned_cols=139  Identities=9%  Similarity=-0.016  Sum_probs=67.3

Q ss_pred             CCEEEEEe-C--CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEe--ecCC
Q 005342          516 GSHLFSAS-G--GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAK--LKGH  585 (701)
Q Consensus       516 ~~~l~s~s-d--g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~dg---~I~iwd~~~~~~~~~--l~~h  585 (701)
                      |...+.|+ +  ..+..||..+++-.. ......+. ...+..-+| ..+.|+.++   .+..||.++.+....  +...
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~  397 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP  397 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence            55556666 3  467888876554221 11111111 112223356 666666543   477888877654331  1111


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec-----Ce
Q 005342          586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----GQ  659 (701)
Q Consensus       586 ~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D-----g~  659 (701)
                      .... + +..-+|+..+.|+   .+.+||..+++-..   +..++..+    .....+  .-+|+..+.| .+     .+
T Consensus       398 r~~~-~-~~~~~~~IYv~GG---~~e~ydp~~~~W~~---~~~m~~~r----~~~~~~--v~~~~IYviGG~~~~~~~~~  463 (480)
T PHA02790        398 HYKS-C-ALVFGRRLFLVGR---NAEFYCESSNTWTL---IDDPIYPR----DNPELI--IVDNKLLLIGGFYRGSYIDT  463 (480)
T ss_pred             cccc-e-EEEECCEEEEECC---ceEEecCCCCcEeE---cCCCCCCc----cccEEE--EECCEEEEECCcCCCcccce
Confidence            1111 1 2233566556553   56788988764222   22122111    222222  2356666664 32     35


Q ss_pred             EEEEECCCCc
Q 005342          660 IDVYEAPTLN  669 (701)
Q Consensus       660 I~iwd~~~g~  669 (701)
                      +..||..+++
T Consensus       464 ve~Yd~~~~~  473 (480)
T PHA02790        464 IEVYNNRTYS  473 (480)
T ss_pred             EEEEECCCCe
Confidence            7788887665

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.14  E-value=31  Score=40.66  Aligned_cols=142  Identities=13%  Similarity=0.097  Sum_probs=86.3

Q ss_pred             CCCCCeEEEEEc---C--CC--eEEEEeCCCcEEEEeCC------C---------CceEEeecCC---CCCeEEEEEec-
Q 005342          543 NPPPIATYFILL---P--QD--LFAFGFDDSSILVHCPC------T---------KKTKAKLKGH---QNRITCLAYSL-  596 (701)
Q Consensus       543 ~~~~~i~~l~~s---p--dg--~l~~gs~dg~I~iwd~~------~---------~~~~~~l~~h---~~~V~~v~~sp-  596 (701)
                      ....+|..|+|.   .  +.  ..+..-....++|+...      .         ..++..+..+   ..+...++|+| 
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            356788888887   2  22  24444555667777621      1         1233344321   23677899999 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC---CCC----CCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342          597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT---GLV----PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN  669 (701)
Q Consensus       597 dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~---~~~----~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~  669 (701)
                      +...||.....|...||++..+.+.....+. +..   |+.    .....-..+.|.++...|++.+...+.++|+.+..
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~  235 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW  235 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCccee-eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence            5668999999999999999332221111121 111   111    00133458999999889999888899999998876


Q ss_pred             eeeee-ee-----eeEEEEEee
Q 005342          670 HTSQV-LL-----ISHIMFVQI  685 (701)
Q Consensus       670 ~~~~l-~~-----i~~~~fs~~  685 (701)
                      ....+ ..     |-.+.-+|.
T Consensus       236 ~~~~l~~~~~~~~IlDv~~~~~  257 (765)
T PF10214_consen  236 QTEYLVTAKTWSWILDVKRSPD  257 (765)
T ss_pred             ccchhccCCChhheeeEEecCC
Confidence            53312 11     666666666

These proteins are found in fungi.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.01  E-value=6.3  Score=41.52  Aligned_cols=152  Identities=9%  Similarity=0.104  Sum_probs=89.0

Q ss_pred             CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342          402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN  481 (701)
Q Consensus       402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~  481 (701)
                      .|.+..+.|...|.+.-|.+.-.. ..  ..+++.. ...++|.++.||+|.+.+++--.+.+|.+++....        
T Consensus        31 DDaNkqlfavrSggatgvvvkgpn-dD--VpiSfdm-~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d--------   98 (657)
T KOG2377|consen   31 DDANKQLFAVRSGGATGVVVKGPN-DD--VPISFDM-DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD--------   98 (657)
T ss_pred             ccCcceEEEEecCCeeEEEEeCCC-CC--CCceeee-cCCCceeEEEeccCcceEEEEecCceEEEEecCCC--------
Confidence            344444444444666667665221 11  1112111 24579999999999999999889999999976332        


Q ss_pred             cceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCC-CcEEEEecCCCCCeEEEEEcCCC--
Q 005342          482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANPPPIATYFILLPQD--  557 (701)
Q Consensus       482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~spdg--  557 (701)
                                 ..+.....-.+.....|..+.|+ ..-++..++..+-+|-... ...++..+.+.-.|.-..|.++.  
T Consensus        99 -----------~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v  167 (657)
T KOG2377|consen   99 -----------NSQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAV  167 (657)
T ss_pred             -----------chhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccce
Confidence                       11111000001223458888998 7667777765566665433 23455556677888888999988  


Q ss_pred             -eEEEEeCCCcEEEEeCCCC
Q 005342          558 -LFAFGFDDSSILVHCPCTK  576 (701)
Q Consensus       558 -~l~~gs~dg~I~iwd~~~~  576 (701)
                       +++++-..+++-=+.++++
T Consensus       168 ~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  168 ILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EeeeccccccccccEEEeec
Confidence             4444434444444444443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.60  E-value=5  Score=47.00  Aligned_cols=124  Identities=16%  Similarity=0.094  Sum_probs=81.3

Q ss_pred             CCeEEEEeCCCCcEEE-----EecCC------CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-eEEeecCCCCCe
Q 005342          524 GGKISIFSLETFQTLA-----TFANP------PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRI  589 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~-----~~~~~------~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~~~V  589 (701)
                      +-.|..||+++...-.     .+..+      .....++.|.|.=  ..++...|+.|++.-+.... .+..+. -...+
T Consensus       123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~  201 (1405)
T KOG3630|consen  123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQ  201 (1405)
T ss_pred             CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccce
Confidence            3478999987543211     11111      2234678888876  77888899999888765332 223332 34568


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          590 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       590 ~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      ++++|+|.|+.++.|-..|++.-|-..-..+   ..+...+...   ...|.+|.|-....++++
T Consensus       202 Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~~ip~Pp~~e---~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  202 TAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---SEIPEPPVEE---NYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             eeEEeccccceeeEecCCCeEEEeeccccee---ecccCCCcCC---CcceeEEEEecceeEEEE
Confidence            9999999999999999999999987665321   1122111111   178999999988888776

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.18  E-value=1.5  Score=29.92  Aligned_cols=30  Identities=20%  Similarity=0.401  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCC---CEEEEE-ecCeEEEEECCC
Q 005342          638 TIVNHIQFHPDQ---IHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       638 ~~v~~v~~spdg---~~l~sg-~Dg~I~iwd~~~  667 (701)
                      +.|.++.|||++   .+|+.+ +-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358899999864   477777 788999999985

It contains a characteristic DLL sequence motif.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.14  E-value=6  Score=42.24  Aligned_cols=131  Identities=15%  Similarity=0.216  Sum_probs=85.7

Q ss_pred             CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--------eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEE
Q 005342          524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD--------LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAY  594 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--------~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~  594 (701)
                      ...++-.|++.|+.+.....+...  -+.+.|+.        .-++|-.+..|.-.|.+- |..+..-. ....++.-.|
T Consensus       489 ~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~F  565 (776)
T COG5167         489 RDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKF  565 (776)
T ss_pred             cccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhccccccc
Confidence            467888899999988888766554  46677754        345677777787778764 32222111 1111222222


Q ss_pred             e----cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342          595 S----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP  666 (701)
Q Consensus       595 s----pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~  666 (701)
                      |    ....++|.+|..|-|++||.-.-+  ....+.    +-.   ..|..|..+.+|+++++.....+-+.|+.
T Consensus       566 ss~~tTesGyIa~as~kGDirLyDRig~r--AKtalP----~lG---~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         566 SSGMTTESGYIAAASRKGDIRLYDRIGKR--AKTALP----GLG---DAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             cccccccCceEEEecCCCceeeehhhcch--hhhcCc----ccc---cceeeeEeecCCcEEEEeecceEEEEecc
Confidence            2    234589999999999999976521  111222    222   78899999999999998777788888874

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.91  E-value=15  Score=32.18  Aligned_cols=115  Identities=12%  Similarity=0.095  Sum_probs=67.8

Q ss_pred             EEEcCCCCeEEEEcCCCcEEEEeccccCC-----CCceeEeecCCCCCCCCEEEEEEec----C-CCEEEEEECCCcEEE
Q 005342          398 STSLPDADSAVCAKSLEKSVNLKLQLINE-----PSECRTLLLPDNSFGGRVVRLIYSH----S-GDFLVALTQTATHKL  467 (701)
Q Consensus       398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~-----~~~~~~l~~~~~~~~~~v~~l~~sp----d-g~~l~s~s~dg~i~v  467 (701)
                      -.|......|++++.-|+|.|.+......     ......+.+     ...|++++-.+    + ...|+. +....+..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-----n~~italaaG~l~~~~~~D~Lli-Gt~t~lla   77 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-----NQEITALAAGRLKPDDGRDCLLI-GTQTSLLA   77 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-----CCceEEEEEEecCCCCCcCEEEE-eccceEEE
Confidence            34666666788888889999998763321     112233333     46677776554    2 334444 44567778


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec------CCEEEEEeCCeEEEEeCCCCcEEEEe
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSASGGKISIFSLETFQTLATF  541 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s------~~~l~s~sdg~I~iwd~~~~~~~~~~  541 (701)
                      ||+..+.                    .+..    +.-...|.++.+-      ...+++|++..|.-||.+..+..++.
T Consensus        78 YDV~~N~--------------------d~Fy----ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   78 YDVENNS--------------------DLFY----KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             EEcccCc--------------------hhhh----hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            8763321                    1222    2334567777664      45666676888888888665555554


Q ss_pred             c
Q 005342          542 A  542 (701)
Q Consensus       542 ~  542 (701)
                      .
T Consensus       134 t  134 (136)
T PF14781_consen  134 T  134 (136)
T ss_pred             c
Confidence            3

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.83  E-value=4.6  Score=43.19  Aligned_cols=76  Identities=13%  Similarity=0.066  Sum_probs=55.2

Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe----cC----------------CC-EEE
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS----LS----------------LN-VLV  602 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s----pd----------------g~-~l~  602 (701)
                      .-.+.+++.+|++ +.|+...=|.|.++|+.++..++.++|..+.  .+.|-    +.                .. +++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            3457899999999 8888777789999999999999999886542  11221    11                11 334


Q ss_pred             EEeCCCeEEEEECCCCeeee
Q 005342          603 SSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       603 s~s~D~~I~vwd~~~g~~~~  622 (701)
                      .+-.-|.|-||+++.|.++.
T Consensus       385 yaprRg~lEvW~~~~g~Rv~  404 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVA  404 (415)
T ss_pred             EeccCCeEEEEecCCCCEEE
Confidence            56778899999999886443

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=88.79  E-value=0.22  Score=31.94  Aligned_cols=30  Identities=30%  Similarity=0.502  Sum_probs=26.6

Q ss_pred             cchhhhhhHhhhccchhhhhhhhhhccCcc
Q 005342          195 KEELIYLIHQFLNEEEFKETLHKLEQETRV  224 (701)
Q Consensus       195 ~~~~~~l~~q~l~~~~~~~~~~~l~~es~~  224 (701)
                      +.++.+++.|+|...||.+++..+++|++.
T Consensus         3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~   32 (34)
T smart00667        3 RSELNRLILEYLLRNGYEETAETLQKESGL   32 (34)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence            456778899999999999999999999876

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PRK13684 Ycf48-like protein; Provisional

Probab=88.76  E-value=33  Score=35.84  Aligned_cols=121  Identities=6%  Similarity=-0.048  Sum_probs=69.7

Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEE-EeCCCCc-eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILV-HCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~i-wd~~~~~-~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      ...+..+.+.|++ ++++|. .|.++. +| ..++ ....-.+-...++++.+.|+++.++.+ ..|.+++=....|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            4567899999999 666554 455543 22 2222 222222334578999999999876655 4577654334444211


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeee
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l  674 (701)
                        ..+. .+...  ....+.++.+.|++..+++|.+|.+. .....|+.-+..
T Consensus       249 --~~~~-~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~  295 (334)
T PRK13684        249 --SKPI-IPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKD  295 (334)
T ss_pred             --cccc-CCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeEC
Confidence              1111 11000  01457889999999988888888665 444555544433

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.72  E-value=3.9  Score=39.80  Aligned_cols=73  Identities=14%  Similarity=0.142  Sum_probs=51.3

Q ss_pred             CCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEe-------c-------CCCCCeEEEEEcCCC-eEEEEeCCCcEEE
Q 005342          507 DSISCFALRGSHLFSAS-GGKISIFSLETFQTLATF-------A-------NPPPIATYFILLPQD-LFAFGFDDSSILV  570 (701)
Q Consensus       507 ~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~-------~-------~~~~~i~~l~~spdg-~l~~gs~dg~I~i  570 (701)
                      .++..+...++++++.+ +|.+++||+.+++.+..-       .       .....|..+.++.+| -+++ ..+|..+.
T Consensus        13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~   91 (219)
T PF07569_consen   13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYS   91 (219)
T ss_pred             CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEE
Confidence            35555665677877777 999999999988754322       1       245678889999888 4444 34578899


Q ss_pred             EeCCCCceEE
Q 005342          571 HCPCTKKTKA  580 (701)
Q Consensus       571 wd~~~~~~~~  580 (701)
                      ||..-+..+.
T Consensus        92 y~~~L~~W~~  101 (219)
T PF07569_consen   92 YSPDLGCWIR  101 (219)
T ss_pred             eccccceeEE
Confidence            9976655544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.62  E-value=20  Score=40.99  Aligned_cols=143  Identities=14%  Similarity=0.151  Sum_probs=86.3

Q ss_pred             CCEEEEEeCCeEEEEeCCCCcEE------EEec----------------CCCCCeEEEEEcCCC---eEEEEeCCCcEEE
Q 005342          516 GSHLFSASGGKISIFSLETFQTL------ATFA----------------NPPPIATYFILLPQD---LFAFGFDDSSILV  570 (701)
Q Consensus       516 ~~~l~s~sdg~I~iwd~~~~~~~------~~~~----------------~~~~~i~~l~~spdg---~l~~gs~dg~I~i  570 (701)
                      .++++++..+.|.||+.......      ..+.                .....|+.+.+..=|   .|+++.+||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            67788888999999997532221      1110                012345556555434   8899999999999


Q ss_pred             EeCCC-------C----c---------eEEeecCCCCCeEEEEEe--cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          571 HCPCT-------K----K---------TKAKLKGHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       571 wd~~~-------~----~---------~~~~l~~h~~~V~~v~~s--pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      |.+++       .    .         +-..+. -...+++++++  ...++||.++....|.||-........ ....+
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~-~~~~s  206 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF-YHVPS  206 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccc-ccccc
Confidence            97532       0    0         111122 22367889998  778889988888888888665521000 00001


Q ss_pred             ccCCCCCCCCCeEEEEEcCCC-----C-EEEE-EecCeEEEEEC
Q 005342          629 FQTGLVPETTIVNHIQFHPDQ-----I-HLLS-IHEGQIDVYEA  665 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg-----~-~l~s-g~Dg~I~iwd~  665 (701)
                      ..  +   ...|.+|+|-++.     . .+++ +-.|.+.+|++
T Consensus       207 ~~--~---~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQ--H---SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cc--c---ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            11  1   2668899997753     2 4444 35888887777

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.56  E-value=0.077  Score=55.67  Aligned_cols=142  Identities=14%  Similarity=0.114  Sum_probs=93.7

Q ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE
Q 005342          442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  519 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l  519 (701)
                      .......|-|.+.-++.++.+..+..||-                      .|+.+..   ....+...+++|+  +..+
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD~----------------------agq~~le---~n~tg~aldm~wDkegdvl   89 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYDK----------------------AGQVILE---LNPTGKALDMAWDKEGDVL   89 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhhh----------------------hcceecc---cCCchhHhhhhhccccchh
Confidence            33445567888877888888888888853                      2222211   1234555677787  5554


Q ss_pred             EEE-e-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec
Q 005342          520 FSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL  596 (701)
Q Consensus       520 ~s~-s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp  596 (701)
                      +.. . .+.+.+||+.+....+.-.+....-.-+.|++.+ .++.|...|.+.|++..+.+.+-..--|...+++++|.+
T Consensus        90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            443 3 7999999997643222111222223347889988 999999999999999887666554433888999999999


Q ss_pred             CCCEEEEEeCCCe
Q 005342          597 SLNVLVSSGADAQ  609 (701)
Q Consensus       597 dg~~l~s~s~D~~  609 (701)
                      .+. .+.++.|..
T Consensus       170 Ed~-vil~dcd~~  181 (615)
T KOG2247|consen  170 EDY-VILCDCDNT  181 (615)
T ss_pred             cce-eeecCcHHH
Confidence            764 445555543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.47  E-value=42  Score=38.07  Aligned_cols=38  Identities=13%  Similarity=0.101  Sum_probs=30.9

Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342          586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       586 ~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                      .+.+..+..||++++|+-=..+|.|.+-++...+..+.
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce  253 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCE  253 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhc
Confidence            35678899999999999999999999988887654443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=88.36  E-value=1.6  Score=29.89  Aligned_cols=31  Identities=13%  Similarity=0.270  Sum_probs=26.6

Q ss_pred             CCeEEEEEecC-C--CEEEEEeCCCeEEEEECCC
Q 005342          587 NRITCLAYSLS-L--NVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       587 ~~V~~v~~spd-g--~~l~s~s~D~~I~vwd~~~  617 (701)
                      +.|.++.|||+ +  .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999984 4  5899898999999999996

It contains a characteristic DLL sequence motif.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.28  E-value=20  Score=38.06  Aligned_cols=105  Identities=10%  Similarity=-0.069  Sum_probs=67.3

Q ss_pred             CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC--CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCC-CCeEE
Q 005342          516 GSHLFSAS-GGKISIFSLETFQTLATFANPP--PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITC  591 (701)
Q Consensus       516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~--~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~  591 (701)
                      +..+..+. +|.|.-.|..++..+.......  ..+..-.+..+|.+++++.++.++.+|.++|+.+-...... -.+..
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            44455555 8999999999988776544221  22233333336688899999999999998998887766544 11111


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      -..-.++ .+..++.++.++..|..+|...
T Consensus       148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~  176 (370)
T COG1520         148 PPVVGDG-TVYVGTDDGHLYALNADTGTLK  176 (370)
T ss_pred             CcEEcCc-EEEEecCCCeEEEEEccCCcEE
Confidence            1222233 3333447899999999988654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.17  E-value=52  Score=37.35  Aligned_cols=39  Identities=10%  Similarity=0.080  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK  583 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~  583 (701)
                      .+.+..+++||+. +|+.-..+|.|.+-+++..+....+.
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            4667889999999 99999999999999988777666655

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=87.36  E-value=13  Score=36.64  Aligned_cols=146  Identities=16%  Similarity=0.196  Sum_probs=78.2

Q ss_pred             EEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCCC----CceEE---eecCCCCCeEEEEEe
Q 005342          527 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCT----KKTKA---KLKGHQNRITCLAYS  595 (701)
Q Consensus       527 I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~-dg--~I~iwd~~~----~~~~~---~l~~h~~~V~~v~~s  595 (701)
                      -.+||+.+++....-........+=++-||| ++.+|+. +|  .+++++..+    .....   .+. ...+--++.--
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence            4678988876433222222233344577899 7777765 33  588888654    11111   111 12233344455


Q ss_pred             cCCCEEEEEeCCC-eEEEEECCCC--eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceee
Q 005342          596 LSLNVLVSSGADA-QLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       596 pdg~~l~s~s~D~-~I~vwd~~~g--~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~  672 (701)
                      |||+.|+.|+.+. +.-+|.-+..  .......+........  ..---.+...|||++++.+..+. .|||..+.+.++
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~--~nlYP~~~llPdG~lFi~an~~s-~i~d~~~n~v~~  203 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLP--NNLYPFVHLLPDGNLFIFANRGS-IIYDYKTNTVVR  203 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCc--cccCceEEEcCCCCEEEEEcCCc-EEEeCCCCeEEe
Confidence            8999888887764 3445544221  1111111110100000  02223566789999998875543 478998888878


Q ss_pred             eeee
Q 005342          673 QVLL  676 (701)
Q Consensus       673 ~l~~  676 (701)
                      .++.
T Consensus       204 ~lP~  207 (243)
T PF07250_consen  204 TLPD  207 (243)
T ss_pred             eCCC
Confidence            7776

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.05  E-value=21  Score=39.36  Aligned_cols=148  Identities=10%  Similarity=-0.056  Sum_probs=73.9

Q ss_pred             CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC---CeEEEEEecCCC
Q 005342          524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN---RITCLAYSLSLN  599 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~---~V~~v~~spdg~  599 (701)
                      .+...++|. +|..+..+.........+..-++| +++...  +.++.+|+. |+.+..+.--.+   .=..+..-|+|+
T Consensus       127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn  202 (477)
T PF05935_consen  127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN  202 (477)
T ss_dssp             EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred             CceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC
Confidence            466777776 566655554322222226677888 554433  788899974 666554432111   113566779999


Q ss_pred             EEEEEeC-------------CCeEEEEECCCCeeeeeeeeeeccCCCC------------------CCCCCeEEEEEcC-
Q 005342          600 VLVSSGA-------------DAQLCVWDAVGWKKLCSKFLHSFQTGLV------------------PETTIVNHIQFHP-  647 (701)
Q Consensus       600 ~l~s~s~-------------D~~I~vwd~~~g~~~~~~~l~~~~~~~~------------------~~~~~v~~v~~sp-  647 (701)
                      +|+.+..             ...|..+| .+|+.+....+..+.....                  ..=..++++.+.| 
T Consensus       203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~  281 (477)
T PF05935_consen  203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS  281 (477)
T ss_dssp             EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred             EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence            8887761             22466666 6776544322221110000                  0002379999999 


Q ss_pred             CCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          648 DQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       648 dg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ++.+++++ .-..|...|..+++..-.+-.
T Consensus       282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~  311 (477)
T PF05935_consen  282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGP  311 (477)
T ss_dssp             TTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred             CCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence            66777777 456888889888887766544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=86.95  E-value=36  Score=34.16  Aligned_cols=152  Identities=13%  Similarity=0.074  Sum_probs=90.9

Q ss_pred             CCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecC--CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCC---ceE
Q 005342          506 KDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQDLFAFGFDDSSILVHCPCTK---KTK  579 (701)
Q Consensus       506 ~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~--~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~---~~~  579 (701)
                      .+-+.++.+++++...+. +.-+++.|+.+......+..  ..+-..++..+.+ +..++..|.-..+.|+.+.   .+.
T Consensus        86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn-~aYVadlddgfLivdvsdpssP~la  164 (370)
T COG5276          86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGN-YAYVADLDDGFLIVDVSDPSSPQLA  164 (370)
T ss_pred             hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCC-EEEEeeccCcEEEEECCCCCCceee
Confidence            345667788888888888 78899999987654332221  1233355555433 5666665556667787654   333


Q ss_pred             EeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCe
Q 005342          580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQ  659 (701)
Q Consensus       580 ~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~  659 (701)
                      ..+....+.-..++.|  |++-..+..|+-+.+-|+....  ....+.....+     ..+.++..+++--+++....| 
T Consensus       165 grya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~--sPvli~~~n~g-----~g~~sv~vsdnr~y~vvy~eg-  234 (370)
T COG5276         165 GRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPH--SPVLIGSYNTG-----PGTYSVSVSDNRAYLVVYDEG-  234 (370)
T ss_pred             eeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCC--CCeEEEEEecC-----CceEEEEecCCeeEEEEcccc-
Confidence            4444444444666775  5566667788899999998742  11222212111     468888888877666654443 


Q ss_pred             EEEEECCCC
Q 005342          660 IDVYEAPTL  668 (701)
Q Consensus       660 I~iwd~~~g  668 (701)
                      +-+-|..+-
T Consensus       235 vlivd~s~~  243 (370)
T COG5276         235 VLIVDVSGP  243 (370)
T ss_pred             eEEEecCCC
Confidence            445555433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=86.90  E-value=14  Score=38.58  Aligned_cols=106  Identities=12%  Similarity=0.078  Sum_probs=56.4

Q ss_pred             CeEEEEEcCCCeEEEEeCCCcEEEEeCCCCce---EEee----cCCCCCeEEEEEecC----CCEEEEEeC--------C
Q 005342          547 IATYFILLPQDLFAFGFDDSSILVHCPCTKKT---KAKL----KGHQNRITCLAYSLS----LNVLVSSGA--------D  607 (701)
Q Consensus       547 ~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~---~~~l----~~h~~~V~~v~~spd----g~~l~s~s~--------D  607 (701)
                      ..+.|+|.|||.++++...|.|++++ ..+..   +..+    .........++++|+    +.+.++.+.        +
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35789999999334456799999999 44443   2222    224457899999994    333333331        1


Q ss_pred             CeEEEEECCCC--eeeeeee-eeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          608 AQLCVWDAVGW--KKLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       608 ~~I~vwd~~~g--~~~~~~~-l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      ..|.-|....+  .....+. +..++. .......-..+.|.|||.+.++
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~-~~~~~H~g~~l~fgpDG~LYvs  130 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPD-TSSGNHNGGGLAFGPDGKLYVS  130 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES--CSSSS-EEEEEE-TTSEEEEE
T ss_pred             eeeEEEeccCCccccccceEEEEEeCC-CCCCCCCCccccCCCCCcEEEE
Confidence            34555555544  1111122 222222 0001145577999999976665

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK13684 Ycf48-like protein; Provisional

Probab=86.65  E-value=44  Score=34.92  Aligned_cols=150  Identities=14%  Similarity=0.074  Sum_probs=86.0

Q ss_pred             CCCeEEEEec--CCEEEEEeCCeEEEE-eCCCCcEEE-EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE
Q 005342          506 KDSISCFALR--GSHLFSASGGKISIF-SLETFQTLA-TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA  580 (701)
Q Consensus       506 ~~~v~~l~~s--~~~l~s~sdg~I~iw-d~~~~~~~~-~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~  580 (701)
                      ...+.++.+.  +.+++++..|.+..- |- .++.-. ...+....++++.+.+++ .+++| ..|.+++=....+..-.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence            4567788887  445555557766542 22 222212 222345678999999999 66655 55766543334443322


Q ss_pred             eecC----CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe
Q 005342          581 KLKG----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH  656 (701)
Q Consensus       581 ~l~~----h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~  656 (701)
                      ....    -...+.++++.|++..++ ++.+|.|.. ....|+.-  ..+. ...+-.   ...+.+.|..+++.+++|.
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW--~~~~-~~~~~~---~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTW--EKDP-VGEEVP---SNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCC--eECC-cCCCCC---cceEEEEEeCCCceEEECC
Confidence            1111    123578889999887655 555676653 34444311  1111 001111   4678888888889999999


Q ss_pred             cCeEEEEEC
Q 005342          657 EGQIDVYEA  665 (701)
Q Consensus       657 Dg~I~iwd~  665 (701)
                      .|.|--|+-
T Consensus       322 ~G~il~~~~  330 (334)
T PRK13684        322 RGVLLRYVG  330 (334)
T ss_pred             CceEEEecC
Confidence            998877763

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=86.49  E-value=0.44  Score=53.75  Aligned_cols=101  Identities=16%  Similarity=0.282  Sum_probs=58.7

Q ss_pred             EEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE-----------EEcCCC-eEEEEeCCCcEEEEeC-----CCCceE
Q 005342          518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYF-----------ILLPQD-LFAFGFDDSSILVHCP-----CTKKTK  579 (701)
Q Consensus       518 ~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l-----------~~spdg-~l~~gs~dg~I~iwd~-----~~~~~~  579 (701)
                      ++..+. +++|++.++.+... ..+.+|...++.+           ..|||| .++..+.||.+..|-+     ..-.+.
T Consensus       197 ~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rcl  275 (1283)
T KOG1916|consen  197 YICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCL  275 (1283)
T ss_pred             eeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhh
Confidence            444444 68888877754322 3344465544333           368999 8888999996655543     344556


Q ss_pred             EeecCCCC-CeEEEEEecC-------C--CEEEEEeC-CCeEEEEECCCCe
Q 005342          580 AKLKGHQN-RITCLAYSLS-------L--NVLVSSGA-DAQLCVWDAVGWK  619 (701)
Q Consensus       580 ~~l~~h~~-~V~~v~~spd-------g--~~l~s~s~-D~~I~vwd~~~g~  619 (701)
                      +.++.|.+ +-.|.-++.+       +  .+++++++ ...+++|.-..+.
T Consensus       276 hewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~  326 (1283)
T KOG1916|consen  276 HEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ  326 (1283)
T ss_pred             hccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence            66777764 3222223221       1  24555555 4468899887764

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.32  E-value=45  Score=35.72  Aligned_cols=147  Identities=10%  Similarity=0.036  Sum_probs=0.0

Q ss_pred             CCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcE-EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe
Q 005342          506 KDSISCFALR--GSHLFSASGGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK  581 (701)
Q Consensus       506 ~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~  581 (701)
                      .+....+..+  |.+++.+..|.+..=+-..... ...-......++.+.+.+++ .++++...+.+.--|-.....+..
T Consensus       238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~  317 (398)
T PLN00033        238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFD  317 (398)
T ss_pred             ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccc


Q ss_pred             ecCCCCC-----eEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee---eeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342          582 LKGHQNR-----ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK---FLHSFQTGLVPETTIVNHIQFHPDQIHLL  653 (701)
Q Consensus       582 l~~h~~~-----V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~---~l~~~~~~~~~~~~~v~~v~~spdg~~l~  653 (701)
                      +......     +.++.|.+++..++ ++..|.+....-....-....   .+.          ...+.+.|.++++.++
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~D~G~tW~~~~~~~~~~----------~~ly~v~f~~~~~g~~  386 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRSTDGGKSWKRDKGADNIA----------ANLYSVKFFDDKKGFV  386 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeCCCCcceeEccccCCCC----------cceeEEEEcCCCceEE


Q ss_pred             EEecCeEEEE
Q 005342          654 SIHEGQIDVY  663 (701)
Q Consensus       654 sg~Dg~I~iw  663 (701)
                      +|.+|.|--|
T Consensus       387 ~G~~G~il~~  396 (398)
T PLN00033        387 LGNDGVLLRY  396 (398)
T ss_pred             EeCCcEEEEe

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=85.96  E-value=26  Score=38.58  Aligned_cols=110  Identities=13%  Similarity=0.202  Sum_probs=65.8

Q ss_pred             CCeEEEEec-----C--CEEEEEeCCeEEEEeCC-----CCcEEEEecC---CCCC--eEEEEEcCCC-eEEEEeCCCcE
Q 005342          507 DSISCFALR-----G--SHLFSASGGKISIFSLE-----TFQTLATFAN---PPPI--ATYFILLPQD-LFAFGFDDSSI  568 (701)
Q Consensus       507 ~~v~~l~~s-----~--~~l~s~sdg~I~iwd~~-----~~~~~~~~~~---~~~~--i~~l~~spdg-~l~~gs~dg~I  568 (701)
                      ..|..++|.     +  .+||+-....|.+|-+.     +++.+..-..   ..-+  -..+.|+|.. .+++-+....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            458888888     2  34555558999999875     2222211111   1112  2567899999 55554444333


Q ss_pred             EEEeCCC--CceEEeecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCC
Q 005342          569 LVHCPCT--KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG  617 (701)
Q Consensus       569 ~iwd~~~--~~~~~~l~~h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~  617 (701)
                      .+++++.  ......++ ..+.|.|.+|.+||+.|+.+- ..=.-+|||-..
T Consensus       137 V~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            3445443  33333444 457899999999999776543 334678998654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.45  E-value=33  Score=39.19  Aligned_cols=108  Identities=13%  Similarity=0.164  Sum_probs=67.2

Q ss_pred             CeEEEEec----CCEEEEEe-CCeEEEEeCCC-------C----c---------EEEEecCCCCCeEEEEEc--CCC-eE
Q 005342          508 SISCFALR----GSHLFSAS-GGKISIFSLET-------F----Q---------TLATFANPPPIATYFILL--PQD-LF  559 (701)
Q Consensus       508 ~v~~l~~s----~~~l~s~s-dg~I~iwd~~~-------~----~---------~~~~~~~~~~~i~~l~~s--pdg-~l  559 (701)
                      .|+.+.+.    .+.|+.+. ||.|.+|.+++       .    .         +.-.+. ....+++++++  ... +|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            56666555    44566666 79999996521       1    0         011111 23467899998  666 88


Q ss_pred             EEEeCCCcEEEEeCCC--CceEE-eecCCCCCeEEEEEecCC---C---EEEEEeCCCeEEEEECC
Q 005342          560 AFGFDDSSILVHCPCT--KKTKA-KLKGHQNRITCLAYSLSL---N---VLVSSGADAQLCVWDAV  616 (701)
Q Consensus       560 ~~gs~dg~I~iwd~~~--~~~~~-~l~~h~~~V~~v~~spdg---~---~l~s~s~D~~I~vwd~~  616 (701)
                      |+++....|.||-...  .+... .-..|..-|-+|+|-++.   .   +|++++-.|.+.+|++.
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            9988888777765433  11111 001144568889887742   2   78889999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.12  E-value=2.8  Score=28.25  Aligned_cols=30  Identities=17%  Similarity=0.270  Sum_probs=24.5

Q ss_pred             CCCCEEEEE--ecCeEEEEECCCCceeeeeee
Q 005342          647 PDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       647 pdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      |++++|+++  .+++|.++|..+++.+..++.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            678877775  588999999999988887764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=85.06  E-value=0.13  Score=53.96  Aligned_cols=239  Identities=15%  Similarity=0.132  Sum_probs=130.9

Q ss_pred             EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEecCCCCc
Q 005342          397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-TQTATHKLWKWQSNKQ  475 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~~~~~~  475 (701)
                      ...|-|.+..++.++.+..+..||-.    ......+     ..++....++|..+|..++.. -..+.+.+||+.++.-
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~a----gq~~le~-----n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt  109 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKA----GQVILEL-----NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT  109 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhh----cceeccc-----CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence            45678888889999888889899875    2222221     135677888999988865544 4479999998744321


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI  552 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~  552 (701)
                                        .++-   ....+...  -+.|+  ...++.+. .|.+.+++..+.+.+-..-.|...+++++
T Consensus       110 ------------------qqLE---~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~a  166 (615)
T KOG2247|consen  110 ------------------QQLE---SGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIA  166 (615)
T ss_pred             ------------------HHHh---ccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEE
Confidence                              0110   10112111  25566  45566666 79999999887766555544888899999


Q ss_pred             EcCCCeEEEEeCCCcEEEEeCCCCceEEeec--CCCC--CeEEE---EEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342          553 LLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--GHQN--RITCL---AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF  625 (701)
Q Consensus       553 ~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~--~V~~v---~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~  625 (701)
                      +.+.++.+.++.|..+.+-... ++......  +...  ....+   .|..-|..+.+.-.. ++.+.=.+-.++.....
T Consensus       167 v~lEd~vil~dcd~~L~v~~qe-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsg-Kkhl~yak~nE~D~pva  244 (615)
T KOG2247|consen  167 VTLEDYVILCDCDNTLSVTTQE-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSG-KKHLMYAKYNELDEPVA  244 (615)
T ss_pred             ecccceeeecCcHHHHHHhhhc-cceeeeeeccCccchhhhheeeeeccccccceeeeeeec-HHHHHHHhhcCCCCccc
Confidence            9999877777777655543322 22222111  1000  00011   333344444432211 11111011000000111


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeee
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l  674 (701)
                      +. +..+.    +.+.++.|--||..+.--+-|.|..-.+.++++.+.+
T Consensus       245 l~-fq~~~----gni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaef  288 (615)
T KOG2247|consen  245 LQ-FQEKY----GNIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEF  288 (615)
T ss_pred             eE-eeecC----CceeEEEEeccccccccccceeEEEEeccchHHHHHH
Confidence            21 22232    6688888888876544324556666667777665443

>PRK10115 protease 2; Provisional

Probab=84.80  E-value=85  Score=36.51  Aligned_cols=195  Identities=10%  Similarity=-0.020  Sum_probs=92.2

Q ss_pred             EEEEcCCCCeEEEEcCC------CcEEEEeccccCCCCceeEeecCCCCCCCCEE-EEEEecCCCEEEEEEC---CCcEE
Q 005342          397 ESTSLPDADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVV-RLIYSHSGDFLVALTQ---TATHK  466 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~-~l~~spdg~~l~s~s~---dg~i~  466 (701)
                      .++|++|++.|+.+..+      ..|..+++.+.....  .. -+..  ...... ....+.|+++++..+.   ++.+.
T Consensus       176 ~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d--~l-v~~e--~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~  250 (686)
T PRK10115        176 SFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQD--EL-VYEE--KDDTFYVSLHKTTSKHYVVIHLASATTSEVL  250 (686)
T ss_pred             EEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHC--eE-EEee--CCCCEEEEEEEcCCCCEEEEEEECCccccEE
Confidence            58999999877766442      356667776321111  11 1111  112222 3334558887665544   35677


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe--C---CeEEEEeCC-CCcEEEE
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS--G---GKISIFSLE-TFQTLAT  540 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s--d---g~I~iwd~~-~~~~~~~  540 (701)
                      +++..                   ..++..... +.... .....+...+..+...+  +   ..|...++. .++. ..
T Consensus       251 l~~~~-------------------~~~~~~~~~-~~~~~-~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~  308 (686)
T PRK10115        251 LLDAE-------------------LADAEPFVF-LPRRK-DHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EE  308 (686)
T ss_pred             EEECc-------------------CCCCCceEE-EECCC-CCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccC-eE
Confidence            77531                   122221100 11111 22222221134433333  2   245445554 2222 23


Q ss_pred             ecCC-C-CCeEEEEEcCCCeEEEEeCCCc--EEEEeCCCCceEEeec-CCCCCeEEEEEe--cCCC-EEEEEeC---CCe
Q 005342          541 FANP-P-PIATYFILLPQDLFAFGFDDSS--ILVHCPCTKKTKAKLK-GHQNRITCLAYS--LSLN-VLVSSGA---DAQ  609 (701)
Q Consensus       541 ~~~~-~-~~i~~l~~spdg~l~~gs~dg~--I~iwd~~~~~~~~~l~-~h~~~V~~v~~s--pdg~-~l~s~s~---D~~  609 (701)
                      +..+ . ..+..+.+..+.++++...+|.  ++++|..++ .+..+. .....+..+.++  +++. ++++.+.   -+.
T Consensus       309 l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~  387 (686)
T PRK10115        309 LIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDT  387 (686)
T ss_pred             EECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCE
Confidence            3334 2 3677888873336777777775  555565433 334333 222233334445  3433 5544433   568


Q ss_pred             EEEEECCCCe
Q 005342          610 LCVWDAVGWK  619 (701)
Q Consensus       610 I~vwd~~~g~  619 (701)
                      ++.+|..+++
T Consensus       388 ~y~~d~~~~~  397 (686)
T PRK10115        388 LFELDMDTGE  397 (686)
T ss_pred             EEEEECCCCc
Confidence            9999998864

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=83.97  E-value=39  Score=38.05  Aligned_cols=66  Identities=20%  Similarity=0.242  Sum_probs=45.3

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  470 (701)
                      +.++.-+|.|+.+++++.||++++++..    +.+..++-    ....+-..+.|...|  ++++.+|..+.-|.-
T Consensus        17 ~~aiqshp~~~s~v~~~~d~si~lfn~~----~r~qski~----~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   17 TTAIQSHPGGQSFVLAHQDGSIILFNFI----PRRQSKIC----EEAKPKENLVFTNHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             eeeeeecCCCceEEEEecCCcEEEEeec----ccchhhhh----hhcCCccceeeeccc--eEEEeccchhheeec
Confidence            7788999999999999999999999986    22111110    012334456666555  677777777777754

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=83.49  E-value=70  Score=34.47  Aligned_cols=143  Identities=15%  Similarity=0.110  Sum_probs=84.7

Q ss_pred             CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-------CCEEEEEeCC
Q 005342          453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSASGG  525 (701)
Q Consensus       453 g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-------~~~l~s~sdg  525 (701)
                      ...|++||.+|.++||+...+..              ++. ..++.    ..-..+|..+..-       ...||+-.-.
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~--------------~~~-~lllE----~~l~~PILqv~~G~F~s~~~~~~LaVLhP~   97 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEF--------------QPE-DLLLE----TQLKDPILQVECGKFVSGSEDLQLAVLHPR   97 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCC--------------CCc-cEEEE----EecCCcEEEEEeccccCCCCcceEEEecCC
Confidence            45899999999999997633321              111 11222    1234556555543       2345554466


Q ss_pred             eEEEEeCCC--Cc-------EEEEecCC--CCCeEEEEEcC----CC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCC
Q 005342          526 KISIFSLET--FQ-------TLATFANP--PPIATYFILLP----QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR  588 (701)
Q Consensus       526 ~I~iwd~~~--~~-------~~~~~~~~--~~~i~~l~~sp----dg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~  588 (701)
                      .+.+|.+..  |.       .+..+..|  .....+++..|    .|  +|.+=+.||.+.+|+-+.....+.+.+ ---
T Consensus        98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll  176 (418)
T PF14727_consen   98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL  176 (418)
T ss_pred             EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence            777777521  11       11222222  22334455443    32  889999999999999766544455544 222


Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342          589 ITCLAYSLSLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       589 V~~v~~spdg~~l~s~s~D~~I~vwd~  615 (701)
                      ...+++.|....+++++.+..+.-|..
T Consensus       177 PgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  177 PGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             CcCeEEeecCCEEEEecCceeEEEecH
Confidence            345688888888999998888888875

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=82.64  E-value=50  Score=35.69  Aligned_cols=100  Identities=11%  Similarity=0.010  Sum_probs=62.9

Q ss_pred             CEEEEEeCCeEEEEeCCC-CcEEEEec----CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEE
Q 005342          517 SHLFSASGGKISIFSLET-FQTLATFA----NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC  591 (701)
Q Consensus       517 ~~l~s~sdg~I~iwd~~~-~~~~~~~~----~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~  591 (701)
                      +.|+.-++..|.-.|.+- |..+....    .......+..-..+|+||+|+..|.|++||.-.-.....+.+-...|..
T Consensus       529 qtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~  608 (776)
T COG5167         529 QTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKH  608 (776)
T ss_pred             ceEEeecccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceee
Confidence            345555566666666442 32222111    1122334444455559999999999999995444444456666678999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          592 LAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       592 v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +..+.+|+++++.+. ..+-+-|++-
T Consensus       609 idvta~Gk~ilaTCk-~yllL~d~~i  633 (776)
T COG5167         609 IDVTANGKHILATCK-NYLLLTDVPI  633 (776)
T ss_pred             eEeecCCcEEEEeec-ceEEEEeccc
Confidence            999999998776554 5677777653

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=82.41  E-value=55  Score=32.56  Aligned_cols=233  Identities=12%  Similarity=0.092  Sum_probs=128.8

Q ss_pred             EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342          397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  476 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  476 (701)
                      .++-.|||..-.++...+.+---|..    +++.....+..   ...-..+..-|||..-++-+.. -|.-         
T Consensus        66 dvapapdG~VWft~qg~gaiGhLdP~----tGev~~ypLg~---Ga~Phgiv~gpdg~~Witd~~~-aI~R---------  128 (353)
T COG4257          66 DVAPAPDGAVWFTAQGTGAIGHLDPA----TGEVETYPLGS---GASPHGIVVGPDGSAWITDTGL-AIGR---------  128 (353)
T ss_pred             ccccCCCCceEEecCccccceecCCC----CCceEEEecCC---CCCCceEEECCCCCeeEecCcc-eeEE---------
Confidence            56778999988888888888877877    77766655532   3344556677777755543332 2222         


Q ss_pred             ccccccceeeEEeeCCCCeEEeecccCCC-CCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCC-CCCeEEEE
Q 005342          477 LEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANP-PPIATYFI  552 (701)
Q Consensus       477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~-~~~i~~l~  552 (701)
                                  +|+++.......+...| ........|+  |+.-.++..|.---.|-.+ ..+..+... ...-+.|+
T Consensus       129 ------------~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~  195 (353)
T COG4257         129 ------------LDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGIC  195 (353)
T ss_pred             ------------ecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceE
Confidence                        25555554433233233 3355666777  6666666532211222211 233344322 23457889


Q ss_pred             EcCCC-eEEEEeCCCcEEEEeCCCCceEEeec---CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      ..||| .-++...+..|-..|..++.. ..+.   +....-..+--+|.|..-+|....+.+.-+|.....-+ ..+   
T Consensus       196 atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~-eyp---  270 (353)
T COG4257         196 ATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI-EYP---  270 (353)
T ss_pred             ECCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccce-eee---
Confidence            99999 666666677777778776622 2222   11223344445677887777777788888887763211 112   


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCC
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL  668 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g  668 (701)
                      ++...    ..-.++.....++.-.+ ...|.|.-+|.++.
T Consensus       271 LPgs~----arpys~rVD~~grVW~sea~agai~rfdpeta  307 (353)
T COG4257         271 LPGSK----ARPYSMRVDRHGRVWLSEADAGAIGRFDPETA  307 (353)
T ss_pred             CCCCC----CCcceeeeccCCcEEeeccccCceeecCcccc
Confidence            22222    33345555555554444 24555666665443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=82.34  E-value=40  Score=32.34  Aligned_cols=150  Identities=16%  Similarity=0.179  Sum_probs=84.8

Q ss_pred             eEEEEecC-CEEEE-EeCCeEEEEeCC--CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC------cEEEE---eCC
Q 005342          509 ISCFALRG-SHLFS-ASGGKISIFSLE--TFQTLATFANPPPIATYFILLPQD-LFAFGFDDS------SILVH---CPC  574 (701)
Q Consensus       509 v~~l~~s~-~~l~s-~sdg~I~iwd~~--~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg------~I~iw---d~~  574 (701)
                      ...++.+| +.|.. ++.+.|.+|++.  ..+...+|. .-+.|..+.++..| ++++-=++.      .+|+|   ...
T Consensus        20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~   98 (215)
T PF14761_consen   20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ   98 (215)
T ss_pred             cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence            33444454 55544 448899999987  334666776 34788999999999 888754332      44553   222


Q ss_pred             --CCceEE-eecCC---------------------CCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeee--eeeee
Q 005342          575 --TKKTKA-KLKGH---------------------QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLC--SKFLH  627 (701)
Q Consensus       575 --~~~~~~-~l~~h---------------------~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~--~~~l~  627 (701)
                        ....+. .+-||                     ..++.+++-.| .|++++ |+ ++++.+|.++.+....  ...+.
T Consensus        99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lD  176 (215)
T PF14761_consen   99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLD  176 (215)
T ss_pred             cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEe
Confidence              112221 22222                     23566777777 677665 33 4689999887743210  01111


Q ss_pred             ---eccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342          628 ---SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  665 (701)
Q Consensus       628 ---~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~  665 (701)
                         .+..++..  .....+++.  +.++|.-++..+++..+
T Consensus       177 Fe~~l~~~~~~--~~p~~v~ic--~~yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  177 FERSLIDHIDN--FKPTQVAIC--EGYIAVMSDLEVLVLKL  213 (215)
T ss_pred             chhhhhheecC--ceEEEEEEE--eeEEEEecCCEEEEEEE
Confidence               01112210  224455554  56777777777777765

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.78  E-value=10  Score=35.41  Aligned_cols=31  Identities=19%  Similarity=0.313  Sum_probs=26.3

Q ss_pred             CCeEEEEEecCC------CEEEEEeCCCeEEEEECCC
Q 005342          587 NRITCLAYSLSL------NVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       587 ~~V~~v~~spdg------~~l~s~s~D~~I~vwd~~~  617 (701)
                      ..|.+++|||-|      .+||+.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999943      4889999999999998775

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=80.12  E-value=1.1e+02  Score=36.99  Aligned_cols=114  Identities=16%  Similarity=0.075  Sum_probs=65.8

Q ss_pred             CCCCCCeEEEEecCCEEEEEeCCeEEEEeCCC-CcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceE
Q 005342          503 ADPKDSISCFALRGSHLFSASGGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTK  579 (701)
Q Consensus       503 ~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~  579 (701)
                      ...+++|..++--..+++++.+..|.+|+++. ...+..-- -.-++.-....--. +|+.|.--..|.+...... ..+
T Consensus      1094 eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligVaF-iD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rl 1172 (1366)
T KOG1896|consen 1094 EEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGVAF-IDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRL 1172 (1366)
T ss_pred             hhcccceEEEEEeccEEEEccCcEEEEEEeccCCcceeeEE-eccceeEEehhhhhhheehhhhhhceEEEEEccCceEE
Confidence            45567787665556678888889999999943 33322110 12222222222223 6666666666666544332 222


Q ss_pred             EeecC--CCCCeEEEEEecCCC--EEEEEeCCCeEEEEECCC
Q 005342          580 AKLKG--HQNRITCLAYSLSLN--VLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       580 ~~l~~--h~~~V~~v~~spdg~--~l~s~s~D~~I~vwd~~~  617 (701)
                      ..+.-  ..-.+.++.|--||.  +++++..|+.|.++-...
T Consensus      1173 sL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1173 SLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred             EEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence            22221  122577888877776  677888899999986553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	701
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.98
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.68
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.61
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.59
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.57
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.51
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.48
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.48
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.47
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.46
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.46
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.43
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.43
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.42
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.42
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.39
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.37
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.36
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.33
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.3
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.3
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.3
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.25
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.24
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.24
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.24
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.2
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.18
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.18
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.17
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.17
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.11
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.1
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.08
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.07
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.05
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.04
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.01
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.97
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.91
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.89
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.88
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.87
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.85
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.85
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.85
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.82
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.81
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.78
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.78
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.76
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.76
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.74
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.69
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.68
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.67
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.66
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.65
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.65
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.61
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.61
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.58
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.58
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.56
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.56
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.52
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.51
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.49
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.47
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.42
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.41
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.38
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.31
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.26
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.24
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.22
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.22
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.22
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.19
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.18
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.16
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.16
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.14
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.02
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.96
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.95
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.94
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.89
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.85
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.78
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.76
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.69
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.69
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.68
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.64
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.58
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.58
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.56
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.53
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.36
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.36
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.22
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.22
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.21
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.18
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.15
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.13
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.08
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.07
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.02
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.01
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.99
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.89
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.86
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.8
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.8
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.73
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.66
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.58
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.51
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.45
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.42
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.36
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.25
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.2
3ott_A	758	Two-component system sensor histidine kinase; beta	96.2
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.12
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.08
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.07
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.92
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.78
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	95.6
3ott_A	758	Two-component system sensor histidine kinase; beta	95.57
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.46
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	95.41
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.4
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.34
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.17
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.14
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.47
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.45
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.34
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.33
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.32
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.27
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.12
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.81
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.8
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.67
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.48
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.1
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.37
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.15
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.98
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.74
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.46
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.83
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.06
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	83.1
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	83.04
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	81.73

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-42  Score=375.82  Aligned_cols=366  Identities=14%  Similarity=0.199  Sum_probs=247.2

Q ss_pred             cchhhhhhHhhhccchhhhhhhhhhccCccccc--ccccccccccccccccccccccccccccccccchhhcccccceee
Q 005342          195 KEELIYLIHQFLNEEEFKETLHKLEQETRVFFD--INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYL  272 (701)
Q Consensus       195 ~~~~~~l~~q~l~~~~~~~~~~~l~~es~~~~~--~~~~~~~i~~g~~~~~e~~l~~~~~~~~~~~s~~~~~~~~~q~~~  272 (701)
                      ++++.+++.|+|++.+|.+++..+++|.+...+  ...+...++.+.|....++-.....++....      ...+ .+ 
T Consensus         8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~------~~~~-~~-   79 (410)
T 1vyh_C            8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLN------EAKE-EF-   79 (410)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchhhhhhchhhhhhhheeeHHHHHHHHHHHHH------HHHH-HH-
Confidence            678999999999999999999999999876533  4445566777888766543221110000000      0000 00 


Q ss_pred             eeecccccccccccccccccccchhhhhhcccc-cCcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCC
Q 005342          273 EAVDRQQKLPSDFAERAHLFDDFKVLVERNPML-QDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNE  344 (701)
Q Consensus       273 ~~~~~~~~~~~~~~dr~~~~~~~~~l~~~~~~l-a~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~  344 (701)
                                                ....+.- ......|... ......+.+|.+.|.  +++|+|+       +.|+
T Consensus        80 --------------------------~~~~~~~~~~~~~~~~~~-~~~~~~l~gh~~~V~--~~~~~p~~~~l~s~s~Dg  130 (410)
T 1vyh_C           80 --------------------------TSGGPLGQKRDPKEWIPR-PPEKYALSGHRSPVT--RVIFHPVFSVMVSASEDA  130 (410)
T ss_dssp             --------------------------------------CCCCCC-SSCSCEEECCSSCEE--EEEECSSSSEEEEEESSS
T ss_pred             --------------------------hccCCccccCCccccccC-CCceEeecccCCcEE--EEEEcCCCCEEEEEeCCC
Confidence                                      0000000 0112233322 223456789999999  9999999       7899


Q ss_pred             eEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccc
Q 005342          345 TISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQL  423 (701)
Q Consensus       345 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~  423 (701)
                      +|++||+.++.....                             +.+|.. |.+++|+|+|++|++|+.|++|++||+. 
T Consensus       131 ~i~vwd~~~~~~~~~-----------------------------l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-  180 (410)
T 1vyh_C          131 TIKVWDYETGDFERT-----------------------------LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-  180 (410)
T ss_dssp             CEEEEETTTCCCCEE-----------------------------ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-
T ss_pred             eEEEEECCCCcEEEE-----------------------------EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-
Confidence            999999998877665                             246777 9999999999999999999999999997 


Q ss_pred             cCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccC
Q 005342          424 INEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA  503 (701)
Q Consensus       424 ~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~  503 (701)
                         .+++..   ...+|...|.+++|+|+|+++++|+.|+.|++||+                     .++.++.. + .
T Consensus       181 ---~~~~~~---~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~---------------------~~~~~~~~-~-~  231 (410)
T 1vyh_C          181 ---GFECIR---TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV---------------------QTGYCVKT-F-T  231 (410)
T ss_dssp             ---SSCEEE---CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET---------------------TTCCEEEE-E-E
T ss_pred             ---CCceeE---EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC---------------------CCCcEEEE-E-e
Confidence               555555   45678999999999999999999999999999965                     45554432 3 4


Q ss_pred             CCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCC--------------------C-eE
Q 005342          504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ--------------------D-LF  559 (701)
Q Consensus       504 ~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spd--------------------g-~l  559 (701)
                      +|...|.+++++  |.++++|+ |+.|++||+.+++....+.+|...|.+++|+|+                    | ++
T Consensus       232 ~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  311 (410)
T 1vyh_C          232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL  311 (410)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred             CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEE
Confidence            788999999999  88999999 999999999999999999999999999999996                    6 89


Q ss_pred             EEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCC
Q 005342          560 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI  639 (701)
Q Consensus       560 ~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~  639 (701)
                      ++|+.|+.|++||++++..+..+.+|...|++++|+|+|++|++|+.|++|++||+.+++..  ..+.    +|.   ..
T Consensus       312 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~--~~~~----~h~---~~  382 (410)
T 1vyh_C          312 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM--KTLN----AHE---HF  382 (410)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC--EEEE----CCS---SC
T ss_pred             EEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE--EEEc----CCC---Cc
Confidence            99999999999999999999999999999999999999999999999999999999987532  2333    565   89


Q ss_pred             eEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          640 VNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       640 v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      |++++|+|++++|++| .|++|+||++
T Consensus       383 v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          383 VTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            9999999999999996 7999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-40  Score=359.30  Aligned_cols=249  Identities=17%  Similarity=0.241  Sum_probs=222.0

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      +.|++||+.++++...+.+|.+.|.  +++|+|+       +.|++|++||+.+++++..          +         
T Consensus       130 g~i~vwd~~~~~~~~~l~~h~~~V~--~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~----------~---------  188 (410)
T 1vyh_C          130 ATIKVWDYETGDFERTLKGHTDSVQ--DISFDHSGKLLASCSADMTIKLWDFQGFECIRT----------M---------  188 (410)
T ss_dssp             SCEEEEETTTCCCCEEECCCSSCEE--EEEECTTSSEEEEEETTSCCCEEETTSSCEEEC----------C---------
T ss_pred             CeEEEEECCCCcEEEEEeccCCcEE--EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE----------E---------
Confidence            8999999999999999999999999  9999998       8999999999998887766          2         


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s  458 (701)
                                .+|.. |.+++|+|++++|++|+.|++|++||+.    ++.+..   .+.+|...|.++.|+|+|.++++
T Consensus       189 ----------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~----~~~~~~---~~~~h~~~v~~~~~~~~g~~l~s  251 (410)
T 1vyh_C          189 ----------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ----TGYCVK---TFTGHREWVRMVRPNQDGTLIAS  251 (410)
T ss_dssp             ----------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT----TCCEEE---EEECCSSCEEEEEECTTSSEEEE
T ss_pred             ----------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----CCcEEE---EEeCCCccEEEEEECCCCCEEEE
Confidence                      46777 9999999999999999999999999998    565544   23468899999999999999999


Q ss_pred             EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----------------------C
Q 005342          459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----------------------G  516 (701)
Q Consensus       459 ~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----------------------~  516 (701)
                      |+.||.|++||+                     .++.+... + .+|...|.+++|+                      |
T Consensus       252 ~s~D~~v~vwd~---------------------~~~~~~~~-~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  308 (410)
T 1vyh_C          252 CSNDQTVRVWVV---------------------ATKECKAE-L-REHRHVVECISWAPESSYSSISEATGSETKKSGKPG  308 (410)
T ss_dssp             EETTSCEEEEET---------------------TTCCEEEE-E-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred             EcCCCeEEEEEC---------------------CCCceeeE-e-cCCCceEEEEEEcCcccccchhhhccccccccCCCC
Confidence            999999999966                     34443322 2 3677888888886                      2


Q ss_pred             CEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE
Q 005342          517 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY  594 (701)
Q Consensus       517 ~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~  594 (701)
                      .++++|+ |+.|++||++++.++..+.+|...|++++|+|+| +|++|+.||.|++||+.+++.+..+.+|...|++++|
T Consensus       309 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~  388 (410)
T 1vyh_C          309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF  388 (410)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE
Confidence            4799999 9999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEECC
Q 005342          595 SLSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       595 spdg~~l~s~s~D~~I~vwd~~  616 (701)
                      +|++++|++|+.|++|++|+++
T Consensus       389 ~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          389 HKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CSSSSCEEEEETTSEEEEEC--
T ss_pred             cCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.1e-39  Score=366.84  Aligned_cols=334  Identities=10%  Similarity=0.062  Sum_probs=262.7

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc----
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL----  375 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~----  375 (701)
                      +.|++||+.+++....+.+|.+.|.  +++|||+       +.|++|+|||+.++.....        ..+.+|..    
T Consensus        39 ~~v~l~~~~~~~~~~~~~~h~~~v~--~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~--------~~~~~~~~~v~~  108 (611)
T 1nr0_A           39 TSVYTVPVGSLTDTEIYTEHSHQTT--VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK--------TTIPVFSGPVKD  108 (611)
T ss_dssp             TEEEEEETTCSSCCEEECCCSSCEE--EEEECTTSSEEEEEETTSEEEEEESSSTTCCEE--------EEEECSSSCEEE
T ss_pred             CEEEEecCCCcccCeEecCCCCceE--EEEECCCCcEEEEEeCCCCEEEeECCCCcceee--------EeecccCCceEE
Confidence            7899999999999999999999999  9999999       7899999999976554321        11333322    


Q ss_pred             ---------ccccC-CC----C----CCCc---cccCCCc-eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeE
Q 005342          376 ---------DASSG-DD----S----NDSS---CFNDNNQ-SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRT  432 (701)
Q Consensus       376 ---------~~s~~-D~----~----~~~~---~l~~h~~-V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~  432 (701)
                               +++++ |.    .    +.+.   .+.+|.. |++++|+|++. .|++|+.|++|++||..    ++++..
T Consensus       109 v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~----~~~~~~  184 (611)
T 1nr0_A          109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP----PFKFKS  184 (611)
T ss_dssp             EEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT----TBEEEE
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC----CCeEee
Confidence                     33322 11    1    2222   2789999 99999999987 59999999999999986    555444


Q ss_pred             eecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc------CCCC
Q 005342          433 LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA------ADPK  506 (701)
Q Consensus       433 l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~------~~~~  506 (701)
                         .+.+|...|.+++|+|||++|++|+.|++|++||..                     +++.... +.      .+|.
T Consensus       185 ---~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~---------------------~g~~~~~-~~~~~~~~~~h~  239 (611)
T 1nr0_A          185 ---TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV---------------------DGTKTGV-FEDDSLKNVAHS  239 (611)
T ss_dssp             ---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---------------------TCCEEEE-CBCTTSSSCSSS
T ss_pred             ---eeccccCceEEEEECCCCCEEEEEECCCcEEEEECC---------------------CCcEeee-eccccccccccC
Confidence               345799999999999999999999999999999763                     3332221 11      1689


Q ss_pred             CCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE-------------------------------------------E
Q 005342          507 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA-------------------------------------------T  540 (701)
Q Consensus       507 ~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~-------------------------------------------~  540 (701)
                      ..|.+++|+  |++|++++ |++|++||+.+++.+.                                           .
T Consensus       240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~  319 (611)
T 1nr0_A          240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV  319 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE
Confidence            999999999  88999999 9999999998876543                                           3


Q ss_pred             ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee-cC----------------------------------
Q 005342          541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KG----------------------------------  584 (701)
Q Consensus       541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l-~~----------------------------------  584 (701)
                      +.+|...|++++|+|+| ++++++.|++|++||+.+++....+ .+                                  
T Consensus       320 ~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~  399 (611)
T 1nr0_A          320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG  399 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence            34788899999999999 9999999999999999876543322 11                                  


Q ss_pred             -----------------------------------------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          585 -----------------------------------------------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       585 -----------------------------------------------h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                                                                     |...+.+++|+|||++||+|+.|++|++||+.+
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~  479 (611)
T 1nr0_A          400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG  479 (611)
T ss_dssp             SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred             ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC
Confidence                                                           223467899999999999999999999999988


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC-Cceeee--ee---e-eeEEEEEeeEE
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQ--VL---L-ISHIMFVQIVV  687 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~-g~~~~~--l~---~-i~~~~fs~~~~  687 (701)
                      +....   +. . .+|.   ..|++++|+|||++|+++ .|++|++||+.+ ++++..  +.   . |++++|||+..
T Consensus       480 ~~~~~---~~-~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~  549 (611)
T 1nr0_A          480 ASVSE---VK-T-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV  549 (611)
T ss_dssp             TEEEE---EE-E-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred             Cceee---ee-c-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC
Confidence            64322   22 1 2454   899999999999999996 799999999987 666554  22   2 99999999753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.7e-39  Score=366.39  Aligned_cols=331  Identities=15%  Similarity=0.171  Sum_probs=263.9

Q ss_pred             cccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          308 KLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       308 ~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      .|++||  +++....+.+|.+.|.  +++|+|+        +.|++|++||..++++...                    
T Consensus       130 ~v~~wd--~~~~~~~l~gh~~~v~--~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~--------------------  185 (611)
T 1nr0_A          130 HVFLFD--TGTSNGNLTGQARAMN--SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST--------------------  185 (611)
T ss_dssp             EEEETT--TCCBCBCCCCCSSCEE--EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE--------------------
T ss_pred             EEEEee--CCCCcceecCCCCCce--EEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee--------------------
Confidence            577777  5777788999999999  9999998        7899999999887766555                    


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee----cCCCCCCCCEEEEEEecCCC
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL----LPDNSFGGRVVRLIYSHSGD  454 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~----~~~~~~~~~v~~l~~spdg~  454 (701)
                               +.+|.. |++++|+|||++|++|+.|++|++||+.    .+++....    ....+|.+.|.+++|+|||+
T Consensus       186 ---------l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~----~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~  252 (611)
T 1nr0_A          186 ---------FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT  252 (611)
T ss_dssp             ---------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred             ---------eccccCceEEEEECCCCCEEEEEECCCcEEEEECC----CCcEeeeeccccccccccCCCEEEEEECCCCC
Confidence                     346777 9999999999999999999999999987    45443311    01126899999999999999


Q ss_pred             EEEEEECCCcEEEEecCCCCcc----c--------------ccccc----ceeeEEeeCCCCeEEeecccCCCCCCeEEE
Q 005342          455 FLVALTQTATHKLWKWQSNKQS----L--------------EEENV----NMESQLYQPSSKLVMTNDIAADPKDSISCF  512 (701)
Q Consensus       455 ~l~s~s~dg~i~vwd~~~~~~~----~--------------g~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l  512 (701)
                      +|++++.|++|++||+.++...    .              +....    ...+++|++.++..... + .+|...|.++
T Consensus       253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~-~-~gh~~~v~~l  330 (611)
T 1nr0_A          253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV-R-YGHNKAITAL  330 (611)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE-E-CCCSSCEEEE
T ss_pred             EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE-E-cCCCCCEEEE
Confidence            9999999999999999776531    0              11111    12378999888875542 2 5899999999


Q ss_pred             Eec--CCEEEEEe-CCeEEEEeCCCCcEEEEe-cC---------------------------------------------
Q 005342          513 ALR--GSHLFSAS-GGKISIFSLETFQTLATF-AN---------------------------------------------  543 (701)
Q Consensus       513 ~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~-~~---------------------------------------------  543 (701)
                      +|+  |++|++++ |+.|++||+.+++....+ .+                                             
T Consensus       331 ~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~  410 (611)
T 1nr0_A          331 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKL  410 (611)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEEC
T ss_pred             EEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeec
Confidence            999  89999999 999999999876543321 00                                             


Q ss_pred             ------------------------------------CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce--EEeecC
Q 005342          544 ------------------------------------PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKG  584 (701)
Q Consensus       544 ------------------------------------~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~--~~~l~~  584 (701)
                                                          +...+.+++|+||| ++++|+.|++|++||+.++..  +.. .+
T Consensus       411 ~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~  489 (611)
T 1nr0_A          411 SSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IV  489 (611)
T ss_dssp             SSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EE
T ss_pred             CCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cC
Confidence                                                12346789999999 999999999999999987653  344 67


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-Ceeeeeeeeee-ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEE
Q 005342          585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID  661 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~-g~~~~~~~l~~-~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~  661 (701)
                      |...|++++|+|||++|++++.|++|++||+.+ ++.     +.. ...+|.   ..|++++|+|||++|++| .|++|+
T Consensus       490 h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~-----~~~~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~  561 (611)
T 1nr0_A          490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL-----AHTNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVI  561 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE-----SCCCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCce-----eeeeeeeecc---cceeEEEECCCCCEEEEEECCCcEE
Confidence            999999999999999999999999999999987 432     111 223465   899999999999999996 799999


Q ss_pred             EEECCCCc-ee-eeee----e-eeEEEEEeeE
Q 005342          662 VYEAPTLN-HT-SQVL----L-ISHIMFVQIV  686 (701)
Q Consensus       662 iwd~~~g~-~~-~~l~----~-i~~~~fs~~~  686 (701)
                      +||+.+++ .+ ..+.    . |++++|+|+.
T Consensus       562 lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~  593 (611)
T 1nr0_A          562 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET  593 (611)
T ss_dssp             EEETTCTTSCCEEETTSSTTSCEEEEEEEETT
T ss_pred             EEECCCcccccchhhccCcccCeeEEEEcCCC
Confidence            99998875 33 3432    2 9999999875

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.4e-39  Score=335.53  Aligned_cols=282  Identities=16%  Similarity=0.135  Sum_probs=240.2

Q ss_pred             cceeEEEeecCcceeeeEEEEccC-----------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCC
Q 005342          317 SRLLSLIKQIMDWWVPYCINVMPN-----------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSND  385 (701)
Q Consensus       317 ~~~~~~l~~h~~~v~~~~l~fspd-----------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~  385 (701)
                      +.+...+++|.+.|+  +++|+|+           +.|++|+|||+.++.....                          
T Consensus        22 g~~~~~~~~H~~~V~--~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~--------------------------   73 (321)
T 3ow8_A           22 GILFKQEQAHDDAIW--SVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ--------------------------   73 (321)
T ss_dssp             EEEEEETTSSSSCEE--EEEEC-------CEEEEEETTSCEEEEEEETTEEEEE--------------------------
T ss_pred             hheeeecccCCCcEE--EEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee--------------------------
Confidence            455666789999999  9999874           8899999999987654222                          


Q ss_pred             CccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342          386 SSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT  464 (701)
Q Consensus       386 ~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  464 (701)
                       ..+.+|.. |.+++|+|++.++++|+.|++|++||+.    .+++..   ....+...+.+++|+|+|+++++|+.||.
T Consensus        74 -~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~----~~~~~~---~~~~~~~~~~~~~~spdg~~l~~g~~dg~  145 (321)
T 3ow8_A           74 -WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE----NGKQIK---SIDAGPVDAWTLAFSPDSQYLATGTHVGK  145 (321)
T ss_dssp             -EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT----TTEEEE---EEECCTTCCCCEEECTTSSEEEEECTTSE
T ss_pred             -eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC----CCCEEE---EEeCCCccEEEEEECCCCCEEEEEcCCCc
Confidence             12457888 9999999999999999999999999997    554433   12246778999999999999999999999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~  541 (701)
                      +++|++                     .++..... + ..|...|.+++|+  |++|++++ ||.|++||+++++.+..+
T Consensus       146 v~i~~~---------------------~~~~~~~~-~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~  202 (321)
T 3ow8_A          146 VNIFGV---------------------ESGKKEYS-L-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL  202 (321)
T ss_dssp             EEEEET---------------------TTCSEEEE-E-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEc---------------------CCCceeEE-e-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            999976                     33332221 2 3567789999999  89999999 999999999999999999


Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      .+|..+|.+++|+|++ +|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++.
T Consensus       203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~  282 (321)
T 3ow8_A          203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC  282 (321)
T ss_dssp             CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE
Confidence            9999999999999999 999999999999999999999999999999999999999999999999999999999999753


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                      .  ..   +. +|.   ..|++++|+|+|++|+++ .|++|+|||..
T Consensus       283 ~--~~---~~-~h~---~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          283 V--HT---FF-DHQ---DQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             E--EE---EC-CCS---SCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             E--EE---Ec-CCC---CcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            2  22   22 555   899999999999999985 89999999973

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.4e-39  Score=342.83  Aligned_cols=307  Identities=12%  Similarity=0.118  Sum_probs=251.8

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      ..+..|+..+..+.+++.+|.+.|.  +++|+|+       +.|++|+|||+.++.....                    
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V~--~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~--------------------  103 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKVY--SLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA--------------------  103 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCEE--EEEECTTSSCEEEEETTSEEEEEETTTTEEEEE--------------------
T ss_pred             ccccccccceeEEeecccccccEEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCccceE--------------------
Confidence            3456788888899999999999999  9999999       8999999999998877665                    


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEE
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLV  457 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~  457 (701)
                               +.+|.. |.+++|+|+|++|++|+.|+.+++|++...........+.....+|.+.|.++.|+|++ ..|+
T Consensus       104 ---------~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~  174 (380)
T 3iz6_a          104 ---------IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI  174 (380)
T ss_dssp             ---------EECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred             ---------EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEE
Confidence                     235666 88999999999999999999999999863221111011111345789999999999974 5799


Q ss_pred             EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee---cccCCCCCCeEEEEec---CCEEEEEe-CCeEEEE
Q 005342          458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN---DIAADPKDSISCFALR---GSHLFSAS-GGKISIF  530 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~---~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iw  530 (701)
                      +|+.|++|++||+.+                     ++.+..   .+..+|...|.+++++   ++++++|+ |+.|++|
T Consensus       175 s~s~D~~i~~wd~~~---------------------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~w  233 (380)
T 3iz6_a          175 TGSGDQTCVLWDVTT---------------------GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW  233 (380)
T ss_dssp             EECTTSCEEEECTTT---------------------CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEE
T ss_pred             EECCCCcEEEEEcCC---------------------CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEE
Confidence            999999999997643                     332211   1224788999999996   78999999 9999999


Q ss_pred             eCC-CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-------CCeEEEEEecCCCEE
Q 005342          531 SLE-TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-------NRITCLAYSLSLNVL  601 (701)
Q Consensus       531 d~~-~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-------~~V~~v~~spdg~~l  601 (701)
                      |++ +++.+..+.+|...|.+++|+|++ ++++|+.||+|++||+++++.+..+..+.       ..|++++|+|+|++|
T Consensus       234 d~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  313 (380)
T 3iz6_a          234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL  313 (380)
T ss_dssp             ETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEE
T ss_pred             ECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEE
Confidence            997 457888999999999999999999 99999999999999999999888876543       248999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce
Q 005342          602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH  670 (701)
Q Consensus       602 ~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~  670 (701)
                      ++|+.||.|++||+..++..  ..+..+..+|.   +.|++++|+|||++|++| .|++|+||++..++.
T Consensus       314 ~~g~~dg~i~vwd~~~~~~~--~~~~~~~~~h~---~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          314 FAGYSNGDCYVWDTLLAEMV--LNLGTLQNSHE---GRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             EEECTTSCEEEEETTTCCEE--EEECCSCSSCC---CCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             EEEECCCCEEEEECCCCceE--EEEecccCCCC---CceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence            99999999999999987633  23332334665   899999999999999997 799999999976643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.7e-37  Score=326.91  Aligned_cols=282  Identities=13%  Similarity=0.145  Sum_probs=239.8

Q ss_pred             ccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc
Q 005342          316 KSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC  388 (701)
Q Consensus       316 ~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~  388 (701)
                      ..+....+.+|.+.|.  +++|+|+       +.|++|++||+.++..+..+                            
T Consensus        44 ~~~~~~~l~gH~~~v~--~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~----------------------------   93 (340)
T 1got_B           44 QMRTRRTLRGHLAKIY--AMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI----------------------------   93 (340)
T ss_dssp             CCCEEEEECCCSSCEE--EEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE----------------------------
T ss_pred             cchhheeecCCCCceE--EEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe----------------------------
Confidence            3466788999999999  9999999       89999999999988776652                            


Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                       ..|.. |.+++|+|+|+++++|+.|+.+++|++...........   ...+|.+.|.++.|++++. +++++.|+.|++
T Consensus        94 -~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~  168 (340)
T 1got_B           94 -PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR---ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCAL  168 (340)
T ss_dssp             -ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEE---EEECCSSCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred             -ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEE---EecCCCccEEEEEECCCCc-EEEEECCCcEEE
Confidence             35666 99999999999999999999999999973221111111   2346889999999999886 899999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      ||+                     .++..+.. + .+|...|.+++|+  +.++++|+ |+.|++||++++..+..+.+|
T Consensus       169 wd~---------------------~~~~~~~~-~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h  225 (340)
T 1got_B          169 WDI---------------------ETGQQTTT-F-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH  225 (340)
T ss_dssp             EET---------------------TTTEEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             EEC---------------------CCCcEEEE-E-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence            965                     55554432 3 4789999999999  88999999 999999999999999999999


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      ...|++++|+|++ ++++|+.||+|++||+++++.+..+..  +...|++++|+|+|++|++|+.|+.|++||+.+++..
T Consensus       226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~  305 (340)
T 1got_B          226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence            9999999999999 999999999999999999888777653  3357999999999999999999999999999987532


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                        ..+.    +|.   ..|++++|+|+|++|++| .|++|+|||
T Consensus       306 --~~~~----~h~---~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          306 --GVLA----GHD---NRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --EEEE----CCS---SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --eEee----cCC---CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence              2233    665   899999999999999996 799999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.3e-37  Score=320.60  Aligned_cols=282  Identities=15%  Similarity=0.205  Sum_probs=236.9

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      +...++.+|.+.|.  +++|+|+       +.|++|++||+.++..+..+                             .
T Consensus         4 ~~~~~~~~h~~~V~--~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-----------------------------~   52 (304)
T 2ynn_A            4 DIKKTFSNRSDRVK--GIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-----------------------------Q   52 (304)
T ss_dssp             CCEEEEEEECSCEE--EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-----------------------------E
T ss_pred             eeEEeecCCCCceE--EEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-----------------------------e
Confidence            45678899999999  9999999       78999999999998876662                             3


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      +|.. |.+++|+|++++|++|+.|+.|++||+.    ++++..   ...+|...|.+++|+|+++++++|+.||+|++||
T Consensus        53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~----~~~~~~---~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd  125 (304)
T 2ynn_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN----TGEKVV---DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN  125 (304)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT----TCCEEE---EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC----CCcEEE---EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEE
Confidence            5666 9999999999999999999999999998    555443   2346899999999999999999999999999997


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEec-CC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA-NP  544 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~-~~  544 (701)
                      +.                     ++......+ .+|...|.+++|+   +..+++|+ |+.|++||+.++.....+. ++
T Consensus       126 ~~---------------------~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~  183 (304)
T 2ynn_A          126 WE---------------------NNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ  183 (304)
T ss_dssp             GG---------------------GTTEEEEEE-CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC
T ss_pred             CC---------------------CCcchhhhh-cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC
Confidence            63                     232111112 4789999999998   57899999 9999999998877655554 45


Q ss_pred             CCCeEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          545 PPIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       545 ~~~i~~l~~sp--dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      ...+..+.++|  ++ ++++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++|+.||+|++||+.+++..
T Consensus       184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE  263 (304)
T ss_dssp             TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            67899999987  66 9999999999999999999999999999999999999999999999999999999999997533


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCC--EEEEEecCeEEEEECCCC
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQI--HLLSIHEGQIDVYEAPTL  668 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~--~l~sg~Dg~I~iwd~~~g  668 (701)
                        ..   +. .|.   ..+.+++|+|++.  ++++|.|+.+.+|++.+.
T Consensus       264 --~~---~~-~~~---~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~  303 (304)
T 2ynn_A          264 --KT---LN-VGL---ERSWCIATHPTGRKNYIASGFDNGFTVLSLGND  303 (304)
T ss_dssp             --EE---EC-CSS---SSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred             --ee---cc-CCC---ccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence              22   32 343   7899999999875  578888888999998653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=326.93  Aligned_cols=302  Identities=15%  Similarity=0.141  Sum_probs=236.8

Q ss_pred             ccceeEEEeecCc-ceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCc
Q 005342          316 KSRLLSLIKQIMD-WWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSS  387 (701)
Q Consensus       316 ~~~~~~~l~~h~~-~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~  387 (701)
                      +.+++..+.+|.+ .|+  +++|+|+       +.|++|+|||+.++.....                          ..
T Consensus         4 ~~~~~~~~~~h~~~~v~--~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~--------------------------~~   55 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCW--FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK--------------------------SV   55 (345)
T ss_dssp             CEEEEEEECCSTTSCEE--EEEECTTSSCEEEEETTSCEEEEEEETTEEEEE--------------------------EE
T ss_pred             cEEEeeeecCCCCCcEE--EEEECCCCCEEEEEcCCCeEEEEEcCCCcceee--------------------------ee
Confidence            3467888999988 899  9999999       8899999999988754322                          00


Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      ...+|.. |.+++|+|+|++|++|+.|+++++|++.    .+....+. ...+|...|.+++|+|+|++|++|+.|+.|+
T Consensus        56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~----~~~~~~~~-~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~  130 (345)
T 3fm0_A           56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN----QDDFECVT-TLEGHENEVKSVAWAPSGNLLATCSRDKSVW  130 (345)
T ss_dssp             ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC----CC-EEEEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc----CCCeEEEE-EccCCCCCceEEEEeCCCCEEEEEECCCeEE
Confidence            1247888 9999999999999999999999999987    33322111 3356899999999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc--EEEEe
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATF  541 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~--~~~~~  541 (701)
                      +||+....                  ...++.. + .+|...|.+++|+  +.+|++++ |+.|++||.+++.  ....+
T Consensus       131 iwd~~~~~------------------~~~~~~~-~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~  190 (345)
T 3fm0_A          131 VWEVDEED------------------EYECVSV-L-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL  190 (345)
T ss_dssp             EEEECTTS------------------CEEEEEE-E-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCC------------------CeEEEEE-e-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe
Confidence            99874321                  1112221 2 4788999999999  88999999 9999999998775  45788


Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---------------ceEEeecC-CCCCeEEEEEecCCCEEEEE
Q 005342          542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---------------KTKAKLKG-HQNRITCLAYSLSLNVLVSS  604 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~---------------~~~~~l~~-h~~~V~~v~~spdg~~l~s~  604 (701)
                      .+|...|++++|+|+| +|++|+.|++|++||....               +.+..+.+ |...|.+++|+|++..|+++
T Consensus       191 ~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~  270 (345)
T 3fm0_A          191 EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATA  270 (345)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEE
Confidence            8999999999999999 9999999999999996321               33455665 88899999999999999999


Q ss_pred             eCCCeEEEEECCCCeee----eeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEEE-ecCeEEEEECCCCceeeee
Q 005342          605 GADAQLCVWDAVGWKKL----CSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       605 s~D~~I~vwd~~~g~~~----~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~sg-~Dg~I~iwd~~~g~~~~~l  674 (701)
                      +.|+.|++|+...+...    ...... ...+|.   ..|++++|+|++ .+|+++ .||+|++|++.+++.....
T Consensus       271 ~~d~~i~vw~~~~~~~~~~~~~~~~~~-~~~~h~---~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          271 CGDDAIRVFQEDPNSDPQQPTFSLTAH-LHQAHS---QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             ETTSCEEEEEECTTSCTTSCCEEEEEE-ETTSSS---SCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             eCCCeEEEEEeCCCCCcceeeEEEEee-eccccc---CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            99999999998765311    111112 234565   899999999998 488885 8999999999988876544

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.2e-37  Score=321.86  Aligned_cols=290  Identities=15%  Similarity=0.146  Sum_probs=236.4

Q ss_pred             ceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF  389 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l  389 (701)
                      .+..++.+|.+.|.  +++|+|+        +.|++|++|++.+.......                        ....+
T Consensus         8 ~l~~~l~gH~~~V~--~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~------------------------~~~~~   61 (319)
T 3frx_A            8 VLRGTLEGHNGWVT--SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV------------------------PVRSF   61 (319)
T ss_dssp             EEEEEECCCSSCEE--EEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE------------------------EEEEE
T ss_pred             EEEEEEccccceEE--EEEccCCCccEEEEecCCccEEEecCCCCCccccc------------------------cceEE
Confidence            56678999999999  9999985        89999999999754322110                        12235


Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      .+|.. |.+++|+|+|++|++|+.|++|++||+.    ++++..   .+.+|...|.+++|+|++.++++|+.|+.|++|
T Consensus        62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~----~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw  134 (319)
T 3frx_A           62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA----TGETYQ---RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW  134 (319)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TTEEEE---EEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC----CCCeeE---EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            68888 9999999999999999999999999998    565544   234689999999999999999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C------CEEEEEe-CCeEEEEeCCCCcEEE
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G------SHLFSAS-GGKISIFSLETFQTLA  539 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~------~~l~s~s-dg~I~iwd~~~~~~~~  539 (701)
                      |+                     ....+..  + .+|...|.+++++  +      ..+++++ |+.|++||+++++...
T Consensus       135 d~---------------------~~~~~~~--~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  190 (319)
T 3frx_A          135 TI---------------------KGQCLAT--L-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA  190 (319)
T ss_dssp             ET---------------------TSCEEEE--E-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EC---------------------CCCeEEE--E-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe
Confidence            76                     2222221  2 3788899999997  2      2788888 9999999999999999


Q ss_pred             EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      .+.+|...|.+++|+|+| +|++|+.||.|++||+.+++.+..+..+ ..|.+++|+|++.++++++.+ .+++|++..+
T Consensus       191 ~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~  268 (319)
T 3frx_A          191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ  268 (319)
T ss_dssp             EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence            999999999999999999 9999999999999999999999988854 679999999999999988765 5999999885


Q ss_pred             eeeeeeeeee-ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342          619 KKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL  668 (701)
Q Consensus       619 ~~~~~~~l~~-~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g  668 (701)
                      ....  .+.. .......+...+.+++|+|||++|++| .|+.|+|||+.++
T Consensus       269 ~~~~--~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          269 YLVD--DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEE--EECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             eeee--ccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            4322  1210 111111122678999999999999996 7999999999765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=328.05  Aligned_cols=301  Identities=14%  Similarity=0.099  Sum_probs=224.4

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG  380 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  380 (701)
                      ...+.|++.+...    ..|...|.  +++|+||      +.|+++++||.........          ...+.      
T Consensus        14 ~~~r~w~~~~~~~----~~~~~~v~--~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~----------~~~~~------   71 (344)
T 4gqb_B           14 PAAREWNLPPNAP----ACMERQLE--AARYRSDGALLLGASSLSGRCWAGSLWLFKDP----------CAAPN------   71 (344)
T ss_dssp             ---------CCSC----SSCCSEEE--EEEECTTSCEEEEEECCSSSCCCEEEEEESSG----------GGTTC------
T ss_pred             ccccccCCCCCCc----ccccCCEE--EEEECCCCCEEEEEeCCceEEeeceeeeeccc----------cccCC------
Confidence            3456777765543    34666788  9999999      5588889997542211110          00110      


Q ss_pred             CCCCCCcc--ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCcee-EeecCCCCCCCCEEEEEEecCCCEE
Q 005342          381 DDSNDSSC--FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFL  456 (701)
Q Consensus       381 D~~~~~~~--l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~-~l~~~~~~~~~~v~~l~~spdg~~l  456 (701)
                          ...+  ...|.. |.+++|+|++ .|++|+.||+|++||+.    ++++. .......+|.+.|.+++|+|+|++|
T Consensus        72 ----~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~----~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l  142 (344)
T 4gqb_B           72 ----EGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELD----ENETLIVSKFCKYEHDDIVSTVSVLSSGTQA  142 (344)
T ss_dssp             ----GGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEEC----TTSSCEEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ----cceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEecc----CCCceeEeeccccCCCCCEEEEEECCCCCEE
Confidence                0111  224455 9999999995 68899999999999998    44332 2222334689999999999999999


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C-CEEEEEe-CCeEEEEeC
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSL  532 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~-~~l~s~s-dg~I~iwd~  532 (701)
                      ++|+.||+|++||+                     .+++++.. + .+|...|.+++|+  + .++++++ |+.|++||+
T Consensus       143 ~sgs~d~~i~iwd~---------------------~~~~~~~~-~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~  199 (344)
T 4gqb_B          143 VSGSKDICIKVWDL---------------------AQQVVLSS-Y-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT  199 (344)
T ss_dssp             EEEETTSCEEEEET---------------------TTTEEEEE-E-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             EEEeCCCeEEEEEC---------------------CCCcEEEE-E-cCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence            99999999999955                     56665543 3 5799999999998  4 5788998 999999999


Q ss_pred             CCCcEEEEec--CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC-CEEEEEeCC
Q 005342          533 ETFQTLATFA--NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGAD  607 (701)
Q Consensus       533 ~~~~~~~~~~--~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg-~~l~s~s~D  607 (701)
                      ++++....+.  .+...+.+++|+|++  ++++|+.||.|++||+++++.+..+.+|...|++++|+|++ ++||+|+.|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D  279 (344)
T 4gqb_B          200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED  279 (344)
T ss_dssp             TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             cccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC
Confidence            9999888774  345678999999976  88999999999999999999999999999999999999997 589999999


Q ss_pred             CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE-ecCeEEEEECCCCcee
Q 005342          608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI-HEGQIDVYEAPTLNHT  671 (701)
Q Consensus       608 ~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg-~Dg~I~iwd~~~g~~~  671 (701)
                      ++|+|||+.+++..   .   + .+|.   ..|++++|+|+++ +|+++ .|++|++|++.+....
T Consensus       280 ~~i~vwd~~~~~~~---~---~-~~H~---~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          280 CSLAVLDSSLSELF---R---S-QAHR---DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP  335 (344)
T ss_dssp             SCEEEECTTCCEEE---E---E-CCCS---SCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred             CeEEEEECCCCcEE---E---E-cCCC---CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence            99999999997532   1   2 2666   8999999999986 45564 7999999999876543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.2e-36  Score=341.72  Aligned_cols=274  Identities=15%  Similarity=0.208  Sum_probs=228.4

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +.+|.. |.+++|+|+|++|++++.|+.|++|+..     ++...   ...+|...|.+++|+|+++.+++++.|+.+++
T Consensus       217 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-----~~~~~---~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~  288 (577)
T 2ymu_A          217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQ---TLTGHSSSVNGVAFRPDGQTIASASDDKTVKL  288 (577)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-----SCEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-----CCEEE---EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence            567777 8888888888888888888889998864     33333   23458899999999999999999999999999


Q ss_pred             EecCCCCc----------------cccccccc----eeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C
Q 005342          468 WKWQSNKQ----------------SLEEENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G  524 (701)
Q Consensus       468 wd~~~~~~----------------~~g~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d  524 (701)
                      ||......                +.+.....    -.+++|+.....+..  + .+|...|.+++++  |+++++++ |
T Consensus       289 w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~--~-~~~~~~v~~~~~s~~g~~l~~~~~d  365 (577)
T 2ymu_A          289 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT--L-TGHSSSVWGVAFSPDGQTIASASDD  365 (577)
T ss_dssp             EETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE--E-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEE--E-eCCCCCEEEEEECCCCCEEEEEeCC
Confidence            99754432                12222221    138899987766543  2 4788999999999  88999999 9


Q ss_pred             CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342          525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       525 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s  603 (701)
                      |.|++||. +++.+..+.+|...|++++|+|+| ++++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++
T Consensus       366 g~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~  443 (577)
T 2ymu_A          366 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIAS  443 (577)
T ss_dssp             SEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             CEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence            99999996 678888999999999999999999 9999999999999995 67888899999999999999999999999


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----ee
Q 005342          604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----IS  678 (701)
Q Consensus       604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~  678 (701)
                      ++.|++|++||.... .  ...+.    +|.   ..|++++|+||+++|+++ .|++|++||. ++++++++.+    |+
T Consensus       444 ~~~d~~v~~w~~~~~-~--~~~~~----~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~  512 (577)
T 2ymu_A          444 ASDDKTVKLWNRNGQ-L--LQTLT----GHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVR  512 (577)
T ss_dssp             EETTSEEEEEETTSC-E--EEEEE----CCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEE
T ss_pred             EcCCCEEEEEECCCC-E--EEEEc----CCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEE
Confidence            999999999997542 1  12222    555   899999999999999996 7999999995 7899999887    99


Q ss_pred             EEEEEeeE
Q 005342          679 HIMFVQIV  686 (701)
Q Consensus       679 ~~~fs~~~  686 (701)
                      +++|+|+.
T Consensus       513 ~l~~s~dg  520 (577)
T 2ymu_A          513 GVAFSPDG  520 (577)
T ss_dssp             EEEECTTS
T ss_pred             EEEEcCCC
Confidence            99999874

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2e-36  Score=342.16  Aligned_cols=324  Identities=15%  Similarity=0.192  Sum_probs=271.5

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      +.|++||. +++.+..+.+|...|.  +++|+|+       +.|++|++||.. ++.+..                    
T Consensus       202 ~~v~~w~~-~~~~~~~~~~~~~~v~--~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~--------------------  257 (577)
T 2ymu_A          202 KTVKLWNR-NGQLLQTLTGHSSSVR--GVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT--------------------  257 (577)
T ss_dssp             SEEEEECT-TSCEEEEEECCSSCEE--EEEECTTSSCEEEEETTSCEEEECTT-SCEEEE--------------------
T ss_pred             CEEEEEeC-CCcEEEEEecCCCCEE--EEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEE--------------------
Confidence            88999995 6788999999999999  9999998       789999999953 343333                    


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s  458 (701)
                               +.+|.. |.+++|+|+++.+++++.|+.+++|+..     ++...   ...+|...|.+++|+|+++.+++
T Consensus       258 ---------~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-----~~~~~---~~~~h~~~v~~~~~~~~~~~l~t  320 (577)
T 2ymu_A          258 ---------LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-----GQLLQ---TLTGHSSSVWGVAFSPDGQTIAS  320 (577)
T ss_dssp             ---------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----SCEEE---EECCCSSCEEEEEECTTSSEEEE
T ss_pred             ---------EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-----CcEEE---EEecCCCCeEEEEECCCCCEEEE
Confidence                     246777 9999999999999999999999999974     33333   23468899999999999999999


Q ss_pred             EECCCcEEEEecCCCCc----------------cccccccc----eeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C
Q 005342          459 LTQTATHKLWKWQSNKQ----------------SLEEENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  516 (701)
Q Consensus       459 ~s~dg~i~vwd~~~~~~----------------~~g~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~  516 (701)
                      ++.||.+++||......                +.|..++.    ..+++|+.. ++++.. + .+|...|.+++|+  |
T Consensus       321 ~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~-~-~~~~~~v~~~~~s~dg  397 (577)
T 2ymu_A          321 ASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT-L-TGHSSSVRGVAFSPDG  397 (577)
T ss_dssp             EETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEE-E-ECCSSCEEEEEECTTS
T ss_pred             EeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEE-e-cCCCCCeEEEEECCCC
Confidence            99999999999865543                22332221    137899954 444432 2 4788999999999  8


Q ss_pred             CEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE
Q 005342          517 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY  594 (701)
Q Consensus       517 ~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~  594 (701)
                      ++|++++ |+.|++||. +++.+..+.+|...|++++|+|++ ++++++.|+.|++||. +++.+..+.+|...|++++|
T Consensus       398 ~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~  475 (577)
T 2ymu_A          398 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF  475 (577)
T ss_dssp             SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEE
Confidence            8999999 999999996 678888999999999999999999 9999999999999995 67788899999999999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeee
Q 005342          595 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ  673 (701)
Q Consensus       595 spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~  673 (701)
                      +|++++|++++.|++|++||.. ++.  ...+.    +|.   ..|++++|+|||++|+++ .|+.|++||. +++++++
T Consensus       476 spd~~~las~~~d~~i~iw~~~-~~~--~~~~~----~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~  544 (577)
T 2ymu_A          476 SPDGQTIASASDDKTVKLWNRN-GQL--LQTLT----GHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT  544 (577)
T ss_dssp             CTTSCEEEEEETTSEEEEEETT-SCE--EEEEE----CCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred             cCCCCEEEEEeCCCEEEEEcCC-CCE--EEEEe----CCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence            9999999999999999999964 432  22333    665   899999999999999996 7999999996 7899999


Q ss_pred             eee----eeEEEEEeeEE
Q 005342          674 VLL----ISHIMFVQIVV  687 (701)
Q Consensus       674 l~~----i~~~~fs~~~~  687 (701)
                      +.+    |++++|+|+..
T Consensus       545 ~~~h~~~v~~~~fs~dg~  562 (577)
T 2ymu_A          545 LTGHSSSVWGVAFSPDGQ  562 (577)
T ss_dssp             EECCSSCEEEEEECTTSS
T ss_pred             EcCCCCCEEEEEEcCCCC
Confidence            887    99999998753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=8.9e-37  Score=323.36  Aligned_cols=280  Identities=15%  Similarity=0.202  Sum_probs=237.7

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      +....+.+|.+.|.  +++|+|+       +.|++|++||..++.....+                             .
T Consensus        55 ~~~~~l~gH~~~V~--~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-----------------------------~  103 (354)
T 2pbi_B           55 KTRRTLKGHGNKVL--CMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-----------------------------T  103 (354)
T ss_dssp             CEEEEEECCSSCEE--EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----------------------------E
T ss_pred             EEEEEecCCCCeEE--EEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-----------------------------e
Confidence            56788999999999  9999999       89999999999888766552                             2


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC---ceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~---~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .|.. |.+++|+|+|.++++|+.|+.+++|++.......   ....+    ..|...|.+++|+|++..|++++.||+|+
T Consensus       104 ~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~l~t~s~D~~v~  179 (354)
T 2pbi_B          104 MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV----AMHTNYLSACSFTNSDMQILTASGDGTCA  179 (354)
T ss_dssp             CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE----EECSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceee----eccCCcEEEEEEeCCCCEEEEEeCCCcEE
Confidence            4555 8899999999999999999999999986321111   11121    24889999999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~~~~~  541 (701)
                      +||+                     .+++++.. + .+|...|.+++++    |+++++|+ ||.|++||+++++.+..+
T Consensus       180 lwd~---------------------~~~~~~~~-~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~  236 (354)
T 2pbi_B          180 LWDV---------------------ESGQLLQS-F-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF  236 (354)
T ss_dssp             EEET---------------------TTCCEEEE-E-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEeC---------------------CCCeEEEE-E-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            9965                     55554432 2 4788999999986    57999999 999999999999999999


Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC--CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h--~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      .+|...|++++|+|++ .+++|+.|++|++||+++++.+..+..+  ...+.+++|+|+|++|++|+.|++|++||+.++
T Consensus       237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  316 (354)
T 2pbi_B          237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG  316 (354)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence            9999999999999999 9999999999999999998877776643  347899999999999999999999999999987


Q ss_pred             eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       619 ~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                      +..  ..+    .+|.   ..|++++|+|||++|++| .|++|+||+
T Consensus       317 ~~~--~~l----~~h~---~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          317 SRV--SIL----FGHE---NRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SEE--EEE----CCCS---SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ceE--EEE----ECCC---CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            533  222    2665   899999999999999996 799999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.8e-37  Score=321.93  Aligned_cols=266  Identities=14%  Similarity=0.160  Sum_probs=227.5

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +.+|.. |++++|+||+++|++|+.||+|++||+.    ++....   ....|...|.+++|+|+|+++++|+.|+.+++
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~----~~~~~~---~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY----TTNKVH---AIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT----TCCEEE---EEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC----CCCcce---EeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence            678888 9999999999999999999999999987    444333   12247889999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPP  545 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~  545 (701)
                      |++.+..                 ....... .+ .+|...|.++.|+ +..+++++ |+.|++||+++++.+..+.+|.
T Consensus       124 w~~~~~~-----------------~~~~~~~-~~-~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~  184 (340)
T 1got_B          124 YNLKTRE-----------------GNVRVSR-EL-AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT  184 (340)
T ss_dssp             EETTTCS-----------------BSCEEEE-EE-ECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EECccCC-----------------CcceeEE-Ee-cCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCC
Confidence            9874321                 0011111 12 4788999999999 77788888 9999999999999999999999


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      ..|.+++|+|++ ++++|+.|+.|++||++++..+..+.+|...|++++|+|++++|++|+.|++|++||+++++...  
T Consensus       185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~--  262 (340)
T 1got_B          185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM--  262 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE--
Confidence            999999999999 99999999999999999999999999999999999999999999999999999999999875332  


Q ss_pred             eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342          625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV  687 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~  687 (701)
                      .+. . ..+.   ..|++++|+|+|++|++| .|+.|++||+.+++.+..+.+    |++++|+|+..
T Consensus       263 ~~~-~-~~~~---~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~  325 (340)
T 1got_B          263 TYS-H-DNII---CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             EEC-C-TTCC---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred             EEc-c-CCcc---cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCC
Confidence            111 1 1222   579999999999999997 799999999999999999887    99999998743

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-37  Score=320.12  Aligned_cols=295  Identities=12%  Similarity=0.105  Sum_probs=226.4

Q ss_pred             CccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCcc--ccccccccCCCCCCCCCCcccccCCCCCCCc
Q 005342          315 DKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSN--LRYASSILTDKPNQEGRPLDASSGDDSNDSS  387 (701)
Q Consensus       315 ~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~  387 (701)
                      .+.+++..+.+|.+.|+  +++|+|+     +.|++|++||+.++..  ...          +.                
T Consensus         2 ~~~~~~~~~~~h~~~v~--~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~----------~~----------------   53 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIW--SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDV----------LD----------------   53 (330)
T ss_dssp             -CCEEEEEEECCSSCEE--EEEEETTEEEEEESSSCEEEEECSSSCCEEEEE----------EC----------------
T ss_pred             cccccceeeccCCCcee--eeccCCCEEEEEcCCCEEEEEEecCCCeEEEEE----------Ee----------------
Confidence            35577889999999999  9999999     8999999999987532  221          10                


Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCC---CCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINE---PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA  463 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~---~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg  463 (701)
                       ..+|.. |.+++|+|++++|++|+.|++|++|++.....   ...+..   ...+|...|.+++|+|+|++|++|+.|+
T Consensus        54 -~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~---~~~~h~~~V~~v~~sp~g~~las~s~D~  129 (330)
T 2hes_X           54 -ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA---IIEGHENEVKGVAWSNDGYYLATCSRDK  129 (330)
T ss_dssp             -TTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEE---EEC----CEEEEEECTTSCEEEEEETTS
T ss_pred             -cCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEE---EEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence             114777 99999999999999999999999999853211   111222   2346899999999999999999999999


Q ss_pred             cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC--cEE
Q 005342          464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF--QTL  538 (701)
Q Consensus       464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~--~~~  538 (701)
                      .|++||+....                 ...+++.. + .+|...|.+++|+  +.+|++++ |+.|++||..++  +++
T Consensus       130 ~v~iwd~~~~~-----------------~~~~~~~~-~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~  190 (330)
T 2hes_X          130 SVWIWETDESG-----------------EEYECISV-L-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV  190 (330)
T ss_dssp             CEEEEECCTTC-----------------CCCEEEEE-E-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             EEEEEeccCCC-----------------CCeEEEEE-e-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE
Confidence            99999873210                 11223221 2 4789999999999  88999999 999999998766  678


Q ss_pred             EEecCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCC--------ceEEeecC-CCCCeEEEEEecCCCEEEEEeC
Q 005342          539 ATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTK--------KTKAKLKG-HQNRITCLAYSLSLNVLVSSGA  606 (701)
Q Consensus       539 ~~~~~~~~~i~~l~~spd--g-~l~~gs~dg~I~iwd~~~~--------~~~~~l~~-h~~~V~~v~~spdg~~l~s~s~  606 (701)
                      ..+.+|...|.+++|+|+  + .+++|+.|++|++||+.++        .....+.+ |...|.+++|+|++ +|++++.
T Consensus       191 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~  269 (330)
T 2hes_X          191 AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA  269 (330)
T ss_dssp             EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET
T ss_pred             EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC
Confidence            889999999999999999  6 8999999999999998765        34555665 89999999999765 7999999


Q ss_pred             CCeEEEEECCCCeeeeeeeeeeccCCCCCCCC-CeEEEEEcC--CCCEEEEE-ecCeEEEEECCC
Q 005342          607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHP--DQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       607 D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~-~v~~v~~sp--dg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      ||+|++||..+++..   .+.....+|.   . .|++++|+|  ++++|++| .||+|+|||+++
T Consensus       270 dg~v~iw~~~~~~~~---~~~~~~~~h~---~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          270 DGVLAVYEEVDGEWK---VFAKRALCHG---VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TSCEEEEEEETTEEE---EEEEESCTTT---TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             CCEEEEEEcCCCceE---EEeccccccc---cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            999999999887421   1111223554   4 899999999  68899985 899999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.9e-37  Score=326.42  Aligned_cols=293  Identities=14%  Similarity=0.114  Sum_probs=221.2

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CC------CCeEEEEeccCCccccccccccCCCCCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------AN------NETISLKDFPTVSNLRYASSILTDKPNQEGR  373 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~------d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~  373 (701)
                      .+...|++++..    ..+|...|.  +++||||       +.      |+++++|+..++.....+             
T Consensus        26 ~~~~~w~~p~~~----p~~H~~~V~--~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-------------   86 (357)
T 4g56_B           26 SKGSAWGRPVTA----PACMEVQIG--AVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-------------   86 (357)
T ss_dssp             ------------------CCCSEEE--EEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG-------------
T ss_pred             ccccccCCCCCC----cccccCCEE--EEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE-------------
Confidence            456778776543    357999999  9999999       33      788999998877654441             


Q ss_pred             CcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEec
Q 005342          374 PLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSH  451 (701)
Q Consensus       374 ~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~sp  451 (701)
                                  .....+|.. |.+++|+|++.+ ++++.||+|++||+.    .++... ......+|...|.+++|+|
T Consensus        87 ------------~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~----~~~~~~~~~~~~~~h~~~V~~v~~sp  149 (357)
T 4g56_B           87 ------------CTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEIL----EKESLLVNKFAKYEHDDIVKTLSVFS  149 (357)
T ss_dssp             ------------CSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC------------CCCCEEECCCSSCEEEEEECS
T ss_pred             ------------ecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeecc----ccceeEEEeeccCCCCCCEEEEEECC
Confidence                        111246777 999999999865 567788999999997    333221 1122346889999999999


Q ss_pred             CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C-CEEEEEe-CCeE
Q 005342          452 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKI  527 (701)
Q Consensus       452 dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~-~~l~s~s-dg~I  527 (701)
                      +|++|++|+.||.|++||+                     .+++.+.. + .+|...|.+++|+  + .++++++ ||.|
T Consensus       150 dg~~l~sgs~dg~v~iwd~---------------------~~~~~~~~-~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v  206 (357)
T 4g56_B          150 DGTQAVSGGKDFSVKVWDL---------------------SQKAVLKS-Y-NAHSSEVNCVAACPGKDTIFLSCGEDGRI  206 (357)
T ss_dssp             SSSEEEEEETTSCEEEEET---------------------TTTEEEEE-E-CCCSSCEEEEEECTTCSSCEEEEETTSCE
T ss_pred             CCCEEEEEeCCCeEEEEEC---------------------CCCcEEEE-E-cCCCCCEEEEEEccCCCceeeeeccCCce
Confidence            9999999999999999955                     55665543 3 4789999999998  4 4788888 9999


Q ss_pred             EEEeCCCCcEEEEec--CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC-CEEE
Q 005342          528 SIFSLETFQTLATFA--NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLV  602 (701)
Q Consensus       528 ~iwd~~~~~~~~~~~--~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg-~~l~  602 (701)
                      ++||+++++....+.  .+...+++++|+|++  ++++|+.|+.|++||+++++.+..+.+|...|++++|+|++ ++||
T Consensus       207 ~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la  286 (357)
T 4g56_B          207 LLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLA  286 (357)
T ss_dssp             EECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEE
T ss_pred             EEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEE
Confidence            999999988766553  456779999999986  89999999999999999999999999999999999999987 5899


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC-CCCEEEEE-ecCeEEEEECCCC
Q 005342          603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-HEGQIDVYEAPTL  668 (701)
Q Consensus       603 s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp-dg~~l~sg-~Dg~I~iwd~~~g  668 (701)
                      +|+.|++|+|||+++++..     . .. +|.   ..|++++|+| |+++|+++ .||+|++|++.+.
T Consensus       287 sgs~D~~i~iwd~~~~~~~-----~-~~-~H~---~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          287 SISEDCTVAVLDADFSEVF-----R-DL-SHR---DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEETTSCEEEECTTSCEEE-----E-EC-CCS---SCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEeCCCEEEEEECCCCcEe-----E-EC-CCC---CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            9999999999999997532     2 22 555   8999999999 79999985 8999999999653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.2e-36  Score=313.70  Aligned_cols=295  Identities=14%  Similarity=0.150  Sum_probs=238.1

Q ss_pred             CccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCC
Q 005342          315 DKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDS  386 (701)
Q Consensus       315 ~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~  386 (701)
                      ++.++..+|++|.+.|+  +++|+|+        +.|++|+|||+.+++.....                        ..
T Consensus        26 ~~~~l~~tL~GH~~~V~--~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~------------------------~~   79 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVT--QIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI------------------------PQ   79 (340)
T ss_dssp             CEEEEEEEECCCSSCEE--EEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE------------------------EE
T ss_pred             CceEEEEEECCccCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce------------------------ee
Confidence            34456778999999999  9999997        78999999999876543321                        12


Q ss_pred             ccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342          387 SCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH  465 (701)
Q Consensus       387 ~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i  465 (701)
                      ..+.+|.. |.+++|+|+|++|++|+.|+.|++|+..    ........   ..+...+....+++++.++++++.|+.+
T Consensus        80 ~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~s~d~~~  152 (340)
T 4aow_A           80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT----TGTTTRRF---VGHTKDVLSVAFSSDNRQIVSGSRDKTI  152 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TTEEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec----ccceeeee---cCCCCceeEEEEeecCccceeecCCCeE
Confidence            23678888 9999999999999999999999999997    44333311   2366788999999999999999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcEEEE
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLAT  540 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~~~~  540 (701)
                      ++||.                     ........ ...+|...+.+++++    +.++++++ |+.|++||+++++.+..
T Consensus       153 ~~~d~---------------------~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  210 (340)
T 4aow_A          153 KLWNT---------------------LGVCKYTV-QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN  210 (340)
T ss_dssp             EEECT---------------------TSCEEEEE-CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEe---------------------CCCceEEE-EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence            99965                     22222211 224788899999998    45678888 99999999999999999


Q ss_pred             ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342          541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      +.+|...|++++|+|++ ++++|+.||.|++||+++++.+..+.++ ..|.+++|+|++.++ +++.|+.|++||++++.
T Consensus       211 ~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~  288 (340)
T 4aow_A          211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKI  288 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCe
Confidence            99999999999999999 9999999999999999999999988855 679999999988755 56678999999999875


Q ss_pred             eeeeeeee---eccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342          620 KLCSKFLH---SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN  669 (701)
Q Consensus       620 ~~~~~~l~---~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~  669 (701)
                      ......-.   ....+|.   ..|++++|+|||++|++| .||.|+|||+.+|+
T Consensus       289 ~~~~~~~~~~~~~~~~h~---~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          289 IVDELKQEVISTSSKAEP---PQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEECCC-------CCC---CCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEEeccccceeeeccCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            43221111   0112444   889999999999999996 79999999999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.5e-36  Score=316.52  Aligned_cols=294  Identities=13%  Similarity=0.165  Sum_probs=230.3

Q ss_pred             ceeEEEeecCcceeeeEEEE-----cc-C-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCC
Q 005342          318 RLLSLIKQIMDWWVPYCINV-----MP-N-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSN  384 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~f-----sp-d-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~  384 (701)
                      ++...+.+|.+.|.  +++|     +| +       +.|++|++||+.++......           +.           
T Consensus        12 ~~~~~l~gH~~~V~--~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~-----------~~-----------   67 (343)
T 2xzm_R           12 VKRGILEGHSDWVT--SIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-----------GI-----------   67 (343)
T ss_dssp             EEEEEEECCSSCEE--EEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-----------EE-----------
T ss_pred             eeeeeeccchhhhh--heeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-----------cc-----------
Confidence            56678999999999  9999     66 5       88999999999765432210           00           


Q ss_pred             CCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC
Q 005342          385 DSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA  463 (701)
Q Consensus       385 ~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg  463 (701)
                      ....+.+|.. |.+++|+|++.++++|+.|++|++||+.    ++++..   .+.+|...|.+++|+|++++|++++.|+
T Consensus        68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~----~~~~~~---~~~~h~~~v~~v~~sp~~~~l~s~~~d~  140 (343)
T 2xzm_R           68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR----TGTTYK---RFVGHQSEVYSVAFSPDNRQILSAGAER  140 (343)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETT----SSCEEE---EEECCCSCEEEEEECSSTTEEEEEETTS
T ss_pred             ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECC----CCcEEE---EEcCCCCcEEEEEECCCCCEEEEEcCCC
Confidence            1122568888 9999999999999999999999999998    555443   2346899999999999999999999999


Q ss_pred             cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C----------CEEEEEe-CCeEEEE
Q 005342          464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G----------SHLFSAS-GGKISIF  530 (701)
Q Consensus       464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~----------~~l~s~s-dg~I~iw  530 (701)
                      .|++||+..                     ..........+|...|.+++|+  +          .++++++ ||.|++|
T Consensus       141 ~i~~wd~~~---------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  199 (343)
T 2xzm_R          141 EIKLWNILG---------------------ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW  199 (343)
T ss_dssp             CEEEEESSS---------------------CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred             EEEEEeccC---------------------CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence            999997632                     1111111113678899999998  3          6899999 9999999


Q ss_pred             eCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 005342          531 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA  608 (701)
Q Consensus       531 d~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~  608 (701)
                      |. +++....+.+|...|.+++|+|+| +|++|+.||.|++||+.+ ......+. +...|++++|+|++++++++ .|+
T Consensus       200 d~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~  276 (343)
T 2xzm_R          200 NT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQ  276 (343)
T ss_dssp             ET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESS
T ss_pred             cC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCC
Confidence            94 567778888999999999999999 999999999999999954 44444443 55679999999999988755 577


Q ss_pred             eEEEEECCCCeeeeeeeeeec-------cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342          609 QLCVWDAVGWKKLCSKFLHSF-------QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN  669 (701)
Q Consensus       609 ~I~vwd~~~g~~~~~~~l~~~-------~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~  669 (701)
                      .|++||+.+++......+...       ..+|.   ..|++++|+|+|++|++| .||+|++|++.+|+
T Consensus       277 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          277 GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN---PQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC---CCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             CEEEEEeCCCCCCceEEeecCcchhhhhhcCCC---CceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            899999988653321122100       01344   789999999999999996 79999999987654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.2e-36  Score=311.81  Aligned_cols=262  Identities=17%  Similarity=0.167  Sum_probs=226.4

Q ss_pred             ccCCCc-eEEEEEcCC----CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC
Q 005342          389 FNDNNQ-SRESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA  463 (701)
Q Consensus       389 l~~h~~-V~~l~~spd----g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg  463 (701)
                      +.+|.. |++++|+|+    +.+|++|+.|++|++|++.    .+.... .....+|...|.+++|+|++..+++++.|+
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~----~~~~~~-~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR----DERLDL-QWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEE----TTEEEE-EEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECC----CCCeee-eeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            458999 999999985    6799999999999999997    343221 223457999999999999999999999999


Q ss_pred             cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE
Q 005342          464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT  540 (701)
Q Consensus       464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~  540 (701)
                      .|++||+                     .+++.+.. + ..+...+.+++|+  ++++++++ ||.|++||+++++....
T Consensus       103 ~i~lWd~---------------------~~~~~~~~-~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~  159 (321)
T 3ow8_A          103 HIRLWDL---------------------ENGKQIKS-I-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS  159 (321)
T ss_dssp             EEEEEET---------------------TTTEEEEE-E-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred             cEEEEEC---------------------CCCCEEEE-E-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence            9999965                     55554432 2 3567788899999  89999999 99999999999999999


Q ss_pred             ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342          541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      +..+...+.+++|+|+| ++++|+.||.|++||+++++.+..+.+|..+|++++|+|++++|++|+.|++|++||+++++
T Consensus       160 ~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred             ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence            99899999999999999 99999999999999999999999999999999999999999999999999999999999875


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV  687 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~  687 (701)
                      ..  ..+.    +|.   ..|.+++|+|++++|+++ .|++|++||+.++++++++.+    |.+++|+|...
T Consensus       240 ~~--~~~~----~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~  303 (321)
T 3ow8_A          240 LA--GTLS----GHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS  303 (321)
T ss_dssp             EE--EEEC----CCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             ee--EEEc----CCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            32  2222    665   889999999999999996 799999999999999999876    99999998643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.5e-36  Score=309.21  Aligned_cols=259  Identities=13%  Similarity=0.171  Sum_probs=221.7

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .+.+|.. |.+++|+|+|++|++|+.||.|++||+.    ++....   ....|...|.+++|+|++++|++|+.|+.|+
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~----~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE----TQVEVR---SIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT----TTEEEE---EEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECC----CCceeE---EeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence            3678888 9999999999999999999999999997    554333   2234788999999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC-cEEEEec
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFA  542 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~-~~~~~~~  542 (701)
                      +||+                     .+++.+.. + .+|...|.+++|+  +.++++|+ |+.|++||++++ .....+.
T Consensus        81 vwd~---------------------~~~~~~~~-~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  137 (304)
T 2ynn_A           81 VFNY---------------------NTGEKVVD-F-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE  137 (304)
T ss_dssp             EEET---------------------TTCCEEEE-E-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred             EEEC---------------------CCCcEEEE-E-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence            9965                     45554432 2 4799999999999  88999999 999999999887 4567788


Q ss_pred             CCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCC
Q 005342          543 NPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       543 ~~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~sp--dg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +|...|.+++|+| ++ .+++|+.|++|++||++++.....+. +|...+..++|+|  ++++|++|+.|++|++||+++
T Consensus       138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence            9999999999999 56 99999999999999998877665554 4667899999987  778999999999999999999


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEee
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~  685 (701)
                      ++..  ..+.    +|.   ..|.+++|+|++++|++| .||+|++||+.++++++++..    +.+++|+|.
T Consensus       218 ~~~~--~~~~----~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  281 (304)
T 2ynn_A          218 KSCV--ATLE----GHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT  281 (304)
T ss_dssp             TEEE--EEEE----CCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred             Cccc--eeeC----CCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence            7532  3333    665   899999999999999996 799999999999999999986    888888765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-35  Score=314.96  Aligned_cols=268  Identities=13%  Similarity=0.118  Sum_probs=225.2

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +.+|.. |++++|+|++++|++|+.|++|++||..    ++....   ....|...|.+++|+|+|.++++|+.|+.+++
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~----~~~~~~---~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v  132 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF----TTNKEH---AVTMPCTWVMACAYAPSGCAIACGGLDNKCSV  132 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TCCEEE---EEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC----CCCcce---EEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence            578988 9999999999999999999999999987    443332   11236788999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      |++.....               ......... + ..|...|.+++|+  +..+++++ |++|++||+++++.+..+.+|
T Consensus       133 ~~~~~~~~---------------~~~~~~~~~-~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h  195 (354)
T 2pbi_B          133 YPLTFDKN---------------ENMAAKKKS-V-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH  195 (354)
T ss_dssp             EECCCCTT---------------CCSGGGCEE-E-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEecccc---------------cccccccee-e-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC
Confidence            98743211               000000000 1 3588999999999  77899999 999999999999999999999


Q ss_pred             CCCeEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          545 PPIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       545 ~~~i~~l~~sp--dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      ...|.+++++|  +| .+++|+.||.|++||+++++.+..+.+|...|++++|+|++++|++|+.|++|++||+++++..
T Consensus       196 ~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~  275 (354)
T 2pbi_B          196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV  275 (354)
T ss_dssp             SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            99999999988  46 9999999999999999999999999999999999999999999999999999999999987532


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV  687 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~  687 (701)
                      .  .+. . ..+.   ..+.+++|+|+|++|++| .|++|++||+.+++.+..+.+    |++++|+|+..
T Consensus       276 ~--~~~-~-~~~~---~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~  339 (354)
T 2pbi_B          276 A--IYS-K-ESII---FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGT  339 (354)
T ss_dssp             E--EEC-C-TTCC---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS
T ss_pred             E--EEc-C-CCcc---cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCC
Confidence            2  111 1 1122   578999999999999997 799999999999999998877    99999998753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.1e-35  Score=313.92  Aligned_cols=290  Identities=13%  Similarity=0.134  Sum_probs=230.5

Q ss_pred             ecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCC-CCccccCCCc-eE
Q 005342          325 QIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSN-DSSCFNDNNQ-SR  396 (701)
Q Consensus       325 ~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~-~~~~l~~h~~-V~  396 (701)
                      +|.+.|.  +++||||      +.++++++|++.++..+..          +.++......  ... .......+.. |.
T Consensus        62 ~h~~~V~--~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~----------l~~~~~~~~~--~~~~~~~~~~~~~~~v~  127 (393)
T 1erj_A           62 DHTSVVC--CVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR----------LSDDSAANKD--PENLNTSSSPSSDLYIR  127 (393)
T ss_dssp             ECSSCCC--EEEECTTSSEEEEECBSCEEEEETTTCCEEEE----------ECC-------------------CCCCBEE
T ss_pred             CCCCEEE--EEEECCCCCEEEEEcCCcEEEEEecCCCEEEE----------ecCccccccc--cccccccccCCCceeEE
Confidence            6999999  9999999      6689999999999988776          3332110000  000 0001123444 99


Q ss_pred             EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342          397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  476 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  476 (701)
                      +++|+|+|++|++|+.|+.|++||+.    .+++..   ...+|...|.+++|+|++++|++++.|+.|++||+      
T Consensus       128 ~v~~s~dg~~l~s~~~d~~i~iwd~~----~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~------  194 (393)
T 1erj_A          128 SVCFSPDGKFLATGAEDRLIRIWDIE----NRKIVM---ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL------  194 (393)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET------
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECC----CCcEEE---EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEEC------
Confidence            99999999999999999999999997    554443   33468999999999999999999999999999965      


Q ss_pred             ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEe-------cCCC
Q 005342          477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF-------ANPP  545 (701)
Q Consensus       477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~-------~~~~  545 (701)
                                     .+++.... +  .+...+.+++++   +.++++|+ ||.|++||++++..+..+       .+|.
T Consensus       195 ---------------~~~~~~~~-~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~  256 (393)
T 1erj_A          195 ---------------RTGQCSLT-L--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK  256 (393)
T ss_dssp             ---------------TTTEEEEE-E--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS
T ss_pred             ---------------CCCeeEEE-E--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC
Confidence                           44553322 2  245679999998   78999999 999999999999887776       5788


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC------------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTK------------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV  612 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~------------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v  612 (701)
                      ..|.+++|+|+| ++++|+.|+.|++||+++.            .....+.+|...|.+++|+|++++|++|+.|+.|++
T Consensus       257 ~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~i  336 (393)
T 1erj_A          257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF  336 (393)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            899999999999 9999999999999999753            345677899999999999999999999999999999


Q ss_pred             EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC------CCCEEEEE-ecCeEEEEECCCC
Q 005342          613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------DQIHLLSI-HEGQIDVYEAPTL  668 (701)
Q Consensus       613 wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp------dg~~l~sg-~Dg~I~iwd~~~g  668 (701)
                      ||+.+++..  ..+.    +|.   ..|.+++|+|      ++++|++| .||+|+||++.+.
T Consensus       337 wd~~~~~~~--~~l~----~h~---~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          337 WDKKSGNPL--LMLQ----GHR---NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EETTTCCEE--EEEE----CCS---SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EECCCCeEE--EEEC----CCC---CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            999998633  2233    665   8999999986      68889986 7999999998643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-34  Score=300.06  Aligned_cols=280  Identities=15%  Similarity=0.213  Sum_probs=235.5

Q ss_pred             cceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342          317 SRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF  389 (701)
Q Consensus       317 ~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l  389 (701)
                      ..+...+.+|.+.|.  +++|+|+       +.|++|++|++.+++....                             +
T Consensus        13 ~~~~~~~~gh~~~v~--~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-----------------------------~   61 (312)
T 4ery_A           13 YALKFTLAGHTKAVS--SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-----------------------------I   61 (312)
T ss_dssp             CEEEEEECCCSSCEE--EEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------------------E
T ss_pred             ceeEEEEcccCCcEE--EEEECCCCCEEEEeeCCCeEEEEeCCCcccchh-----------------------------h
Confidence            456678899999999  9999999       7899999999988876655                             2


Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      .+|.. |.+++|+|++++|++|+.|+.|++||+.    .+++..   ...+|...|.+++|+|+++++++|+.||.|++|
T Consensus        62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~----~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw  134 (312)
T 4ery_A           62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS----SGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW  134 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TCCEEE---EEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC----CCcEEE---EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence            36677 9999999999999999999999999998    555443   223588999999999999999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec-CC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NP  544 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~-~~  544 (701)
                      |+                     .+++.+.. + ..|..+|.+++|+  ++++++++ ||.|++||+++++.+..+. .+
T Consensus       135 d~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  191 (312)
T 4ery_A          135 DV---------------------KTGKCLKT-L-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD  191 (312)
T ss_dssp             ET---------------------TTCCEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred             EC---------------------CCCEEEEE-e-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccC
Confidence            65                     44444332 2 4688899999999  88999999 9999999999998877764 45


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEE--EEEe-cCCCEEEEEeCCCeEEEEECCCCee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC--LAYS-LSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~--v~~s-pdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      ...+..++|+|++ ++++++.||.|++||+++++.+..+.+|...+.+  ..++ +++.+|++|+.||.|++||+.+++.
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~  271 (312)
T 4ery_A          192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI  271 (312)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh
Confidence            6789999999999 9999999999999999999999999988765433  3444 5788999999999999999999753


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE---ecCeEEEEECC
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAP  666 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg---~Dg~I~iwd~~  666 (701)
                      .  ..+.    +|.   ..|.+++|+|++++++++   .|++|++|+..
T Consensus       272 ~--~~~~----~h~---~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          272 V--QKLQ----GHT---DVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             E--EEEC----CCS---SCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             h--hhhh----ccC---CcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            2  2222    565   899999999999999985   49999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=310.00  Aligned_cols=239  Identities=13%  Similarity=0.094  Sum_probs=199.9

Q ss_pred             eecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eE
Q 005342          324 KQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SR  396 (701)
Q Consensus       324 ~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~  396 (701)
                      ..|...|.  +++|+|+      +.||+|+|||+.+++++...                         ...+.+|.. |+
T Consensus        79 ~~~~~~v~--~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~-------------------------~~~~~~H~~~V~  131 (344)
T 4gqb_B           79 VQTEAGVA--DLTWVGERGILVASDSGAVELWELDENETLIVS-------------------------KFCKYEHDDIVS  131 (344)
T ss_dssp             EEESSCEE--EEEEETTTEEEEEETTSEEEEEEECTTSSCEEE-------------------------EEEEECCSSCEE
T ss_pred             eccCCCEE--EEEEeCCCeEEEEECCCEEEEEeccCCCceeEe-------------------------eccccCCCCCEE
Confidence            44566788  9999999      89999999999999877651                         223568998 99


Q ss_pred             EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEEecCCCCc
Q 005342          397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~  475 (701)
                      +++|+|+|++|++|+.|++|++||+.    ++++..   .+.+|...|.+++|+|++. .+++|+.||.|++||+     
T Consensus       132 ~v~~spdg~~l~sgs~d~~i~iwd~~----~~~~~~---~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~-----  199 (344)
T 4gqb_B          132 TVSVLSSGTQAVSGSKDICIKVWDLA----QQVVLS---SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT-----  199 (344)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET-----
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECC----CCcEEE---EEcCcCCceEEEEecCCCCCceeeeccccccccccc-----
Confidence            99999999999999999999999998    665554   4457999999999999985 6789999999999976     


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF  551 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l  551 (701)
                                      .+++.........+...+.+++|+   +.++++|+ ||.|++||+++++.+.++.+|...|+++
T Consensus       200 ----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v  263 (344)
T 4gqb_B          200 ----------------RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL  263 (344)
T ss_dssp             ----------------TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred             ----------------cccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence                            333332221113456678999998   56888888 9999999999999999999999999999


Q ss_pred             EEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCC
Q 005342          552 ILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       552 ~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~-~l~s~s~D~~I~vwd~~~g  618 (701)
                      +|+|++  +|++|+.|++|++||+.++++. .+.+|.+.|++++|+|+++ +|+|||.|++|++|++.+.
T Consensus       264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          264 VFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            999998  7999999999999999988765 5789999999999999886 6789999999999999874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.9e-35  Score=316.32  Aligned_cols=274  Identities=12%  Similarity=0.092  Sum_probs=222.3

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      |.+|.. |++++|+|+|++|++|+.|++|++||+.    +++...   ....|...|.+++|+|+|+++++|+.|+.+++
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~----~~~~~~---~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL----TSQKTH---AIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT----TTEEEE---EEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCccce---EEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            568888 9999999999999999999999999997    554333   22358889999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEe--
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF--  541 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~--  541 (701)
                      ||+.......               ....... ...+|...|.++.|+   +..+++|+ |++|++||+.+++.+..+  
T Consensus       135 w~~~~~~~~~---------------~~~~~~~-~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~  198 (380)
T 3iz6_a          135 FNLSSQADRD---------------GNMPVSR-VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS  198 (380)
T ss_dssp             EECCCCSSCC---------------CSSTTCC-BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred             EECCCCcccc---------------CCcccee-eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec
Confidence            9985432111               0000111 124788999999998   55799999 999999999999988877  


Q ss_pred             ---cCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCC-CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342          542 ---ANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       542 ---~~~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~-~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~  615 (701)
                         .+|...|.+++++| ++ ++++|+.|++|++||++ .++.+..+.+|.+.|++++|+|++++|++|+.|++|++||+
T Consensus       199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~  278 (380)
T 3iz6_a          199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM  278 (380)
T ss_dssp             CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEET
T ss_pred             ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEEC
Confidence               57888999999987 66 99999999999999998 45788899999999999999999999999999999999999


Q ss_pred             CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee----e----eeEEEEEeeE
Q 005342          616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL----L----ISHIMFVQIV  686 (701)
Q Consensus       616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~----~----i~~~~fs~~~  686 (701)
                      ++++........  ......+...|++++|+|+|+++++| .||.|++||+.+++.+..+.    +    |++++|+|+.
T Consensus       279 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  356 (380)
T 3iz6_a          279 RTGHQLQVYNRE--PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG  356 (380)
T ss_dssp             TTTEEEEEECCC--CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred             CCCcEEEEeccc--ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence            998644321111  00000011458999999999999997 79999999999999887762    2    9999999875


Q ss_pred             E
Q 005342          687 V  687 (701)
Q Consensus       687 ~  687 (701)
                      .
T Consensus       357 ~  357 (380)
T 3iz6_a          357 S  357 (380)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.5e-34  Score=297.30  Aligned_cols=264  Identities=14%  Similarity=0.182  Sum_probs=222.6

Q ss_pred             ccCCCc-eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342          389 FNDNNQ-SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i  465 (701)
                      |.+|.. |++++|+|++ ++|++|+.|++|++|++...... +....   .+.+|...|.+++|+|+|+++++|+.|++|
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~---~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR---SFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEE---EEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccce---EEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            678999 9999999965 89999999999999998632110 11111   234689999999999999999999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      ++||+                     .+++.+.. + .+|...|.+++|+  +.++++++ |+.|++||++ +..+..+.
T Consensus        90 ~~wd~---------------------~~~~~~~~-~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~  145 (319)
T 3frx_A           90 RLWDV---------------------ATGETYQR-F-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL  145 (319)
T ss_dssp             EEEET---------------------TTTEEEEE-E-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred             EEEEC---------------------CCCCeeEE-E-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe
Confidence            99965                     55555433 2 4799999999999  88999999 9999999995 56778888


Q ss_pred             CCCCCeEEEEEcC------CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342          543 NPPPIATYFILLP------QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       543 ~~~~~i~~l~~sp------dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~  615 (701)
                      +|...+.+++++|      ++ .+++|+.|+.|++||+++++....+.+|...|++++|+|+|++|++|+.|++|++||+
T Consensus       146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~  225 (319)
T 3frx_A          146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL  225 (319)
T ss_dssp             CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            9999999999998      45 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee------------eeEEEEE
Q 005342          616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL------------ISHIMFV  683 (701)
Q Consensus       616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~------------i~~~~fs  683 (701)
                      .+++...  .+.    ++    ..|.+++|+|++.+++++.++.+++|++..+..+..+..            +.+++||
T Consensus       226 ~~~~~~~--~~~----~~----~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  295 (319)
T 3frx_A          226 AAKKAMY--TLS----AQ----DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS  295 (319)
T ss_dssp             TTTEEEE--EEE----CC----SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC
T ss_pred             CCCcEEE--Eec----CC----CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEEC
Confidence            9975332  222    33    789999999999999999888899999988877766532            7899999


Q ss_pred             eeEEee
Q 005342          684 QIVVKF  689 (701)
Q Consensus       684 ~~~~~f  689 (701)
                      |+...+
T Consensus       296 pdg~~l  301 (319)
T 3frx_A          296 ADGQTL  301 (319)
T ss_dssp             TTSSEE
T ss_pred             CCCCEE
Confidence            875433

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.9e-33  Score=308.94  Aligned_cols=315  Identities=14%  Similarity=0.138  Sum_probs=254.3

Q ss_pred             ceeEEEeecCcce-eeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccC
Q 005342          318 RLLSLIKQIMDWW-VPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFND  391 (701)
Q Consensus       318 ~~~~~l~~h~~~v-~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~  391 (701)
                      .....+.+|.+.+ .  ++.|+++     +.|++|++||+.+++.+..+                             .+
T Consensus       112 ~~~~~l~~h~~~v~~--~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~-----------------------------~~  160 (464)
T 3v7d_B          112 PQRTTLRGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQL-----------------------------SG  160 (464)
T ss_dssp             CEEEEEECCSSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEE-----------------------------CC
T ss_pred             cceEEEcCCCCCcEE--EEEECCCEEEEEcCCCcEEEEECCCCcEEEEE-----------------------------eC
Confidence            4567889998875 5  8888887     89999999999998877662                             46


Q ss_pred             CCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEe--cCCCEEEEEECCCcEEEE
Q 005342          392 NNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS--HSGDFLVALTQTATHKLW  468 (701)
Q Consensus       392 h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~s--pdg~~l~s~s~dg~i~vw  468 (701)
                      |.. |++++|+|++ .+++|+.||+|++||+.    ++++..   ...+|...|.+++|+  +++.++++|+.||.+++|
T Consensus       161 h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~----~~~~~~---~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw  232 (464)
T 3v7d_B          161 HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK----KGCCTH---VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW  232 (464)
T ss_dssp             CSSCEEEEEECSTT-EEEEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred             CCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC----CCcEEE---EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence            777 9999999998 99999999999999998    565444   334689999999999  577899999999999999


Q ss_pred             ecCCCCcccccc-ccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342          469 KWQSNKQSLEEE-NVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPP  545 (701)
Q Consensus       469 d~~~~~~~~g~~-~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~  545 (701)
                      |+.+........ ........+.+.... +..  ...+|...+.++..+++++++++ ||.|++||+.+++.+..+.+|.
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  310 (464)
T 3v7d_B          233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVG--VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  310 (464)
T ss_dssp             ECCCCCCC------CCSSEEESCGGGCTTEEE--EECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             eCCCCcccccccccCCcceEeeccCCCeEEEE--EccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            997654311000 000011111111111 222  22478889998876699999999 9999999999999999999999


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      ..|.+++|+|++ .+++|+.||.|++||+++++.+..+.+|...|.+++|+  ++++++++.||+|++||+.++....  
T Consensus       311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~--  386 (464)
T 3v7d_B          311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--  386 (464)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE--
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee--
Confidence            999999999999 99999999999999999999999999999999999997  5899999999999999999875321  


Q ss_pred             eeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee-e----eeEEEEEee
Q 005342          625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL-L----ISHIMFVQI  685 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~-~----i~~~~fs~~  685 (701)
                        . .  ++.   ..+..++|+|+++++++|.||.|++||+.+|+.++... +    |.+++|++.
T Consensus       387 --~-~--~~~---~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~  444 (464)
T 3v7d_B          387 --S-Y--HHT---NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK  444 (464)
T ss_dssp             --E-E--ECT---TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEETT
T ss_pred             --e-e--cCC---CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEecCC
Confidence              1 1  222   66788999999999999889999999999999988632 2    889998643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.3e-34  Score=300.91  Aligned_cols=270  Identities=13%  Similarity=0.130  Sum_probs=215.8

Q ss_pred             ccCCCc--eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          389 FNDNNQ--SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       389 l~~h~~--V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      +.+|..  |++++|+|+|++||+|+.|++|++|++.    .+..........+|...|.+++|+|+|++|++|+.|+.++
T Consensus        11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~----~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~   86 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTE----GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC   86 (345)
T ss_dssp             ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEE----TTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcC----CCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence            456664  9999999999999999999999999997    4432221112346899999999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc---EEEE
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---TLAT  540 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~---~~~~  540 (701)
                      +|+...                   ....++.. + .+|...|.+++|+  +++|++++ |+.|++||+.++.   .+..
T Consensus        87 iw~~~~-------------------~~~~~~~~-~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  145 (345)
T 3fm0_A           87 IWKKNQ-------------------DDFECVTT-L-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV  145 (345)
T ss_dssp             EEEECC-------------------C-EEEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             EEEccC-------------------CCeEEEEE-c-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE
Confidence            997622                   11122221 3 4799999999999  89999999 9999999998763   4667


Q ss_pred             ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc--eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +.+|...|.+++|+|++ ++++|+.|+.|++||.++++  ....+.+|...|++++|+|+|++|++|+.|++|++||...
T Consensus       146 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence            88899999999999999 99999999999999998775  4578899999999999999999999999999999999743


Q ss_pred             Ceee----------eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce--------e-eeeee-
Q 005342          618 WKKL----------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH--------T-SQVLL-  676 (701)
Q Consensus       618 g~~~----------~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~--------~-~~l~~-  676 (701)
                      ....          ....+..+...|.   ..|++++|+|++..|+++ .|+.|++|+...+..        . ....+ 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  302 (345)
T 3fm0_A          226 PGNEQGVACSGSDPSWKCICTLSGFHS---RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH  302 (345)
T ss_dssp             TTCTTCCCCC---CEEEEEEEECSSCS---SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred             CCCCccceeeccCCccceeEEecCCCC---CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence            2100          0122333444465   899999999999999985 899999999876531        1 11122 


Q ss_pred             ---eeEEEEEeeE
Q 005342          677 ---ISHIMFVQIV  686 (701)
Q Consensus       677 ---i~~~~fs~~~  686 (701)
                         |++++|+|..
T Consensus       303 ~~~V~~v~~~p~~  315 (345)
T 3fm0_A          303 SQDVNCVAWNPKE  315 (345)
T ss_dssp             SSCEEEEEECSSS
T ss_pred             cCcEeEeEEeCCC
Confidence               9999999863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-34  Score=307.11  Aligned_cols=331  Identities=11%  Similarity=0.048  Sum_probs=244.8

Q ss_pred             cccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEec----cCCcc------ccccccccCCCCC
Q 005342          308 KLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDF----PTVSN------LRYASSILTDKPN  369 (701)
Q Consensus       308 ~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~----~~~~~------~~~~~~~~~~~~~  369 (701)
                      .+.+|++...........|.+.|.  +++|+|+        +.|+.|++||+    .++..      ...+      ...
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~------~~~   97 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKLDNIV--SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL------RHP   97 (425)
T ss_dssp             --------CCCEECEEEEECSCCS--EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE------ECC
T ss_pred             ccccccchhhhhheeeeeccCceE--EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccc------ccc
Confidence            346777766665555566778999  9999998        67899999999    88873      2221      000


Q ss_pred             CCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEE
Q 005342          370 QEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLI  448 (701)
Q Consensus       370 ~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~  448 (701)
                      +.++             ....+|.. |.+++|+|++++|++|+.||.|++|+.     .+....   ....|...|.+++
T Consensus        98 ~~~~-------------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-----~~~~~~---~~~~~~~~v~~~~  156 (425)
T 1r5m_A           98 FALS-------------ASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-----TGALLN---VLNFHRAPIVSVK  156 (425)
T ss_dssp             CCCC-------------------CBCEEEEEECTTSSEEEEEETTSCEEEEET-----TSCEEE---EECCCCSCEEEEE
T ss_pred             cccc-------------ccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-----CCCeee---eccCCCccEEEEE
Confidence            1111             01235777 999999999999999999999999994     333333   2235889999999


Q ss_pred             EecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec-CCEEEEEe-C
Q 005342          449 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR-GSHLFSAS-G  524 (701)
Q Consensus       449 ~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-d  524 (701)
                      |+|++++|++++.||.+++||+.++..     .     ..+......  .............+.+++|+ +..+++++ +
T Consensus       157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (425)
T 1r5m_A          157 WNKDGTHIISMDVENVTILWNVISGTV-----M-----QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK  226 (425)
T ss_dssp             ECTTSSEEEEEETTCCEEEEETTTTEE-----E-----EEECCC---------------CCCBSCCEEEETTEEEEECGG
T ss_pred             ECCCCCEEEEEecCCeEEEEECCCCcE-----E-----EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC
Confidence            999999999999999999997744321     0     000000000  00000000112238889999 77888888 9


Q ss_pred             CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342          525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       525 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s  603 (701)
                      |.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.||.|++||+++++.+..+.+|...|.+++|+|++ ++++
T Consensus       227 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~  305 (425)
T 1r5m_A          227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVIS  305 (425)
T ss_dssp             GCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEE
T ss_pred             CeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEE
Confidence            999999999999999999999999999999999 99999999999999999999999999999999999999999 9999


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc-------------
Q 005342          604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN-------------  669 (701)
Q Consensus       604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~-------------  669 (701)
                      ++.|+.|++||+.+++...  .+.    .|.   ..|.+++|+|++++|+++ .||.|++||+.+++             
T Consensus       306 ~~~d~~i~i~d~~~~~~~~--~~~----~~~---~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  376 (425)
T 1r5m_A          306 CSMDGSVRLWSLKQNTLLA--LSI----VDG---VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGI  376 (425)
T ss_dssp             EETTSEEEEEETTTTEEEE--EEE----CTT---CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC------------
T ss_pred             EeCCCcEEEEECCCCcEeE--ecc----cCC---ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccc
Confidence            9999999999999975332  222    444   889999999999999996 79999999999888             


Q ss_pred             -------eeeeeee------eeEEEEEeeEE
Q 005342          670 -------HTSQVLL------ISHIMFVQIVV  687 (701)
Q Consensus       670 -------~~~~l~~------i~~~~fs~~~~  687 (701)
                             .+..+.+      |++++|+|+..
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  407 (425)
T 1r5m_A          377 LNPLPIPLYASYQSSQDNDYIFDLSWNCAGN  407 (425)
T ss_dssp             --CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred             cCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence                   7777764      78889987643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.8e-33  Score=290.93  Aligned_cols=293  Identities=14%  Similarity=0.150  Sum_probs=238.7

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG  380 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  380 (701)
                      +.+..|+...........+|.+.|.  +++|+|+      +.|+.|++||+.++.....+          ..        
T Consensus        31 ~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~----------~~--------   90 (337)
T 1gxr_A           31 DALIGPGIPRHARQINTLNHGEVVC--AVTISNPTRHVYTGGKGCVKVWDISHPGNKSPV----------SQ--------   90 (337)
T ss_dssp             TSSSSTTCCSEEEEEEEECCSSCCC--EEEECSSSSEEEEECBSEEEEEETTSTTCCSCS----------EE--------
T ss_pred             CcEeccccCCccccceeccCCCceE--EEEEecCCcEEEEcCCCeEEEEECCCCCceeee----------ec--------
Confidence            3455666555555555558999999  9999999      44999999999887654431          00        


Q ss_pred             CCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE
Q 005342          381 DDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL  459 (701)
Q Consensus       381 D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~  459 (701)
                            ....+|.. |.+++|+|++++|++++.|+.|++|++.    .++..... ....|...|.+++|+|++++++++
T Consensus        91 ------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~----~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~  159 (337)
T 1gxr_A           91 ------LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA----APTPRIKA-ELTSSAPACYALAISPDSKVCFSC  159 (337)
T ss_dssp             ------EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC----CC--EEEE-EEECSSSCEEEEEECTTSSEEEEE
T ss_pred             ------ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC----CCCcceee-ecccCCCceEEEEECCCCCEEEEE
Confidence                  00125777 9999999999999999999999999997    33311111 223478899999999999999999


Q ss_pred             ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc
Q 005342          460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ  536 (701)
Q Consensus       460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~  536 (701)
                      +.||.+++||+                     .+++.... + ..|...|.+++|+  ++++++++ ||.|++||+++++
T Consensus       160 ~~dg~v~~~d~---------------------~~~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          160 CSDGNIAVWDL---------------------HNQTLVRQ-F-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             ETTSCEEEEET---------------------TTTEEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eCCCcEEEEeC---------------------CCCceeee-e-ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence            99999999965                     45554432 2 4688899999999  88999999 9999999999999


Q ss_pred             EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342          537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       537 ~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~  615 (701)
                      .+..+. +...+.+++|+|++ .+++++.|+.|++||+++++.. .+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus       217 ~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~  294 (337)
T 1gxr_A          217 QLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             EEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence            888876 77889999999999 9999999999999999988764 56789999999999999999999999999999999


Q ss_pred             CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      .+++...  ..     .|.   ..+++++|+|++++|+++ .||.|++|++
T Consensus       295 ~~~~~~~--~~-----~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          295 PYGASIF--QS-----KES---SSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTCCEEE--EE-----ECS---SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCeEEE--Ee-----cCC---CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            9986432  11     233   889999999999999986 7999999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.5e-35  Score=359.65  Aligned_cols=355  Identities=15%  Similarity=0.146  Sum_probs=277.8

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc--
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL--  375 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--  375 (701)
                      +.|++||+.+++++..+.+|...|.  +++|+|+         +.|++|++||+.++.+...          +.+|..  
T Consensus       679 ~~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~----------~~~h~~~v  746 (1249)
T 3sfz_A          679 KKVKIWDSATGKLVHTYDEHSEQVN--CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT----------MFGHTNSV  746 (1249)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEE--EEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE----------ECCCSSCE
T ss_pred             CeEEEEECCCCceEEEEcCCCCcEE--EEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe----------ecCCCCCE
Confidence            8899999999999999999999999  9999995         7899999999999987766          333332  


Q ss_pred             -----------ccccC-CCC----C--C----------------------------------------------------
Q 005342          376 -----------DASSG-DDS----N--D----------------------------------------------------  385 (701)
Q Consensus       376 -----------~~s~~-D~~----~--~----------------------------------------------------  385 (701)
                                 +++++ |++    +  .                                                    
T Consensus       747 ~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~  826 (1249)
T 3sfz_A          747 NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDI  826 (1249)
T ss_dssp             EEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEET
T ss_pred             EEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEe
Confidence                       22222 211    0  0                                                    


Q ss_pred             --Ccc----ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342          386 --SSC----FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       386 --~~~----l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s  458 (701)
                        +..    ..+|.. |.+++|+|+++++++|+.|+.|++|++.    ++....   ...+|...|.+++|+|+|+++++
T Consensus       827 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~----~~~~~~---~~~~h~~~v~~v~~spdg~~l~s  899 (1249)
T 3sfz_A          827 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID----SRLKVA---DCRGHLSWVHGVMFSPDGSSFLT  899 (1249)
T ss_dssp             TTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT----TTEEEE---EECCCSSCEEEEEECTTSSEEEE
T ss_pred             cCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC----CCceee---ecCCCccceEEEEECCCCCEEEE
Confidence              000    126777 9999999999999999999999999997    554433   23468889999999999999999


Q ss_pred             EECCCcEEEEecCCCC----------------------------------------------------------------
Q 005342          459 LTQTATHKLWKWQSNK----------------------------------------------------------------  474 (701)
Q Consensus       459 ~s~dg~i~vwd~~~~~----------------------------------------------------------------  474 (701)
                      ++.||.+++|++....                                                                
T Consensus       900 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g  979 (1249)
T 3sfz_A          900 ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFG  979 (1249)
T ss_dssp             EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEE
T ss_pred             EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEE
Confidence            9999999999864210                                                                


Q ss_pred             ---------------c-----------------cccccccc----eeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CC
Q 005342          475 ---------------Q-----------------SLEEENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS  517 (701)
Q Consensus       475 ---------------~-----------------~~g~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~  517 (701)
                                     .                 +.|.....    ..+++|+..++....  + ..|...|.+++++ +.
T Consensus       980 ~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~--~-~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A          980 DEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--L-QAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp             ETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC--C-BCCSSCEEEEEECSSS
T ss_pred             cCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE--E-ecCCCcEEEEEEcCCC
Confidence                           0                 00000000    116667766666553  1 3567777777777 66


Q ss_pred             EEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe
Q 005342          518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS  595 (701)
Q Consensus       518 ~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s  595 (701)
                      .+++++ ||.|++||+.+++....+.+|...|++++|+|++ ++++|+.||+|++||+.+++.+..+.+|.+.|++++|+
T Consensus      1057 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s 1136 (1249)
T 3sfz_A         1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1136 (1249)
T ss_dssp             EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEEC
T ss_pred             cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEEC
Confidence            666776 7888888888888888888999999999999999 99999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCeeeeee-eee--eccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceee
Q 005342          596 LSLNVLVSSGADAQLCVWDAVGWKKLCSK-FLH--SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       596 pdg~~l~s~s~D~~I~vwd~~~g~~~~~~-~l~--~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~  672 (701)
                      |+|++|++|+.||+|++||+.+++..... +..  ....+|.   ..|++++|+|||+++++++ |.|++||+.+|+.+.
T Consensus      1137 ~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~ 1212 (1249)
T 3sfz_A         1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHG---GWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQ 1212 (1249)
T ss_dssp             SSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CC---SCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCC
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccC---ceEEEEEECCCCCEEEECC-CeEEEEECCCCceee
Confidence            99999999999999999999998644321 111  0112344   8899999999999998875 899999999999988


Q ss_pred             eeee----eeEEEEEeeEE
Q 005342          673 QVLL----ISHIMFVQIVV  687 (701)
Q Consensus       673 ~l~~----i~~~~fs~~~~  687 (701)
                      .+.+    |++++|+|+..
T Consensus      1213 ~~~~~~~~i~~~~~s~dg~ 1231 (1249)
T 3sfz_A         1213 TFYTNGTNLKKIHVSPDFR 1231 (1249)
T ss_dssp             CCCCSSCCCCCCEECSSSC
T ss_pred             eeeccCCcccEEEECCCCC
Confidence            8875    89999998753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.8e-34  Score=351.17  Aligned_cols=331  Identities=14%  Similarity=0.146  Sum_probs=280.1

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      +.|++||..+++.+..+.+|.+.|.  +++|+|+       +.|++|++||+.+++++..+                   
T Consensus       637 ~~i~vw~~~~~~~~~~~~~h~~~v~--~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-------------------  695 (1249)
T 3sfz_A          637 KTLQVFKAETGEKLLDIKAHEDEVL--CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-------------------  695 (1249)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEE--EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------------------
T ss_pred             CeEEEEECCCCCEEEEeccCCCCEE--EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE-------------------
Confidence            8999999999999999999999999  9999999       78999999999999877762                   


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcC--CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL  456 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~sp--dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l  456 (701)
                                .+|.. |++++|+|  ++.++++|+.|+.|++||+.    ++.+..   ...+|...|.+++|+|+|+++
T Consensus       696 ----------~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~----~~~~~~---~~~~h~~~v~~~~~sp~~~~l  758 (1249)
T 3sfz_A          696 ----------DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN----QKECRN---TMFGHTNSVNHCRFSPDDELL  758 (1249)
T ss_dssp             ----------ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT----SSSEEE---EECCCSSCEEEEEECSSTTEE
T ss_pred             ----------cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC----Ccchhh---eecCCCCCEEEEEEecCCCEE
Confidence                      36677 99999999  56689999999999999998    565544   334689999999999999999


Q ss_pred             EEEECCCcEEEEecCCCCc------------------------------ccccccc---ceeeEEeeCCCCeEEeecccC
Q 005342          457 VALTQTATHKLWKWQSNKQ------------------------------SLEEENV---NMESQLYQPSSKLVMTNDIAA  503 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~------------------------------~~g~~~~---~~~i~~~d~~~~~~~~~~~~~  503 (701)
                      ++++.||.|++||+.++..                              +.|....   ...+.+|+..++..... +..
T Consensus       759 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~-~~~  837 (1249)
T 3sfz_A          759 ASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE-IHT  837 (1249)
T ss_dssp             EEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE-EEC
T ss_pred             EEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE-EcC
Confidence            9999999999999876532                              1111111   11378999988886644 335


Q ss_pred             CCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-----
Q 005342          504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-----  574 (701)
Q Consensus       504 ~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~-----  574 (701)
                      +|...|.+++|+  +.++++++ ||.|++||+.++..+..+.+|...|++++|+|+| .+++++.||.|++||+.     
T Consensus       838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~  917 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN  917 (1249)
T ss_dssp             SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSC
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccccee
Confidence            788999999999  88999998 9999999999999999999999999999999999 99999999888888743     


Q ss_pred             --------------------------------------------------------------------------CCceEE
Q 005342          575 --------------------------------------------------------------------------TKKTKA  580 (701)
Q Consensus       575 --------------------------------------------------------------------------~~~~~~  580 (701)
                                                                                                +++...
T Consensus       918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~  997 (1249)
T 3sfz_A          918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS  997 (1249)
T ss_dssp             CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEE
T ss_pred             eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceee
Confidence                                                                                      233455


Q ss_pred             eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeE
Q 005342          581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI  660 (701)
Q Consensus       581 ~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I  660 (701)
                      .+.+|.+.|++++|+|+|+++++++.||.|++||+.+++...      +. +|.   ..|.++.|+|++.+++.+.|++|
T Consensus       998 ~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~------~~-~~~---~~v~~~~~~~~~~l~~~~~dg~v 1067 (1249)
T 3sfz_A          998 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF------LQ-AHQ---ETVKDFRLLQDSRLLSWSFDGTV 1067 (1249)
T ss_dssp             ECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC------CB-CCS---SCEEEEEECSSSEEEEEESSSEE
T ss_pred             ecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE------Ee-cCC---CcEEEEEEcCCCcEEEEECCCcE
Confidence            667899999999999999999999999999999999985331      22 444   89999999998877666799999


Q ss_pred             EEEECCCCceeeeeee----eeEEEEEeeE
Q 005342          661 DVYEAPTLNHTSQVLL----ISHIMFVQIV  686 (701)
Q Consensus       661 ~iwd~~~g~~~~~l~~----i~~~~fs~~~  686 (701)
                      ++||+.+++.+..+.+    |++++|+|+.
T Consensus      1068 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~ 1097 (1249)
T 3sfz_A         1068 KVWNVITGRIERDFTCHQGTVLSCAISSDA 1097 (1249)
T ss_dssp             EEEETTTTCCCEEEECCSSCCCCEEECSSS
T ss_pred             EEEECCCCceeEEEcccCCcEEEEEECCCC
Confidence            9999999999988886    9999999874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.3e-33  Score=299.96  Aligned_cols=288  Identities=10%  Similarity=0.077  Sum_probs=236.2

Q ss_pred             EeecCcceeeeEEEEccC-------CCCCeEEEEeccCCc--cccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          323 IKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVS--NLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       323 l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      +..|.+.|.  +++|+|+       +.|+.|++||+.+++  ....                             +.+|.
T Consensus         4 ~~~~~~~i~--~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-----------------------------~~~h~   52 (372)
T 1k8k_C            4 HSFLVEPIS--CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE-----------------------------LKEHN   52 (372)
T ss_dssp             EESCSSCCC--EEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE-----------------------------EECCS
T ss_pred             ecccCCCeE--EEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee-----------------------------ecCCC
Confidence            456888999  9999999       689999999998876  4443                             24677


Q ss_pred             c-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342          394 Q-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  472 (701)
Q Consensus       394 ~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  472 (701)
                      . |.+++|+|++++|++++.|+.|++||+.    .++..... ....|...|.+++|+|+++++++++.||.+++||+..
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~  127 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLK----GRTWKPTL-VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ  127 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEE----TTEEEEEE-ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECC----CCeeeeeE-EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC
Confidence            7 9999999999999999999999999997    55433211 2345788999999999999999999999999998733


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeC-----------------
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSL-----------------  532 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~-----------------  532 (701)
                                         .........+..+|...|.+++|+  ++++++++ ||.|++||+                 
T Consensus       128 -------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  188 (372)
T 1k8k_C          128 -------------------ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK  188 (372)
T ss_dssp             -------------------TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSC
T ss_pred             -------------------CCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccc
Confidence                               222111111334688999999999  88999999 999999995                 


Q ss_pred             -CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342          533 -ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL  610 (701)
Q Consensus       533 -~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I  610 (701)
                       .+++.+..+.+|...+.+++|+|++ ++++++.||.|++||+++++.+..+.+|...|.+++|+|+++++++| .|+.|
T Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i  267 (372)
T 1k8k_C          189 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFP  267 (372)
T ss_dssp             CCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSC
T ss_pred             cchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeE
Confidence             4678888998999999999999999 99999999999999999999999999999999999999999988877 89999


Q ss_pred             EEEECCC--Ceeeeeeee---------------------------------eeccCCCCCCCCCeEEEEEc-CCC---CE
Q 005342          611 CVWDAVG--WKKLCSKFL---------------------------------HSFQTGLVPETTIVNHIQFH-PDQ---IH  651 (701)
Q Consensus       611 ~vwd~~~--g~~~~~~~l---------------------------------~~~~~~~~~~~~~v~~v~~s-pdg---~~  651 (701)
                      ++|++.+  +.......+                                 ..+..+|.   ..|++++|+ ++|   ++
T Consensus       268 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~g~~~~~  344 (372)
T 1k8k_C          268 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHK---NSVSQISVLSGGKAKCSQ  344 (372)
T ss_dssp             EEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSS---SCEEEEEEEESTTTSCSE
T ss_pred             EEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccccccc---CCcceeEEecCCCcceee
Confidence            9999988  531111000                                 11333565   899999976 666   89


Q ss_pred             EEEE-ecCeEEEEECCCCc
Q 005342          652 LLSI-HEGQIDVYEAPTLN  669 (701)
Q Consensus       652 l~sg-~Dg~I~iwd~~~g~  669 (701)
                      |++| .||.|++||+.+++
T Consensus       345 l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          345 FCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEEETTSEEEEEEHHHHH
T ss_pred             EEEecCCCceEEEEecChh
Confidence            9996 79999999997754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-33  Score=327.48  Aligned_cols=293  Identities=16%  Similarity=0.176  Sum_probs=233.0

Q ss_pred             ceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF  389 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l  389 (701)
                      +....+++|.+.|.  +++|+|+        +.|++|++||+.++......                        ....+
T Consensus       373 ~~~~~l~~H~~~V~--~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~------------------------~~~~~  426 (694)
T 3dm0_A          373 VLKGTMRAHTDMVT--AIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV------------------------AQRRL  426 (694)
T ss_dssp             EEEEEEECCSSCEE--EEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE------------------------EEEEE
T ss_pred             chhhhcccCCceeE--EEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc------------------------cccee
Confidence            34457899999999  9999986        89999999999765432110                        11235


Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      .+|.. |.+++|+|+|++|++|+.|++|++||+.    .+.+..   ...+|...|.+++|+|++++|++|+.|++|++|
T Consensus       427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~----~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  499 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA----AGVSTR---RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW  499 (694)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TTEEEE---EEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC----CCccee---EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            68988 9999999999999999999999999997    554443   234689999999999999999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEec--C--CEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR--G--SHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s--~--~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      |...                     ...... ....+|...|.+++|+  +  ..+++++ |+.|++||+++++....+.
T Consensus       500 d~~~---------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~  558 (694)
T 3dm0_A          500 NTLG---------------------ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA  558 (694)
T ss_dssp             CTTS---------------------CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ECCC---------------------CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            7522                     111110 0113688899999999  3  5789999 9999999999999999999


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      +|...|++++|+|+| ++++|+.||.|++||+++++.+..+.. ...|.+++|+|++.++++++ |+.|++||+.+++..
T Consensus       559 ~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIV  636 (694)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCCh
Confidence            999999999999999 999999999999999999999888874 46799999999999888766 566999999998654


Q ss_pred             eeeeeeeccC--------CC---CCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          622 CSKFLHSFQT--------GL---VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       622 ~~~~l~~~~~--------~~---~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      ...... ...        ++   ..+...+++++|||||++|++| .||+|+||++..
T Consensus       637 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          637 EDLKVD-LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             EEECCC-CC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             hhhccc-cccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            322111 000        00   0001247899999999999996 899999999853

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5e-34  Score=306.33  Aligned_cols=315  Identities=14%  Similarity=0.130  Sum_probs=236.9

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN  392 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h  392 (701)
                      .+...+.+|.+.|.  +++|+|+     +.|++|++||+.++......          .             ....+.+|
T Consensus         7 ~~~~~~~~h~~~i~--~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----------~-------------~~~~~~~h   61 (397)
T 1sq9_A            7 ATANAGKAHDADIF--SVSACNSFTVSCSGDGYLKVWDNKLLDNENPK----------D-------------KSYSHFVH   61 (397)
T ss_dssp             EEEEESSCSSSCEE--EEEECSSEEEEEETTSEEEEEESBCCTTCCGG----------G-------------GEEEEECC
T ss_pred             hhhhhhhhhhcCeE--EEEecCCeEEEEcCCCEEEEEECCCcccccCC----------C-------------cceEEecC
Confidence            34566789999999  9999999     89999999999887622110          0             01124578


Q ss_pred             Cc-eEEEEEcCC----C---CeEEEEcCCCcEEEEeccccCCCCc--eeEeecCCCCC-----CCCEEEEEEe----cCC
Q 005342          393 NQ-SRESTSLPD----A---DSAVCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSF-----GGRVVRLIYS----HSG  453 (701)
Q Consensus       393 ~~-V~~l~~spd----g---~~l~s~s~d~~v~iw~~~~~~~~~~--~~~l~~~~~~~-----~~~v~~l~~s----pdg  453 (701)
                      .. |.+++|+|+    |   ++|++++.|+.|++|++........  ...    ...|     ...|.+++|+    |++
T Consensus        62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~  137 (397)
T 1sq9_A           62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK----LDLLDSDMKKHSFWALKWGASNDRLL  137 (397)
T ss_dssp             TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE----ECCSCTTGGGSCEEEEEEECCC----
T ss_pred             CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee----ecccccccCCCcEEEEEEeeccCCCC
Confidence            78 999999999    9   9999999999999999983221111  222    2235     4899999999    999


Q ss_pred             CE-EEEEECCCcEEEEecCCCCcc-ccccccceeeEEeeCCCCeEEe-ecccCCCCCCeEEEEec--CCEEEEEe-CCeE
Q 005342          454 DF-LVALTQTATHKLWKWQSNKQS-LEEENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR--GSHLFSAS-GGKI  527 (701)
Q Consensus       454 ~~-l~s~s~dg~i~vwd~~~~~~~-~g~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I  527 (701)
                      ++ +++++.||.|++||+...... .+....      |.+ .+.+.. ......|...|.+++|+  + ++++++ ||.|
T Consensus       138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i  209 (397)
T 1sq9_A          138 SHRLVATDVKGTTYIWKFHPFADESNSLTLN------WSP-TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV  209 (397)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTC------CCC-EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred             ceEEEEEeCCCcEEEEeCCccccccccceee------ccC-cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence            99 999999999999998551100 000000      000 001100 00113578899999999  7 888888 9999


Q ss_pred             EEEeCCCCcEEEEecC---C---CCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEeecC-------------
Q 005342          528 SIFSLETFQTLATFAN---P---PPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKG-------------  584 (701)
Q Consensus       528 ~iwd~~~~~~~~~~~~---~---~~~i~~l~~spdg-~l~~gs~d---g~I~iwd~~~~~~~~~l~~-------------  584 (701)
                      ++||+++++.+..+..   |   ...|.+++|+|++ ++++++.|   |.|++||+++++.+..+.+             
T Consensus       210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (397)
T 1sq9_A          210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA  289 (397)
T ss_dssp             EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred             EEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence            9999999999999998   8   9999999999999 99999999   9999999999999999998             


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCC------------CCCCCCeEEEEEcCCC---
Q 005342          585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL------------VPETTIVNHIQFHPDQ---  649 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~------------~~~~~~v~~v~~spdg---  649 (701)
                      |...|.+++|+|++++|++++.|+.|++||+.+++............+|            ..|...|++++|+|+|   
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~  369 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS  369 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence            9999999999999999999999999999999998644322211000022            0002899999999998   


Q ss_pred             -------CEEEEE-ecCeEEEEECCCCc
Q 005342          650 -------IHLLSI-HEGQIDVYEAPTLN  669 (701)
Q Consensus       650 -------~~l~sg-~Dg~I~iwd~~~g~  669 (701)
                             ++|+++ .||.|++||+.+|+
T Consensus       370 ~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          370 GMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             STTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccccceEEEecCCCcEEEEEcCCCC
Confidence                   788886 79999999998874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.2e-33  Score=317.85  Aligned_cols=352  Identities=9%  Similarity=0.069  Sum_probs=269.7

Q ss_pred             CcccccccCcc----ceeEEEeecCcc-eeeeEEEEcc--C-------CCCCeEEEEeccCC--------cccccccccc
Q 005342          307 DKLKFPSMDKS----RLLSLIKQIMDW-WVPYCINVMP--N-------ANNETISLKDFPTV--------SNLRYASSIL  364 (701)
Q Consensus       307 ~~i~iwd~~~~----~~~~~l~~h~~~-v~~~~l~fsp--d-------s~d~~i~lWd~~~~--------~~~~~~~~~~  364 (701)
                      +.|++||+.++    +....+.+|.+. |.  +++|+|  +       +.|++|++||+.++        .....     
T Consensus        39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~--~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-----  111 (615)
T 1pgu_A           39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVT--TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE-----  111 (615)
T ss_dssp             TEEEEEECCSSCCSSCSEEEECTTTTSCEE--EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE-----
T ss_pred             CeEEEEECCCCCCccccceEEecCCCceEE--EEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccch-----
Confidence            78999999999    999999999999 99  999999  7       78999999999865        33333     


Q ss_pred             CCCCCCCCCCc-------------ccccC-CC----C----CCCc---cccCCCc-eEEEEEcCCCC-eEEEEcCCCcEE
Q 005342          365 TDKPNQEGRPL-------------DASSG-DD----S----NDSS---CFNDNNQ-SRESTSLPDAD-SAVCAKSLEKSV  417 (701)
Q Consensus       365 ~~~~~~~~~~~-------------~~s~~-D~----~----~~~~---~l~~h~~-V~~l~~spdg~-~l~s~s~d~~v~  417 (701)
                           +.+|..             +++++ |.    .    +...   .+.+|.. |.+++|+|+++ .+++++.|+.|+
T Consensus       112 -----~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~  186 (615)
T 1pgu_A          112 -----FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV  186 (615)
T ss_dssp             -----EECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred             -----hhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEE
Confidence                 222222             22222 21    1    2222   2778999 99999999998 899999999999


Q ss_pred             EEeccccCCCCceeEeecCCCCCCC---CEEEEEEecC-CCEEEEEECCCcEEEEecCCCCc---c-c---cc-------
Q 005342          418 NLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQ---S-L---EE-------  479 (701)
Q Consensus       418 iw~~~~~~~~~~~~~l~~~~~~~~~---~v~~l~~spd-g~~l~s~s~dg~i~vwd~~~~~~---~-~---g~-------  479 (701)
                      +||+.    .+++..   ....|..   .|.+++|+|+ ++++++++.||.|++||+.++..   . .   ++       
T Consensus       187 vwd~~----~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~  259 (615)
T 1pgu_A          187 FYQGP----PFKFSA---SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL  259 (615)
T ss_dssp             EEETT----TBEEEE---EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEE
T ss_pred             EEeCC----Ccceee---eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEE
Confidence            99987    554443   2335777   8999999999 99999999999999999876654   1 1   11       


Q ss_pred             ------ccc----ceeeEEeeCCCCeEEeecccC---CCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          480 ------ENV----NMESQLYQPSSKLVMTNDIAA---DPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       480 ------~~~----~~~i~~~d~~~~~~~~~~~~~---~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                            ...    ...+++||..+++.+.. +..   .+...+.++.++ ++++++++ ||.|++||+.+++.+..+.+|
T Consensus       260 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~  338 (615)
T 1pgu_A          260 SWLDSQKFATVGADATIRVWDVTTSKCVQK-WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGH  338 (615)
T ss_dssp             EESSSSEEEEEETTSEEEEEETTTTEEEEE-EECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCC
T ss_pred             EEcCCCEEEEEcCCCcEEEEECCCCcEEEE-EcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCC
Confidence                  111    11389999998886543 211   124678888888 99999999 999999999988887777766


Q ss_pred             CCCeEEEEEcCC--------------------------------------------------------------------
Q 005342          545 PPIATYFILLPQ--------------------------------------------------------------------  556 (701)
Q Consensus       545 ~~~i~~l~~spd--------------------------------------------------------------------  556 (701)
                      ...|.+++| |+                                                                    
T Consensus       339 ~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~  417 (615)
T 1pgu_A          339 NKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANND  417 (615)
T ss_dssp             SSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSS
T ss_pred             CCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCC
Confidence            655555544 32                                                                    


Q ss_pred             --------------------------------------C-eEEEEeC-CCcEEEEeCCCCceE-EeecCCCCCeEEEEEe
Q 005342          557 --------------------------------------D-LFAFGFD-DSSILVHCPCTKKTK-AKLKGHQNRITCLAYS  595 (701)
Q Consensus       557 --------------------------------------g-~l~~gs~-dg~I~iwd~~~~~~~-~~l~~h~~~V~~v~~s  595 (701)
                                                            + ++++++. |+.|++||+.+++.. ..+.+|...|++++|+
T Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s  497 (615)
T 1pgu_A          418 GFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS  497 (615)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC
T ss_pred             CCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC
Confidence                                                  3 4444555 666666666665544 6677899999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC----------CCCEEEEE-ecCeEEEEE
Q 005342          596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP----------DQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       596 pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp----------dg~~l~sg-~Dg~I~iwd  664 (701)
                      |++++|++++.|+.|++||+.+++..     ..+...|.   ..|++++|+|          ++++|+++ .||.|++||
T Consensus       498 ~~g~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~  569 (615)
T 1pgu_A          498 PSETYIAAGDVMGKILLYDLQSREVK-----TSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS  569 (615)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEE-----ECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEcCCCCeEEEeeCCCCcce-----eEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence            99999999999999999999997532     22333265   8999999999          99999996 799999999


Q ss_pred             CCCC-ceeeeeee----eeEEEEEeeEE
Q 005342          665 APTL-NHTSQVLL----ISHIMFVQIVV  687 (701)
Q Consensus       665 ~~~g-~~~~~l~~----i~~~~fs~~~~  687 (701)
                      +.++ +++..+.+    |++++|+|+..
T Consensus       570 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~  597 (615)
T 1pgu_A          570 VKRPMKIIKALNAHKDGVNNLLWETPST  597 (615)
T ss_dssp             SSCTTCCEEETTSSTTCEEEEEEEETTE
T ss_pred             CCCCceechhhhcCccceEEEEEcCCCC
Confidence            9998 78888876    99999998754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9e-34  Score=303.28  Aligned_cols=290  Identities=10%  Similarity=0.030  Sum_probs=233.4

Q ss_pred             ccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342          309 LKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG  380 (701)
Q Consensus       309 i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  380 (701)
                      ..+|+..+.+....+.+|.+.|.  +++|+|+        +.|++|++||+.++.....+          .         
T Consensus        55 ~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------~---------  113 (383)
T 3ei3_B           55 PFIRSLKSYKLHRTASPFDRRVT--SLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI----------Q---------  113 (383)
T ss_dssp             HHHHHHTTCEEEEEECCCSSCEE--EEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE----------C---------
T ss_pred             cccccccccceEEeccCCCCCEE--EEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee----------e---------
Confidence            34677788899999999999999  9999998        68999999999988766551          1         


Q ss_pred             CCCCCCccccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342          381 DDSNDSSCFNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       381 D~~~~~~~l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s  458 (701)
                              +.+|.. |.+++|+| ++++|++++.|+.|++||+.    ......+. ....+...|.+++|+|+++++++
T Consensus       114 --------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~  180 (383)
T 3ei3_B          114 --------GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS----GSVIQVFA-KTDSWDYWYCCVDVSVSRQMLAT  180 (383)
T ss_dssp             --------CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT----SCEEEEEE-CCCCSSCCEEEEEEETTTTEEEE
T ss_pred             --------cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC----CCceEEEe-ccCCCCCCeEEEEECCCCCEEEE
Confidence                    126777 99999999 78999999999999999997    44333333 22345688999999999999999


Q ss_pred             EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EEEEEe-CCeEEEEeCCC
Q 005342          459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLET  534 (701)
Q Consensus       459 ~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l~s~s-dg~I~iwd~~~  534 (701)
                      |+.||.|++||+                     . +..+.. + ..|...|.+++|+  +. ++++++ |+.|++||+++
T Consensus       181 ~~~d~~i~i~d~---------------------~-~~~~~~-~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          181 GDSTGRLLLLGL---------------------D-GHEIFK-E-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             EETTSEEEEEET---------------------T-SCEEEE-E-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             ECCCCCEEEEEC---------------------C-CCEEEE-e-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            999999999965                     2 222211 2 3688999999999  66 899999 99999999987


Q ss_pred             ----CcEEEEecCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-----------------CCeEE
Q 005342          535 ----FQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----------------NRITC  591 (701)
Q Consensus       535 ----~~~~~~~~~~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----------------~~V~~  591 (701)
                          +..+..+ +|...|++++|+| ++ ++++++.|+.|++||+++++.+..+.+|.                 +.+..
T Consensus       237 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  315 (383)
T 3ei3_B          237 IKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV  315 (383)
T ss_dssp             CCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred             CCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceE
Confidence                6677777 5899999999999 99 99999999999999999988777776553                 23444


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCC-CCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342          592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT  667 (701)
Q Consensus       592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~-~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~  667 (701)
                      ++|+|++++  +|+.|+.|++||+.+++..     ..+..+ +.   ..+..++|+|++++|++|.|+.|+|||+++
T Consensus       316 ~~~s~dg~~--s~s~d~~i~iwd~~~~~~~-----~~l~~~~~~---~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          316 AGRYPDDQL--LLNDKRTIDIYDANSGGLV-----HQLRDPNAA---GIISLNKFSPTGDVLASGMGFNILIWNRED  382 (383)
T ss_dssp             EECBCCTTT--CTTCCCCEEEEETTTCCEE-----EEECBTTBC---SCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred             EEecCCccc--ccCCCCeEEEEecCCCcee-----eeecCCCCC---ceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence            666666665  6789999999999998643     223322 22   677788999999999998899999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.6e-34  Score=303.61  Aligned_cols=256  Identities=11%  Similarity=0.046  Sum_probs=205.9

Q ss_pred             CcccccccCccc----eeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcc
Q 005342          307 DKLKFPSMDKSR----LLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLD  376 (701)
Q Consensus       307 ~~i~iwd~~~~~----~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (701)
                      +.|++|+..++.    ......+|...|.  +++|+|+      +.|++|+|||+.+++.....                
T Consensus        70 ~~v~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~----------------  131 (357)
T 4g56_B           70 GSIWVFKDPEGAPNESLCTAGVQTEAGVT--DVAWVSEKGILVASDSGAVELWEILEKESLLVN----------------  131 (357)
T ss_dssp             EEEEEESSCC---CGGGCSEEEECSSCEE--EEEEETTTEEEEEETTSCEEEC--------CCC----------------
T ss_pred             CeEEEEECCCCCcceeEecccCCCCCCEE--EEEEcCCCCEEEEECCCEEEEeeccccceeEEE----------------
Confidence            567788876654    3345567888899  9999999      88999999999988766541                


Q ss_pred             cccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-
Q 005342          377 ASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-  454 (701)
Q Consensus       377 ~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-  454 (701)
                               .....+|.. |.+++|+|+|++|++|+.|+.|++||+.    ++++..   .+.+|...|.+++|+|++. 
T Consensus       132 ---------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~----~~~~~~---~~~~h~~~v~~v~~s~~~~~  195 (357)
T 4g56_B          132 ---------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS----QKAVLK---SYNAHSSEVNCVAACPGKDT  195 (357)
T ss_dssp             ---------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEECTTCSS
T ss_pred             ---------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC----CCcEEE---EEcCCCCCEEEEEEccCCCc
Confidence                     112347888 9999999999999999999999999998    565444   3356899999999999985 


Q ss_pred             EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEE
Q 005342          455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIF  530 (701)
Q Consensus       455 ~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iw  530 (701)
                      .+++++.||.|++||+.+                     ++.........+...+.+++|+   +.++++|+ |+.|++|
T Consensus       196 ~~~s~~~dg~v~~wd~~~---------------------~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w  254 (357)
T 4g56_B          196 IFLSCGEDGRILLWDTRK---------------------PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV  254 (357)
T ss_dssp             CEEEEETTSCEEECCTTS---------------------SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred             eeeeeccCCceEEEECCC---------------------CceeeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence            788999999999997643                     3322111113567789999998   56888888 9999999


Q ss_pred             eCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec-CCCEEEEEeCC
Q 005342          531 SLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD  607 (701)
Q Consensus       531 d~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D  607 (701)
                      |+++++.+..+.+|...|++++|+|++  +|++|+.|++|++||+++++.+..+ +|.+.|++++|+| ++.+|+|||.|
T Consensus       255 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~D  333 (357)
T 4g56_B          255 NIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWD  333 (357)
T ss_dssp             ESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             ECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCC
Confidence            999999999999999999999999998  7999999999999999999887765 7999999999999 89999999999


Q ss_pred             CeEEEEECCCC
Q 005342          608 AQLCVWDAVGW  618 (701)
Q Consensus       608 ~~I~vwd~~~g  618 (701)
                      ++|++||+.+.
T Consensus       334 g~v~iW~~~~~  344 (357)
T 4g56_B          334 HKVLHHHLPSE  344 (357)
T ss_dssp             SCEEEEECC--
T ss_pred             CeEEEEECCCC
Confidence            99999999773

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.7e-33  Score=287.80  Aligned_cols=263  Identities=11%  Similarity=0.109  Sum_probs=221.1

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +.+|.. |.+++|+|+|++|++|+.|+.|++|+..    .++...   ...+|...|.+++|+|++++|++|+.||.|++
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~----~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEK---TISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TCCEEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCC----Ccccch---hhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            678999 9999999999999999999999999997    554444   23468899999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      ||+                     .+++.+.. + .+|...|.+++|+  ++++++++ |+.|++||+++++.+..+..|
T Consensus        92 wd~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  148 (312)
T 4ery_A           92 WDV---------------------SSGKCLKT-L-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH  148 (312)
T ss_dssp             EET---------------------TTCCEEEE-E-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEC---------------------CCCcEEEE-E-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence            966                     44444432 2 4688999999999  88999999 999999999999999999999


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                      ..+|.+++|+|++ ++++|+.||.|++||+++++.+..+. .+...+..++|+|++++|++++.|+.|++||+.+++...
T Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  228 (312)
T 4ery_A          149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK  228 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            9999999999999 99999999999999999998887765 466789999999999999999999999999999975322


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV  687 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~  687 (701)
                        .   +. +|......+......+++.++++| .||.|++||+.+++.++.+.+    |.+++|+|...
T Consensus       229 --~---~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~  292 (312)
T 4ery_A          229 --T---YT-GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN  292 (312)
T ss_dssp             --E---EC-SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSS
T ss_pred             --E---EE-ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCC
Confidence              2   22 332111223333334678899986 899999999999999999987    89999988644

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=291.61  Aligned_cols=294  Identities=9%  Similarity=0.064  Sum_probs=241.9

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      .....+.+|.+.|.  +++|+|+       +.|+.|++||+.+++.+..+                             .
T Consensus        23 ~~~~~l~~h~~~v~--~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------------------------~   71 (369)
T 3zwl_B           23 MKAIKLTGHERPLT--QVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-----------------------------D   71 (369)
T ss_dssp             EEEEEEECCSSCEE--EEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-----------------------------C
T ss_pred             cccEEEEEeeceEE--EEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-----------------------------h
Confidence            34456899999999  9999999       78999999999988877662                             3


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-----Cc
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-----AT  464 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-----g~  464 (701)
                      +|.. |.+++|+|++++|++++.|+.|++||+.    .+++.....    +...|.+++|+|+++++++++.+     |.
T Consensus        72 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~  143 (369)
T 3zwl_B           72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS----NGQCVATWK----SPVPVKRVEFSPCGNYFLAILDNVMKNPGS  143 (369)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETT----TCCEEEEEE----CSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred             hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCcEEEEee----cCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence            6777 9999999999999999999999999998    555444221    67889999999999999999999     99


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCC--CeEEEEec--CCEEEEEe-CCeEEEEeCCC-CcEE
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD--SISCFALR--GSHLFSAS-GGKISIFSLET-FQTL  538 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~v~~l~~s--~~~l~s~s-dg~I~iwd~~~-~~~~  538 (701)
                      +.+||+.......     .  +.......-...     ..|..  .+.+++|+  ++++++++ ||.|++||+++ ++.+
T Consensus       144 i~~~d~~~~~~~~-----~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  211 (369)
T 3zwl_B          144 INIYEIERDSATH-----E--LTKVSEEPIHKI-----ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYV  211 (369)
T ss_dssp             EEEEEEEECTTTC-----C--EEEECSSCSEEE-----ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEE
T ss_pred             EEEEEecCCccce-----e--ecccccceeeec-----cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeE
Confidence            9999985543200     0  000000011111     13444  89999999  88999998 99999999998 7888


Q ss_pred             EEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---------
Q 005342          539 ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---------  608 (701)
Q Consensus       539 ~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---------  608 (701)
                      ..+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+. +...+.+++|+|+++++++++.++         
T Consensus       212 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  290 (369)
T 3zwl_B          212 DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSA  290 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC---------
T ss_pred             EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence            8999999999999999999 99999999999999999999998888 778899999999999999999988         


Q ss_pred             -----eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342          609 -----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       609 -----~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~  672 (701)
                           .+++||..+++..  ..+.    +|.   ..|++++|+|++++|+++ .||.|++|++.++....
T Consensus       291 ~~~~~~i~~~d~~~~~~~--~~~~----~~~---~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          291 NEGKFEARFYHKIFEEEI--GRVQ----GHF---GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             ----CEEEEEETTTCCEE--EEEE----CCS---SCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred             CCCcceeEEEecCCCcch--hhee----ccc---CcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence                 8999999997533  2222    555   899999999999999996 79999999998765443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=332.01  Aligned_cols=339  Identities=9%  Similarity=0.095  Sum_probs=246.8

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      +.|++||+.+++++..+. |.+.|.  +++|+|+       +.|++|++||+.++.+....         +....     
T Consensus        79 ~~v~lWd~~~~~~~~~~~-~~~~V~--~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~---------i~~~~-----  141 (902)
T 2oaj_A           79 DTVYVLSLYSQKVLTTVF-VPGKIT--SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK---------LDNLQ-----  141 (902)
T ss_dssp             CEEEEEETTTCSEEEEEE-CSSCEE--EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE---------ECCHH-----
T ss_pred             CeEEEEECCCCcEEEEEc-CCCCEE--EEEECCCCCEEEEEcCCCcEEEEECCCCccccce---------ecccc-----
Confidence            899999999999999886 667899  9999999       78999999999988764210         00000     


Q ss_pred             CCCCCCC-ccccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeE-eecC--------------CCCCC
Q 005342          380 GDDSNDS-SCFNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLP--------------DNSFG  441 (701)
Q Consensus       380 ~D~~~~~-~~l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~--------------~~~~~  441 (701)
                           .. ..+.+|.. |.+++|+|+ +..+++|+.|+.| +||+.    .+++.. +...              ...|.
T Consensus       142 -----~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~  211 (902)
T 2oaj_A          142 -----KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV----ENEIKQSFIYELPPFAPGGDFSEKTNEKRT  211 (902)
T ss_dssp             -----HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT----TTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred             -----ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC----CCceEEEEecccCCcCCCcccccccccccC
Confidence                 00 12357888 999999996 5789999999999 99997    454433 1110              01235


Q ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc--------c--------------------------------ccc
Q 005342          442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL--------E--------------------------------EEN  481 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~--------g--------------------------------~~~  481 (701)
                      ..|.+++|+|||++|++|+.||.|++||+.++....        +                                ...
T Consensus       212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll  291 (902)
T 2oaj_A          212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL  291 (902)
T ss_dssp             CCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEE
Confidence            789999999999999999999999999986543200        0                                000


Q ss_pred             cc---------eeeEEe---------------------------------------------------------------
Q 005342          482 VN---------MESQLY---------------------------------------------------------------  489 (701)
Q Consensus       482 ~~---------~~i~~~---------------------------------------------------------------  489 (701)
                      ..         ..+.+|                                                               
T Consensus       292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s  371 (902)
T 2oaj_A          292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL  371 (902)
T ss_dssp             EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred             EeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence            00         012222                                                               


Q ss_pred             --------eCCCCeEEeec-----ccCCCCCCeEEEE----------------------------------ec--CCEEE
Q 005342          490 --------QPSSKLVMTND-----IAADPKDSISCFA----------------------------------LR--GSHLF  520 (701)
Q Consensus       490 --------d~~~~~~~~~~-----~~~~~~~~v~~l~----------------------------------~s--~~~l~  520 (701)
                              +..+|......     ....|...|++++                                  |+  +++++
T Consensus       372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la  451 (902)
T 2oaj_A          372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI  451 (902)
T ss_dssp             TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE
T ss_pred             CCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE
Confidence                    22222111000     0001223444443                                  34  67899


Q ss_pred             EEe-CCeEEEEeCCCCcEE----EE--ec-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc----------
Q 005342          521 SAS-GGKISIFSLETFQTL----AT--FA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK----------  577 (701)
Q Consensus       521 s~s-dg~I~iwd~~~~~~~----~~--~~-----~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~----------  577 (701)
                      +|+ |++|++||+.++...    ..  +.     +|...|++++|+||| +||+|+.||+|++||+.+++          
T Consensus       452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~  531 (902)
T 2oaj_A          452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPES  531 (902)
T ss_dssp             EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------
T ss_pred             EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCC
Confidence            999 999999999877421    11  11     788899999999999 99999999999999997662          


Q ss_pred             -----------------------------------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          578 -----------------------------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       578 -----------------------------------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                                                         ++..+.+|.+.|++++||||| +||+|+.|++|++||++++..+.
T Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~  610 (902)
T 2oaj_A          532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIY  610 (902)
T ss_dssp             ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred             cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEE
Confidence                                               367788999999999999999 99999999999999998875433


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEc-----CCC---CEEEEE-ecCeEEEEEC---CCCceeeeeee
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFH-----PDQ---IHLLSI-HEGQIDVYEA---PTLNHTSQVLL  676 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~s-----pdg---~~l~sg-~Dg~I~iwd~---~~g~~~~~l~~  676 (701)
                      ...+..+..+|.   ..|++++|+     |||   ++|++| .|++|++||+   .+|+...++.+
T Consensus       611 ~~~~~~~~~gh~---~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~  673 (902)
T 2oaj_A          611 MENIREISGAQS---ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMD  673 (902)
T ss_dssp             EEEGGGTCSSCC---CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEE
T ss_pred             EeehhHhccccc---cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecC
Confidence            222221222555   899999999     886   789986 7999999999   88998888766

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=313.26  Aligned_cols=304  Identities=10%  Similarity=0.085  Sum_probs=240.8

Q ss_pred             CcccccccCccc---eeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCC----ccccccccccCCCCCCCC
Q 005342          307 DKLKFPSMDKSR---LLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTV----SNLRYASSILTDKPNQEG  372 (701)
Q Consensus       307 ~~i~iwd~~~~~---~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~----~~~~~~~~~~~~~~~~~~  372 (701)
                      +.|++||+.++.   .+..+ .|...|.  +++|+|+       +.|+.|++||+.+.    .....             
T Consensus        45 ~~v~iw~~~~~~~~~~~~~~-~~~~~v~--~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~-------------  108 (416)
T 2pm9_A           45 SSLELWSLLAADSEKPIASL-QVDSKFN--DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMAR-------------  108 (416)
T ss_dssp             CCCEEEESSSGGGCSCSCCC-CCSSCEE--EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEE-------------
T ss_pred             CeEEEEEccCCCCCcEEEEE-ecCCceE--EEEECCCCCeEEEEccCCeEEEeecccccccccchhh-------------
Confidence            789999999886   44444 5788899  9999999       68999999999872    22222             


Q ss_pred             CCcccccCCCCCCCccccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCC---ceeEeecCCCCCCCCEEEE
Q 005342          373 RPLDASSGDDSNDSSCFNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRL  447 (701)
Q Consensus       373 ~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~---~~~~l~~~~~~~~~~v~~l  447 (701)
                                      +.+|.. |.+++|+|+ +++|++|+.|+.|++||+.......   ....+ .....|...|.++
T Consensus       109 ----------------~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  171 (416)
T 2pm9_A          109 ----------------FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP-GQSMSSVDEVISL  171 (416)
T ss_dssp             ----------------CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC-CCSCCSSCCCCEE
T ss_pred             ----------------ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc-ccccCCCCCeeEE
Confidence                            356777 999999998 8999999999999999998422100   11111 1224588899999


Q ss_pred             EEecC-CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc-----CCCCCCeEEEEec--C-CE
Q 005342          448 IYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA-----ADPKDSISCFALR--G-SH  518 (701)
Q Consensus       448 ~~spd-g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~v~~l~~s--~-~~  518 (701)
                      +|+|+ +..+++++.||.|++||+                     .+++.+.. +.     .+|...|.+++|+  + .+
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~---------------------~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDL---------------------KAKKEVIH-LSYTSPNSGIKQQLSVVEWHPKNSTR  229 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEET---------------------TTTEEEEE-ECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEEC---------------------CCCCcceE-EeccccccccCCceEEEEECCCCCCE
Confidence            99999 789999999999999976                     33443322 11     1237889999999  4 58


Q ss_pred             EEEEe-CC---eEEEEeCCCC-cEEEEec-CCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeE
Q 005342          519 LFSAS-GG---KISIFSLETF-QTLATFA-NPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT  590 (701)
Q Consensus       519 l~s~s-dg---~I~iwd~~~~-~~~~~~~-~~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~  590 (701)
                      +++++ |+   .|++||++++ ..+..+. +|...|++++|+| ++ ++++++.||.|++||+++++.+..+.+|...|+
T Consensus       230 l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~  309 (416)
T 2pm9_A          230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCF  309 (416)
T ss_dssp             EEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCC
T ss_pred             EEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceE
Confidence            88888 77   9999999986 5777777 8999999999999 78 999999999999999999999999999999999


Q ss_pred             EEEEecCC-CEEEEEeCCCeEEEEECCCCeeeeeeee------------e-----------------eccCCCCCCCCCe
Q 005342          591 CLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFL------------H-----------------SFQTGLVPETTIV  640 (701)
Q Consensus       591 ~v~~spdg-~~l~s~s~D~~I~vwd~~~g~~~~~~~l------------~-----------------~~~~~~~~~~~~v  640 (701)
                      +++|+|++ .+|++++.|+.|++||+.++.......-            .                 ..+..+.   .++
T Consensus       310 ~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  386 (416)
T 2pm9_A          310 KTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG---EPS  386 (416)
T ss_dssp             CEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC---CCS
T ss_pred             EEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc---CCc
Confidence            99999998 8999999999999999988642211000            0                 0001122   678


Q ss_pred             EEEEEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342          641 NHIQFHPDQIHLLSI-HEGQIDVYEAPTL  668 (701)
Q Consensus       641 ~~v~~spdg~~l~sg-~Dg~I~iwd~~~g  668 (701)
                      ++++|+|||++|+++ .|++|+||++.+.
T Consensus       387 ~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          387 PAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             cceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence            899999999999997 7999999999765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-32  Score=283.29  Aligned_cols=283  Identities=12%  Similarity=0.087  Sum_probs=233.8

Q ss_pred             cceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342          317 SRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF  389 (701)
Q Consensus       317 ~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l  389 (701)
                      .++.+.+.+|.+.|.  +++| |+       +.|+.|++||+.++.....                             +
T Consensus         8 ~~~~~~l~~h~~~v~--~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~-----------------------------~   55 (313)
T 3odt_A            8 YQLSATLKGHDQDVR--DVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTV-----------------------------V   55 (313)
T ss_dssp             CEEEEEECCCSSCEE--EEEE-EETTEEEEEETTSEEEEEEESSSEEEEE-----------------------------E
T ss_pred             HHHHHHhhCCCCCcE--EEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEE-----------------------------e
Confidence            377889999999999  9999 66       8999999999988766555                             2


Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      ..|.. |.+++|+|+++++++|+.|+.+++|++.+.........    ...|...|.++.|  +++++++++.||.+++|
T Consensus        56 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~  129 (313)
T 3odt_A           56 YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYT----LIGHQGNVCSLSF--QDGVVISGSWDKTAKVW  129 (313)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CE----ECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccc----hhhcccCEEEEEe--cCCEEEEEeCCCCEEEE
Confidence            35666 99999999999999999999999999975332222222    2358899999999  57899999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecC-
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFAN-  543 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~-  543 (701)
                      |.                       +..... + ..|...+.++++.   ++++++++ ||.|++||  .++....+.. 
T Consensus       130 d~-----------------------~~~~~~-~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~  182 (313)
T 3odt_A          130 KE-----------------------GSLVYN-L-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGI  182 (313)
T ss_dssp             ET-----------------------TEEEEE-E-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSS
T ss_pred             cC-----------------------CcEEEe-c-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEecc
Confidence            51                       222211 2 3688899999987   88999999 99999999  4566677776 


Q ss_pred             CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342          544 PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       544 ~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                      +...+.+++|+|++.+++|+.||.|++||+++++.+..+.+|.+.|++++|+|++ .+++++.||.|++||+.+++... 
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~-  260 (313)
T 3odt_A          183 HNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ-  260 (313)
T ss_dssp             CSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEE-
T ss_pred             CcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeE-
Confidence            8899999999999988899999999999999999999999999999999999999 58899999999999999975332 


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeee
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l  674 (701)
                       .+.    .|.   ..|++++|+|++++++++.||.|++||+.+++.....
T Consensus       261 -~~~----~~~---~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          261 -VIT----LPA---ISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             -EEE----CSS---SCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC--
T ss_pred             -EEe----ccC---ceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehh
Confidence             222    444   7899999999999766679999999999988765543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.7e-34  Score=309.64  Aligned_cols=288  Identities=14%  Similarity=0.088  Sum_probs=223.9

Q ss_pred             ceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF  389 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l  389 (701)
                      +.......|...|+  |++|+|.        +.||+|+|||+.++.....+                           .+
T Consensus       110 ~~~~~~~~~~~~V~--~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~---------------------------~~  160 (435)
T 4e54_B          110 RILQKAAPFDRRAT--SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI---------------------------KG  160 (435)
T ss_dssp             TSCCEEEECSSCEE--EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE---------------------------CC
T ss_pred             eecccCCCCCCCEE--EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE---------------------------Ec
Confidence            44556788999999  9999995        78999999999887654441                           12


Q ss_pred             cCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          390 NDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       390 ~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      .+|.. |++++|+| ++.+|++|+.||+|++||+.    ++.+..+. ....+...+.+++|+|++++|++|+.||.|++
T Consensus       161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~  235 (435)
T 4e54_B          161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK----GNILRVFA-SSDTINIWFCSLDVSASSRMVVTGDNVGNVIL  235 (435)
T ss_dssp             CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT----SCEEEEEE-CCSSCSCCCCCEEEETTTTEEEEECSSSBEEE
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc----CCceeEEe-ccCCCCccEEEEEECCCCCEEEEEeCCCcEee
Confidence            47888 99999998 78999999999999999996    44433322 22334566889999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C-CEEEEEe-CCeEEEEeCCCCcEEEE---
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLAT---  540 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~-~~l~s~s-dg~I~iwd~~~~~~~~~---  540 (701)
                      ||+++                     ..+..  + .+|...|.+++|+  + .++++++ |+.|++||+++++....   
T Consensus       236 wd~~~---------------------~~~~~--~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~  291 (435)
T 4e54_B          236 LNMDG---------------------KELWN--L-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY  291 (435)
T ss_dssp             EESSS---------------------CBCCC--S-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB
T ss_pred             eccCc---------------------ceeEE--E-ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE
Confidence            97632                     22221  2 4789999999998  4 4788888 99999999988764433   


Q ss_pred             ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC------CeEEEEEecCCCEEEEEe--------
Q 005342          541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN------RITCLAYSLSLNVLVSSG--------  605 (701)
Q Consensus       541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~------~V~~v~~spdg~~l~s~s--------  605 (701)
                      ..+|...|++++|+|+| +|++|+.||.|++||+.++.....+.+|..      .+....|+|++.++++++        
T Consensus       292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  371 (435)
T 4e54_B          292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKS  371 (435)
T ss_dssp             CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCC
T ss_pred             eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEE
Confidence            35688999999999999 999999999999999999988877766643      234567888887777664        


Q ss_pred             ----CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEE-EEcCCCCEEEEEecCeEEEEECCCCcee
Q 005342          606 ----ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI-QFHPDQIHLLSIHEGQIDVYEAPTLNHT  671 (701)
Q Consensus       606 ----~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v-~~spdg~~l~sg~Dg~I~iwd~~~g~~~  671 (701)
                          .++.|++||..+|+...     .+..+|.   ..|.++ +|+|+|++|++|.|++|+|||+++|+..
T Consensus       372 ~~~~~~~~i~iwd~~~g~~~~-----~l~~~~~---~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          372 CTPYELRTIDVFDGNSGKMMC-----QLYDPES---SGISSLNEFNPMGDTLASAMGYHILIWSQQEARTR  434 (435)
T ss_dssp             SSTTCCCCEEEECSSSCCEEE-----EECCSSC---CCCCCEEEECTTSSCEEEECSSEEEECCCC-----
T ss_pred             EEecCCCEEEEEECCCCcEEE-----EEeCCCC---CcEEEEEEECCCCCEEEEEcCCcEEEEECCcCeee
Confidence                34679999999986332     2344555   778887 6999999999998999999999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.1e-33  Score=295.06  Aligned_cols=291  Identities=11%  Similarity=0.038  Sum_probs=225.8

Q ss_pred             eEEEeecCcceeeeEEEEccC--------CC---CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc
Q 005342          320 LSLIKQIMDWWVPYCINVMPN--------AN---NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC  388 (701)
Q Consensus       320 ~~~l~~h~~~v~~~~l~fspd--------s~---d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~  388 (701)
                      .+.+.+|.+.|.  +++|+|+        +.   |++|++||+.+++.....                            
T Consensus        11 ~~~~~~h~~~v~--~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~----------------------------   60 (357)
T 3i2n_A           11 AHIQKGFNYTVF--DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR----------------------------   60 (357)
T ss_dssp             EEEEEECSSCEE--EEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE----------------------------
T ss_pred             hhhccCCCCceE--EEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee----------------------------
Confidence            345688999999  9999997        33   999999999988765441                            


Q ss_pred             ccCCCc-eEEEEEcCC---CCeEEEEcCCCcEEEEeccccCCCCc-eeEeecCCCCCCCCEEEEEE------ecCCCEEE
Q 005342          389 FNDNNQ-SRESTSLPD---ADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIY------SHSGDFLV  457 (701)
Q Consensus       389 l~~h~~-V~~l~~spd---g~~l~s~s~d~~v~iw~~~~~~~~~~-~~~l~~~~~~~~~~v~~l~~------spdg~~l~  457 (701)
                      ..+|.. |.+++|+|+   |++|++|+.||.|++|++.    .++ ...   ...+|...|.++.|      +|++++|+
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~~l~  133 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE----APEMPVY---SVKGHKEIINAIDGIGGLGIGEGAPEIV  133 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT----SCSSCSE---EECCCSSCEEEEEEESGGGCC-CCCEEE
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC----CCCccEE---EEEecccceEEEeeccccccCCCccEEE
Confidence            125666 999999999   7999999999999999998    333 222   22358899999955      68999999


Q ss_pred             EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEE----ec--CCEEEEEe-CCeEEEE
Q 005342          458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA----LR--GSHLFSAS-GGKISIF  530 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~----~s--~~~l~s~s-dg~I~iw  530 (701)
                      +++.||.|++||+.....                 .-..+. .....+...+.+++    |+  ++++++++ ||.|++|
T Consensus       134 ~~~~d~~i~vwd~~~~~~-----------------~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~  195 (357)
T 3i2n_A          134 TGSRDGTVKVWDPRQKDD-----------------PVANME-PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF  195 (357)
T ss_dssp             EEETTSCEEEECTTSCSS-----------------CSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred             EEeCCCeEEEEeCCCCCC-----------------cceecc-ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence            999999999997744310                 000110 01112244888888    55  88999999 8999999


Q ss_pred             eCCCCcEEEEecCCCCCeEEEEEcC---CC-eEEEEeCCCcEEEEeCCCCceEEeec-----CCCCCeEEEEEecCCC-E
Q 005342          531 SLETFQTLATFANPPPIATYFILLP---QD-LFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNRITCLAYSLSLN-V  600 (701)
Q Consensus       531 d~~~~~~~~~~~~~~~~i~~l~~sp---dg-~l~~gs~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~v~~spdg~-~  600 (701)
                      |+++++.... ..|...|.+++|+|   ++ .+++|+.||.|++||+++++.+..+.     +|...|++++|+|+++ +
T Consensus       196 d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  274 (357)
T 3i2n_A          196 DLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL  274 (357)
T ss_dssp             ETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             ECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence            9999887655 44888999999999   88 99999999999999998876655554     8999999999999998 8


Q ss_pred             EEEEeCCCeEEEEECCCCeeee--------------eeeeeeccCCCCCCCCCeEEEEEcCCCCEEE-EE-ecCeEEEEE
Q 005342          601 LVSSGADAQLCVWDAVGWKKLC--------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SI-HEGQIDVYE  664 (701)
Q Consensus       601 l~s~s~D~~I~vwd~~~g~~~~--------------~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~-sg-~Dg~I~iwd  664 (701)
                      +++++.||.|++||+..+....              ...+..+. +|.   ..|++++|+|++++|+ ++ .|+.|++||
T Consensus       275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~---~~v~~~~~s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT-LST---QPISSLDWSPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE-CCS---SCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             EEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc-cCC---CCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence            9999999999999998754221              12333233 454   8999999999999988 55 799999999


Q ss_pred             CCCCce
Q 005342          665 APTLNH  670 (701)
Q Consensus       665 ~~~g~~  670 (701)
                      +.+++.
T Consensus       351 ~~~~~~  356 (357)
T 3i2n_A          351 VTKLNK  356 (357)
T ss_dssp             ECC---
T ss_pred             CCCccc
Confidence            987764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.1e-32  Score=288.31  Aligned_cols=266  Identities=14%  Similarity=0.162  Sum_probs=212.1

Q ss_pred             cccCCCc-eEEEEE-----cC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342          388 CFNDNNQ-SRESTS-----LP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT  460 (701)
Q Consensus       388 ~l~~h~~-V~~l~~-----sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s  460 (701)
                      .|.+|.. |++++|     +| ++++|++|+.|++|++|++......+..........+|...|.+++|+|++.++++|+
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s   95 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS   95 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence            3779999 999999     77 9999999999999999999742211111111113357899999999999999999999


Q ss_pred             CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE
Q 005342          461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT  537 (701)
Q Consensus       461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~  537 (701)
                      .|++|++||+                     .+++.+.. + .+|...|.+++|+  ++++++++ |+.|++||+.. ..
T Consensus        96 ~D~~v~lwd~---------------------~~~~~~~~-~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~  151 (343)
T 2xzm_R           96 WDKTLRLWDL---------------------RTGTTYKR-F-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-EC  151 (343)
T ss_dssp             TTSEEEEEET---------------------TSSCEEEE-E-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CE
T ss_pred             CCCcEEEEEC---------------------CCCcEEEE-E-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cc
Confidence            9999999965                     44554432 2 4799999999999  88999999 99999999974 33


Q ss_pred             EEEec---CCCCCeEEEEEcCCC-----------eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342          538 LATFA---NPPPIATYFILLPQD-----------LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       538 ~~~~~---~~~~~i~~l~~spdg-----------~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s  603 (701)
                      .....   +|...|.+++|+|++           ++++|+.||.|++|| .+++....+.+|...|++++|+|+|++|++
T Consensus       152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  230 (343)
T 2xzm_R          152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIAT  230 (343)
T ss_dssp             EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEE
Confidence            33333   678889999999873           699999999999999 456777888999999999999999999999


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceee--eee------
Q 005342          604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS--QVL------  675 (701)
Q Consensus       604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~--~l~------  675 (701)
                      |+.|++|++||+.....    ....+. ..    ..|++++|+|+++++++|.|+.|++||+.+++...  .+.      
T Consensus       231 gs~dg~v~iwd~~~~~~----~~~~~~-~~----~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~  301 (343)
T 2xzm_R          231 GGKDKKLLIWDILNLTY----PQREFD-AG----STINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITK  301 (343)
T ss_dssp             EETTCEEEEEESSCCSS----CSEEEE-CS----SCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred             EcCCCeEEEEECCCCcc----cceeec-CC----CcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence            99999999999954321    111111 11    66999999999999988899999999998876544  332      


Q ss_pred             -----e----eeEEEEEeeEE
Q 005342          676 -----L----ISHIMFVQIVV  687 (701)
Q Consensus       676 -----~----i~~~~fs~~~~  687 (701)
                           +    |++++|+|+..
T Consensus       302 ~~~~~~~~~~v~~~~~sp~g~  322 (343)
T 2xzm_R          302 AEGQKGKNPQCTSLAWNALGK  322 (343)
T ss_dssp             BTTBCCSCCCEEEEEECSSSC
T ss_pred             hhhhcCCCCceEEEEECCCCC
Confidence                 2    88999998643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-32  Score=294.86  Aligned_cols=262  Identities=15%  Similarity=0.151  Sum_probs=213.0

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCC--------------CCCCCCEEEEEEecCCC
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPD--------------NSFGGRVVRLIYSHSGD  454 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~--------------~~~~~~v~~l~~spdg~  454 (701)
                      +|.. |.+++|+|||++||+|+ ++.+++|++.    .+.... +....              ..+...|.+++|+|||+
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~----~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVS----DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETT----TCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEec----CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence            5777 99999999999999987 5899999997    444322 11000              01223599999999999


Q ss_pred             EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEe
Q 005342          455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS  531 (701)
Q Consensus       455 ~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd  531 (701)
                      +|++|+.||.|++||+                     .+++.... + .+|...|.+++|+  +++|++++ |+.|++||
T Consensus       137 ~l~s~~~d~~i~iwd~---------------------~~~~~~~~-~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd  193 (393)
T 1erj_A          137 FLATGAEDRLIRIWDI---------------------ENRKIVMI-L-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD  193 (393)
T ss_dssp             EEEEEETTSCEEEEET---------------------TTTEEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCeEEEEEC---------------------CCCcEEEE-E-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence            9999999999999965                     55554432 2 5799999999999  88999999 99999999


Q ss_pred             CCCCcEEEEecCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEee-------cCCCCCeEEEEEecCCCEEE
Q 005342          532 LETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSLNVLV  602 (701)
Q Consensus       532 ~~~~~~~~~~~~~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~~~~~l-------~~h~~~V~~v~~spdg~~l~  602 (701)
                      +++++....+. +...+.+++++| ++ ++++|+.||.|++||+++++.+..+       .+|...|.+++|+|+|++|+
T Consensus       194 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~  272 (393)
T 1erj_A          194 LRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  272 (393)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             CCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence            99999888876 567899999999 77 9999999999999999999888776       57999999999999999999


Q ss_pred             EEeCCCeEEEEECCCCeeee-------eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeee
Q 005342          603 SSGADAQLCVWDAVGWKKLC-------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       603 s~s~D~~I~vwd~~~g~~~~-------~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l  674 (701)
                      +|+.|++|++||+.++....       ......+ .+|.   ..|.+++|+|++++|++| .|+.|++||+.+++.+..+
T Consensus       273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l  348 (393)
T 1erj_A          273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-IGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  348 (393)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEE-ECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEeCCCEEEEEECCCCCCcccccCCCCCcceEEE-eccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Confidence            99999999999998743211       0111112 2555   889999999999999996 7999999999999999998


Q ss_pred             ee----eeEEEEEee
Q 005342          675 LL----ISHIMFVQI  685 (701)
Q Consensus       675 ~~----i~~~~fs~~  685 (701)
                      .+    |.+++|++.
T Consensus       349 ~~h~~~v~~v~~~~~  363 (393)
T 1erj_A          349 QGHRNSVISVAVANG  363 (393)
T ss_dssp             ECCSSCEEEEEECSS
T ss_pred             CCCCCCEEEEEecCC
Confidence            87    999999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1e-33  Score=299.67  Aligned_cols=285  Identities=12%  Similarity=0.153  Sum_probs=230.1

Q ss_pred             EEeecCcceeeeEEEEccC-----------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          322 LIKQIMDWWVPYCINVMPN-----------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       322 ~l~~h~~~v~~~~l~fspd-----------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      ...+|.+.|.  +++|+|+           +.++.|++||+.++..+..          +..+..              .
T Consensus        13 ~~~~h~~~v~--~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~----------~~~~~~--------------~   66 (366)
T 3k26_A           13 LKEDHNQPLF--GVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL----------LQSYVD--------------A   66 (366)
T ss_dssp             EECTTCSCEE--EEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE----------EEEEEC--------------S
T ss_pred             eecCCCCceE--EEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe----------eeeccc--------------c
Confidence            4458999999  9999982           5677999999998887666          222211              2


Q ss_pred             CCCc-eEEEEEcCC----CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCc
Q 005342          391 DNNQ-SRESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTAT  464 (701)
Q Consensus       391 ~h~~-V~~l~~spd----g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~  464 (701)
                      .|.. |.+++|+|+    |++|++|+.||.|++||+.    .++...   ...+|...|.+++|+| ++.++++++.||.
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~----~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~  139 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI----TMQCIK---HYVGHGNAINELKFHPRDPNLLLSVSKDHA  139 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT----TCCEEE---EEESCCSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch----hceEee---eecCCCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            3666 999999999    6799999999999999997    454433   2235889999999999 9999999999999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc--CCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA  539 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~  539 (701)
                      |++||+                     .+++.+.. +.  .+|...|.+++|+  ++++++++ ||.|++||+++++...
T Consensus       140 i~iwd~---------------------~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  197 (366)
T 3k26_A          140 LRLWNI---------------------QTDTLVAI-FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN  197 (366)
T ss_dssp             EEEEET---------------------TTTEEEEE-ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHH
T ss_pred             EEEEEe---------------------ecCeEEEE-ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccc
Confidence            999966                     44443322 21  3688999999999  88999999 9999999998876544


Q ss_pred             Eec----------------------------CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce------------
Q 005342          540 TFA----------------------------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT------------  578 (701)
Q Consensus       540 ~~~----------------------------~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~------------  578 (701)
                      .+.                            +|...|.+++|+  + ++++++.||.|++||+.++..            
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  275 (366)
T 3k26_A          198 AIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNV  275 (366)
T ss_dssp             HHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCE
T ss_pred             ccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcch
Confidence            333                            388899999999  6 999999999999999987643            


Q ss_pred             --EEeecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCC-CCCCCCCeEEEEEcCCCCEEE
Q 005342          579 --KAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLL  653 (701)
Q Consensus       579 --~~~l~~h~~~V~~v~~spd--g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~-~~~~~~~v~~v~~spdg~~l~  653 (701)
                        +..+.+|...|++++|+|+  +++|++|+.||.|++||+.+++..... ...+..+ |.   ..|++++|+|++++|+
T Consensus       276 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~---~~v~~~~~s~~~~~l~  351 (366)
T 3k26_A          276 TILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK-CTTLTHHKCG---AAIRQTSFSRDSSILI  351 (366)
T ss_dssp             EEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE-EEEECCTTCC---SCEEEEEECTTSSEEE
T ss_pred             heeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc-ceEEcccccC---CceEEEEeCCCCCeEE
Confidence              7788899999999999999  999999999999999999997543211 1213322 13   8999999999999999


Q ss_pred             EE-ecCeEEEEECCC
Q 005342          654 SI-HEGQIDVYEAPT  667 (701)
Q Consensus       654 sg-~Dg~I~iwd~~~  667 (701)
                      ++ .||.|++||+.+
T Consensus       352 s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          352 AVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEETTSEEEEEEC--
T ss_pred             EEeCCCEEEEEEecC
Confidence            96 899999999853

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.4e-33  Score=285.66  Aligned_cols=247  Identities=14%  Similarity=0.163  Sum_probs=199.1

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i  465 (701)
                      +.+|.. |++++|+|+|++||+|+.|++|++|++...  ..++..   .+.+|.+.|.+++|+|+  |++|++|+.||+|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--~~~~~~---~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--THKLID---TLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS--CBCCCE---EECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC--CcEEEE---EEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            568988 999999999999999999999999999621  112222   33479999999999864  8999999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCc--EE
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQ--TL  538 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~--~~  538 (701)
                      ++||+.++.                   ...+.. + .+|...|.+++|+    |.+|++++ |+.|++||++++.  ..
T Consensus        80 ~iWd~~~~~-------------------~~~~~~-~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~  138 (297)
T 2pm7_B           80 MIWKEENGR-------------------WSQIAV-H-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP  138 (297)
T ss_dssp             EEEEBSSSC-------------------BCCCEE-E-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred             EEEEcCCCc-------------------eEEEEE-e-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee
Confidence            999774321                   011111 2 4688899999998    57899999 9999999998763  24


Q ss_pred             EEecCCCCCeEEEEEcCC-------------C-eEEEEeCCCcEEEEeCCCCc----eEEeecCCCCCeEEEEEecCC--
Q 005342          539 ATFANPPPIATYFILLPQ-------------D-LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSL--  598 (701)
Q Consensus       539 ~~~~~~~~~i~~l~~spd-------------g-~l~~gs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~v~~spdg--  598 (701)
                      ..+.+|...|.+++|+|+             + +|++|+.|++|++||+++++    ....+.+|...|.+++|+|++  
T Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~  218 (297)
T 2pm7_B          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  218 (297)
T ss_dssp             EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence            567789999999999996             6 89999999999999998765    667889999999999999985  


Q ss_pred             -CEEEEEeCCCeEEEEECCCCeeee-eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          599 -NVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       599 -~~l~s~s~D~~I~vwd~~~g~~~~-~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                       ++||+++.|++|++||+.++.... ...+.  ..+|.   ..|.+++|+|+|++|+++ .|++|+||+..
T Consensus       219 ~~~las~s~D~~v~iWd~~~~~~~~~~~~~~--~~~~~---~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          219 RSYMASVSQDRTCIIWTQDNEQGPWKKTLLK--EEKFP---DVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SEEEEEEETTSCEEEEEESSTTSCCEEEESS--SSCCS---SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ceEEEEEECCCcEEEEEeCCCCCccceeeee--cccCC---CcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence             799999999999999998742111 11111  12444   889999999999999985 89999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.3e-32  Score=285.71  Aligned_cols=262  Identities=11%  Similarity=0.040  Sum_probs=220.2

Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      .+|.. |.+++|+|+++++++++ ||.|++|++...........+  ....|...|.+++|+|+++++++++.||.|++|
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL--DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE--ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc--cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            47888 99999999999999999 999999999743222222221  223578999999999999999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP  545 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~  545 (701)
                      |+...                   ....... + ..|...|.+++|+  ++++++++ ||.|++||+++++.+..+.+|.
T Consensus       125 d~~~~-------------------~~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~  183 (337)
T 1gxr_A          125 DLAAP-------------------TPRIKAE-L-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT  183 (337)
T ss_dssp             ECCCC---------------------EEEEE-E-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             ECCCC-------------------Ccceeee-c-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc
Confidence            76332                   1112211 2 3678899999999  88999998 9999999999999999999999


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      ..+.+++|+|++ .+++++.||.|++||+++++.+..+. |...+.+++|+|+++++++++.|+.|++||+.+++..   
T Consensus       184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~---  259 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY---  259 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE---
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE---
Confidence            999999999999 99999999999999999999888775 7788999999999999999999999999999987532   


Q ss_pred             eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEEEeeE
Q 005342          625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQIV  686 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~~  686 (701)
                      .   +. .|.   ..|.+++|+|++++++++ .||.|++||+.+++.+.....   |++++|+|+.
T Consensus       260 ~---~~-~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  318 (337)
T 1gxr_A          260 Q---LH-LHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD  318 (337)
T ss_dssp             E---EC-CCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTS
T ss_pred             E---Ec-CCc---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCC
Confidence            2   22 444   889999999999999996 799999999999998866554   9999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-32  Score=295.73  Aligned_cols=285  Identities=14%  Similarity=0.085  Sum_probs=231.5

Q ss_pred             eecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEE
Q 005342          324 KQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRE  397 (701)
Q Consensus       324 ~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~  397 (701)
                      .+|.+.+...++.|+++     +.|+.|++||+.++.....+          .                  ..|.. |.+
T Consensus        88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~----------~------------------~~~~~~v~~  139 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALA----------E------------------TDESTYVAS  139 (401)
T ss_dssp             TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEE----------E------------------CCTTCCEEE
T ss_pred             CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEee----------e------------------cCCCCCEEE
Confidence            46666666557888888     88999999999998876652          1                  13666 999


Q ss_pred             EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342          398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  477 (701)
Q Consensus       398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  477 (701)
                      ++|+|+|++|++|+.||.|++||+.    .++...   ...+|...|.+++|  +++.+++|+.||.|++||+..     
T Consensus       140 v~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~---~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~-----  205 (401)
T 4aez_A          140 VKWSHDGSFLSVGLGNGLVDIYDVE----SQTKLR---TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRI-----  205 (401)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT----TCCEEE---EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS-----
T ss_pred             EEECCCCCEEEEECCCCeEEEEECc----CCeEEE---EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEeccc-----
Confidence            9999999999999999999999997    454433   22368899999999  467999999999999997732     


Q ss_pred             cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEc
Q 005342          478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL  554 (701)
Q Consensus       478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s  554 (701)
                                     .+..... + .+|...|.+++|+  +.++++++ ||.|++||+++++.+..+.+|...|.+++|+
T Consensus       206 ---------------~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~  268 (401)
T 4aez_A          206 ---------------ANHQIGT-L-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC  268 (401)
T ss_dssp             ---------------SSCEEEE-E-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEEC
T ss_pred             ---------------CcceeeE-E-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEEC
Confidence                           1122211 2 3688999999999  88999999 9999999999999999999999999999999


Q ss_pred             CCC--eEEEEe--CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeeeeeeeeee
Q 005342          555 PQD--LFAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       555 pdg--~l~~gs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s--~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      |++  ++++|+  .|+.|++||+.+++.+..+. |...|.+++|+|+++++++++  .||.|++||+.++.......+. 
T Consensus       269 p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-  346 (401)
T 4aez_A          269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-  346 (401)
T ss_dssp             TTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-
T ss_pred             CCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-
Confidence            988  777765  79999999999999998887 667899999999999999854  8999999999997644433333 


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                         +|.   ..|.+++|+|+|++|+++ .||.|++||+.+++.+....
T Consensus       347 ---~h~---~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          347 ---AHD---TRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             ---CCS---SCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             ---CCC---CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence               555   899999999999999996 79999999999998776543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-32  Score=286.00  Aligned_cols=270  Identities=13%  Similarity=0.149  Sum_probs=207.0

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-cCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      +.+|.. |++++|+|+  +|++|+.|++|++|++.    .+....+. +...+|...|.+++|+|++++|++|+.|+.|+
T Consensus        10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~----~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVK----YDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EECCSSCEEEEEEETT--EEEEEESSSCEEEEECS----SSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eccCCCceeeeccCCC--EEEEEcCCCEEEEEEec----CCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            678999 999999998  99999999999999997    33211111 22234889999999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC----CcEEE
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLA  539 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~----~~~~~  539 (701)
                      +||+.....              .......... + .+|...|.+++|+  |++|++|+ |+.|++||+..    .+.+.
T Consensus        84 iw~~~~~~~--------------~~~~~~~~~~-~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~  147 (330)
T 2hes_X           84 IWAKEESAD--------------RTFEMDLLAI-I-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS  147 (330)
T ss_dssp             EEEC---------------------CCCEEEEE-E-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred             EEEcccCcC--------------ccccceeEEE-E-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence            998743210              0012222221 2 4799999999999  88999999 99999999943    24677


Q ss_pred             EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--ceEEeecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEE
Q 005342          540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWD  614 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~v~~spd--g~~l~s~s~D~~I~vwd  614 (701)
                      .+.+|...|.+++|+|++ +|++|+.|++|++||..++  +.+..+.+|.+.|.+++|+|+  +.+|++|+.|++|++||
T Consensus       148 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~  227 (330)
T 2hes_X          148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK  227 (330)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEE
T ss_pred             EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEE
Confidence            888999999999999999 9999999999999998776  678889999999999999998  77999999999999999


Q ss_pred             CCCCee---eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCc--eeeee-ee-----eeEEEE
Q 005342          615 AVGWKK---LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQV-LL-----ISHIMF  682 (701)
Q Consensus       615 ~~~g~~---~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~--~~~~l-~~-----i~~~~f  682 (701)
                      +.++..   ........+...|.   ..|++++|+|++ +|++ |.||+|+|||..+++  .+... .+     |+.++|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~  303 (330)
T 2hes_X          228 YMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKW  303 (330)
T ss_dssp             EEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEE
T ss_pred             ecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEE
Confidence            876421   00122232334465   899999999876 5566 589999999998874  33332 22     888999


Q ss_pred             Ee
Q 005342          683 VQ  684 (701)
Q Consensus       683 s~  684 (701)
                      +|
T Consensus       304 ~~  305 (330)
T 2hes_X          304 LE  305 (330)
T ss_dssp             C-
T ss_pred             ec
Confidence            87

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-33  Score=299.55  Aligned_cols=293  Identities=11%  Similarity=0.045  Sum_probs=236.5

Q ss_pred             Cccccccc----Cccc------eeEEEee----------cCcceeeeEEEEccC-------CCCCeEEEEeccCCccccc
Q 005342          307 DKLKFPSM----DKSR------LLSLIKQ----------IMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRY  359 (701)
Q Consensus       307 ~~i~iwd~----~~~~------~~~~l~~----------h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~  359 (701)
                      +.|++||+    .+++      ....+..          |.+.|.  +++|+|+       +.|+.|++|| .++.....
T Consensus        68 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~  144 (425)
T 1r5m_A           68 SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVT--CLAWSHDGNSIVTGVENGELRLWN-KTGALLNV  144 (425)
T ss_dssp             TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEE--EEEECTTSSEEEEEETTSCEEEEE-TTSCEEEE
T ss_pred             ceEEEEEEecccCCccccccccccccccccccccccccCCCCceE--EEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeee
Confidence            88999999    8888      5666665          787899  9999999       7899999999 45554444


Q ss_pred             cccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC
Q 005342          360 ASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN  438 (701)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~  438 (701)
                                                   +.+|.. |.+++|+|++++|++++.|+.|++||+.    .++....   ..
T Consensus       145 -----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~---~~  188 (425)
T 1r5m_A          145 -----------------------------LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI----SGTVMQH---FE  188 (425)
T ss_dssp             -----------------------------ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT----TTEEEEE---EC
T ss_pred             -----------------------------ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC----CCcEEEE---ee
Confidence                                         246777 9999999999999999999999999997    4443331   11


Q ss_pred             CCCCC---------------EEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccC
Q 005342          439 SFGGR---------------VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA  503 (701)
Q Consensus       439 ~~~~~---------------v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~  503 (701)
                      .+...               +.++.|+|++. +++++.||.|++||+.                     ++..... + .
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~---------------------~~~~~~~-~-~  244 (425)
T 1r5m_A          189 LKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQIT---------------------EKTPTGK-L-I  244 (425)
T ss_dssp             CC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETT---------------------CSSCSEE-E-C
T ss_pred             ccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcC---------------------CCceeee-e-c
Confidence            23333               89999999865 8899999999999763                     3332221 2 3


Q ss_pred             CCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEE
Q 005342          504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA  580 (701)
Q Consensus       504 ~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~  580 (701)
                      .|...|.+++|+  ++++++++ ||.|++||+++++.+..+.+|...+.+++|+|++.+++++.|+.|++||+++++.+.
T Consensus       245 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  324 (425)
T 1r5m_A          245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLA  324 (425)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeE
Confidence            688899999999  88999999 999999999999999999999999999999999988899999999999999999999


Q ss_pred             eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee---------------eeeeeeeccCCCCCCCC--CeEEE
Q 005342          581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL---------------CSKFLHSFQTGLVPETT--IVNHI  643 (701)
Q Consensus       581 ~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~---------------~~~~l~~~~~~~~~~~~--~v~~v  643 (701)
                      .+.+|...|.+++|+|++++|++++.||.|++||+.+++..               ....+..+. +|.   .  .|+++
T Consensus       325 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~v~~~  400 (425)
T 1r5m_A          325 LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQ---DNDYIFDL  400 (425)
T ss_dssp             EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-CTT---CCCCEEEE
T ss_pred             ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-Ccc---cCCceEEE
Confidence            99999999999999999999999999999999999876400               001333333 332   4  89999


Q ss_pred             EEcCCCCEEEEE-ecCeEEEEECC
Q 005342          644 QFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       644 ~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                      +|+|++++|+++ .||.|++||++
T Consensus       401 ~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          401 SWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EECTTSSEEEEEESSSCCEEEECC
T ss_pred             EccCCCceEEEEecCceEEEEeec
Confidence            999999999986 89999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-31  Score=281.28  Aligned_cols=263  Identities=16%  Similarity=0.175  Sum_probs=217.3

Q ss_pred             ccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCC-ceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342          389 FNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~-~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i  465 (701)
                      |+||.+ |++++|+|+ +++|+||+.|++|++||+....... .+..   ...+|...|.+++|+|+|+++++++.|+.+
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~---~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR---ALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE---EEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            678999 999999998 6899999999999999997432211 1111   335689999999999999999999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE-EEEe
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT-LATF  541 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~-~~~~  541 (701)
                      ++|+.                     ..+..... . ..+...+....++  +.++++++ |+.+++||...... ....
T Consensus       111 ~~~~~---------------------~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~  167 (340)
T 4aow_A          111 RLWDL---------------------TTGTTTRR-F-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD  167 (340)
T ss_dssp             EEEET---------------------TTTEEEEE-E-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred             eEEee---------------------cccceeee-e-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence            99965                     33332221 1 2456677778887  88899999 99999999976544 3445


Q ss_pred             cCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          542 ANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      .+|...+..++|++++   ++++++.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++|+.|++|++||+.++
T Consensus       168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence            6788899999999887   7889999999999999999999999999999999999999999999999999999999997


Q ss_pred             eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee-------------eeEEEEEee
Q 005342          619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL-------------ISHIMFVQI  685 (701)
Q Consensus       619 ~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~-------------i~~~~fs~~  685 (701)
                      +...  .+.    ++    ..|.++.|+|++.+++++.|+.|++||++++..+..+..             |++++|+|+
T Consensus       248 ~~~~--~~~----~~----~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  317 (340)
T 4aow_A          248 KHLY--TLD----GG----DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD  317 (340)
T ss_dssp             EEEE--EEE----CS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT
T ss_pred             ceee--eec----CC----ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC
Confidence            5332  222    33    789999999999988888999999999999888776653             899999987


Q ss_pred             EE
Q 005342          686 VV  687 (701)
Q Consensus       686 ~~  687 (701)
                      ..
T Consensus       318 g~  319 (340)
T 4aow_A          318 GQ  319 (340)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1e-32  Score=298.56  Aligned_cols=287  Identities=14%  Similarity=0.108  Sum_probs=228.5

Q ss_pred             EEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCe
Q 005342          334 CINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADS  406 (701)
Q Consensus       334 ~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~  406 (701)
                      +++|+|+       +.|+.+++||+.++.....          +                   ..|..+....|+|++++
T Consensus        61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~----------~-------------------~~~~~~~~~~~~~~~~~  111 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM----------L-------------------KRADYTAVDTAKLQMRR  111 (420)
T ss_dssp             TCEEEEEETTEEEEEETTEEEEEECCSEETTTT----------S-------------------CSCCEEEEEEECSSSCE
T ss_pred             ceeeeecCCeEEEEEcCCcEEEEEecccceeeE----------E-------------------ecCCceEEEEEecCCCE
Confidence            7889998       7799999999988876555          2                   23322556688999999


Q ss_pred             EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceee
Q 005342          407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES  486 (701)
Q Consensus       407 l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i  486 (701)
                      |++|+.|+.|++||+.    .+++..   ...+|...|.+++|+|++++|++|+.||.|++||+                
T Consensus       112 l~~~~~dg~i~iwd~~----~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~----------------  168 (420)
T 3vl1_A          112 FILGTTEGDIKVLDSN----FNLQRE---IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV----------------  168 (420)
T ss_dssp             EEEEETTSCEEEECTT----SCEEEE---ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEET----------------
T ss_pred             EEEEECCCCEEEEeCC----Ccceee---ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeC----------------
Confidence            9999999999999997    555544   33468999999999999999999999999999976                


Q ss_pred             EEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC---CCC-------------
Q 005342          487 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP---PPI-------------  547 (701)
Q Consensus       487 ~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~---~~~-------------  547 (701)
                           .+++.+.. + .+|...|.+++|+  ++++++++ ||.|++||+++++.+..+..+   ...             
T Consensus       169 -----~~~~~~~~-~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  241 (420)
T 3vl1_A          169 -----KDGSNPRT-L-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ  241 (420)
T ss_dssp             -----TTCCCCEE-E-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred             -----CCCcCceE-E-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence                 33332221 2 3789999999999  88999999 999999999999998888743   333             


Q ss_pred             --------eEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECC
Q 005342          548 --------ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAV  616 (701)
Q Consensus       548 --------i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~spdg~-~l~s~s~D~~I~vwd~~  616 (701)
                              +.+++|+|++ ++++|+.||.|++||+++++.+..+. +|...|++++|+|+++ +|++|+.||.|++||++
T Consensus       242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          242 LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence                    4445567899 99999999999999999988777665 4888999999999998 99999999999999999


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee---------eeee----eeEEEE
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS---------QVLL----ISHIMF  682 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~---------~l~~----i~~~~f  682 (701)
                      +++.    ++..+..+|.   ..|+++.| |++++|+++ .|+.|++|++.+.+...         .+.+    |.+++|
T Consensus       322 ~~~~----~~~~~~~~~~---~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  393 (420)
T 3vl1_A          322 SPEC----PVGEFLINEG---TPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCY  393 (420)
T ss_dssp             CTTS----CSEEEEESTT---SCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEE
T ss_pred             CCcC----chhhhhccCC---CCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEE
Confidence            8742    2222334454   77888855 578888887 79999999997742211         1112    889999


Q ss_pred             EeeEE
Q 005342          683 VQIVV  687 (701)
Q Consensus       683 s~~~~  687 (701)
                      +|+..
T Consensus       394 s~~~~  398 (420)
T 3vl1_A          394 VSDDE  398 (420)
T ss_dssp             ECCSS
T ss_pred             ccCCC
Confidence            98754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-33  Score=299.58  Aligned_cols=288  Identities=14%  Similarity=0.138  Sum_probs=228.5

Q ss_pred             ceeeeEEEEccC------------------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          329 WWVPYCINVMPN------------------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       329 ~v~~~~l~fspd------------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      .+.  +++|+|+                  +.|++|++||+.++.....+                          .. .
T Consensus        14 ~v~--~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~--------------------------~~-~   64 (416)
T 2pm9_A           14 RTA--TFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI--------------------------AS-L   64 (416)
T ss_dssp             ESC--BCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS--------------------------CC-C
T ss_pred             hcc--eEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE--------------------------EE-E
Confidence            456  7788887                  26889999999887643220                          01 1


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC-CCEEEEEECCCcEEEE
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLW  468 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~i~vw  468 (701)
                      .|.. |.+++|+|++++|++|+.|+.|++|++...........   ...+|...|.+++|+|+ ++++++++.||.|++|
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  141 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMA---RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW  141 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEE---ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchh---hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence            4666 99999999999999999999999999973222222232   33468899999999998 8999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      |+.+.....              ..-..........|...|.+++|+   +.++++++ ||.|++||+++++.+..+..+
T Consensus       142 d~~~~~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  207 (416)
T 2pm9_A          142 DMNKCTESP--------------SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT  207 (416)
T ss_dssp             BTTTTSSCT--------------TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC
T ss_pred             ECCCCcccc--------------ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc
Confidence            885542100              000000000113688899999999   46888888 999999999999999888866


Q ss_pred             ------CCCeEEEEEcCCC--eEEEEeCCC---cEEEEeCCCC-ceEEeec-CCCCCeEEEEEec-CCCEEEEEeCCCeE
Q 005342          545 ------PPIATYFILLPQD--LFAFGFDDS---SILVHCPCTK-KTKAKLK-GHQNRITCLAYSL-SLNVLVSSGADAQL  610 (701)
Q Consensus       545 ------~~~i~~l~~spdg--~l~~gs~dg---~I~iwd~~~~-~~~~~l~-~h~~~V~~v~~sp-dg~~l~s~s~D~~I  610 (701)
                            ...+.+++|+|++  ++++++.|+   .|++||++++ ..+..+. +|...|++++|+| ++++|++++.|++|
T Consensus       208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v  287 (416)
T 2pm9_A          208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV  287 (416)
T ss_dssp             CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred             ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCE
Confidence                  7889999999997  899999999   9999999986 6778888 8999999999999 99999999999999


Q ss_pred             EEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEEE-ecCeEEEEECCCCcee
Q 005342          611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHT  671 (701)
Q Consensus       611 ~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~sg-~Dg~I~iwd~~~g~~~  671 (701)
                      ++||+.+++..  ..+.    +|.   ..|++++|+|++ .+++++ .|+.|++||+.+++..
T Consensus       288 ~~wd~~~~~~~--~~~~----~~~---~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          288 LLWNPESAEQL--SQFP----ARG---NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             EEECSSSCCEE--EEEE----CSS---SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             EEeeCCCCccc--eeec----CCC---CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            99999997533  2222    554   889999999999 788885 8999999999887643

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.5e-33  Score=300.69  Aligned_cols=314  Identities=8%  Similarity=0.027  Sum_probs=235.9

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      +.|++||..+++....+..| ..+.  ...|+|+       +.|+.|++||+.++.....                    
T Consensus        78 ~~v~i~d~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------------------  134 (420)
T 3vl1_A           78 GHDFLFNTIIRDGSKMLKRA-DYTA--VDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI--------------------  134 (420)
T ss_dssp             TEEEEEECCSEETTTTSCSC-CEEE--EEEECSSSCEEEEEETTSCEEEECTTSCEEEEE--------------------
T ss_pred             CcEEEEEecccceeeEEecC-CceE--EEEEecCCCEEEEEECCCCEEEEeCCCcceeee--------------------
Confidence            78999999998887777766 4344  5678888       7899999999988776655                    


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s  458 (701)
                               +.+|.. |.+++|+|++++|++|+.|+.|++||+.    .++...   ...+|...|.+++|+|++++|++
T Consensus       135 ---------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~----~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s  198 (420)
T 3vl1_A          135 ---------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK----DGSNPR---TLIGHRATVTDIAIIDRGRNVLS  198 (420)
T ss_dssp             ---------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TCCCCE---EEECCSSCEEEEEEETTTTEEEE
T ss_pred             ---------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC----CCcCce---EEcCCCCcEEEEEEcCCCCEEEE
Confidence                     236777 9999999999999999999999999998    443333   22358899999999999999999


Q ss_pred             EECCCcEEEEecCCCCcc---cc--ccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEE
Q 005342          459 LTQTATHKLWKWQSNKQS---LE--EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF  530 (701)
Q Consensus       459 ~s~dg~i~vwd~~~~~~~---~g--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iw  530 (701)
                      ++.||.|++||+.++...   .+  .....+....|.+.....+.    ..+...+.+++|+  ++++++++ ||.|++|
T Consensus       199 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  274 (420)
T 3vl1_A          199 ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH----EISTSKKNNLEFGTYGKYVIAGHVSGVITVH  274 (420)
T ss_dssp             EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG----GGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred             EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee----ecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence            999999999988655430   00  00111111111111111110    1245667777777  78899999 9999999


Q ss_pred             eCCCCcEEEEec-CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-EEeecC-CCCCeEEEEEecCCCEEEEEe
Q 005342          531 SLETFQTLATFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKG-HQNRITCLAYSLSLNVLVSSG  605 (701)
Q Consensus       531 d~~~~~~~~~~~-~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~-~~~l~~-h~~~V~~v~~spdg~~l~s~s  605 (701)
                      |+++++.+..+. +|...|++++|+|++  ++++|+.||.|++||+++++. +..+.+ |...|+++.+ |++++|++++
T Consensus       275 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~  353 (420)
T 3vl1_A          275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSG  353 (420)
T ss_dssp             ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEET
T ss_pred             ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEec
Confidence            999998777765 478899999999999  899999999999999998754 677777 6667777755 6788999999


Q ss_pred             CCCeEEEEECCCCeeeeee---eeeeccCCCCCCCCCeEEEEEcCCCC----EEEEEecCeEEEEECCC
Q 005342          606 ADAQLCVWDAVGWKKLCSK---FLHSFQTGLVPETTIVNHIQFHPDQI----HLLSIHEGQIDVYEAPT  667 (701)
Q Consensus       606 ~D~~I~vwd~~~g~~~~~~---~l~~~~~~~~~~~~~v~~v~~spdg~----~l~sg~Dg~I~iwd~~~  667 (701)
                      .|++|++||+.........   .......++.   ..|.+++|+|+++    ++++|.+|.+.+|++++
T Consensus       354 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          354 FDTSIKLDIISDPESERPAIEFETPTFLVSND---DAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             TTEEEEEEEECCTTCCSCEECTTSCEEECCSS---CCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             CCccEEEEeccCCCCCccceeccCccEEccCC---cceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            9999999999874211000   0000112343   8899999999998    56668999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.1e-31  Score=293.31  Aligned_cols=289  Identities=16%  Similarity=0.179  Sum_probs=244.2

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGD  381 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D  381 (701)
                      +.|++||+.+++++..+.+|.+.|.  +++|+++     +.|++|++||+.++++...+                     
T Consensus       139 g~i~vwd~~~~~~~~~~~~h~~~v~--~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---------------------  195 (445)
T 2ovr_B          139 NTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNAETGECIHTL---------------------  195 (445)
T ss_dssp             SCEEEEETTTCCEEEECCCCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEE---------------------
T ss_pred             CcEEEEECCCCcEEEEEcCCCCCEE--EEEecCCEEEEEeCCCeEEEEECCcCcEEEEE---------------------
Confidence            8999999999999999999999999  9999988     89999999999998877662                     


Q ss_pred             CCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342          382 DSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT  460 (701)
Q Consensus       382 ~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s  460 (701)
                              .+|.. |.+++|+  ++.+++|+.||.|++||+.    .+++..   ...+|...|.++.|  +++++++|+
T Consensus       196 --------~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~----~~~~~~---~~~~~~~~v~~~~~--~~~~l~~~~  256 (445)
T 2ovr_B          196 --------YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE----TGQCLH---VLMGHVAAVRCVQY--DGRRVVSGA  256 (445)
T ss_dssp             --------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS----SCCEEE---EEECCSSCEEEEEE--CSSCEEEEE
T ss_pred             --------CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC----CCcEEE---EEcCCcccEEEEEE--CCCEEEEEc
Confidence                    35667 8899995  5689999999999999998    554443   22358899999998  788999999


Q ss_pred             CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342          461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLA  539 (701)
Q Consensus       461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~  539 (701)
                      .||.|++||+                     .++..+.. + .+|...|.++++++.++++++ ||.|++||+++++.+.
T Consensus       257 ~dg~i~iwd~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  313 (445)
T 2ovr_B          257 YDFMVKVWDP---------------------ETETCLHT-L-QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH  313 (445)
T ss_dssp             TTSCEEEEEG---------------------GGTEEEEE-E-CCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCCEEEEEEC---------------------CCCcEeEE-e-cCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            9999999965                     44454432 2 468889999999988999999 9999999999999999


Q ss_pred             EecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342          540 TFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~  616 (701)
                      .+.+|...+.++.++++ ++++|+.||.|++||+++++.+..+.+   |...|++++|+  ++++++|+.||.|++||+.
T Consensus       314 ~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          314 TLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             EECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             EEcCCcccEEEEEEeCC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence            99999999988887533 999999999999999999999999987   88899999995  6899999999999999999


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCe----EEEEECCC
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ----IDVYEAPT  667 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~----I~iwd~~~  667 (701)
                      +++........ ...++.   +.|++++|+|++.++++| .||+    |.|||+..
T Consensus       391 ~~~~~~~~~~~-~~~~~~---~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          391 TGEFIRNLVTL-ESGGSG---GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             TCCEEEEEEEC-TTGGGT---CEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCceeeeeecc-ccCCCC---ceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            98644322111 112333   889999999999999997 7887    99999964

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-32  Score=321.75  Aligned_cols=310  Identities=7%  Similarity=0.014  Sum_probs=221.8

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG  380 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  380 (701)
                      +.|++||..++++...+ .|...|.  +++|+|+      +.|++|++||+.+++++..+                    
T Consensus        39 g~I~lw~~~~~~~~~~~-~~~~~V~--~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~--------------------   95 (902)
T 2oaj_A           39 GEVHIYGQQQVEVVIKL-EDRSAIK--EMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTV--------------------   95 (902)
T ss_dssp             SEEEEECSTTCEEEEEC-SSCCCEE--EEEEETTTEEEEEETTCEEEEEETTTCSEEEEE--------------------
T ss_pred             CEEEEEeCCCcEEEEEc-CCCCCEE--EEEEcCCCEEEEEECcCeEEEEECCCCcEEEEE--------------------
Confidence            89999999888776654 4778899  9999998      78999999999998877662                    


Q ss_pred             CCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee--------cCCCCCCCCEEEEEEec
Q 005342          381 DDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL--------LPDNSFGGRVVRLIYSH  451 (701)
Q Consensus       381 D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~--------~~~~~~~~~v~~l~~sp  451 (701)
                                .|.. |++++|+|+++++++|+.||.|++||+.    .+.+..+.        ....+|.+.|.+++|+|
T Consensus        96 ----------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~----~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           96 ----------FVPGKITSIDTDASLDWMLIGLQNGSMIVYDID----RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             ----------ECSSCEEEEECCTTCSEEEEEETTSCEEEEETT----TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             ----------cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECC----CCccccceeccccccccccccCCCCeEEEEEcc
Confidence                      2444 9999999999999999999999999997    45443221        12356889999999999


Q ss_pred             C-CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC------CCeEEeecccCCCCCCeEEEEec--CCEEEEE
Q 005342          452 S-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS------SKLVMTNDIAADPKDSISCFALR--GSHLFSA  522 (701)
Q Consensus       452 d-g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~------~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~  522 (701)
                      + +..+++|+.||.+ +||+.+....          ..+...      .+.... .....|...|.+++|+  |.+|+++
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~~~~----------~~~~~~~~~g~~~~~~~~-~~~~~h~~~V~~v~fspdg~~lasg  229 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVENEIK----------QSFIYELPPFAPGGDFSE-KTNEKRTPKVIQSLYHPNSLHIITI  229 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTTEEE----------EEECCCBCTTCCCSTTCC-CTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred             CCCCEEEEEeCCCcE-EEECCCCceE----------EEEecccCCcCCCccccc-ccccccCCCeEEEEEcCCCCEEEEE
Confidence            6 4688999999999 9987543220          000000      000000 0112456789999999  8999999


Q ss_pred             e-CCeEEEEeCCCCcEEEE--ec---C-------------CCCCeEEEEEc----CCC--eEEEEeCC------------
Q 005342          523 S-GGKISIFSLETFQTLAT--FA---N-------------PPPIATYFILL----PQD--LFAFGFDD------------  565 (701)
Q Consensus       523 s-dg~I~iwd~~~~~~~~~--~~---~-------------~~~~i~~l~~s----pdg--~l~~gs~d------------  565 (701)
                      + ||.|++||+++++.+..  +.   .             +...|++++|+    |++  ++++|+.|            
T Consensus       230 s~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~  309 (902)
T 2oaj_A          230 HEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID  309 (902)
T ss_dssp             ETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred             ECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence            9 99999999999887653  21   1             23468888884    554  55666433            


Q ss_pred             ----------------------------------------------------------------CcEEEEeCCCCceEEe
Q 005342          566 ----------------------------------------------------------------SSILVHCPCTKKTKAK  581 (701)
Q Consensus       566 ----------------------------------------------------------------g~I~iwd~~~~~~~~~  581 (701)
                                                                                      |.|++||+.++.....
T Consensus       310 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~  389 (902)
T 2oaj_A          310 LGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDK  389 (902)
T ss_dssp             EEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECC
T ss_pred             cCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccc
Confidence                                                                            3455555544422111


Q ss_pred             -----------------------------------------ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          582 -----------------------------------------LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       582 -----------------------------------------l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                                                               +.||...+.+++|+|++++||||+.|++|++||+.++..
T Consensus       390 ~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~  469 (902)
T 2oaj_A          390 ASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDI  469 (902)
T ss_dssp             GGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTT
T ss_pred             cccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccc
Confidence                                                     223333444556678999999999999999999998742


Q ss_pred             eeeeeee-----eccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342          621 LCSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL  668 (701)
Q Consensus       621 ~~~~~l~-----~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g  668 (701)
                      .....+.     .+..+|.   ..|++++|+|||++||+| .||+|+|||+.++
T Consensus       470 ~~~~~~~~~l~~~~~~~h~---~~V~svafspdg~~LAsgs~DgtV~lwd~~~~  520 (902)
T 2oaj_A          470 QDNASFEVNLSRTLNKAKE---LAVDKISFAAETLELAVSIETGDVVLFKYEVN  520 (902)
T ss_dssp             TTTBCEEEEHHHHTTCSSS---CCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred             cCCceEEeechhhcCCCCC---CceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence            1111111     0112554   899999999999999996 7999999999876

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-32  Score=293.57  Aligned_cols=237  Identities=11%  Similarity=0.081  Sum_probs=188.3

Q ss_pred             EeecCcceeeeEEEEccC-------CCCCeEEEEeccCC--ccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          323 IKQIMDWWVPYCINVMPN-------ANNETISLKDFPTV--SNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       323 l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      .+.+.+.|.  +++|+|+       +.|++|++||+.++  .....                             +.+|.
T Consensus         7 ~~~~~~~v~--~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~-----------------------------~~~h~   55 (377)
T 3dwl_C            7 LHILPKPSY--EHAFNSQRTEFVTTTATNQVELYEQDGNGWKHART-----------------------------FSDHD   55 (377)
T ss_dssp             EEECSSCCS--CCEECSSSSEEECCCSSSCBCEEEEETTEEEECCC-----------------------------BCCCS
T ss_pred             EecCCCcEE--EEEECCCCCEEEEecCCCEEEEEEccCCceEEEEE-----------------------------EecCC
Confidence            455677899  9999999       68999999999877  33333                             34677


Q ss_pred             c-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCc-eeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342          394 Q-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ  471 (701)
Q Consensus       394 ~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~-~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  471 (701)
                      . |.+++|+|++++|++|+.|+.|++||+.    .+. ... ......|...|.+++|+|++++|++++.|+.|++||+.
T Consensus        56 ~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~----~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  130 (377)
T 3dwl_C           56 KIVTCVDWAPKSNRIVTCSQDRNAYVYEKR----PDGTWKQ-TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE  130 (377)
T ss_dssp             SCEEEEEECTTTCCEEEEETTSSEEEC----------CCCC-EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCeEEEEEcC----CCCceee-eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC
Confidence            7 9999999999999999999999999998    333 111 11234588999999999999999999999999999773


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC---------------
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---------------  533 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~---------------  533 (701)
                      ....                  -.+.. .+...|...|.+++|+  ++++++++ |+.|++||+.               
T Consensus       131 ~~~~------------------~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  191 (377)
T 3dwl_C          131 QEND------------------WWVSK-HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGS  191 (377)
T ss_dssp             ----------------------CCCCE-EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCS
T ss_pred             Cccc------------------ceeee-EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccccccc
Confidence            3210                  00111 1323489999999999  88999999 9999999985               


Q ss_pred             ---CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce----EEeecCCCCCeEEEEEecCCCEEEEEe
Q 005342          534 ---TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVSSG  605 (701)
Q Consensus       534 ---~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~v~~spdg~~l~s~s  605 (701)
                         .++.+..+ +|...|++++|+|++ ++++|+.||.|++||+.+++.    +..+.+|...|.+++|+|++++|++|+
T Consensus       192 ~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  270 (377)
T 3dwl_C          192 RLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY  270 (377)
T ss_dssp             CCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred             ccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence               35566667 899999999999999 999999999999999999987    888999999999999999999999998


Q ss_pred             CCCeEEEEECC
Q 005342          606 ADAQLCVWDAV  616 (701)
Q Consensus       606 ~D~~I~vwd~~  616 (701)
                      +|+.+ +|+..
T Consensus       271 ~~~~~-~~~~~  280 (377)
T 3dwl_C          271 NYSPI-LLQGN  280 (377)
T ss_dssp             SSSEE-EECCC
T ss_pred             CCcEE-EEEeC
Confidence            77666 66655

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2e-31  Score=302.96  Aligned_cols=312  Identities=13%  Similarity=0.147  Sum_probs=239.7

Q ss_pred             cccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          308 KLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       308 ~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      .|.+||  +++.+..+.+|...|.  +++|+|+        +.|++|++||+.+++....          +.+|..    
T Consensus       143 ~v~~~d--~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~----------~~~~~~----  204 (615)
T 1pgu_A          143 VFISWD--SGNSLGEVSGHSQRIN--ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS----------DRTHHK----  204 (615)
T ss_dssp             EEEETT--TCCEEEECCSCSSCEE--EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE----------ECSSSC----
T ss_pred             EEEEEE--CCCcceeeecCCccEE--EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee----------ecccCC----
Confidence            677887  7888999999999999  9999998        6799999999999887776          333321    


Q ss_pred             CCCCCCCccccCCC-ceEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeecCC-C---CCCCCEEEEEEecCC
Q 005342          380 GDDSNDSSCFNDNN-QSRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-N---SFGGRVVRLIYSHSG  453 (701)
Q Consensus       380 ~D~~~~~~~l~~h~-~V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-~---~~~~~v~~l~~spdg  453 (701)
                                  .. .|.+++|+|+ ++++++++.|+.|++||+.    .++...   .. .   .|...|.+++|+ ++
T Consensus       205 ------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~---~~~~~~~~~~~~v~~~~~~-~~  264 (615)
T 1pgu_A          205 ------------QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK----SGEFLK---YIEDDQEPVQGGIFALSWL-DS  264 (615)
T ss_dssp             ------------TTCCEEEEEECSTTCCEEEEEETTCCEEEEETT----TCCEEE---ECCBTTBCCCSCEEEEEES-SS
T ss_pred             ------------CCceEEEEEECCCCCCEEEEEeCCCeEEEEECC----CCCEeE---EecccccccCCceEEEEEc-CC
Confidence                        11 2899999999 9999999999999999997    554433   22 2   588999999999 99


Q ss_pred             CEEEEEECCCcEEEEecCCCCc------c--------------cccccc----ceeeEEeeCCCCeEEeeccc-------
Q 005342          454 DFLVALTQTATHKLWKWQSNKQ------S--------------LEEENV----NMESQLYQPSSKLVMTNDIA-------  502 (701)
Q Consensus       454 ~~l~s~s~dg~i~vwd~~~~~~------~--------------~g~~~~----~~~i~~~d~~~~~~~~~~~~-------  502 (701)
                      +++++++.||.+++||+.+...      .              .+....    ...+.+||..+++.+.. +.       
T Consensus       265 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~-~~~~~~~v~  343 (615)
T 1pgu_A          265 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKT-ISGHNKGIT  343 (615)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEE-ECCCSSCEE
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEE-EeCCCCCEE
Confidence            9999999999999999986654      0              011111    11267777666553322 10       


Q ss_pred             -------------------------CCCCCCeEEEEec-CCEEEEEe-CCe-----------------------------
Q 005342          503 -------------------------ADPKDSISCFALR-GSHLFSAS-GGK-----------------------------  526 (701)
Q Consensus       503 -------------------------~~~~~~v~~l~~s-~~~l~s~s-dg~-----------------------------  526 (701)
                                               ..|...|.+++++ +..+++++ |+.                             
T Consensus       344 ~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~  423 (615)
T 1pgu_A          344 ALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL  423 (615)
T ss_dssp             EEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEE
T ss_pred             EEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEE
Confidence                                     1233444444444 44444444 444                             


Q ss_pred             ---------------------------------------------EEEEeCCCCcEE-EEecCCCCCeEEEEEcCCC-eE
Q 005342          527 ---------------------------------------------ISIFSLETFQTL-ATFANPPPIATYFILLPQD-LF  559 (701)
Q Consensus       527 ---------------------------------------------I~iwd~~~~~~~-~~~~~~~~~i~~l~~spdg-~l  559 (701)
                                                                   |++||+.+++.. ..+.+|...|++++|+|+| +|
T Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  503 (615)
T 1pgu_A          424 TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI  503 (615)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred             eCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEE
Confidence                                                         444444443333 4556788899999999999 99


Q ss_pred             EEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEec----------CCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          560 AFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSL----------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       560 ~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~sp----------dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      ++|+.||.|++||+.+++.+..+.+ |...|++++|+|          ++++|++++.|++|++||+.++.    ..+..
T Consensus       504 ~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~  579 (615)
T 1pgu_A          504 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM----KIIKA  579 (615)
T ss_dssp             EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT----CCEEE
T ss_pred             EEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc----eechh
Confidence            9999999999999999999999998 999999999999          99999999999999999999863    22332


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      + .+|.   ..|++++|+|+++ |+++ .||.|++|++.+
T Consensus       580 ~-~~h~---~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          580 L-NAHK---DGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             T-TSST---TCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             h-hcCc---cceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            3 3555   8999999999999 8875 899999999875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-33  Score=307.77  Aligned_cols=279  Identities=10%  Similarity=-0.015  Sum_probs=206.3

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCC------CCeEEEEcCC
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPD------ADSAVCAKSL  413 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spd------g~~l~s~s~d  413 (701)
                      +.|++|+|||+.++++....                         ...+.+|.. |+.++|+|+      +.+||+|+.|
T Consensus       180 s~D~tI~iWd~~~~~~~~~~-------------------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D  234 (524)
T 2j04_B          180 KHSSCIQIFKMNTSTLHCVK-------------------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE  234 (524)
T ss_dssp             --CEEEEEEEEETTTCCEEE-------------------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT
T ss_pred             CCCceEEEEEccCCCCCceE-------------------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC
Confidence            46889999999877643210                         111345666 999999997      5799999999


Q ss_pred             CcEEEEeccccCCCC-ceeEee---cCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEe
Q 005342          414 EKSVNLKLQLINEPS-ECRTLL---LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLY  489 (701)
Q Consensus       414 ~~v~iw~~~~~~~~~-~~~~l~---~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~  489 (701)
                      |+|++||+....... ....+.   ....+|...|.+++|+|++ .|++|+.||+|++||++++.               
T Consensus       235 gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~---------------  298 (524)
T 2j04_B          235 GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE---------------  298 (524)
T ss_dssp             SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS---------------
T ss_pred             CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC---------------
Confidence            999999997322110 000000   1224588999999999865 79999999999999774321               


Q ss_pred             eCCCCeEEeecccCCCCCCeEEE--Eec--C-CEEEEEe-CCeEEEEeCCCCcEEEEecCCCC--CeEEEEEcCCC-eEE
Q 005342          490 QPSSKLVMTNDIAADPKDSISCF--ALR--G-SHLFSAS-GGKISIFSLETFQTLATFANPPP--IATYFILLPQD-LFA  560 (701)
Q Consensus       490 d~~~~~~~~~~~~~~~~~~v~~l--~~s--~-~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~spdg-~l~  560 (701)
                           ..... + .+|...|.++  +++  | .+|++++ |++|++||+++++....+.+|..  .|.+++|+|++ .++
T Consensus       299 -----~~~~~-~-~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~  371 (524)
T 2j04_B          299 -----VPSFY-D-QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYI  371 (524)
T ss_dssp             -----SCSEE-E-ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEE
T ss_pred             -----CceEE-e-ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEE
Confidence                 11110 2 4789999999  456  5 7899999 99999999998887776666543  57899999999 999


Q ss_pred             EEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee---------eeeecc-
Q 005342          561 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK---------FLHSFQ-  630 (701)
Q Consensus       561 ~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~---------~l~~~~-  630 (701)
                      +++.|++|++||++++..+..+.+|.+.|++++|+|+|++|++|+.|++|++||+..+......         .+..+. 
T Consensus       372 s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~  451 (524)
T 2j04_B          372 YSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDY  451 (524)
T ss_dssp             EECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBC
T ss_pred             EeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEecc
Confidence            9999999999999999988889999999999999999999999999999999997542100000         000000 


Q ss_pred             --------------------CCC-----CCCCCCeEEEEEcCCCC---EEEEE-ecCeEEEEECCC
Q 005342          631 --------------------TGL-----VPETTIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       631 --------------------~~~-----~~~~~~v~~v~~spdg~---~l~sg-~Dg~I~iwd~~~  667 (701)
                                          .+.     .++...|++|+|+|++.   ++|+| .||.|+||++.-
T Consensus       452 sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          452 SIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence                                000     02338899999999964   89988 689999999853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.3e-31  Score=287.37  Aligned_cols=274  Identities=15%  Similarity=0.195  Sum_probs=221.9

Q ss_pred             EEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeE
Q 005342          334 CINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSA  407 (701)
Q Consensus       334 ~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l  407 (701)
                      ++.||++     +.|++|+|||+.+|++...          +..                 .+|.. |++++|+|+|++|
T Consensus       110 ~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~----------~~~-----------------~~~~~~V~sv~fspdg~~l  162 (420)
T 4gga_A          110 LVDWSSGNVLAVALDNSVYLWSASSGDILQL----------LQM-----------------EQPGEYISSVAWIKEGNYL  162 (420)
T ss_dssp             CEEECTTSEEEEEETTEEEEEETTTCCEEEE----------EEC-----------------CSTTCCEEEEEECTTSSEE
T ss_pred             eEEECCCCEEEEEeCCEEEEEECCCCCEEEE----------EEe-----------------cCCCCcEEEEEECCCCCEE
Confidence            7888877     7799999999999988776          222                 36777 9999999999999


Q ss_pred             EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeE
Q 005342          408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ  487 (701)
Q Consensus       408 ~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~  487 (701)
                      |+|+.||.|++||+.    ++++..   ...+|...+.++.+  ++..+++|+.|+.+.+||....              
T Consensus       163 asgs~Dg~v~iWd~~----~~~~~~---~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~--------------  219 (420)
T 4gga_A          163 AVGTSSAEVQLWDVQ----QQKRLR---NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA--------------  219 (420)
T ss_dssp             EEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS--------------
T ss_pred             EEEECCCeEEEEEcC----CCcEEE---EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeeccc--------------
Confidence            999999999999998    565544   33468889988776  4779999999999999976321              


Q ss_pred             EeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc----EEEEecCCCCCeEEEEEcCCC--e
Q 005342          488 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--L  558 (701)
Q Consensus       488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~spdg--~  558 (701)
                           ......  + .+|...+..+.++  +.++++++ |+.+++||..+++    .+.....|...|.+++|+|++  .
T Consensus       220 -----~~~~~~--~-~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~  291 (420)
T 4gga_A          220 -----EHHVAT--L-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV  291 (420)
T ss_dssp             -----SCEEEE--E-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred             -----ceeeEE--e-cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE
Confidence                 111111  2 4788999999999  89999999 9999999998765    356677789999999999988  5


Q ss_pred             EEE--EeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeeeeeeeeeeccCCCC
Q 005342          559 FAF--GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLV  634 (701)
Q Consensus       559 l~~--gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s--~D~~I~vwd~~~g~~~~~~~l~~~~~~~~  634 (701)
                      +++  |+.|++|++||+.+++....+..| ..+.++.|+|+++.+++++  .|++|+|||+.+++++  ..+.    +|.
T Consensus       292 la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v--~~l~----gH~  364 (420)
T 4gga_A          292 LATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV--AELK----GHT  364 (420)
T ss_dssp             EEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE--EEEC----CCS
T ss_pred             EEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE--EEEc----CCC
Confidence            555  458999999999999999988855 5689999999999888765  7999999999997633  2233    676


Q ss_pred             CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342          635 PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       635 ~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                         ..|++++|+|||++|++| .|++|+|||+......+...
T Consensus       365 ---~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~  403 (420)
T 4gga_A          365 ---SRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE  403 (420)
T ss_dssp             ---SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred             ---CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence               899999999999999996 89999999997766554443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.4e-30  Score=284.69  Aligned_cols=300  Identities=16%  Similarity=0.178  Sum_probs=247.5

Q ss_pred             cccCccceeEEEeecCcce-eeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCC
Q 005342          312 PSMDKSRLLSLIKQIMDWW-VPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSND  385 (701)
Q Consensus       312 wd~~~~~~~~~l~~h~~~v-~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~  385 (701)
                      |.....+....+.+|.+.+ .  |+.++.+     +.|++|++||+.+++.+..          +               
T Consensus       103 w~~~~~~~~~~l~~h~~~v~~--~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~----------~---------------  155 (445)
T 2ovr_B          103 WRRGELKSPKVLKGHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT----------L---------------  155 (445)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE--EEEEETTEEEEEETTSCEEEEETTTCCEEEE----------C---------------
T ss_pred             ccCCCcceeEEecccCCCcEE--EEEEcCCEEEEEECCCcEEEEECCCCcEEEE----------E---------------
Confidence            4444445667889999875 5  7888777     8999999999999887766          2               


Q ss_pred             CccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342          386 SSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT  464 (701)
Q Consensus       386 ~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  464 (701)
                          .+|.. |++++|+  ++++++|+.||.|++||+.    ++++..   ...+|...|.++.|+  ++.+++|+.||.
T Consensus       156 ----~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~----~~~~~~---~~~~h~~~v~~~~~~--~~~l~s~s~dg~  220 (445)
T 2ovr_B          156 ----VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE----TGECIH---TLYGHTSTVRCMHLH--EKRVVSGSRDAT  220 (445)
T ss_dssp             ----CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred             ----cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC----cCcEEE---EECCCCCcEEEEEec--CCEEEEEeCCCE
Confidence                36677 9999998  5699999999999999998    555444   334688999999996  567999999999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN  543 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~  543 (701)
                      |++||+                     .+++.+.. + .+|...|.+++++++++++++ ||.|++||+++++.+..+.+
T Consensus       221 i~~wd~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  277 (445)
T 2ovr_B          221 LRVWDI---------------------ETGQCLHV-L-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG  277 (445)
T ss_dssp             EEEEES---------------------SSCCEEEE-E-ECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred             EEEEEC---------------------CCCcEEEE-E-cCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecC
Confidence            999965                     44444332 2 368899999999988899998 99999999999999999999


Q ss_pred             CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                      |...|.++++  ++ .+++|+.||.|++||+++++.+..+.+|...+.++.+  +++++++|+.||.|++||+.+++.. 
T Consensus       278 ~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~-  352 (445)
T 2ovr_B          278 HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL-  352 (445)
T ss_dssp             CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE-
T ss_pred             CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEE-
Confidence            9999999999  67 9999999999999999999999999999999988877  4679999999999999999997533 


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee-----e----eeEEEEEeeEEe
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL-----L----ISHIMFVQIVVK  688 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~-----~----i~~~~fs~~~~~  688 (701)
                       ..+. ....|.   ..|++++|+  ++++++| .||.|++||+.+++.+..+.     +    |++++|+|....
T Consensus       353 -~~~~-~~~~~~---~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  421 (445)
T 2ovr_B          353 -QTLQ-GPNKHQ---SAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV  421 (445)
T ss_dssp             -EEEC-STTSCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred             -EEEc-cCCCCC---CCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEE
Confidence             2232 111244   889999996  5788886 79999999999999998882     2    999999987543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.1e-32  Score=287.92  Aligned_cols=287  Identities=10%  Similarity=0.071  Sum_probs=211.0

Q ss_pred             CcceeeeEEEEccC-------C-------CCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342          327 MDWWVPYCINVMPN-------A-------NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN  392 (701)
Q Consensus       327 ~~~v~~~~l~fspd-------s-------~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h  392 (701)
                      +-+|.  +++|+||       +       .++.|++|++..+......        .+..+           ....|.+|
T Consensus        14 g~PV~--sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~--------~~~~~-----------~~~~l~~~   72 (365)
T 4h5i_A           14 GYPAY--GAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE--------QFHIL-----------SEFALEDN   72 (365)
T ss_dssp             SSCEE--EEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH--------HEEEE-----------EEEECCTT
T ss_pred             CCCEE--EEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee--------eeeee-----------eEEEccCC
Confidence            34688  9999999       2       2457999999876543220        00000           00115567


Q ss_pred             Cc-eEEEEEcCCCCeEEEE-----------cCCCcEEEEeccccCCCCceeE-ee-cCCCCCCCCEEEEEEecCCCEEEE
Q 005342          393 NQ-SRESTSLPDADSAVCA-----------KSLEKSVNLKLQLINEPSECRT-LL-LPDNSFGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       393 ~~-V~~l~~spdg~~l~s~-----------s~d~~v~iw~~~~~~~~~~~~~-l~-~~~~~~~~~v~~l~~spdg~~l~s  458 (701)
                      .. |.+++++  ++.+++|           +.|+.+++|++........... .. .....+...+.+++|||||+++++
T Consensus        73 ~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~  150 (365)
T 4h5i_A           73 DDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAI  150 (365)
T ss_dssp             SCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEE
T ss_pred             CCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEE
Confidence            77 7777654  4466554           4678899999863221111111 11 112234567899999999999876


Q ss_pred             EE--CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCC
Q 005342          459 LT--QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET  534 (701)
Q Consensus       459 ~s--~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~  534 (701)
                      ++  .|++|++||+                     .+++.+.. +  .|...|.+++|+  |+++++++++.+.+|+..+
T Consensus       151 as~~~d~~i~iwd~---------------------~~~~~~~~-~--~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~  206 (365)
T 4h5i_A          151 ASSKVPAIMRIIDP---------------------SDLTEKFE-I--ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVT  206 (365)
T ss_dssp             EESCSSCEEEEEET---------------------TTTEEEEE-E--ECSSCCCEEEECTTSSEEEEECSSCEEEEETTT
T ss_pred             EECCCCCEEEEeEC---------------------CCCcEEEE-e--CCCCceEEEEEccCCceEEeccceeEEEEEecc
Confidence            55  5899999955                     55665432 2  367789999999  8899999977788888878


Q ss_pred             CcEEEE--ecCCCCCeEEEEEcCCC-eEEEEeCCC----cEEEEeCCCCce----EEeecCCCCCeEEEEEecCCCEEEE
Q 005342          535 FQTLAT--FANPPPIATYFILLPQD-LFAFGFDDS----SILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       535 ~~~~~~--~~~~~~~i~~l~~spdg-~l~~gs~dg----~I~iwd~~~~~~----~~~l~~h~~~V~~v~~spdg~~l~s  603 (701)
                      +..+..  ..+|...+.+++|+|++ .+++++.|+    .+++||+.....    ...+.+|...|++++|+|||++||+
T Consensus       207 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las  286 (365)
T 4h5i_A          207 GSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL  286 (365)
T ss_dssp             CCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred             CcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE
Confidence            776543  34577889999999999 999998887    688899876543    4567789999999999999999999


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342          604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL  668 (701)
Q Consensus       604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g  668 (701)
                      |+.|++|+|||+.+++     .+..+..+|.   ..|++++|||||++||++ .|++|+|||+...
T Consensus       287 gs~D~~V~iwd~~~~~-----~~~~~~~gH~---~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          287 ASNDNSIALVKLKDLS-----MSKIFKQAHS---FAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EETTSCEEEEETTTTE-----EEEEETTSSS---SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EcCCCEEEEEECCCCc-----EEEEecCccc---CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999975     3333455776   999999999999999996 8999999999643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-32  Score=293.57  Aligned_cols=295  Identities=13%  Similarity=0.138  Sum_probs=228.8

Q ss_pred             ccccCccceeEEE-eecCcceeeeEEEEcc-C-------CCCCeEEEEeccC---CccccccccccCCCCCCCCCCcccc
Q 005342          311 FPSMDKSRLLSLI-KQIMDWWVPYCINVMP-N-------ANNETISLKDFPT---VSNLRYASSILTDKPNQEGRPLDAS  378 (701)
Q Consensus       311 iwd~~~~~~~~~l-~~h~~~v~~~~l~fsp-d-------s~d~~i~lWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~s  378 (701)
                      .|+ .+++++..+ .+|.+.|.  +++|+| +       +.|++|++||+.+   +.....                   
T Consensus        47 ~w~-~~g~~~~~~~~~h~~~V~--~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-------------------  104 (437)
T 3gre_A           47 MGN-LRGKLIATLMENEPNSIT--SSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS-------------------  104 (437)
T ss_dssp             GGG-CCCCEEEEECTTTTSCEE--EEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC-------------------
T ss_pred             ccc-ccceEEeeeccCCCCceE--EEEECCCCCCEEEEecCCceEEEeECcccccCcccce-------------------
Confidence            587 678888888 89999999  999999 6       8999999999977   332111                   


Q ss_pred             cCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCce---------eEeecCCCCCCCCEEEEE
Q 005342          379 SGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC---------RTLLLPDNSFGGRVVRLI  448 (701)
Q Consensus       379 ~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~---------~~l~~~~~~~~~~v~~l~  448 (701)
                              ....+|.. |.+++|+|++++|++|+.||.|++||+.... .+++         ..+.+...++...+.++.
T Consensus       105 --------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  175 (437)
T 3gre_A          105 --------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQ-QESEVKFLNCECIRKINLKNFGKNEYAVRMR  175 (437)
T ss_dssp             --------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEE-ETTEEEEEEEEEEEEEEGGGGSSCCCEEEEE
T ss_pred             --------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecccc-CCceeeccccceeEEEEccCcccccCceEEE
Confidence                    01125777 9999999999999999999999999994110 1111         111111111567788888


Q ss_pred             --EecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccC-CCCCCeEEEEec--CCEEEEEe
Q 005342          449 --YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFALR--GSHLFSAS  523 (701)
Q Consensus       449 --~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~v~~l~~s--~~~l~s~s  523 (701)
                        ++|++.++++|+.||.|++||+                     .+++.+.. +.. .|...|++++|+  +.++++|+
T Consensus       176 ~~~~~~~~~l~~~~~d~~i~iwd~---------------------~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~  233 (437)
T 3gre_A          176 AFVNEEKSLLVALTNLSRVIIFDI---------------------RTLERLQI-IENSPRHGAVSSICIDEECCVLILGT  233 (437)
T ss_dssp             EEECSSCEEEEEEETTSEEEEEET---------------------TTCCEEEE-EECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEeC---------------------CCCeeeEE-EccCCCCCceEEEEECCCCCEEEEEc
Confidence              5689999999999999999965                     44454432 221 278899999999  88999999


Q ss_pred             -CCeEEEEeCCCCcEEEEec-CCCCCeEEEEEc----CCC-eEEEEeCCCcEEEEeCCCCceEEeecC------------
Q 005342          524 -GGKISIFSLETFQTLATFA-NPPPIATYFILL----PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG------------  584 (701)
Q Consensus       524 -dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s----pdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~------------  584 (701)
                       ||.|++||+++++.+..+. +|...|++++++    |++ ++++|+.||.|++||+++++.+..+.+            
T Consensus       234 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  313 (437)
T 3gre_A          234 TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP  313 (437)
T ss_dssp             TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred             CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence             9999999999999998886 677899999665    467 999999999999999999988877764            


Q ss_pred             --------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee----------------------
Q 005342          585 --------------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS----------------------  628 (701)
Q Consensus       585 --------------h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~----------------------  628 (701)
                                    |...|++++|+ ++++|++|+.|+.|++||+.+++...  .+..                      
T Consensus       314 ~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (437)
T 3gre_A          314 IEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK--AVISPSRFSDVFIPTQVTANLTMLLR  390 (437)
T ss_dssp             BCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE--EEECC--CCCEEEEEEEETTEEEEEE
T ss_pred             cccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce--EEecccccCceEEEEEeecceEEEEE
Confidence                          44568889999 77899999999999999999876432  1110                      


Q ss_pred             -----------ccCCCCCCCCCeEEEEEcCC--CCEEEEE-ecCeEEEEE
Q 005342          629 -----------FQTGLVPETTIVNHIQFHPD--QIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       629 -----------~~~~~~~~~~~v~~v~~spd--g~~l~sg-~Dg~I~iwd  664 (701)
                                 ....|.   ..|++++|+++  +.+|++| .||.|+||+
T Consensus       391 ~~~~~~~~~~~~~~~h~---~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          391 KMKRTSTHSVDDSLYHH---DIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ECC-------------C---CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ecccccccccCcccccc---cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                       001144   89999999998  7788886 799999995

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.8e-31  Score=305.04  Aligned_cols=251  Identities=16%  Similarity=0.211  Sum_probs=211.1

Q ss_pred             ccCCCc-eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342          389 FNDNNQ-SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i  465 (701)
                      +.+|.. |++++|+|++ ++|+||+.|++|++|++...... +.+..   ...+|...|.+++|+|+|++|++|+.||.|
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~---~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQR---RLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEE---EEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccc---eecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            779999 9999999875 79999999999999999742211 12222   234689999999999999999999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe-
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF-  541 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~-  541 (701)
                      ++||+                     .++..... + .+|...|.+++|+  +++|++++ |++|++||.......... 
T Consensus       455 ~vwd~---------------------~~~~~~~~-~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~  511 (694)
T 3dm0_A          455 RLWDL---------------------AAGVSTRR-F-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE  511 (694)
T ss_dssp             EEEET---------------------TTTEEEEE-E-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred             EEEEC---------------------CCCcceeE-E-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence            99965                     45554432 2 4799999999999  88999999 999999998654433322 


Q ss_pred             --cCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342          542 --ANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       542 --~~~~~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~  616 (701)
                        .+|...|.+++|+|++   .+++|+.|+.|++||+++++....+.+|.+.|++++|+|++++|++|+.|++|++||+.
T Consensus       512 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~  591 (694)
T 3dm0_A          512 GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA  591 (694)
T ss_dssp             STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred             CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence              3678889999999987   79999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      +++..     ..+. ++    ..|.+++|+|++.+++++.|+.|+|||+.+++.+..+.
T Consensus       592 ~~~~~-----~~~~-~~----~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          592 EGKKL-----YSLE-AN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             TTEEE-----ECCB-CS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred             CCceE-----EEec-CC----CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhc
Confidence            98533     2122 33    77999999999999999989999999999999887664

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.1e-32  Score=282.71  Aligned_cols=245  Identities=15%  Similarity=0.165  Sum_probs=194.0

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec--CCCEEEEEECCCcE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp--dg~~l~s~s~dg~i  465 (701)
                      +.+|.. |++++|+|+|++||+|+.|++|++||+.    .+....+. .+.+|...|.+++|+|  ++++|++|+.|++|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~----~~~~~~~~-~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v   83 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR----NGGQILIA-DLRGHEGPVWQVAWAHPMYGNILASCSYDRKV   83 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEE----TTEEEEEE-EEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEec----CCCcEEEE-EEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence            568999 9999999999999999999999999997    44321111 2346899999999986  48999999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcE---
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQT---  537 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~---  537 (701)
                      ++||+.++.                   ...... + .+|...|.+++|+    +.+|++++ |+.|++||++++..   
T Consensus        84 ~iWd~~~~~-------------------~~~~~~-~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           84 IIWREENGT-------------------WEKSHE-H-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV  142 (316)
T ss_dssp             EEECCSSSC-------------------CCEEEE-E-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred             EEEECCCCc-------------------ceEEEE-c-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence            999763210                   011111 2 4788999999998    46899999 99999999987632   


Q ss_pred             EEEecCCCCCeEEEEEcCC-----------------C-eEEEEeCCCcEEEEeCCCC---ceEEeecCCCCCeEEEEEec
Q 005342          538 LATFANPPPIATYFILLPQ-----------------D-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNRITCLAYSL  596 (701)
Q Consensus       538 ~~~~~~~~~~i~~l~~spd-----------------g-~l~~gs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~v~~sp  596 (701)
                      ...+.+|...+.+++|+|+                 + ++++|+.|+.|++||++++   +.+..+.+|...|++++|+|
T Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp  222 (316)
T 3bg1_A          143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP  222 (316)
T ss_dssp             CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC
T ss_pred             eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC
Confidence            3456678889999999997                 5 8999999999999999755   46778899999999999999


Q ss_pred             CC----CEEEEEeCCCeEEEEECCCCee--eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          597 SL----NVLVSSGADAQLCVWDAVGWKK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       597 dg----~~l~s~s~D~~I~vwd~~~g~~--~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                      ++    ++||+|+.|++|++||+.++..  .....+.    +|.   ..|++++|+|+|++|+++ .|++|++|+..
T Consensus       223 ~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~----~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          223 SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH----KFN---DVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE----ECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh----cCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            86    7999999999999999987311  0111222    344   889999999999999985 89999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.2e-31  Score=310.27  Aligned_cols=314  Identities=11%  Similarity=0.090  Sum_probs=254.5

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      +.|++||+.+++.+..+.+|.+.|.  +++|+|+       +.|+.|++||+.+++....+                   
T Consensus        35 g~v~iwd~~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-------------------   93 (814)
T 3mkq_A           35 GRVEIWNYETQVEVRSIQVTETPVR--AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-------------------   93 (814)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEE--EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-------------------
T ss_pred             CEEEEEECCCCceEEEEecCCCcEE--EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-------------------
Confidence            7899999999999999999999999  9999999       78999999999998876662                   


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC-ceeEeecCCCCCCCCEEEEEEec-CCCEE
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIYSH-SGDFL  456 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~-~~~~l~~~~~~~~~~v~~l~~sp-dg~~l  456 (701)
                                .+|.. |++++|+|++++|++|+.||.|++|++.    .+ .+..   ...+|...|.+++|+| ++..+
T Consensus        94 ----------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~----~~~~~~~---~~~~~~~~v~~~~~~p~~~~~l  156 (814)
T 3mkq_A           94 ----------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQ---TFEGHEHFVMCVAFNPKDPSTF  156 (814)
T ss_dssp             ----------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGG----GTSEEEE---EEECCSSCEEEEEEETTEEEEE
T ss_pred             ----------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC----CCceEEE---EEcCCCCcEEEEEEEcCCCCEE
Confidence                      36777 9999999999999999999999999997    33 3222   2235789999999999 89999


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEe
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFS  531 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd  531 (701)
                      ++++.||.|++||+..                     +..... +...+...+.+++|+    +.++++++ ||.|++||
T Consensus       157 ~~~~~dg~v~vwd~~~---------------------~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d  214 (814)
T 3mkq_A          157 ASGCLDRTVKVWSLGQ---------------------STPNFT-LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD  214 (814)
T ss_dssp             EEEETTSEEEEEETTC---------------------SSCSEE-EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred             EEEeCCCeEEEEECCC---------------------CcceeE-EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            9999999999997633                     221111 223455788999996    77899998 99999999


Q ss_pred             CCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCC--EEEEEeCCC
Q 005342          532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN--VLVSSGADA  608 (701)
Q Consensus       532 ~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~--~l~s~s~D~  608 (701)
                      +.+++.+..+.+|...|.+++|+|++ ++++|+.||.|++||+.+++.+..+..|...+.+++|+|++.  ++++++ |+
T Consensus       215 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~  293 (814)
T 3mkq_A          215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DN  293 (814)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TT
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CC
Confidence            99999999999999999999999999 999999999999999999999999999999999999999987  455555 67


Q ss_pred             eEEEEECCCCeeeeee-----eee--------------------------------eccCCCCCCCCCeEEEEEcCCCCE
Q 005342          609 QLCVWDAVGWKKLCSK-----FLH--------------------------------SFQTGLVPETTIVNHIQFHPDQIH  651 (701)
Q Consensus       609 ~I~vwd~~~g~~~~~~-----~l~--------------------------------~~~~~~~~~~~~v~~v~~spdg~~  651 (701)
                      .+.+|++..+......     .+.                                ....++   ...+.+++|+|+|++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~  370 (814)
T 3mkq_A          294 GFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV---DVFPQSLAHSPNGRF  370 (814)
T ss_dssp             EEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCC---SSCCSEEEECTTSSE
T ss_pred             CEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCC---ccCCceeEECCCCCE
Confidence            7889987654211100     000                                000111   256789999999999


Q ss_pred             EEEEecCeEEEEECCCCceeeeeee-eeEEEEEeeE
Q 005342          652 LLSIHEGQIDVYEAPTLNHTSQVLL-ISHIMFVQIV  686 (701)
Q Consensus       652 l~sg~Dg~I~iwd~~~g~~~~~l~~-i~~~~fs~~~  686 (701)
                      ++++.|+.+.+|++.......  .+ +++++|+|+.
T Consensus       371 la~~~~~~~~i~~~~~~~~~~--~~~i~~~~~spdg  404 (814)
T 3mkq_A          371 VTVVGDGEYVIYTALAWRNKA--FGKCQDFVWGPDS  404 (814)
T ss_dssp             EEEEETTEEEEEETTTTEEEE--EEECSEEEECTTS
T ss_pred             EEEecCCEEEEEECccccccC--CCceEEEEEeCCC
Confidence            999889999999986543322  23 8888888754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.8e-31  Score=308.33  Aligned_cols=287  Identities=15%  Similarity=0.190  Sum_probs=242.1

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      +..+.+.+|.+.|.  +++|+|+       +.||+|+|||+.++.....+                             .
T Consensus         4 ~~~~~~~~h~~~v~--~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-----------------------------~   52 (814)
T 3mkq_A            4 DIKKTFSNRSDRVK--GIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-----------------------------Q   52 (814)
T ss_dssp             CCEEEEEEECSCEE--EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-----------------------------E
T ss_pred             ccceeeecCCCceE--EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-----------------------------e
Confidence            45678899999999  9999999       77999999999998776662                             3


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      +|.. |.+++|+|+|++|++|+.||.|++|++.    +++...   ...+|...|.+++|+|+|+++++++.||.|++||
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~----~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~  125 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN----TGEKVV---DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN  125 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT----TCCEEE---EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC----CCcEEE---EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence            5667 9999999999999999999999999998    554433   2235889999999999999999999999999997


Q ss_pred             cCCCCccccccccceeeEEeeCCCC-eEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      +.                     ++ ..... + .+|...|.+++|+   ++.+++++ ||.|++||+.++.....+..+
T Consensus       126 ~~---------------------~~~~~~~~-~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  182 (814)
T 3mkq_A          126 WE---------------------NNWALEQT-F-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG  182 (814)
T ss_dssp             GG---------------------GTSEEEEE-E-ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred             CC---------------------CCceEEEE-E-cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC
Confidence            63                     22 22221 2 3688899999998   66889998 999999999988877777655


Q ss_pred             C-CCeEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          545 P-PIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       545 ~-~~i~~l~~sp--dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      . ..+.+++|+|  ++ ++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+++++++++.||.|++||+.+++.
T Consensus       183 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~  262 (814)
T 3mkq_A          183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV  262 (814)
T ss_dssp             CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred             CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            4 8899999999  88 999999999999999999999999999999999999999999999999999999999999753


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCC--EEEEEecCeEEEEECCCCceeeee
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQI--HLLSIHEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~--~l~sg~Dg~I~iwd~~~g~~~~~l  674 (701)
                      ..  .   +. .+.   ..+.+++|+|+|+  +++++.|+.+.+|++.++.....+
T Consensus       263 ~~--~---~~-~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (814)
T 3mkq_A          263 EK--T---LN-VGL---ERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSL  309 (814)
T ss_dssp             EE--E---EC-CSS---SSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEE
T ss_pred             EE--E---ee-cCC---CcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEE
Confidence            32  2   22 333   7899999999987  577788999999998766544433

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.4e-30  Score=270.14  Aligned_cols=268  Identities=14%  Similarity=0.177  Sum_probs=215.9

Q ss_pred             EEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeE
Q 005342          334 CINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSA  407 (701)
Q Consensus       334 ~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l  407 (701)
                      +|+|||+     +.|++|+|||+.+|+++..          +..                 .+|.. |.+++|+|+|++|
T Consensus        30 ~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~----------~~~-----------------~~~~~~V~~v~~~~~~~~l   82 (318)
T 4ggc_A           30 LVDWSSGNVLAVALDNSVYLWSASSGDILQL----------LQM-----------------EQPGEYISSVAWIKEGNYL   82 (318)
T ss_dssp             CEEECTTSEEEEEETTEEEEEETTTCCEEEE----------EEC-----------------CSTTCCEEEEEECTTSSEE
T ss_pred             EEEECCCCEEEEEeCCEEEEEECCCCCEEEE----------EEe-----------------cCCCCeEEEEEECCCCCEE
Confidence            8999998     7799999999999998876          322                 36777 9999999999999


Q ss_pred             EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeE
Q 005342          408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ  487 (701)
Q Consensus       408 ~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~  487 (701)
                      ++|+.||+|++|++.    ++++..   ...+|...+.++  ++++..+++++.++.+.+|+....              
T Consensus        83 ~sgs~Dg~v~iw~~~----~~~~~~---~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~--------------  139 (318)
T 4ggc_A           83 AVGTSSAEVQLWDVQ----QQKRLR---NMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVA--------------  139 (318)
T ss_dssp             EEEETTSEEEEEETT----TTEEEE---EEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSS--------------
T ss_pred             EEEECCCcEEEeecC----CceeEE---EecCccceEEEe--ecCCCEEEEEecCCceEeeecCCC--------------
Confidence            999999999999998    665544   223577777664  556789999999999999965221              


Q ss_pred             EeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE----EEEecCCCCCeEEEEEcCCC--e
Q 005342          488 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT----LATFANPPPIATYFILLPQD--L  558 (701)
Q Consensus       488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~----~~~~~~~~~~i~~l~~spdg--~  558 (701)
                            ...+.. + .+|...+.++.++  ++++++++ ||.|++||+++++.    ......+...|.+++++|++  .
T Consensus       140 ------~~~~~~-~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  211 (318)
T 4ggc_A          140 ------EHHVAT-L-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV  211 (318)
T ss_dssp             ------SCEEEE-E-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred             ------ceeEEE-E-cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcE
Confidence                  112211 2 3788899999999  88999999 99999999988753    34555678899999999987  3


Q ss_pred             --EEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeeeeeeeeeeccCCCC
Q 005342          559 --FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLV  634 (701)
Q Consensus       559 --l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s--~D~~I~vwd~~~g~~~~~~~l~~~~~~~~  634 (701)
                        +++++.++.|++||........... |...+..+.|+|+++.+++++  .|+.|++||+.+++++  ..+.    +|.
T Consensus       212 ~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~--~~l~----gH~  284 (318)
T 4ggc_A          212 LATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV--AELK----GHT  284 (318)
T ss_dssp             EEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE--EEEC----CCS
T ss_pred             EEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE--EEEc----CCC
Confidence              3567788999999999887776654 667899999999999887655  7999999999998643  2233    666


Q ss_pred             CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342          635 PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN  669 (701)
Q Consensus       635 ~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~  669 (701)
                         ..|++++|+|||++|++| .||+|+|||+....
T Consensus       285 ---~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          285 ---SRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             ---SCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             ---CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence               899999999999999996 89999999997654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-30  Score=274.65  Aligned_cols=257  Identities=12%  Similarity=0.091  Sum_probs=219.7

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +.+|.. |.+++|+|+|++|++|+.||.|++||+.    .++...   ...+|...|.+++|+|++++|++++.||.|++
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~----~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL----NGERLG---TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETT----TCCEEE---EECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCC----Cchhhh---hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            789999 9999999999999999999999999997    554444   23468899999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C-----CeEEEEeCCCCc---
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-----GKISIFSLETFQ---  536 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d-----g~I~iwd~~~~~---  536 (701)
                      ||+                     .+++.+.. +  .+...|.+++|+  +.++++++ +     |.|++||+.++.   
T Consensus       101 wd~---------------------~~~~~~~~-~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~  156 (369)
T 3zwl_B          101 WDV---------------------SNGQCVAT-W--KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH  156 (369)
T ss_dssp             EET---------------------TTCCEEEE-E--ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred             EEC---------------------CCCcEEEE-e--ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce
Confidence            965                     45554432 2  267889999999  88898888 7     999999987653   


Q ss_pred             --------EEEEecCCCC--CeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEEecCCCEEEEE
Q 005342          537 --------TLATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSS  604 (701)
Q Consensus       537 --------~~~~~~~~~~--~i~~l~~spdg-~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~spdg~~l~s~  604 (701)
                              ....+..+..  .+.+++|+|++ .+++|+.||.|++||+++ ++.+..+.+|...|.+++|+|++++|+++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  236 (369)
T 3zwl_B          157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS  236 (369)
T ss_dssp             CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe
Confidence                    3344445555  89999999999 999999999999999998 78889999999999999999999999999


Q ss_pred             eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC--------------eEEEEECCCCc
Q 005342          605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--------------QIDVYEAPTLN  669 (701)
Q Consensus       605 s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg--------------~I~iwd~~~g~  669 (701)
                      +.|+.|++||+.+++....  +.    +.    ..+.+++|+|++++++++ .++              .+++||..+++
T Consensus       237 ~~d~~i~v~d~~~~~~~~~--~~----~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  306 (369)
T 3zwl_B          237 SRDTNSFLVDVSTLQVLKK--YE----TD----CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE  306 (369)
T ss_dssp             ETTSEEEEEETTTCCEEEE--EE----CS----SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred             cCCceEEEEECCCCceeee--ec----CC----CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence            9999999999999764322  22    22    789999999999999986 566              89999999999


Q ss_pred             eeeeeee----eeEEEEEeeE
Q 005342          670 HTSQVLL----ISHIMFVQIV  686 (701)
Q Consensus       670 ~~~~l~~----i~~~~fs~~~  686 (701)
                      .+..+.+    |++++|+|+.
T Consensus       307 ~~~~~~~~~~~v~~~~~s~~~  327 (369)
T 3zwl_B          307 EIGRVQGHFGPLNTVAISPQG  327 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTS
T ss_pred             chhheecccCcEEEEEECCCC
Confidence            9999887    9999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.2e-30  Score=281.45  Aligned_cols=289  Identities=15%  Similarity=0.110  Sum_probs=233.1

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG  380 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  380 (701)
                      +.|++||+.+++++..+.+|.+.|.  +++|+|+      +.|++|++||+.++++...+                    
T Consensus       142 g~i~vwd~~~~~~~~~~~~h~~~V~--~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--------------------  199 (464)
T 3v7d_B          142 KMIRVYDSINKKFLLQLSGHDGGVW--ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVF--------------------  199 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEE--EEEECSTTEEEEEETTSCEEEEETTTTEEEEEE--------------------
T ss_pred             CcEEEEECCCCcEEEEEeCCCcCEE--EEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEE--------------------
Confidence            8999999999999999999999999  9999998      89999999999998877662                    


Q ss_pred             CCCCCCccccCCCc-eEEEEEc--CCCCeEEEEcCCCcEEEEeccccCCCCceeE----------------eecCCCCCC
Q 005342          381 DDSNDSSCFNDNNQ-SRESTSL--PDADSAVCAKSLEKSVNLKLQLINEPSECRT----------------LLLPDNSFG  441 (701)
Q Consensus       381 D~~~~~~~l~~h~~-V~~l~~s--pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~----------------l~~~~~~~~  441 (701)
                               .+|.. |.+++|+  |++.++++|+.|+.|++||+...........                +.....+|.
T Consensus       200 ---------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          200 ---------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             ---------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             ---------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence                     35667 9999998  6889999999999999999974321110000                000123577


Q ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE
Q 005342          442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  519 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l  519 (701)
                      ..|.++  +++++++++|+.||.|++||+                     .+++.+.. + .+|...|.+++|+  ++++
T Consensus       271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l  325 (464)
T 3v7d_B          271 ASVRTV--SGHGNIVVSGSYDNTLIVWDV---------------------AQMKCLYI-L-SGHTDRIYSTIYDHERKRC  325 (464)
T ss_dssp             SCEEEE--EEETTEEEEEETTSCEEEEET---------------------TTTEEEEE-E-CCCSSCEEEEEEETTTTEE
T ss_pred             ceEEEE--cCCCCEEEEEeCCCeEEEEEC---------------------CCCcEEEE-e-cCCCCCEEEEEEcCCCCEE
Confidence            777776  688999999999999999965                     55554432 2 4788999999999  8899


Q ss_pred             EEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC
Q 005342          520 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL  598 (701)
Q Consensus       520 ~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg  598 (701)
                      ++|+ ||.|++||+++++.+..+.+|...|.++++++. ++++|+.||.|++||+.++....... |...+..++|+|++
T Consensus       326 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~  403 (464)
T 3v7d_B          326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSD  403 (464)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECS
T ss_pred             EEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCC-EEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCC
Confidence            9999 999999999999999999999999999999733 99999999999999999987766654 66778889999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEE
Q 005342          599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY  663 (701)
Q Consensus       599 ~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iw  663 (701)
                      +++++|+ |+.|++||+.+|+.+     .....+|.   ..|++++|+ ++.+++++ .||.+.+|
T Consensus       404 ~~l~~~~-dg~i~iwd~~~g~~~-----~~~~~~~~---~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          404 NILVSGS-ENQFNIYNLRSGKLV-----HANILKDA---DQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCEE-----ESCTTTTC---SEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             CEEEEec-CCeEEEEECCCCcEE-----ehhhccCC---CcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            9999999 899999999998633     22223444   899999997 33444444 67665444

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-30  Score=266.08  Aligned_cols=256  Identities=11%  Similarity=0.080  Sum_probs=215.9

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      +.+|.. |.+++| |++++|++|+.||.|++||+.    .+.....   ...|...|.+++|+|+++++++++.||.+++
T Consensus        14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~----~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD----DQWLGTV---VYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEES----SSEEEEE---EEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC----CCEEEEE---eecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            678998 999999 999999999999999999997    4544332   2247899999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP  546 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~  546 (701)
                      |++..                  ...+..... + .+|...|.+++|+++++++++ ||.|++||  .++....+..|..
T Consensus        86 ~~~~~------------------~~~~~~~~~-~-~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~  143 (313)
T 3odt_A           86 VPLFA------------------TSGEDPLYT-L-IGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA  143 (313)
T ss_dssp             EETTC------------------CTTSCC-CE-E-CCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred             EEeee------------------cCCCCcccc-h-hhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence            98733                  233332221 2 478899999999988999999 99999999  6778888889999


Q ss_pred             CeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342          547 IATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       547 ~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                      .+.+++++| ++ .+++++.||.|++||  .++....+.. |...|.+++|+|++. +++++.|+.|++||+++++..  
T Consensus       144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~--  218 (313)
T 3odt_A          144 SVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL--  218 (313)
T ss_dssp             CEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE--
T ss_pred             ceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh--
Confidence            999999998 77 999999999999999  5566777777 899999999999998 899999999999999997533  


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee----eeEEEEEeeE
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIV  686 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~  686 (701)
                      ..+.    +|.   ..|++++|+|++.+++.+.||.|++||+.+++.+..+..    |++++|+|..
T Consensus       219 ~~~~----~~~---~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  278 (313)
T 3odt_A          219 RTYE----GHE---SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNG  278 (313)
T ss_dssp             EEEE----CCS---SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred             hhhh----cCC---ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCC
Confidence            2222    454   899999999999644445899999999999999998877    9999998864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.98  E-value=2e-30  Score=278.55  Aligned_cols=312  Identities=10%  Similarity=0.048  Sum_probs=234.0

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEcc-C-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMP-N-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS  378 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fsp-d-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  378 (701)
                      ..+++|+.++++....+.+|.+.|.  +++|+| +       +.|++|++||+.++.....+          ........
T Consensus        23 ~~~~v~~~~~~~~~~~~~~h~~~v~--~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----------~~~~~~~~   90 (408)
T 4a11_B           23 STRRVLGLELNKDRDVERIHGGGIN--TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY----------TCKAVCSI   90 (408)
T ss_dssp             HHHHHHTEEECTTEEECCCCSSCEE--EEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE----------EECEEEEE
T ss_pred             CcceeeccccCcceeeeeccCCcEE--EEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE----------eccccccc
Confidence            6789999999999999999999999  999999 6       78999999999988766552          10000000


Q ss_pred             cCCCCCCCccccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC---
Q 005342          379 SGDDSNDSSCFNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG---  453 (701)
Q Consensus       379 ~~D~~~~~~~l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg---  453 (701)
                            ......+|.. |.+++|+| ++.+|++++.|+.|++||+.    .++.....    .+...+.++.|+|.+   
T Consensus        91 ------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~  156 (408)
T 4a11_B           91 ------GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN----TLQTADVF----NFEETVYSHHMSPVSTKH  156 (408)
T ss_dssp             ------CTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT----TTEEEEEE----ECSSCEEEEEECSSCSSC
T ss_pred             ------cccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC----CCccceec----cCCCceeeeEeecCCCCC
Confidence                  0111346888 99999999 78899999999999999998    55443322    156789999999854   


Q ss_pred             CEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EEEEEe-CCeEEE
Q 005342          454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISI  529 (701)
Q Consensus       454 ~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l~s~s-dg~I~i  529 (701)
                      .++++++.||.+++||+                     .++..+.. + ..|...|.+++|+  +. .+++++ ||.|++
T Consensus       157 ~~~~~~~~~~~v~~~d~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i  213 (408)
T 4a11_B          157 CLVAVGTRGPKVQLCDL---------------------KSGSCSHI-L-QGHRQEILAVSWSPRYDYILATASADSRVKL  213 (408)
T ss_dssp             CEEEEEESSSSEEEEES---------------------SSSCCCEE-E-CCCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             cEEEEEcCCCeEEEEeC---------------------CCcceeee-e-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEE
Confidence            49999999999999976                     33333221 2 4688999999999  55 588888 999999


Q ss_pred             EeCCCCc-EEEEe---------------cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-----C
Q 005342          530 FSLETFQ-TLATF---------------ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----N  587 (701)
Q Consensus       530 wd~~~~~-~~~~~---------------~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----~  587 (701)
                      ||++++. .+..+               .+|...|.+++|+|++ ++++++.||.|++||+.+++....+.++.     .
T Consensus       214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  293 (408)
T 4a11_B          214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK  293 (408)
T ss_dssp             EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSS
T ss_pred             EECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccc
Confidence            9998765 44444               4678899999999999 99999999999999999987765554321     1


Q ss_pred             CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       588 ~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                      .+........+..+++++.|+.|++||+.+++...  .   +. +|.   ..|++++|+|++++|+++ .||.|++||+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~---~~-~~~---~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT--M---LK-GHY---KTVDCCVFQSNFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE--E---EC-CCS---SCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred             cceeEEecCCCceEEEEecCCEEEEEECcCCccee--e---ec-cCC---CeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence            22222222345567777889999999999975332  2   22 555   899999999999999996 79999999999


Q ss_pred             CCceeeeeee
Q 005342          667 TLNHTSQVLL  676 (701)
Q Consensus       667 ~g~~~~~l~~  676 (701)
                      +++.+.....
T Consensus       365 ~~~~~~~~~~  374 (408)
T 4a11_B          365 LYEPVPDDDE  374 (408)
T ss_dssp             C---------
T ss_pred             CCCccCCCCc
Confidence            9988776554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.98  E-value=2.8e-31  Score=289.36  Aligned_cols=268  Identities=12%  Similarity=0.128  Sum_probs=203.4

Q ss_pred             ccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcE
Q 005342          389 FNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i  465 (701)
                      ..+|.. |++++|+| ++++||+|+.||.|+|||+.    .+.... .....+|.+.|.+++|+| ++.+|++|+.||+|
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~----~~~~~~-~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFG----IKDKPT-FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSS----CCSCCE-EECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECC----CCCcee-EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            347888 99999999 56799999999999999997    333222 124457999999999998 68899999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      ++||+++                     +.+........+...+.+++|+  +.+|++|+ ||.|++||++ ++.+..+.
T Consensus       190 ~iwd~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~  247 (435)
T 4e54_B          190 RLQDFKG---------------------NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR  247 (435)
T ss_dssp             EEEETTS---------------------CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSB
T ss_pred             EEeeccC---------------------CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEe
Confidence            9997633                     3222111112344567889998  88999999 9999999995 56677888


Q ss_pred             CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEe---ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          543 NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK---LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       543 ~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~---l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +|...|++++|+|++  ++++|+.|+.|++||+++++....   ..+|...|++++|+|+|++|++++.||+|++||+.+
T Consensus       248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred             cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence            999999999999998  888999999999999988765433   356999999999999999999999999999999999


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-------------ecCeEEEEECCCCceeeeeee-----eeE
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-------------HEGQIDVYEAPTLNHTSQVLL-----ISH  679 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-------------~Dg~I~iwd~~~g~~~~~l~~-----i~~  679 (701)
                      ++.......+.......   ..+....|+|++..++++             .++.|++||..+|+.+.++..     |.+
T Consensus       328 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s  404 (435)
T 4e54_B          328 WDCPLGLIPHPHRHFQH---LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS  404 (435)
T ss_dssp             SSSEEEECCCCCCCCSS---SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCC
T ss_pred             CccceEEeccccccccc---ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEE
Confidence            76432111110000000   223345566666665553             235799999999999988764     666


Q ss_pred             E-EEEeeE
Q 005342          680 I-MFVQIV  686 (701)
Q Consensus       680 ~-~fs~~~  686 (701)
                      + +|+|+.
T Consensus       405 ~~~fspdg  412 (435)
T 4e54_B          405 LNEFNPMG  412 (435)
T ss_dssp             EEEECTTS
T ss_pred             EEEECCCC
Confidence            6 588753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.6e-30  Score=274.76  Aligned_cols=254  Identities=14%  Similarity=0.150  Sum_probs=206.2

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCc
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTAT  464 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~  464 (701)
                      .+.+|.. |.+++|+|++++|++|+.||.|++|++.    .+....+. ...+|...|.+++|+|+  +++|++++.||.
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~----~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE----GETHKLID-TLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEE----TTEEEEEE-EECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecC----CCcceeee-EecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            4678999 9999999999999999999999999996    22222211 33468999999999987  999999999999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCc-
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQ-  536 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~-  536 (701)
                      |++||+                     .++.  ...  ....|...|.+++|+    +.++++++ ||.|++||+.++. 
T Consensus        81 v~iwd~---------------------~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  137 (379)
T 3jrp_A           81 VLIWKE---------------------ENGRWSQIA--VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT  137 (379)
T ss_dssp             EEEEEE---------------------ETTEEEEEE--EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred             EEEEEc---------------------CCCceeEee--eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence            999976                     3333  222  124688999999999    46889998 9999999998873 


Q ss_pred             -EEEEecCCCCCeEEEEEcC-------------CC-eEEEEeCCCcEEEEeCCCCc----eEEeecCCCCCeEEEEEecC
Q 005342          537 -TLATFANPPPIATYFILLP-------------QD-LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLS  597 (701)
Q Consensus       537 -~~~~~~~~~~~i~~l~~sp-------------dg-~l~~gs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~v~~spd  597 (701)
                       ....+.+|...|.+++|+|             ++ ++++|+.||.|++||++++.    .+..+.+|...|.+++|+|+
T Consensus       138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  217 (379)
T 3jrp_A          138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  217 (379)
T ss_dssp             CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence             4456678999999999999             68 99999999999999998764    55678889999999999999


Q ss_pred             ---CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeee
Q 005342          598 ---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ  673 (701)
Q Consensus       598 ---g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~  673 (701)
                         +++|++++.||.|++||+.++.......+. ....|.   ..|++++|+|+|++|+++ .||.|++|++.++.....
T Consensus       218 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~  293 (379)
T 3jrp_A          218 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL-KEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP  293 (379)
T ss_dssp             CSSSEEEEEEETTSCEEEEEESSTTSCCEEEES-SSSCCS---SCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEE
T ss_pred             CCCCCeEEEEeCCCEEEEEeCCCCCccceeeee-ccccCC---CcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcccc
Confidence               899999999999999999987422222222 112343   889999999999999985 899999999986544433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=2.6e-30  Score=270.63  Aligned_cols=267  Identities=14%  Similarity=0.158  Sum_probs=209.0

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec--CCCEEEEEECCCc
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTAT  464 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp--dg~~l~s~s~dg~  464 (701)
                      .+.+|.. |.+++|+|++++|++|+.||.|++|++.......+...   ...+|...|.+++|+|  |+++|++++.||.
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD---SWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEE---EEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecc---eeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            4678999 99999999999999999999999999973221112222   2346889999999999  6999999999999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLA  539 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~~~  539 (701)
                      |++||+..+.....            ......+.. + ..|...|.+++|+    +.++++++ ||.|++||+++++.+.
T Consensus        83 v~vwd~~~~~~~~~------------~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           83 VKLWEEDPDQEECS------------GRRWNKLCT-L-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             EEEEEECTTSCTTS------------SCSEEEEEE-E-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred             EEEEecCCCccccc------------ccCcceeee-e-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence            99998855421000            000022221 2 4688999999999    56788988 9999999998877544


Q ss_pred             Eec-------------CCCCCeEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCce--EEeecCCCCCeEEEEEecCC--
Q 005342          540 TFA-------------NPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSL--  598 (701)
Q Consensus       540 ~~~-------------~~~~~i~~l~~spd---g-~l~~gs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~v~~spdg--  598 (701)
                      .+.             ++...+.+++|+|+   + .+++++.|+.+.+|+...++.  +..+.+|...|++++|+|++  
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR  228 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence            332             56778999999998   6 999999999998888887765  77888999999999999998  


Q ss_pred             --CEEEEEeCCCeEEEEECCCCeee-----------------------------------------eeeeeeeccCCCCC
Q 005342          599 --NVLVSSGADAQLCVWDAVGWKKL-----------------------------------------CSKFLHSFQTGLVP  635 (701)
Q Consensus       599 --~~l~s~s~D~~I~vwd~~~g~~~-----------------------------------------~~~~l~~~~~~~~~  635 (701)
                        ++|++|+.||.|++||+..+...                                         ....+..+ .+|. 
T Consensus       229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~-  306 (351)
T 3f3f_A          229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDHN-  306 (351)
T ss_dssp             SSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE-CTTS-
T ss_pred             cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-eccc-
Confidence              89999999999999999875210                                         11233322 2555 


Q ss_pred             CCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342          636 ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       636 ~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                        ..|++++|+|++++|+++ .||.|++||+.+++.++.+.
T Consensus       307 --~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          307 --GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             --SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             --ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence              899999999999999996 79999999999987666554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=1.6e-30  Score=276.35  Aligned_cols=260  Identities=14%  Similarity=0.049  Sum_probs=198.4

Q ss_pred             CcccccccCccce----------eEEEeecCcceeeeEEEEccC----------------CCCCeEEEEeccCCcccccc
Q 005342          307 DKLKFPSMDKSRL----------LSLIKQIMDWWVPYCINVMPN----------------ANNETISLKDFPTVSNLRYA  360 (701)
Q Consensus       307 ~~i~iwd~~~~~~----------~~~l~~h~~~v~~~~l~fspd----------------s~d~~i~lWd~~~~~~~~~~  360 (701)
                      ++|++|++..+..          ...+.+|.+.|.  +++++++                +.|+++++|++.++......
T Consensus        43 N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~--s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~  120 (365)
T 4h5i_A           43 NKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPT--AIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEF  120 (365)
T ss_dssp             EEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCC--EEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEE
T ss_pred             CEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceE--EEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEE
Confidence            4689998875532          124567888888  8888775                56899999998776543221


Q ss_pred             ccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEE--EcCCCcEEEEeccccCCCCceeEeecCC
Q 005342          361 SSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVC--AKSLEKSVNLKLQLINEPSECRTLLLPD  437 (701)
Q Consensus       361 ~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s--~s~d~~v~iw~~~~~~~~~~~~~l~~~~  437 (701)
                               ....           .......+.. +.+++|||||+++++  ++.|++|++||+.    ++++.. .+  
T Consensus       121 ---------~~~~-----------~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~----~~~~~~-~~--  173 (365)
T 4h5i_A          121 ---------LTSV-----------DFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS----DLTEKF-EI--  173 (365)
T ss_dssp             ---------EEEE-----------CSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT----TTEEEE-EE--
T ss_pred             ---------eeee-----------ceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC----CCcEEE-Ee--
Confidence                     0000           0111235556 899999999999875  4578999999998    554433 22  


Q ss_pred             CCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--
Q 005342          438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  515 (701)
Q Consensus       438 ~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--  515 (701)
                       .|...|.+++|+|||+++++++.++ +.+|+.                     .++..........|...|.+++|+  
T Consensus       174 -~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~v~~v~fspd  230 (365)
T 4h5i_A          174 -ETRGEVKDLHFSTDGKVVAYITGSS-LEVIST---------------------VTGSCIARKTDFDKNWSLSKINFIAD  230 (365)
T ss_dssp             -ECSSCCCEEEECTTSSEEEEECSSC-EEEEET---------------------TTCCEEEEECCCCTTEEEEEEEEEET
T ss_pred             -CCCCceEEEEEccCCceEEecccee-EEEEEe---------------------ccCcceeeeecCCCCCCEEEEEEcCC
Confidence             2667899999999999999888654 555533                     333322221334688899999999  


Q ss_pred             CCEEEEEe-CC----eEEEEeCCCCcE----EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee-cC
Q 005342          516 GSHLFSAS-GG----KISIFSLETFQT----LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KG  584 (701)
Q Consensus       516 ~~~l~s~s-dg----~I~iwd~~~~~~----~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l-~~  584 (701)
                      +.++++++ |+    .++.||+.....    ...+.+|...|++++|+||| +||+|+.|++|+|||+++++++..+ .+
T Consensus       231 g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g  310 (365)
T 4h5i_A          231 DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA  310 (365)
T ss_dssp             TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred             CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence            88888888 65    688999876543    45677889999999999999 9999999999999999999999875 78


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      |...|++++|+|||++|||||.|++|+|||+...
T Consensus       311 H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          311 HSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999999999999999753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.98  E-value=3e-30  Score=274.00  Aligned_cols=243  Identities=10%  Similarity=0.024  Sum_probs=203.1

Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      ..|.. |.+++|+|+|++|++|+.|+.|++|++.    .++...+. ...+|...|.+++|+|+++++++++.||.|++|
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~----~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS----GNKWVQVH-ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEE----TTEEEEEE-EEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC----CCcEEeee-eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence            45777 9999999999999999999999999997    55311111 223588999999999999999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE---E-EEe
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT---L-ATF  541 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~---~-~~~  541 (701)
                      |+                     .+++.........|...|.+++|+  ++++++++ ||.|++||+.++..   . ...
T Consensus        80 d~---------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  138 (372)
T 1k8k_C           80 TL---------------------KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK  138 (372)
T ss_dssp             EE---------------------ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             EC---------------------CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence            76                     333322111113688899999999  88999999 99999999988762   3 333


Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC------------------CCCceEEeecCCCCCeEEEEEecCCCEEE
Q 005342          542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCP------------------CTKKTKAKLKGHQNRITCLAYSLSLNVLV  602 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~------------------~~~~~~~~l~~h~~~V~~v~~spdg~~l~  602 (701)
                      .+|...|.+++|+|++ ++++|+.||.|++||+                  .+++.+..+.+|...|.+++|+|++++|+
T Consensus       139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  218 (372)
T 1k8k_C          139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  218 (372)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence            5678999999999999 9999999999999995                  46788899999999999999999999999


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342          603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT  667 (701)
Q Consensus       603 s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~  667 (701)
                      +++.|+.|++||+++++..  ..+.    +|.   ..|++++|+|+++++++|.|+.|++|++.+
T Consensus       219 ~~~~d~~i~i~d~~~~~~~--~~~~----~~~---~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          219 WVSHDSTVCLADADKKMAV--ATLA----SET---LPLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             EEETTTEEEEEEGGGTTEE--EEEE----CSS---CCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             EEeCCCEEEEEECCCCcee--EEEc----cCC---CCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence            9999999999999987533  2222    444   789999999999999999999999999987

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.98  E-value=1.7e-30  Score=267.90  Aligned_cols=240  Identities=11%  Similarity=0.099  Sum_probs=193.9

Q ss_pred             EEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCc--cccccccccCCCCCCCCCCcccccCCCCCCCccccC
Q 005342          321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVS--NLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFND  391 (701)
Q Consensus       321 ~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~  391 (701)
                      ..+.+|.+.|.  +++|+|+       +.|++|+|||+.++.  .+.                             .+.+
T Consensus         3 ~~~~~h~~~V~--~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~-----------------------------~l~g   51 (297)
T 2pm7_B            3 VIANAHNEMIH--DAVMDYYGKRMATCSSDKTIKIFEVEGETHKLID-----------------------------TLTG   51 (297)
T ss_dssp             EECCSCSSCEE--EEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCE-----------------------------EECC
T ss_pred             eeccCCcCceE--EEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEE-----------------------------EEcc
Confidence            45688999999  9999999       889999999997542  222                             2457


Q ss_pred             CCc-eEEEEEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcEE
Q 005342          392 NNQ-SRESTSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHK  466 (701)
Q Consensus       392 h~~-V~~l~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~  466 (701)
                      |.. |++++|+|+  |++|++|+.|++|++||+.    .++...+. ...+|...|.+++|+|+  |.+|++++.||.|+
T Consensus        52 H~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~----~~~~~~~~-~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~  126 (297)
T 2pm7_B           52 HEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE----NGRWSQIA-VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS  126 (297)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS----SSCBCCCE-EECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             ccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC----CCceEEEE-EeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence            888 999999864  8999999999999999997    33211111 12358889999999998  88999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-C--------------CEEEEEe-CCeEEEE
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G--------------SHLFSAS-GGKISIF  530 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~--------------~~l~s~s-dg~I~iw  530 (701)
                      +||+....                  ......  + .+|...|.+++|+ .              ++|++|+ |+.|++|
T Consensus       127 ~wd~~~~~------------------~~~~~~--~-~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lw  185 (297)
T 2pm7_B          127 VVEFKENG------------------TTSPII--I-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW  185 (297)
T ss_dssp             EEEBCSSS------------------CBCCEE--E-ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEE
T ss_pred             EEEecCCC------------------ceeeee--e-ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEE
Confidence            99874321                  000111  1 3688899999998 3              4899999 9999999


Q ss_pred             eCCCCc----EEEEecCCCCCeEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCc---eEEee--cCCCCCeEEEEEecC
Q 005342          531 SLETFQ----TLATFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKK---TKAKL--KGHQNRITCLAYSLS  597 (701)
Q Consensus       531 d~~~~~----~~~~~~~~~~~i~~l~~spd---g-~l~~gs~dg~I~iwd~~~~~---~~~~l--~~h~~~V~~v~~spd  597 (701)
                      |++++.    ....+.+|...|.+++|+|+   + ++++|+.|++|++||+++..   ....+  .+|...|.+++|+|+
T Consensus       186 d~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  265 (297)
T 2pm7_B          186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS  265 (297)
T ss_dssp             EEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS
T ss_pred             EEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCC
Confidence            998765    66788899999999999998   6 99999999999999988743   12233  468889999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCC
Q 005342          598 LNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       598 g~~l~s~s~D~~I~vwd~~~  617 (701)
                      |++||+++.|++|++|+...
T Consensus       266 g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          266 GNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SCCEEEEETTSCEEEEEECT
T ss_pred             CCEEEEEcCCCcEEEEEECC
Confidence            99999999999999999873

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.98  E-value=1e-29  Score=271.83  Aligned_cols=269  Identities=12%  Similarity=0.103  Sum_probs=212.0

Q ss_pred             ccCCCc-eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcE
Q 005342          389 FNDNNQ-SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATH  465 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i  465 (701)
                      +.+|.. |.+++|+|++ ++|++|+.|+.|++||+.    .+.... .+...+|...|.+++|+| +++++++++.||.|
T Consensus        69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYD----VQNKTS-FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETT----STTCEE-EECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCC----Ccccce-eeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            568888 9999999999 999999999999999997    444333 223346899999999999 78999999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      ++||+.                     ++..........|...|.+++|+  +.++++++ |+.|++||+ +++.+..+.
T Consensus       144 ~iwd~~---------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~  201 (383)
T 3ei3_B          144 TLRDFS---------------------GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK  201 (383)
T ss_dssp             EEEETT---------------------SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred             EEEECC---------------------CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec
Confidence            999763                     22222111113456789999999  88999999 999999999 678888999


Q ss_pred             CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC----CceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEC
Q 005342          543 NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT----KKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       543 ~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~----~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~  615 (701)
                      +|...|.+++|+|++  ++++|+.|+.|++||+++    +..+..+ +|...|++++|+| ++++|++++.|+.|++||+
T Consensus       202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~  280 (383)
T 3ei3_B          202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS  280 (383)
T ss_dssp             CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred             cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence            999999999999999  899999999999999998    6667666 6999999999999 9999999999999999999


Q ss_pred             CCCeeeeeeeeee-ccCCCC-------CCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee------eeEEE
Q 005342          616 VGWKKLCSKFLHS-FQTGLV-------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL------ISHIM  681 (701)
Q Consensus       616 ~~g~~~~~~~l~~-~~~~~~-------~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~------i~~~~  681 (701)
                      ++++......-.. ....|.       .....+..++|+|+|++ ..+.|+.|++||+.+++.+.++.+      +..++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~  359 (383)
T 3ei3_B          281 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNK  359 (383)
T ss_dssp             TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEE
T ss_pred             CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEE
Confidence            9875432211110 000111       00133445666666666 223799999999999999999874      66779


Q ss_pred             EEeeE
Q 005342          682 FVQIV  686 (701)
Q Consensus       682 fs~~~  686 (701)
                      |+|+.
T Consensus       360 ~s~~g  364 (383)
T 3ei3_B          360 FSPTG  364 (383)
T ss_dssp             ECTTS
T ss_pred             EecCc
Confidence            98864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.98  E-value=2.1e-30  Score=282.79  Aligned_cols=301  Identities=9%  Similarity=0.088  Sum_probs=218.7

Q ss_pred             ecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC----
Q 005342          325 QIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN----  393 (701)
Q Consensus       325 ~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~----  393 (701)
                      .|.+.|.  +++|+|+       +.|+.|+|||+.++.....          .......        ....+.+|.    
T Consensus        26 ~~~~~V~--~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~----------~~~~~~~--------~~~~~~~h~~~~~   85 (447)
T 3dw8_B           26 AEADIIS--TVEFNHSGELLATGDKGGRVVIFQQEQENKIQS----------HSRGEYN--------VYSTFQSHEPEFD   85 (447)
T ss_dssp             CGGGSEE--EEEECSSSSEEEEEETTSEEEEEEECC-----C----------CCCCCEE--------EEEEEECCCCEEE
T ss_pred             cccCcEE--EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc----------cccccee--------Eeccccccccccc
Confidence            3567899  9999999       7899999999988763111          0000000        011145665    


Q ss_pred             --------c-eEEEEEcCCC--CeEEEEcCCCcEEEEeccccCCCCceeE------------------------------
Q 005342          394 --------Q-SRESTSLPDA--DSAVCAKSLEKSVNLKLQLINEPSECRT------------------------------  432 (701)
Q Consensus       394 --------~-V~~l~~spdg--~~l~s~s~d~~v~iw~~~~~~~~~~~~~------------------------------  432 (701)
                              . |.+++|+|++  ..|++++.|+.|++|++..    +....                              
T Consensus        86 ~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  161 (447)
T 3dw8_B           86 YLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISE----RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD  161 (447)
T ss_dssp             GGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEE----EEEEEECCSCC--------CCCCCSCCCCEEEEEE
T ss_pred             ccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEeccc----ccCCcceecccCccccccCcccccceEeccccchh
Confidence                    6 9999999998  8999999999999999873    11100                              


Q ss_pred             -------eecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCC
Q 005342          433 -------LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP  505 (701)
Q Consensus       433 -------l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~  505 (701)
                             ......+|...|.+++|+|+|++|++| .||.|++||+.....         .+.+++....     .+ .+|
T Consensus       162 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~---------~~~~~~~~~~-----~~-~~~  225 (447)
T 3dw8_B          162 LMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDR---------SFNIVDIKPA-----NM-EEL  225 (447)
T ss_dssp             EEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE---------EEEEEECCCS-----SG-GGC
T ss_pred             eeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc---------eeeeeecccc-----cc-ccc
Confidence                   000124688999999999999999998 899999998742100         0011111100     02 368


Q ss_pred             CCCeEEEEec--C-CEEEEEe-CCeEEEEeCCCCcE----EEEecCCCC------------CeEEEEEcCCC-eEEEEeC
Q 005342          506 KDSISCFALR--G-SHLFSAS-GGKISIFSLETFQT----LATFANPPP------------IATYFILLPQD-LFAFGFD  564 (701)
Q Consensus       506 ~~~v~~l~~s--~-~~l~s~s-dg~I~iwd~~~~~~----~~~~~~~~~------------~i~~l~~spdg-~l~~gs~  564 (701)
                      ...|.+++|+  + +++++++ ||.|++||+++++.    +..+.+|..            .|.+++|+|+| ++++++.
T Consensus       226 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          226 TEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             CCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             CcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            8999999999  6 8999999 99999999999886    788888775            89999999999 9999999


Q ss_pred             CCcEEEEeCCC-CceEEeecCCCCC---------------eEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          565 DSSILVHCPCT-KKTKAKLKGHQNR---------------ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       565 dg~I~iwd~~~-~~~~~~l~~h~~~---------------V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                       +.|++||+++ ++.+..+.+|...               +..++|+|++++|++|+.||.|++||+.+++......-..
T Consensus       306 -~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  384 (447)
T 3dw8_B          306 -LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRE  384 (447)
T ss_dssp             -SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCST
T ss_pred             -CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccc
Confidence             9999999997 8888899888642               3348999999999999999999999999986442111000


Q ss_pred             ------ccC-------C----------CCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342          629 ------FQT-------G----------LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP  666 (701)
Q Consensus       629 ------~~~-------~----------~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~  666 (701)
                            ...       +          .......|..++|+|++++||++..+.+++|.-+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~  445 (447)
T 3dw8_B          385 NNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK  445 (447)
T ss_dssp             TCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred             ccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence                  000       0          0001257899999999999999877779999753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=2.7e-30  Score=281.52  Aligned_cols=287  Identities=15%  Similarity=0.189  Sum_probs=220.8

Q ss_pred             eecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEE
Q 005342          324 KQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRE  397 (701)
Q Consensus       324 ~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~  397 (701)
                      .+|...|.  |+.|..+     +.|++|++||+.+++....+                             .+|.. |.+
T Consensus       130 ~~~~~~v~--~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~-----------------------------~~h~~~v~~  178 (435)
T 1p22_A          130 SETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL-----------------------------TGHTGSVLC  178 (435)
T ss_dssp             CSSCCCEE--EEECCSSEEEEEESSSCEEEEESSSCCEEEEE-----------------------------CCCSSCEEE
T ss_pred             cCCCCcEE--EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEE-----------------------------cCCCCcEEE
Confidence            45666788  8888666     88999999999988877662                             36677 989


Q ss_pred             EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342          398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  477 (701)
Q Consensus       398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  477 (701)
                      ++|  ++++|++|+.||.|++||+.    ++++..   ...+|...|.+++|+  +..+++|+.||.|++||+.+...  
T Consensus       179 l~~--~~~~l~sg~~dg~i~vwd~~----~~~~~~---~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~--  245 (435)
T 1p22_A          179 LQY--DERVIITGSSDSTVRVWDVN----TGEMLN---TLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD--  245 (435)
T ss_dssp             EEC--CSSEEEEEETTSCEEEEESS----SCCEEE---EECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSC--
T ss_pred             EEE--CCCEEEEEcCCCeEEEEECC----CCcEEE---EEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCC--
Confidence            988  78899999999999999998    555444   334688999999997  45899999999999998743210  


Q ss_pred             cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCC
Q 005342          478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ  556 (701)
Q Consensus       478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spd  556 (701)
                                      .....  ...+|...|.+++++++++++|+ ||.|++||+++++.+..+.+|...|.+++++  
T Consensus       246 ----------------~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--  305 (435)
T 1p22_A          246 ----------------ITLRR--VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--  305 (435)
T ss_dssp             ----------------CEEEE--EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--
T ss_pred             ----------------ceeee--EecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--
Confidence                            01111  12478899999999989999999 9999999999999999999999999999994  


Q ss_pred             C-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee----eeeeeeccC
Q 005342          557 D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC----SKFLHSFQT  631 (701)
Q Consensus       557 g-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~----~~~l~~~~~  631 (701)
                      + .+++|+.||.|++||+++++.+..+.+|...|.+++|  ++.+|++|+.||.|++||+.++....    ...+..+ .
T Consensus       306 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~  382 (435)
T 1p22_A          306 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-V  382 (435)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-C
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-c
Confidence            5 9999999999999999999999999999999999998  78899999999999999997643100    0023322 2


Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEE
Q 005342          632 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMF  682 (701)
Q Consensus       632 ~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~f  682 (701)
                      +|.   ..|++++|  ++++|+++ .||+|++||+.++......+.   ..+++|
T Consensus       383 ~h~---~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  432 (435)
T 1p22_A          383 EHS---GRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTY  432 (435)
T ss_dssp             CCS---SCCCCEEE--CSSCEEECCSSSEEEEEC---------------------
T ss_pred             CCC---CCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceee
Confidence            555   88999999  77888886 799999999988766554443   444444

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=6e-30  Score=277.47  Aligned_cols=253  Identities=14%  Similarity=0.182  Sum_probs=208.6

Q ss_pred             CcccccccCccceeEEEe--ecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccc
Q 005342          307 DKLKFPSMDKSRLLSLIK--QIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDA  377 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~--~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (701)
                      ++|++||..+|++...+.  +|...|.  +++|+|+       +.|++|+|||+.+++++..          +       
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~--sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~----------~-------  185 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQPGEYIS--SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN----------M-------  185 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEE--EEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----------E-------
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCcEE--EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE----------E-------
Confidence            899999999999998776  5667788  9999999       8999999999999988776          2       


Q ss_pred             ccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342          378 SSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL  456 (701)
Q Consensus       378 s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l  456 (701)
                                  .+|.. |.++++  ++..+++|+.|+.+++|+...    ......  ...+|...+..+.|+|+|+++
T Consensus       186 ------------~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~----~~~~~~--~~~~h~~~~~~~~~~~~g~~l  245 (420)
T 4gga_A          186 ------------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRV----AEHHVA--TLSGHSQEVCGLRWAPDGRHL  245 (420)
T ss_dssp             ------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS----SSCEEE--EEECCSSCEEEEEECTTSSEE
T ss_pred             ------------eCCCCceEEEee--CCCEEEEEeCCCceeEeeecc----cceeeE--EecccccceeeeeecCCCCee
Confidence                        35566 777666  567999999999999999873    221111  223588999999999999999


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEE--e-CCeEEEE
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSA--S-GGKISIF  530 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~--s-dg~I~iw  530 (701)
                      ++++.||.+++|+...+..                . ...+.  ....|...|.+++|+   +..++++  + |+.|++|
T Consensus       246 ~s~~~D~~v~i~~~~~~~~----------------~-~~~~~--~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw  306 (420)
T 4gga_A          246 ASGGNDNLVNVWPSAPGEG----------------G-WVPLQ--TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW  306 (420)
T ss_dssp             EEEETTSCEEEEESSCCSS----------------C-SCCSE--EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred             eeeeccccceEEeeccccc----------------c-ceeee--eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence            9999999999998744321                0 00111  113688899999998   5566654  4 8999999


Q ss_pred             eCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe--CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 005342          531 SLETFQTLATFANPPPIATYFILLPQD-LFAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD  607 (701)
Q Consensus       531 d~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D  607 (701)
                      |+.+++....+.. ...+.++.|+|++ .+++++  .|+.|++||+.+++.+.++.||.+.|++++|+|||++|||||.|
T Consensus       307 d~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D  385 (420)
T 4gga_A          307 NVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD  385 (420)
T ss_dssp             ETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             eCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            9999999988874 4578999999999 666554  79999999999999999999999999999999999999999999


Q ss_pred             CeEEEEECCCC
Q 005342          608 AQLCVWDAVGW  618 (701)
Q Consensus       608 ~~I~vwd~~~g  618 (701)
                      ++|+|||+...
T Consensus       386 ~tvriWdv~~~  396 (420)
T 4gga_A          386 ETLRLWRCFEL  396 (420)
T ss_dssp             TEEEEECCSCS
T ss_pred             CeEEEEECCCC
Confidence            99999999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=5.3e-30  Score=276.08  Aligned_cols=280  Identities=7%  Similarity=0.068  Sum_probs=218.5

Q ss_pred             EEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcC-C
Q 005342          334 CINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLP-D  403 (701)
Q Consensus       334 ~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~sp-d  403 (701)
                      +++++|+        +.||.|+||++........                         ....+.+|.. |.+++|+| +
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-------------------------~~~~~~~h~~~V~~~~~~p~~   93 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-------------------------NVPLVCGHTAPVLDIAWCPHN   93 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-------------------------TCCCBCCCSSCEEEEEECTTC
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-------------------------CCceEecCCCCEEEEEeCCCC
Confidence            5777777        6799999999965432211                         1223568888 99999999 9


Q ss_pred             CCeEEEEcCCCcEEEEeccccCCCC---ceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcEEEEecCCCCccccc
Q 005342          404 ADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEE  479 (701)
Q Consensus       404 g~~l~s~s~d~~v~iw~~~~~~~~~---~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~g~  479 (701)
                      +++|++|+.||.|++|++.+.....   ....   ...+|...|.+++|+|++ ..+++++.||.|++||+         
T Consensus        94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~---------  161 (402)
T 2aq5_A           94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVI---TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV---------  161 (402)
T ss_dssp             TTEEEEEETTSEEEEEECCTTCCSSCBCSCSE---EEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET---------
T ss_pred             CCEEEEEeCCCeEEEEEccCCCCccccCCceE---EecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC---------
Confidence            9999999999999999997421110   1111   123588999999999998 69999999999999965         


Q ss_pred             cccceeeEEeeCCCCeEEeeccc-CCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe-cCCCCC-eEEEEE
Q 005342          480 ENVNMESQLYQPSSKLVMTNDIA-ADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF-ANPPPI-ATYFIL  553 (701)
Q Consensus       480 ~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~-~~~~~~-i~~l~~  553 (701)
                                  .+++.... +. ..|...|.+++|+  +++|++++ ||.|++||+++++.+..+ .+|... +.+++|
T Consensus       162 ------------~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (402)
T 2aq5_A          162 ------------GTGAAVLT-LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF  228 (402)
T ss_dssp             ------------TTTEEEEE-ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred             ------------CCCCccEE-EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence                        45554432 31 4688999999999  88999999 999999999999999888 677665 899999


Q ss_pred             cCCC-eEEEE---eCCCcEEEEeCCCCce-EEeec-CCCCCeEEEEEecCCCEEEE-EeCCCeEEEEECCCCeeeeeeee
Q 005342          554 LPQD-LFAFG---FDDSSILVHCPCTKKT-KAKLK-GHQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFL  626 (701)
Q Consensus       554 spdg-~l~~g---s~dg~I~iwd~~~~~~-~~~l~-~h~~~V~~v~~spdg~~l~s-~s~D~~I~vwd~~~g~~~~~~~l  626 (701)
                      +|++ ++++|   +.|+.|++||+++++. +.... .|...+.+++|+|++++|++ |+.|+.|++||+.+++.. ...+
T Consensus       229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~-~~~l  307 (402)
T 2aq5_A          229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF-LHYL  307 (402)
T ss_dssp             CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC-EEEE
T ss_pred             cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc-eEee
Confidence            9999 99999   7999999999998654 33332 47778999999999998864 557999999999987531 1223


Q ss_pred             eeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce
Q 005342          627 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH  670 (701)
Q Consensus       627 ~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~  670 (701)
                      ....  +.   ..|.+++|+|++.++++ .++.+++|++.++++
T Consensus       308 ~~~~--~~---~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          308 SMFS--SK---ESQRGMGYMPKRGLEVN-KCEIARFYKLHERKC  345 (402)
T ss_dssp             EEEC--CS---SCCSEEEECCGGGSCGG-GTEEEEEEEEETTEE
T ss_pred             cccc--cC---CcccceEEeccccccee-cceeEEEEEcCCCcE
Confidence            3122  22   88999999999998765 456899999988754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=2.4e-29  Score=263.88  Aligned_cols=280  Identities=13%  Similarity=0.102  Sum_probs=220.0

Q ss_pred             EeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-
Q 005342          323 IKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-  394 (701)
Q Consensus       323 l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-  394 (701)
                      ..+|.+.|.  +++|+|+       +.|++|++||+.++.....                          ...+.+|.. 
T Consensus         7 ~~~h~~~v~--~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~--------------------------~~~~~~~~~~   58 (342)
T 1yfq_A            7 EQAPKDYIS--DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD--------------------------LLQSLRYKHP   58 (342)
T ss_dssp             SSCCSSCEE--EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE--------------------------EEEEEECSSC
T ss_pred             ccCCCCcEE--EEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc--------------------------ceeeeecCCc
Confidence            467999999  9999999       7899999999988762111                          011236777 


Q ss_pred             eEEEEEcCCCC-eEEEEcCCCcEEEEec-cccCCCCceeEeecCCCC--CCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342          395 SRESTSLPDAD-SAVCAKSLEKSVNLKL-QLINEPSECRTLLLPDNS--FGGRVVRLIYSHSGDFLVALTQTATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~-~l~s~s~d~~v~iw~~-~~~~~~~~~~~l~~~~~~--~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  470 (701)
                      |.+++|+|+++ +|++|+.||.|++|++ .    .++...    ..+  |...|.+++|+| +..+++++.||.|++||+
T Consensus        59 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~----~~~~~~----~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~  129 (342)
T 1yfq_A           59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIG----SPSFQA----LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDP  129 (342)
T ss_dssp             EEEEEEEESSSEEEEEEETTSCEEEECSSS----SSSEEE----CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECH
T ss_pred             eEEEEECCCCCcEEEEEcCCCeEEEEEecc----CCceEe----ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcc
Confidence            99999999999 9999999999999999 7    454433    235  889999999999 999999999999999987


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCC-Cc--EEEEecCCCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET-FQ--TLATFANPPP  546 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~-~~--~~~~~~~~~~  546 (701)
                      .+.....            ....++.+.. +  .|...|.+++|+++.+++++ |+.|++||+++ +.  .......+..
T Consensus       130 ~~~~~~~------------~~~~~~~~~~-~--~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  194 (342)
T 1yfq_A          130 RNYGDGV------------IAVKNLNSNN-T--KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY  194 (342)
T ss_dssp             HHHTTBC------------EEEEESCSSS-S--SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSS
T ss_pred             ccccccc------------ccccCCeeeE-E--eeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCC
Confidence            3200000            0000222211 2  37789999999944488888 99999999988 54  3334456788


Q ss_pred             CeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCC------ceEEeecCCCC---------CeEEEEEecCCCEEEEEeCCCe
Q 005342          547 IATYFILLP-QD-LFAFGFDDSSILVHCPCTK------KTKAKLKGHQN---------RITCLAYSLSLNVLVSSGADAQ  609 (701)
Q Consensus       547 ~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~------~~~~~l~~h~~---------~V~~v~~spdg~~l~s~s~D~~  609 (701)
                      .+.+++|+| ++ ++++|+.||.|++||++..      +....+.+|..         .|++++|+|++++|++++.||.
T Consensus       195 ~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  274 (342)
T 1yfq_A          195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce
Confidence            999999999 99 9999999999999999887      77888888865         9999999999999999999999


Q ss_pred             EEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCe-EEEEE
Q 005342          610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ-IDVYE  664 (701)
Q Consensus       610 I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~-I~iwd  664 (701)
                      |++||+.+++.     +..+..+|.   ..|++++  |++++|+++ .||+ .+.|.
T Consensus       275 i~vwd~~~~~~-----~~~~~~~h~---~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          275 ISCWNLQTRKK-----IKNFAKFNE---DSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEETTTTEE-----EEECCCCSS---SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             EEEEcCccHhH-----hhhhhcccC---CCceEec--CCCCeEEEEecCCccccccc
Confidence            99999999753     232433335   8899999  999999985 8998 44444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=268.29  Aligned_cols=288  Identities=12%  Similarity=0.112  Sum_probs=222.5

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC----------CCCCeEEEEeccC-CccccccccccCCCCCCCCCCc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN----------ANNETISLKDFPT-VSNLRYASSILTDKPNQEGRPL  375 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd----------s~d~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~  375 (701)
                      +....|+..+.+.+..+.+|.+.|.  +++|+|+          +.|++|++||+.+ +..+..                
T Consensus        19 ~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~----------------   80 (368)
T 3mmy_A           19 GSATTDNHNPMKDIEVTSSPDDSIG--CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK----------------   80 (368)
T ss_dssp             ----CCSSCTTCCEECSSCCSSCEE--EEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE----------------
T ss_pred             EEeccCCCCCcceeEeccCCCCceE--EEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE----------------
Confidence            3445677778888889999999999  9999995          7799999999987 443322                


Q ss_pred             ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEE--ecC
Q 005342          376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY--SHS  452 (701)
Q Consensus       376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~--spd  452 (701)
                                  .+.+|.. |.+++|+|++++|++|+.||.|++||+.    .+++..+.    .|...|.+++|  +|+
T Consensus        81 ------------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~----~~~~~~~~----~~~~~v~~~~~~~~~~  140 (368)
T 3mmy_A           81 ------------AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS----SNQAIQIA----QHDAPVKTIHWIKAPN  140 (368)
T ss_dssp             ------------EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TTEEEEEE----ECSSCEEEEEEEECSS
T ss_pred             ------------EeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC----CCCceeec----cccCceEEEEEEeCCC
Confidence                        2357788 9999999999999999999999999998    55554433    38899999999  899


Q ss_pred             CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEe
Q 005342          453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS  531 (701)
Q Consensus       453 g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd  531 (701)
                      ++++++++.||.|++||+.                     +++.+.. +.  ....+.++.+.+..+++++ ++.+.+||
T Consensus       141 ~~~l~~~~~dg~i~vwd~~---------------------~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~  196 (368)
T 3mmy_A          141 YSCVMTGSWDKTLKFWDTR---------------------SSNPMMV-LQ--LPERCYCADVIYPMAVVATAERGLIVYQ  196 (368)
T ss_dssp             CEEEEEEETTSEEEEECSS---------------------CSSCSEE-EE--CSSCEEEEEEETTEEEEEEGGGCEEEEE
T ss_pred             CCEEEEccCCCcEEEEECC---------------------CCcEEEE-Ee--cCCCceEEEecCCeeEEEeCCCcEEEEE
Confidence            9999999999999999763                     3332221 11  2346667777766667776 99999999


Q ss_pred             CCCCcEEEEec--CCCCCeEEEEEcCCC-e----EEEEeCCCcEEEEeCCCC---ceEEeecCCCC------------Ce
Q 005342          532 LETFQTLATFA--NPPPIATYFILLPQD-L----FAFGFDDSSILVHCPCTK---KTKAKLKGHQN------------RI  589 (701)
Q Consensus       532 ~~~~~~~~~~~--~~~~~i~~l~~spdg-~----l~~gs~dg~I~iwd~~~~---~~~~~l~~h~~------------~V  589 (701)
                      ++.........  .+...+.++++.+++ .    +++|+.||.|++||++..   ..+..+.+|..            .|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  276 (368)
T 3mmy_A          197 LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAV  276 (368)
T ss_dssp             CSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCE
T ss_pred             eccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccce
Confidence            98765433222  234556677776655 3    999999999999999987   56777788776            79


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          590 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       590 ~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      ++++|+|++++|++|+.||.|++||+.+++..     ..+. +|.   ..|++++|+|+|++|+++ .|+..+.|++
T Consensus       277 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~-~~~---~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          277 NGIAFHPVHGTLATVGSDGRFSFWDKDARTKL-----KTSE-QLD---QPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EEEEECTTTCCEEEEETTSCEEEEETTTTEEE-----EECC-CCS---SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             EEEEEecCCCEEEEEccCCeEEEEECCCCcEE-----EEec-CCC---CCceEEEECCCCCeEEEEecccccccccc
Confidence            99999999999999999999999999997533     2232 554   899999999999999985 6665444443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.2e-30  Score=278.24  Aligned_cols=245  Identities=10%  Similarity=0.016  Sum_probs=193.1

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      .|.. |++++|+|+|++|++|+.|+.|++|++.    ++.... .....+|...|.+++|+|++++|++++.||.|++||
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~----~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQD----GNGWKH-ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEE----TTEEEE-CCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEcc----CCceEE-EEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            3445 9999999999999999999999999997    442111 114456899999999999999999999999999997


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc---EEEEecC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---TLATFAN  543 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~---~~~~~~~  543 (701)
                      +.++.                  ....... + .+|...|.+++|+  +++|++++ |+.|++||+++++   ....+.+
T Consensus        84 ~~~~~------------------~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  143 (377)
T 3dwl_C           84 KRPDG------------------TWKQTLV-L-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR  143 (377)
T ss_dssp             -----------------------CCCCEEE-C-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred             cCCCC------------------ceeeeeE-e-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec
Confidence            73321                  0001111 2 4688999999999  88999999 9999999999887   4677777


Q ss_pred             -CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC------------------CCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342          544 -PPPIATYFILLPQD-LFAFGFDDSSILVHCPC------------------TKKTKAKLKGHQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       544 -~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~------------------~~~~~~~l~~h~~~V~~v~~spdg~~l~s  603 (701)
                       |...|++++|+|++ ++++|+.|+.|++||+.                  .++.+..+ +|.+.|++++|+|++++|++
T Consensus       144 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~  222 (377)
T 3dwl_C          144 PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY  222 (377)
T ss_dssp             SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence             89999999999999 99999999999999985                  35667777 89999999999999999999


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342          604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP  666 (701)
Q Consensus       604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~  666 (701)
                      ++.|++|++||+.+++... ..+..+. +|.   ..|++++|+|+|++|++|.++.+.+|+..
T Consensus       223 ~~~d~~i~iwd~~~~~~~~-~~~~~~~-~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          223 AGHDSSVTIAYPSAPEQPP-RALITVK-LSQ---LPLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             EETTTEEC-CEECSTTSCE-EECCCEE-CSS---SCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             EeCCCcEEEEECCCCCCcc-eeeEeec-CCC---CceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence            9999999999999975311 1122222 554   88999999999999999876666688775

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=1.1e-29  Score=272.38  Aligned_cols=267  Identities=12%  Similarity=0.145  Sum_probs=217.0

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC---ceeEeecCCCCCCCCEEEEEEecC----C---CEE
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHS----G---DFL  456 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~---~~~~l~~~~~~~~~~v~~l~~spd----g---~~l  456 (701)
                      .+.+|.. |.+++|+|  ++|++|+.||.|++|++.......   ....+    .+|...|.+++|+|+    |   ++|
T Consensus        11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH----FVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE----ECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE----ecCCCcEEEEEEecccccCCccccEE
Confidence            3678998 99999999  799999999999999998321000   12222    258899999999999    9   999


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCC-----CCCeEEEEec------CCE-EEEEe-
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCFALR------GSH-LFSAS-  523 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~v~~l~~s------~~~-l~s~s-  523 (701)
                      ++++.||.|++||+.+...                ........ + ..|     ...|.+++|+      +++ +++++ 
T Consensus        85 ~s~~~dg~i~iw~~~~~~~----------------~~~~~~~~-~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  146 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDE----------------TKKVIFEK-L-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV  146 (397)
T ss_dssp             EEEETTSCEEEEEEEECTT----------------TCCEEEEE-E-CCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred             EEEcCCCCEEEEEccCCcc----------------ccccccee-e-cccccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence            9999999999998743311                00001211 2 245     5889999997      778 99998 


Q ss_pred             CCeEEEEeCCC------CcEEE-----Ee-------cCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC-
Q 005342          524 GGKISIFSLET------FQTLA-----TF-------ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG-  584 (701)
Q Consensus       524 dg~I~iwd~~~------~~~~~-----~~-------~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~-  584 (701)
                      ||.|++||+.+      ++.+.     .+       ..|...|.+++|+|++.+++|+.||.|++||+++++.+..+.+ 
T Consensus       147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  226 (397)
T 1sq9_A          147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQ  226 (397)
T ss_dssp             TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEecc
Confidence            99999999988      66665     66       4478899999999998888999999999999999999999998 


Q ss_pred             --C---CCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccCC------------CCCCCCCeEEEE
Q 005342          585 --H---QNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTG------------LVPETTIVNHIQ  644 (701)
Q Consensus       585 --h---~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~------------~~~~~~~v~~v~  644 (701)
                        |   ...|.+++|+|++++|++++.|   +.|++||+.+++...  .   +...            |.   ..|.+++
T Consensus       227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~--~---~~~~~~~~~~~~~~~~~~---~~v~~~~  298 (397)
T 1sq9_A          227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG--S---LSVPTHSSQASLGEFAHS---SWVMSLS  298 (397)
T ss_dssp             C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE--E---ECBC--------CCBSBS---SCEEEEE
T ss_pred             ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc--e---eccCcccccccccccccC---CcEEEEE
Confidence              9   9999999999999999999999   999999999875332  2   2220            44   8999999


Q ss_pred             EcCCCCEEEEE-ecCeEEEEECCCCceeeeee-----------------------e--eeEEEEEeeE
Q 005342          645 FHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL-----------------------L--ISHIMFVQIV  686 (701)
Q Consensus       645 ~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~-----------------------~--i~~~~fs~~~  686 (701)
                      |+|++++|+++ .||.|++||+.+++.+..+.                       .  |++++|+|+.
T Consensus       299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            99999999996 79999999999999998887                       5  9999999874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=6.3e-30  Score=278.92  Aligned_cols=271  Identities=10%  Similarity=0.072  Sum_probs=197.7

Q ss_pred             CCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCC-----CCceeEeecCCCCCC------------CCEEEEEEecCC
Q 005342          392 NNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINE-----PSECRTLLLPDNSFG------------GRVVRLIYSHSG  453 (701)
Q Consensus       392 h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~-----~~~~~~l~~~~~~~~------------~~v~~l~~spdg  453 (701)
                      |.+ |.+++|+|+|++||+|+.||.|++|++.....     .+. ..+.....+|.            ..|.+++|+|++
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE-YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCC-EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc-eeEecccccccccccccccccccCceEEEEEcCCC
Confidence            455 99999999999999999999999999973221     011 11111223576            889999999998


Q ss_pred             --CEEEEEECCCcEEEEecCCCCcc---------cccc-----cccee-----eEEeeCCCCeEEeecccCCCCCCeEEE
Q 005342          454 --DFLVALTQTATHKLWKWQSNKQS---------LEEE-----NVNME-----SQLYQPSSKLVMTNDIAADPKDSISCF  512 (701)
Q Consensus       454 --~~l~s~s~dg~i~vwd~~~~~~~---------~g~~-----~~~~~-----i~~~d~~~~~~~~~~~~~~~~~~v~~l  512 (701)
                        ..+++++.||.|++||+......         .|..     .....     ..-+.... ... ..+..+|...|.++
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA-SPR-RIFANAHTYHINSI  183 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE-EEE-EEECSCCSSCCCEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec-cce-EEeccCCCcceEEE
Confidence              79999999999999998653220         0000     00000     00000000 000 01235799999999


Q ss_pred             Eec--CCEEEEEeCCeEEEEeCCC-CcEEE-------EecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce--
Q 005342          513 ALR--GSHLFSASGGKISIFSLET-FQTLA-------TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT--  578 (701)
Q Consensus       513 ~~s--~~~l~s~sdg~I~iwd~~~-~~~~~-------~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~--  578 (701)
                      +|+  ++++++|.|+.|++||+++ ++...       .+.+|...|++++|+|++  ++++|+.||.|++||+++++.  
T Consensus       184 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          184 SINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             EECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            999  8889988799999999984 44444       255788999999999997  999999999999999999887  


Q ss_pred             --EEeecCCCC------------CeEEEEEecCCCEEEEEeCCCeEEEEECCC-CeeeeeeeeeeccCCCCCCCC-----
Q 005342          579 --KAKLKGHQN------------RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETT-----  638 (701)
Q Consensus       579 --~~~l~~h~~------------~V~~v~~spdg~~l~s~s~D~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~~~-----  638 (701)
                        +..+.+|..            .|.+++|+|+|++|++++. +.|++||+++ ++..  ..+.    +|.....     
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~--~~~~----~~~~~~~~l~~~  336 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV--ETYQ----VHEYLRSKLCSL  336 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS--CCEE----SCGGGTTTHHHH
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc--ceee----cccccccccccc
Confidence              788888876            8999999999999999999 9999999997 5422  2222    3320000     


Q ss_pred             -------CeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342          639 -------IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       639 -------~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~  672 (701)
                             .+..++|+|++++|++| .||.|++||+.+++.+.
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence                   13459999999999997 89999999999988754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-29  Score=274.50  Aligned_cols=274  Identities=13%  Similarity=0.115  Sum_probs=206.7

Q ss_pred             cCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342          390 NDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  467 (701)
Q Consensus       390 ~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  467 (701)
                      .+|.. |++++|+| ++++|++|+.||.|++||+..... +......... .|...|.+++|+|++++|++|+.||.|++
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~v  137 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV-GEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIV  137 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT-TCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECccccc-Ccccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence            57877 99999999 999999999999999999974111 1111100011 37899999999999999999999999999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccC-CCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~~~~~  541 (701)
                      ||+....  .|....     .....  .+....+.. ++...+.++.+.    +.++++++ ||.|++||+++++.+..+
T Consensus       138 wd~~~~~--~~~~~~-----~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  208 (437)
T 3gre_A          138 LKVNHYQ--QESEVK-----FLNCE--CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII  208 (437)
T ss_dssp             EEEEEEE--ETTEEE-----EEEEE--EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEecccc--CCceee-----ccccc--eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence            9884210  011000     00000  000000111 156678888744    77899999 999999999999999999


Q ss_pred             cC--CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEec----CCCEEEEEeCCCeEEEE
Q 005342          542 AN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL----SLNVLVSSGADAQLCVW  613 (701)
Q Consensus       542 ~~--~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~sp----dg~~l~s~s~D~~I~vw  613 (701)
                      .+  |...|++++|+|++ ++++|+.||.|++||+++++.+..+. +|...|++++|+|    ++.+|++|+.|++|++|
T Consensus       209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw  288 (437)
T 3gre_A          209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW  288 (437)
T ss_dssp             ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred             ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence            88  78999999999999 99999999999999999999999886 6888999996665    67799999999999999


Q ss_pred             ECCCCeeeeeeeeee-------cc-----------CCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeee
Q 005342          614 DAVGWKKLCSKFLHS-------FQ-----------TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       614 d~~~g~~~~~~~l~~-------~~-----------~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l  674 (701)
                      |+.+++......-..       +.           .+ ..+...|++++|+ ++++|++| .|+.|++||+.+++....+
T Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          289 NFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG-IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             ETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC-CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred             EcCCCcEEEEEEcCCCCCccceecccccccccceecc-cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence            999986433211000       00           01 0023779999999 77889987 7999999999999988777


Q ss_pred             ee
Q 005342          675 LL  676 (701)
Q Consensus       675 ~~  676 (701)
                      .+
T Consensus       367 ~~  368 (437)
T 3gre_A          367 IS  368 (437)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=2.1e-29  Score=266.36  Aligned_cols=265  Identities=12%  Similarity=0.085  Sum_probs=211.8

Q ss_pred             ccCCCc-eEEEEEcCC----CCeEEEEcCCCcEEEEeccccCCCCce-eEee-cCCCCCCCCEEEEEEecC----CCEEE
Q 005342          389 FNDNNQ-SRESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSEC-RTLL-LPDNSFGGRVVRLIYSHS----GDFLV  457 (701)
Q Consensus       389 l~~h~~-V~~l~~spd----g~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~-~~~~~~~~~v~~l~~spd----g~~l~  457 (701)
                      ..+|.. |.+++|+|+    ...+++++.++.|++|++.+    +.. ..+. .....|...|.+++|+|+    |.+++
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   89 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS----QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLA   89 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG----GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC----CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence            457888 999999994    45666677778999999973    322 2222 222236788999999999    67999


Q ss_pred             EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCC
Q 005342          458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLE  533 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~  533 (701)
                      +|+.||.|++||+                     .+++.+.. + .+|...|.+++|+   ++++++++ ||.|++||++
T Consensus        90 ~~~~dg~i~v~d~---------------------~~~~~~~~-~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           90 VAGSRGIIRIINP---------------------ITMQCIKH-Y-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             EEETTCEEEEECT---------------------TTCCEEEE-E-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             EecCCCEEEEEEc---------------------hhceEeee-e-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence            9999999999965                     44554432 2 3688999999998   78899999 9999999999


Q ss_pred             CCcEEEEe---cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-------------------------
Q 005342          534 TFQTLATF---ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-------------------------  584 (701)
Q Consensus       534 ~~~~~~~~---~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-------------------------  584 (701)
                      +++.+..+   .+|...|.+++|+|++ ++++|+.||.|++||+++++....+..                         
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST  226 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence            99998888   6799999999999999 999999999999999998766544443                         


Q ss_pred             ---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee---------eeeeeeeccCCCCCCCCCeEEEEEcCC--CC
Q 005342          585 ---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL---------CSKFLHSFQTGLVPETTIVNHIQFHPD--QI  650 (701)
Q Consensus       585 ---h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~---------~~~~l~~~~~~~~~~~~~v~~v~~spd--g~  650 (701)
                         |...|.+++|+  ++++++++.|+.|++||+.++...         ....+..+. +|.   ..|++++|+|+  ++
T Consensus       227 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~s~~~~~~  300 (366)
T 3k26_A          227 RDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQ---CDIWYMRFSMDFWQK  300 (366)
T ss_dssp             CSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSS---CCSSCCCCEECTTSS
T ss_pred             ccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-ccC---CcEEEEEEcCCCCCc
Confidence               99999999998  779999999999999999886430         012233222 444   78999999999  99


Q ss_pred             EEEEE-ecCeEEEEECCCCceee----eeee------eeEEEEEeeE
Q 005342          651 HLLSI-HEGQIDVYEAPTLNHTS----QVLL------ISHIMFVQIV  686 (701)
Q Consensus       651 ~l~sg-~Dg~I~iwd~~~g~~~~----~l~~------i~~~~fs~~~  686 (701)
                      +|++| .||.|++||+.+++...    .+.+      |++++|+|+.
T Consensus       301 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  347 (366)
T 3k26_A          301 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS  347 (366)
T ss_dssp             EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred             EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence            99997 79999999999886433    4442      9999999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=8.4e-30  Score=265.22  Aligned_cols=242  Identities=9%  Similarity=0.080  Sum_probs=187.9

Q ss_pred             EEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc
Q 005342          322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ  394 (701)
Q Consensus       322 ~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~  394 (701)
                      .+.+|.+.|.  +++|+|+       +.|++|+|||+.++.....                           ..+.+|..
T Consensus         8 ~~~~H~~~V~--~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~---------------------------~~l~gH~~   58 (316)
T 3bg1_A            8 VDTSHEDMIH--DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI---------------------------ADLRGHEG   58 (316)
T ss_dssp             ------CCEE--EEEECGGGCEEEEEETTTEEEEEEEETTEEEEE---------------------------EEEECCSS
T ss_pred             ecccccCeEE--EeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE---------------------------EEEcCCCc
Confidence            4578999999  9999998       8899999999987753211                           12457888


Q ss_pred             -eEEEEEcC--CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcEEEEe
Q 005342          395 -SRESTSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWK  469 (701)
Q Consensus       395 -V~~l~~sp--dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~vwd  469 (701)
                       |++++|+|  ++++|++|+.|++|++||+.    .+...... ...+|...|.+++|+|+  |.+|++|+.||.|++||
T Consensus        59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~----~~~~~~~~-~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd  133 (316)
T 3bg1_A           59 PVWQVAWAHPMYGNILASCSYDRKVIIWREE----NGTWEKSH-EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT  133 (316)
T ss_dssp             CEEEEEECCGGGSSCEEEEETTSCEEEECCS----SSCCCEEE-EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEE
T ss_pred             cEEEEEeCCCCCCCEEEEEECCCEEEEEECC----CCcceEEE-EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEe
Confidence             99999986  48999999999999999997    44221111 23468899999999998  78999999999999998


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-C------------------CEEEEEe-CCeEEE
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G------------------SHLFSAS-GGKISI  529 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~------------------~~l~s~s-dg~I~i  529 (701)
                      +....                   ...... ...+|...|.+++|+ .                  .+|++|+ |+.|++
T Consensus       134 ~~~~~-------------------~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~l  193 (316)
T 3bg1_A          134 YTGEG-------------------QWEVKK-INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL  193 (316)
T ss_dssp             ECSSS-------------------CEEECC-BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCE
T ss_pred             cCCCC-------------------Ccceee-eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEE
Confidence            74321                   000001 123577777777776 2                  5789999 999999


Q ss_pred             EeCCCC---cEEEEecCCCCCeEEEEEcCCC-----eEEEEeCCCcEEEEeCCCCc----eEEeecCCCCCeEEEEEecC
Q 005342          530 FSLETF---QTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLS  597 (701)
Q Consensus       530 wd~~~~---~~~~~~~~~~~~i~~l~~spdg-----~l~~gs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~v~~spd  597 (701)
                      ||++++   +.+..+.+|...|.+++|+|++     +|++|+.|++|++||+.+..    ....+.+|...|.+++|+|+
T Consensus       194 Wd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  273 (316)
T 3bg1_A          194 WKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT  273 (316)
T ss_dssp             EEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT
T ss_pred             EEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC
Confidence            999755   4677788999999999999973     79999999999999987631    22345678899999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCC
Q 005342          598 LNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       598 g~~l~s~s~D~~I~vwd~~~  617 (701)
                      +++||+++.|++|++|+...
T Consensus       274 g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          274 ANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             TCCEEEEESSSCEEEEEECT
T ss_pred             CCEEEEEcCCCeEEEEEECC
Confidence            99999999999999999863

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3e-29  Score=265.53  Aligned_cols=288  Identities=10%  Similarity=0.027  Sum_probs=201.9

Q ss_pred             ccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCC
Q 005342          311 FPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSN  384 (701)
Q Consensus       311 iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~  384 (701)
                      +|++.+.+.+..++.|.+.|.  +++|+||      +.+..+++||+.++......                        
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~--~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~------------------------   56 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVT--DYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQ------------------------   56 (355)
T ss_dssp             ----------------CCCCC--EEEECTTSSEEEEECSSEEEEEEETTEEEEEEE------------------------
T ss_pred             cccccccCCccccccCCCceE--EEEECCCCCEEEEEcCCEEEEEecCCcceeeee------------------------
Confidence            577888888888899999999  9999999      55667899999877655441                        


Q ss_pred             CCccccCCCceEEEEEcCCCCeE-EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC
Q 005342          385 DSSCFNDNNQSRESTSLPDADSA-VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA  463 (701)
Q Consensus       385 ~~~~l~~h~~V~~l~~spdg~~l-~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg  463 (701)
                            .+..+..+++.++++.+ ++|+.|++|++||..    ++++.. .+   .+...|.++.+++++  ++++ .|+
T Consensus        57 ------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~----~~~~~~-~~---~~~~~v~~v~~~~~~--~~~~-~~~  119 (355)
T 3vu4_A           57 ------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV----KKQDVS-RI---KVDAPVKDLFLSREF--IVVS-YGD  119 (355)
T ss_dssp             ------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETT----TTEEEE-EE---ECSSCEEEEEECSSE--EEEE-ETT
T ss_pred             ------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECC----CCcEEE-EE---ECCCceEEEEEcCCE--EEEE-EcC
Confidence                  11125678899988887 567788999999997    554433 12   145689999999875  3433 478


Q ss_pred             cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEE--Ee-CCeEEEEeCCCCc----
Q 005342          464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS--AS-GGKISIFSLETFQ----  536 (701)
Q Consensus       464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s--~s-dg~I~iwd~~~~~----  536 (701)
                      .+++||+.+..                    +.+.. +.    .+...++++..++++  |+ ||.|++||+.++.    
T Consensus       120 ~i~i~d~~~~~--------------------~~~~~-~~----~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~  174 (355)
T 3vu4_A          120 VISVFKFGNPW--------------------KRITD-DI----RFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATT  174 (355)
T ss_dssp             EEEEEESSTTC--------------------CBSSC-CE----EEEEEEEEETTEEEEEESSCTTCEEEEECCC------
T ss_pred             EEEEEECCCCc--------------------eeeEE-ec----cCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccc
Confidence            99999774320                    21111 11    122333444455665  45 8999999998765    


Q ss_pred             ------------EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCc-EEEEeCCCCceEEeec-C-CCCCeEEEEEecCCCE
Q 005342          537 ------------TLATFANPPPIATYFILLPQD-LFAFGFDDSS-ILVHCPCTKKTKAKLK-G-HQNRITCLAYSLSLNV  600 (701)
Q Consensus       537 ------------~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~-I~iwd~~~~~~~~~l~-~-h~~~V~~v~~spdg~~  600 (701)
                                  .+..+.+|...|++++|+|+| ++++|+.|++ |++||+++++.+..+. + |.+.|++++|+|+|++
T Consensus       175 ~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~  254 (355)
T 3vu4_A          175 QDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSK  254 (355)
T ss_dssp             ------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCE
T ss_pred             ccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCE
Confidence                        267889999999999999999 9999999998 9999999999999998 6 9999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeeeeeeee-----------------ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEE
Q 005342          601 LVSSGADAQLCVWDAVGWKKLCSKFLHS-----------------FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDV  662 (701)
Q Consensus       601 l~s~s~D~~I~vwd~~~g~~~~~~~l~~-----------------~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~i  662 (701)
                      |++++.|++|++||+..+.......+..                 +..+..   .....++|+|||+.++++ .||.+++
T Consensus       255 l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~d~~~l~~~~~dg~~~~  331 (355)
T 3vu4_A          255 LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH---VRGCKIAWISESSLVVVWPHTRMIET  331 (355)
T ss_dssp             EEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT---CCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred             EEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC---CCceEEEEeCCCCEEEEEeCCCeEEE
Confidence            9999999999999998753222111110                 111111   334679999999999997 8999999


Q ss_pred             EECCCCc
Q 005342          663 YEAPTLN  669 (701)
Q Consensus       663 wd~~~g~  669 (701)
                      |++..++
T Consensus       332 ~~~~~~~  338 (355)
T 3vu4_A          332 FKVVFDD  338 (355)
T ss_dssp             EEEEEET
T ss_pred             EEEEcCC
Confidence            9986543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=2.9e-29  Score=264.53  Aligned_cols=264  Identities=12%  Similarity=0.109  Sum_probs=208.3

Q ss_pred             ccCCCc-eEEEEEcCCCCeE-EEEcC---CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC---CCEEEEEE
Q 005342          389 FNDNNQ-SRESTSLPDADSA-VCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS---GDFLVALT  460 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l-~s~s~---d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd---g~~l~s~s  460 (701)
                      +.+|.. |.+++|+|++..+ ++|+.   |+.|++|++.    +++......  .+|...|.+++|+|+   |+++++|+
T Consensus        14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~----~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~   87 (357)
T 3i2n_A           14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ----HGDLKLLRE--IEKAKPIKCGTFGATSLQQRYLATGD   87 (357)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEEC----SSSEEEEEE--EEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred             ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCC----CCcccceee--ecccCcEEEEEEcCCCCCCceEEEec
Confidence            567998 9999999999655 55665   8999999998    554433221  147889999999999   69999999


Q ss_pred             CCCcEEEEecCCCCccccccccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEe------c--CCEEEEEe-CCeEEEE
Q 005342          461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFAL------R--GSHLFSAS-GGKISIF  530 (701)
Q Consensus       461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~------s--~~~l~s~s-dg~I~iw  530 (701)
                      .||.|++||+.+                     +. .+.. + .+|...|.+++|      +  ++++++++ ||.|++|
T Consensus        88 ~dg~i~iwd~~~---------------------~~~~~~~-~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw  144 (357)
T 3i2n_A           88 FGGNLHIWNLEA---------------------PEMPVYS-V-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW  144 (357)
T ss_dssp             TTSCEEEECTTS---------------------CSSCSEE-E-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred             CCCeEEEEeCCC---------------------CCccEEE-E-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence            999999997633                     22 2211 2 478899999954      5  77999999 9999999


Q ss_pred             eCCCCc-EEEEecCCCC----CeEEEE----EcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec---C
Q 005342          531 SLETFQ-TLATFANPPP----IATYFI----LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL---S  597 (701)
Q Consensus       531 d~~~~~-~~~~~~~~~~----~i~~l~----~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp---d  597 (701)
                      |+.++. .+..+..+..    .+.+++    |+|++ ++++|+.||.|++||+++++.... ..|...|.+++|+|   +
T Consensus       145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~  223 (357)
T 3i2n_A          145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDIS  223 (357)
T ss_dssp             CTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSS
T ss_pred             eCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCC
Confidence            999886 6777765544    788888    78899 999999999999999999887554 55889999999999   9


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE-ecCeEEEEECCCCc------
Q 005342          598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI-HEGQIDVYEAPTLN------  669 (701)
Q Consensus       598 g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg-~Dg~I~iwd~~~g~------  669 (701)
                      ++++++++.||.|++||+++++.........+ .+|.   ..|++++|+|+++ +++++ .||.|++||+.++.      
T Consensus       224 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  299 (357)
T 3i2n_A          224 MNKLVATSLEGKFHVFDMRTQHPTKGFASVSE-KAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD  299 (357)
T ss_dssp             CCEEEEEESTTEEEEEEEEEEETTTEEEEEEE-ECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred             CCEEEEECCCCeEEEEeCcCCCcccceeeecc-CCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence            99999999999999999998654332222212 2454   8999999999998 77775 79999999997653      


Q ss_pred             -------------eeeeeee----eeEEEEEeeE
Q 005342          670 -------------HTSQVLL----ISHIMFVQIV  686 (701)
Q Consensus       670 -------------~~~~l~~----i~~~~fs~~~  686 (701)
                                   .+..+.+    |++++|+|+.
T Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  333 (357)
T 3i2n_A          300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK  333 (357)
T ss_dssp             TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS
T ss_pred             CCCCccccccccceeeccccCCCCeeEEEEcCCC
Confidence                         4555554    9999999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=3.3e-29  Score=269.14  Aligned_cols=271  Identities=10%  Similarity=0.065  Sum_probs=209.0

Q ss_pred             ccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEee------cCCCCCCCCEEEEEEec-CCCEEEEE
Q 005342          389 FNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLL------LPDNSFGGRVVRLIYSH-SGDFLVAL  459 (701)
Q Consensus       389 l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~------~~~~~~~~~v~~l~~sp-dg~~l~s~  459 (701)
                      +.+|.. |.+++|+| ++++|++|+.||.|++|++.+...........      ....+|...|.+++|+| ++.+++++
T Consensus        39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  118 (408)
T 4a11_B           39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS  118 (408)
T ss_dssp             CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred             eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence            356888 99999999 99999999999999999998432222111000      01124889999999999 77899999


Q ss_pred             ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----CCEEEEEe-CCeEEEEeCC
Q 005342          460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLE  533 (701)
Q Consensus       460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~~~l~s~s-dg~I~iwd~~  533 (701)
                      +.||.|++||+                     .++..... +  .+...+.++.++     +.++++++ ||.|++||++
T Consensus       119 ~~d~~i~iwd~---------------------~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B          119 SFDKTLKVWDT---------------------NTLQTADV-F--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             ETTSEEEEEET---------------------TTTEEEEE-E--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             eCCCeEEEeeC---------------------CCCcccee-c--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            99999999965                     44554332 2  256778888888     34888888 9999999999


Q ss_pred             CCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-eEEee---------------cCCCCCeEEEEEe
Q 005342          534 TFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKL---------------KGHQNRITCLAYS  595 (701)
Q Consensus       534 ~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~-~~~~l---------------~~h~~~V~~v~~s  595 (701)
                      +++.+..+.+|...|.+++|+|++  .+++|+.||.|++||++++. .+..+               .+|...|.+++|+
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence            999999999999999999999999  58999999999999998765 33333               5688999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee
Q 005342          596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       596 pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      |++++|++++.|+.|++||+.+++........ ......  ......+...+.+.+++++.|+.|++||+.+++.+..+.
T Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  331 (408)
T 4a11_B          255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK-VCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK  331 (408)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCBCCCCCCC-CCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred             CCCCEEEEecCCCeEEEEECCCCccceecccc-cccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence            99999999999999999999997643211111 000110  022223333444555556799999999999999999998


Q ss_pred             e----eeEEEEEeeE
Q 005342          676 L----ISHIMFVQIV  686 (701)
Q Consensus       676 ~----i~~~~fs~~~  686 (701)
                      +    |++++|+|+.
T Consensus       332 ~~~~~v~~~~~s~~~  346 (408)
T 4a11_B          332 GHYKTVDCCVFQSNF  346 (408)
T ss_dssp             CCSSCEEEEEEETTT
T ss_pred             cCCCeEEEEEEcCCC
Confidence            7    9999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.1e-28  Score=258.86  Aligned_cols=252  Identities=12%  Similarity=0.046  Sum_probs=208.4

Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCc----eeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCC
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE----CRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTA  463 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~----~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg  463 (701)
                      .+|.. |.+++|+|++++|++|+.|+.|++|++.    .+.    ...+.    .|...|.+++|+|+++ ++++|+.||
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~----~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg   79 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD----IQAKNVDLLQSL----RYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEE----TTTTEEEEEEEE----ECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeC----CCCccccceeee----ecCCceEEEEECCCCCcEEEEEcCCC
Confidence            47888 9999999999999999999999999997    333    22222    4789999999999999 999999999


Q ss_pred             cEEEEec-CCCCccccccccceeeEEeeCCCCeEEeecccCC--CCCCeEEEEec-CCEEEEEe-CCeEEEEeCCC----
Q 005342          464 THKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFALR-GSHLFSAS-GGKISIFSLET----  534 (701)
Q Consensus       464 ~i~vwd~-~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~----  534 (701)
                      .|++||+ .+                     +....  + .+  |...|.+++|+ ++.+++++ |+.|++||+++    
T Consensus        80 ~i~~wd~~~~---------------------~~~~~--~-~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~  135 (342)
T 1yfq_A           80 EILKVDLIGS---------------------PSFQA--L-TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG  135 (342)
T ss_dssp             CEEEECSSSS---------------------SSEEE--C-BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB
T ss_pred             eEEEEEeccC---------------------CceEe--c-cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc
Confidence            9999965 33                     33322  2 35  88999999999 99999999 99999999987    


Q ss_pred             -----CcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC-Cc--eEEeecCCCCCeEEEEEec-CCCEEEEEe
Q 005342          535 -----FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KK--TKAKLKGHQNRITCLAYSL-SLNVLVSSG  605 (701)
Q Consensus       535 -----~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~-~~--~~~~l~~h~~~V~~v~~sp-dg~~l~s~s  605 (701)
                           ++.+..+. +...+.+++|+|++ +++++.|+.|++||+++ +.  .......|...|.+++|+| +++++++++
T Consensus       136 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  213 (342)
T 1yfq_A          136 VIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             CEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             cccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence                 77777776 88899999999996 99999999999999988 54  3334456888999999999 999999999


Q ss_pred             CCCeEEEEECCCC------eeeeeeeeeeccCCCC------CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342          606 ADAQLCVWDAVGW------KKLCSKFLHSFQTGLV------PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       606 ~D~~I~vwd~~~g------~~~~~~~l~~~~~~~~------~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~  672 (701)
                      .||.|++|++..+      +.  ...+.    +|.      .+...|++++|+|++++|+++ .||.|++||+.+++.+.
T Consensus       214 ~dg~i~i~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  287 (342)
T 1yfq_A          214 IDGRVAVEFFDDQGDDYNSSK--RFAFR----CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTT--CEEEE----CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCCcEEEEEEcCCCccccccc--ceeee----cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh
Confidence            9999999999875      22  12222    221      012589999999999999996 79999999999999988


Q ss_pred             eeee-----eeEEE
Q 005342          673 QVLL-----ISHIM  681 (701)
Q Consensus       673 ~l~~-----i~~~~  681 (701)
                      .+.+     |++++
T Consensus       288 ~~~~~h~~~v~~~~  301 (342)
T 1yfq_A          288 NFAKFNEDSVVKIA  301 (342)
T ss_dssp             ECCCCSSSEEEEEE
T ss_pred             hhhcccCCCceEec
Confidence            8764     66666

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.7e-28  Score=264.32  Aligned_cols=251  Identities=14%  Similarity=0.159  Sum_probs=208.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      +.+++|++  ..+++++.|+.|++|++.    +++......  ..|...|.+++|+|+|++|++|+.||.|++||+    
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~----~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~----  163 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNAD----SGSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV----  163 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETT----TCCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEET----
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCC----CCcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC----
Confidence            45566665  568889999999999998    565444221  237889999999999999999999999999965    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCC-CCcEEEEecCCCCCeEEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFI  552 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~-~~~~~~~~~~~~~~i~~l~  552 (701)
                                       .+++.+.. + .+|...|.+++|+++++++++ ||.|++||++ .+..+..+.+|...|.+++
T Consensus       164 -----------------~~~~~~~~-~-~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  224 (401)
T 4aez_A          164 -----------------ESQTKLRT-M-AGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA  224 (401)
T ss_dssp             -----------------TTCCEEEE-E-CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             -----------------cCCeEEEE-e-cCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE
Confidence                             44454432 2 478999999999988999999 9999999998 4667888899999999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCC-EEEEEe--CCCeEEEEECCCCeeeeeeeeee
Q 005342          553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSG--ADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~-~l~s~s--~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      |+|++ ++++|+.||.|++||+++++.+..+.+|...|.+++|+|++. ++++++  .|+.|++||+.+++...  .+. 
T Consensus       225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~--~~~-  301 (401)
T 4aez_A          225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN--TVD-  301 (401)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE--EEE-
T ss_pred             EcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE--EEe-
Confidence            99999 999999999999999999999999999999999999999764 666765  79999999999976432  222 


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEE--E-ecCeEEEEECCCCceeeee--ee----eeEEEEEeeE
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQV--LL----ISHIMFVQIV  686 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~s--g-~Dg~I~iwd~~~g~~~~~l--~~----i~~~~fs~~~  686 (701)
                         ++    ..|.+++|+|+++++++  | .||.|++||+.+++.....  .+    |++++|+|+.
T Consensus       302 ---~~----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg  361 (401)
T 4aez_A          302 ---AG----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG  361 (401)
T ss_dssp             ---CS----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS
T ss_pred             ---CC----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC
Confidence               22    78999999999999998  4 6999999999997765553  33    9999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-30  Score=281.48  Aligned_cols=241  Identities=8%  Similarity=-0.004  Sum_probs=182.4

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccCCCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDS  386 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspds~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~  386 (701)
                      ++|+  |...++++   ++|...|+  +++|+|++.++++.+|+.   ++...          +.               
T Consensus        37 ~TV~--d~~~~~~l---~gh~~~v~--~V~FsPdg~~~~~~~~~~---~~~~~----------~~---------------   81 (588)
T 2j04_A           37 ISIG--QPKYAKDI---NCNSKNLF--HVKEFPLEFENKLDFELA---QQNGL----------LN---------------   81 (588)
T ss_dssp             EEEE--EECCCSCC---SSBGGGTE--EEEEECCCCCCTTTTSCC---CSSCS----------ST---------------
T ss_pred             ceee--ccccccee---cCCCccEE--EEEECCCCCcceEEEEeC---CCceE----------ee---------------
Confidence            5666  55555444   79999999  999999875655555543   32222          00               


Q ss_pred             ccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCC-----CCEEEEEEecCCCEEEEEE
Q 005342          387 SCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFG-----GRVVRLIYSHSGDFLVALT  460 (701)
Q Consensus       387 ~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~-----~~v~~l~~spdg~~l~s~s  460 (701)
                         ..|.. |.+++|||||+.||+++.||.|++|+..    .  +..   ... |.     ..|.+++|||||++|++|+
T Consensus        82 ---~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~----~--~l~---~l~-~~~~~~~~sv~svafSPDG~~LAsgs  148 (588)
T 2j04_A           82 ---SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN----K--MLT---NLD-SKGNLSSRTYHCFEWNPIESSIVVGN  148 (588)
T ss_dssp             ---TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT----E--EEE---ECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred             ---cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC----c--eee---ecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence               04455 9999999999999999999999999964    2  222   112 33     3699999999999999999


Q ss_pred             CCCcEEEEecCCCCccccccccceeeEEeeCCCCe-EEeecc---cCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCC
Q 005342          461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL-VMTNDI---AADPKDSISCFALR-GSHLFSAS-GGKISIFSLET  534 (701)
Q Consensus       461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~---~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~  534 (701)
                      .||+|++||+.++..                ...+ +....+   ..+|...|.+++|+ +. +++++ |+.|++||+.+
T Consensus       149 ~DGtVkIWd~~~~~l----------------~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~  211 (588)
T 2j04_A          149 EDGELQFFSIRKNSE----------------NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSA  211 (588)
T ss_dssp             TTSEEEEEECCCCTT----------------TCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCS
T ss_pred             CCCEEEEEECCCCcc----------------ccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCC
Confidence            999999997743210                0000 000112   14688999999999 44 77777 99999999988


Q ss_pred             CcE---EEEe-cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE--ecCCCEEEEEeCC
Q 005342          535 FQT---LATF-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY--SLSLNVLVSSGAD  607 (701)
Q Consensus       535 ~~~---~~~~-~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~--spdg~~l~s~s~D  607 (701)
                      +..   .+++ .+|...|.+++|+  | .+|+++ +++|++||+.+++......||.+.|..++|  +||+..+++++.|
T Consensus       212 ~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed  288 (588)
T 2j04_A          212 SSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT  288 (588)
T ss_dssp             SSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC
T ss_pred             CccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC
Confidence            773   3566 4788899999999  6 888887 699999999988774444489999999999  9999999999999


Q ss_pred             CeEEEEECC
Q 005342          608 AQLCVWDAV  616 (701)
Q Consensus       608 ~~I~vwd~~  616 (701)
                      |+ ++|...
T Consensus       289 G~-klw~~d  296 (588)
T 2j04_A          289 SY-KVLLED  296 (588)
T ss_dssp             EE-EEEESS
T ss_pred             CC-EEEeec
Confidence            99 999975

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.7e-28  Score=254.46  Aligned_cols=253  Identities=14%  Similarity=0.179  Sum_probs=203.9

Q ss_pred             CcccccccCccceeEEEe--ecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccc
Q 005342          307 DKLKFPSMDKSRLLSLIK--QIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDA  377 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~--~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (701)
                      ++|++||+.++++++.+.  +|...|.  +++|+|+       +.|++|++||+.+++++..          +.      
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~--~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~----------~~------  106 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQPGEYIS--SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN----------MT------  106 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEE--EEEECTTSSEEEEEETTSEEEEEETTTTEEEEE----------EE------
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCeEE--EEEECCCCCEEEEEECCCcEEEeecCCceeEEE----------ec------
Confidence            899999999999998876  5666788  9999999       8999999999999988777          33      


Q ss_pred             ccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342          378 SSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL  456 (701)
Q Consensus       378 s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l  456 (701)
                                   +|.. +.+  +++++..+++|+.++.+++|+..    .......  ...+|...+.++.++++++++
T Consensus       107 -------------~h~~~~~~--~~~~~~~l~s~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~l  165 (318)
T 4ggc_A          107 -------------SHSARVGS--LSWNSYILSSGSRSGHIHHHDVR----VAEHHVA--TLSGHSQEVCGLRWAPDGRHL  165 (318)
T ss_dssp             -------------CCSSCEEE--EEEETTEEEEEETTSEEEEEETT----SSSCEEE--EEECCSSCEEEEEECTTSSEE
T ss_pred             -------------CccceEEE--eecCCCEEEEEecCCceEeeecC----CCceeEE--EEcCccCceEEEEEcCCCCEE
Confidence                         4444 444  55667899999999999999987    3222211  223588999999999999999


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEE--EEe-CCeEEEE
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLF--SAS-GGKISIF  530 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~--s~s-dg~I~iw  530 (701)
                      ++++.||.|++||+.++..                . .....  ....+...|.+++++   +..+.  +++ ++.|++|
T Consensus       166 ~s~~~d~~i~iwd~~~~~~----------------~-~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lw  226 (318)
T 4ggc_A          166 ASGGNDNLVNVWPSAPGEG----------------G-WVPLQ--TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW  226 (318)
T ss_dssp             EEEETTSCEEEEESSCBTT----------------B-SCCSE--EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEE
T ss_pred             EEEecCcceeEEECCCCcc----------------c-cccee--eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEE
Confidence            9999999999998754321                0 00111  113577889999998   44443  444 7999999


Q ss_pred             eCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE--eCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 005342          531 SLETFQTLATFANPPPIATYFILLPQD-LFAFG--FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD  607 (701)
Q Consensus       531 d~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~g--s~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D  607 (701)
                      |........... +...+..+.++|++ .++++  +.|+.|++||+++++.+.++.+|.+.|++++|+|||++|||||.|
T Consensus       227 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D  305 (318)
T 4ggc_A          227 NVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD  305 (318)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             eccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            999888776665 67789999999999 55544  489999999999999999999999999999999999999999999


Q ss_pred             CeEEEEECCCC
Q 005342          608 AQLCVWDAVGW  618 (701)
Q Consensus       608 ~~I~vwd~~~g  618 (701)
                      ++|+|||+...
T Consensus       306 ~~v~iWd~~~~  316 (318)
T 4ggc_A          306 ETLRLWRCFEL  316 (318)
T ss_dssp             TEEEEECCSCC
T ss_pred             CeEEEEECCCC
Confidence            99999999764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.2e-28  Score=257.93  Aligned_cols=262  Identities=13%  Similarity=0.063  Sum_probs=204.1

Q ss_pred             EEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       321 ~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      ..+.+|.+.|.  +++|+|+       +.|++|++||+.++.....                         ....+.+|.
T Consensus         5 ~~~~gH~~~v~--~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------------------~~~~~~~~~   57 (351)
T 3f3f_A            5 PFDSGHDDLVH--DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE-------------------------LSDSWRAHD   57 (351)
T ss_dssp             CEECCCSSCEE--EEEECSSSSEEEEEETTSEEEEEEECSSSCCEE-------------------------EEEEEECCS
T ss_pred             ccCccccccee--EEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce-------------------------ecceeccCC
Confidence            35689999999  9999999       7899999999987654322                         011245788


Q ss_pred             c-eEEEEEcC--CCCeEEEEcCCCcEEEEeccccCCCC--ceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcEE
Q 005342          394 Q-SRESTSLP--DADSAVCAKSLEKSVNLKLQLINEPS--ECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHK  466 (701)
Q Consensus       394 ~-V~~l~~sp--dg~~l~s~s~d~~v~iw~~~~~~~~~--~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~  466 (701)
                      . |.+++|+|  |+++|++|+.||.|++||+.......  ...........|...|.+++|+|+  +.++++++.||.|+
T Consensus        58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~  137 (351)
T 3f3f_A           58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILR  137 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred             CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence            8 99999999  69999999999999999997422111  000111123458899999999999  99999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----CCEEEEEe-CCeEEEEeCCCCcE--E
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQT--L  538 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~~~l~s~s-dg~I~iwd~~~~~~--~  538 (701)
                      +||+.+....     ..+     ...............|...+.+++|+     +..+++++ ++.+.+|+...++.  +
T Consensus       138 iwd~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  207 (351)
T 3f3f_A          138 LYDALEPSDL-----RSW-----TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA  207 (351)
T ss_dssp             EEECSSTTCT-----TCC-----EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EecCCChHHh-----ccc-----cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence            9998655421     000     00000000000113577889999997     67888888 89998888877764  7


Q ss_pred             EEecCCCCCeEEEEEcCCC-----eEEEEeCCCcEEEEeCCCC-------------------------------------
Q 005342          539 ATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCTK-------------------------------------  576 (701)
Q Consensus       539 ~~~~~~~~~i~~l~~spdg-----~l~~gs~dg~I~iwd~~~~-------------------------------------  576 (701)
                      ..+.+|...|++++|+|++     ++++|+.||.|++||++++                                     
T Consensus       208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
T 3f3f_A          208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK  287 (351)
T ss_dssp             EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred             eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence            7788899999999999995     7999999999999999874                                     


Q ss_pred             ---------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342          577 ---------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       577 ---------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                               +.+..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++
T Consensus       288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence                     6677888999999999999999999999999999999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=5.9e-29  Score=270.91  Aligned_cols=247  Identities=15%  Similarity=0.162  Sum_probs=209.4

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGD  381 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D  381 (701)
                      +.|++||..+++++..+.+|.+.|.  +++|.++     +.|++|++||+.++++...+                     
T Consensus       153 g~i~iwd~~~~~~~~~~~~h~~~v~--~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---------------------  209 (435)
T 1p22_A          153 NTIKIWDKNTLECKRILTGHTGSVL--CLQYDERVIITGSSDSTVRVWDVNTGEMLNTL---------------------  209 (435)
T ss_dssp             SCEEEEESSSCCEEEEECCCSSCEE--EEECCSSEEEEEETTSCEEEEESSSCCEEEEE---------------------
T ss_pred             CeEEEEeCCCCeEEEEEcCCCCcEE--EEEECCCEEEEEcCCCeEEEEECCCCcEEEEE---------------------
Confidence            8999999999999999999999999  9999766     88999999999999877662                     


Q ss_pred             CCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342          382 DSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT  460 (701)
Q Consensus       382 ~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s  460 (701)
                              .+|.. |.+++|++  ..+++|+.||.|++||+.    .+..........+|...|.+++|  +++++++|+
T Consensus       210 --------~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~----~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~  273 (435)
T 1p22_A          210 --------IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMA----SPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS  273 (435)
T ss_dssp             --------CCCCSCEEEEECCT--TEEEEEETTSCEEEEECS----SSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred             --------cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCC----CCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence                    35666 99999975  599999999999999997    33322211123468899999999  788999999


Q ss_pred             CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342          461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLA  539 (701)
Q Consensus       461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~  539 (701)
                      .||.|++||+                     .+++.+.. + .+|...|.+++++++++++|+ ||.|++||+++++.+.
T Consensus       274 ~dg~i~vwd~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~  330 (435)
T 1p22_A          274 GDRTIKVWNT---------------------STCEFVRT-L-NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR  330 (435)
T ss_dssp             TTSEEEEEET---------------------TTCCEEEE-E-ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCCeEEEEEC---------------------CcCcEEEE-E-cCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            9999999965                     44554432 2 368889999999988999999 9999999999999999


Q ss_pred             EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc---------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 005342          540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ  609 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~---------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~  609 (701)
                      .+.+|...|.++++  ++ ++++|+.||.|++||+.++.         .+..+.+|.+.|++++|  ++++|++|+.||+
T Consensus       331 ~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~  406 (435)
T 1p22_A          331 VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT  406 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred             EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCE
Confidence            99999999999999  67 99999999999999998766         78889999999999999  7889999999999


Q ss_pred             EEEEECCCCe
Q 005342          610 LCVWDAVGWK  619 (701)
Q Consensus       610 I~vwd~~~g~  619 (701)
                      |++||+.++.
T Consensus       407 i~iwd~~~~~  416 (435)
T 1p22_A          407 ILIWDFLNDP  416 (435)
T ss_dssp             EEEEC-----
T ss_pred             EEEEECCCCC
Confidence            9999999864

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=2e-28  Score=263.75  Aligned_cols=266  Identities=13%  Similarity=0.099  Sum_probs=209.3

Q ss_pred             eEEEEEcCCCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcEEEEecCC
Q 005342          395 SRESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~  472 (701)
                      ...++++|+...++ +++.||.|++|++..   .++.........+|...|.+++|+| ++++|++|+.||.|++||+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~---~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~  113 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGK---TGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD  113 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTC---CEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECcc---CCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence            44578888876544 578899999999963   2221110112346899999999999 999999999999999998754


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C-CEEEEEe-CCeEEEEeCCCCcEEEEe--cCCCC
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLATF--ANPPP  546 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~-~~l~s~s-dg~I~iwd~~~~~~~~~~--~~~~~  546 (701)
                      +....              .....+.. + .+|...|.+++|+  + .++++++ ||.|++||+++++.+..+  .+|..
T Consensus       114 ~~~~~--------------~~~~~~~~-~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  177 (402)
T 2aq5_A          114 GGLVL--------------PLREPVIT-L-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD  177 (402)
T ss_dssp             TCCSS--------------CBCSCSEE-E-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS
T ss_pred             CCCcc--------------ccCCceEE-e-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC
Confidence            32100              00011111 2 3789999999999  4 6899999 999999999999999999  78999


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee-cCCCCC-eEEEEEecCCCEEEEE---eCCCeEEEEECCCCee
Q 005342          547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNR-ITCLAYSLSLNVLVSS---GADAQLCVWDAVGWKK  620 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l-~~h~~~-V~~v~~spdg~~l~s~---s~D~~I~vwd~~~g~~  620 (701)
                      .|.+++|+|++ ++++|+.||.|++||+++++.+..+ .+|.+. +.+++|+|++++|++|   +.|+.|++||+.+++.
T Consensus       178 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          178 TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence            99999999999 9999999999999999999999988 788875 8999999999999999   7999999999998653


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCce-ee---eee--e-eeEEEEEeeE
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-TS---QVL--L-ISHIMFVQIV  686 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~~-~~---~l~--~-i~~~~fs~~~  686 (701)
                      .    +......+.   ..+.+++|+|+++++++ | .|+.|++||+.+++. +.   .+.  . |++++|+|+.
T Consensus       258 ~----~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~  325 (402)
T 2aq5_A          258 P----LSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKR  325 (402)
T ss_dssp             C----SEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGG
T ss_pred             C----ceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccc
Confidence            1    111111333   77999999999999975 6 699999999998883 33   333  2 9999999874

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.8e-29  Score=288.63  Aligned_cols=251  Identities=14%  Similarity=0.155  Sum_probs=203.8

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCc
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTAT  464 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~  464 (701)
                      .+.+|.+ |++++|+|+|++|++|+.||.|++|++.    .+....+. ...+|.+.|.+++|+|+  ++++++|+.||.
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~----~~~~~~~~-~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE----GETHKLID-TLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEE----TTEEEEEE-EECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecC----CCCCccce-eccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            3578999 9999999999999999999999999986    32222211 33568999999999998  999999999999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCc-
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQ-  536 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~-  536 (701)
                      |++||+                     .++.  ...  ...+|...|.+++|+    ++.+++|+ ||.|++||+.++. 
T Consensus        79 I~vwd~---------------------~~~~~~~~~--~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~  135 (753)
T 3jro_A           79 VLIWKE---------------------ENGRWSQIA--VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT  135 (753)
T ss_dssp             EEEEEE---------------------ETTEEEEEE--EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred             EEEEEC---------------------CCCcccccc--cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence            999976                     3333  222  114788999999998    56899999 9999999998773 


Q ss_pred             -EEEEecCCCCCeEEEEEcC-------------CC-eEEEEeCCCcEEEEeCCCC----ceEEeecCCCCCeEEEEEecC
Q 005342          537 -TLATFANPPPIATYFILLP-------------QD-LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRITCLAYSLS  597 (701)
Q Consensus       537 -~~~~~~~~~~~i~~l~~sp-------------dg-~l~~gs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~v~~spd  597 (701)
                       ....+.+|...|.+++|+|             ++ .+++|+.||.|++||++++    .....+.+|.+.|++++|+|+
T Consensus       136 ~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  215 (753)
T 3jro_A          136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (753)
T ss_dssp             CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence             4456678999999999999             47 9999999999999999876    566788899999999999999


Q ss_pred             ---CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce
Q 005342          598 ---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH  670 (701)
Q Consensus       598 ---g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~  670 (701)
                         ++++++|+.||+|++||+.++.......+. ...+|.   ..|++++|+|+|+++++| .||.|++||+.++..
T Consensus       216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-~~~~~~---~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL-KEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBS-SSSCCS---SCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred             CCCCCEEEEEecCCEEEEecCCCCCCcceeEEe-ccCCCC---CceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence               899999999999999999987432222222 112343   889999999999999996 899999999986543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.9e-29  Score=279.51  Aligned_cols=259  Identities=11%  Similarity=-0.006  Sum_probs=187.2

Q ss_pred             cCCCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEecC------CCEEEEEECCCcEEEEecCCC
Q 005342          401 LPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHS------GDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       401 spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spd------g~~l~s~s~dg~i~vwd~~~~  473 (701)
                      +|+++.+++++.|++|+||++.    ++++.. .......|.+.|.+++|+|+      +.+|++++.||+|++||+..+
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~----~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~  245 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMN----TSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN  245 (524)
T ss_dssp             ------------CEEEEEEEEE----TTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred             chhhhhhccCCCCceEEEEEcc----CCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence            4455566667789999999997    443211 01111246788999999997      579999999999999998554


Q ss_pred             CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCc-EEEEecCCCCCeEE
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATY  550 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~-~~~~~~~~~~~i~~  550 (701)
                      ....+..        ...... ...  + .+|...|++++|+ +..|++|+ ||+|++||++++. ....+.+|...|++
T Consensus       246 ~~~~~~~--------~~~~~p-~~~--l-~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~s  313 (524)
T 2j04_B          246 ATDVHVF--------KMCEKP-SLT--L-SLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILS  313 (524)
T ss_dssp             SSSSSEE--------ECCCSC-SEE--E-CCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEE
T ss_pred             ccccccc--------eeecCc-eEE--E-EcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEE
Confidence            2110000        000000 011  2 3688999999999 77999999 9999999998764 45668899999999


Q ss_pred             E--EEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCC--CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          551 F--ILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       551 l--~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~--~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      +  +++|+|  +||+|+.|++|++||+++++.+..+.+|..  .|.+++|+|+++.+++++.|++|++||++++...  .
T Consensus       314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~--~  391 (524)
T 2j04_B          314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV--H  391 (524)
T ss_dssp             EEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC--E
T ss_pred             EEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc--e
Confidence            9  578886  889999999999999999888777777754  5889999999999999999999999999987522  2


Q ss_pred             eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee------e---eeEEEEEee
Q 005342          625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL------L---ISHIMFVQI  685 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~------~---i~~~~fs~~  685 (701)
                      .+.    +|.   ..|++|+|||+|++|++| .|++|++||+..+ .+..+.      .   +..++|||.
T Consensus       392 ~l~----gH~---~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~  454 (524)
T 2j04_B          392 PLV----SRE---TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIK  454 (524)
T ss_dssp             EEE----ECS---SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSS
T ss_pred             eee----cCC---CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCC
Confidence            233    565   899999999999999996 7999999998654 333221      1   557777765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.2e-28  Score=257.71  Aligned_cols=245  Identities=11%  Similarity=0.086  Sum_probs=196.9

Q ss_pred             cceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCC--ccccccccccCCCCCCCCCCcccccCCCCCCCc
Q 005342          317 SRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTV--SNLRYASSILTDKPNQEGRPLDASSGDDSNDSS  387 (701)
Q Consensus       317 ~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~  387 (701)
                      |+++..+.+|.+.|.  +++|+|+       +.|++|++||+..+  .....                            
T Consensus         1 G~~~~~~~~h~~~v~--~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----------------------------   50 (379)
T 3jrp_A            1 GSMVVIANAHNELIH--DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT----------------------------   50 (379)
T ss_dssp             ----CCEEECCCCEE--EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE----------------------------
T ss_pred             CCccEEecCCcccEE--EEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeE----------------------------
Confidence            456677899999999  9999999       68999999999843  33332                            


Q ss_pred             cccCCCc-eEEEEEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECC
Q 005342          388 CFNDNNQ-SRESTSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQT  462 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~d  462 (701)
                       +.+|.. |.+++|+|+  +++|++|+.||.|++||+.    .++...+. ....|...|.+++|+|+  +.++++++.|
T Consensus        51 -~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~----~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           51 -LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE----NGRWSQIA-VHAVHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             -ECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE----TTEEEEEE-EECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             -ecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC----CCceeEee-eecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence             357777 999999987  9999999999999999998    55422222 23357899999999999  9999999999


Q ss_pred             CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---------------CCEEEEEe-CCe
Q 005342          463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---------------GSHLFSAS-GGK  526 (701)
Q Consensus       463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---------------~~~l~s~s-dg~  526 (701)
                      |.|++||+.....                  .....  + ..|...|.+++|+               +.++++++ ||.
T Consensus       125 ~~i~v~d~~~~~~------------------~~~~~--~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  183 (379)
T 3jrp_A          125 GKVSVVEFKENGT------------------TSPII--I-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL  183 (379)
T ss_dssp             SEEEEEECCTTSC------------------CCEEE--E-ECCTTCEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred             CcEEEEecCCCCc------------------eeeEE--e-cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence            9999998743210                  01111  1 3678899999997               36788888 999


Q ss_pred             EEEEeCCCCc----EEEEecCCCCCeEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCc-----eEEeecCCCCCeEEEE
Q 005342          527 ISIFSLETFQ----TLATFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKK-----TKAKLKGHQNRITCLA  593 (701)
Q Consensus       527 I~iwd~~~~~----~~~~~~~~~~~i~~l~~spd---g-~l~~gs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~v~  593 (701)
                      |++||++++.    ....+.+|...|.+++|+|+   + ++++++.||.|++||++++.     .+.....|...|++++
T Consensus       184 i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  263 (379)
T 3jrp_A          184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS  263 (379)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred             EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE
Confidence            9999997764    55677889999999999999   9 99999999999999998864     2223334888999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEECCCC
Q 005342          594 YSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       594 ~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      |+|+|++|++++.||.|++|++..+
T Consensus       264 ~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          264 WSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             ECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             EcCCCCEEEEecCCCcEEEEeCCCC
Confidence            9999999999999999999999843

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.1e-27  Score=259.83  Aligned_cols=266  Identities=12%  Similarity=0.041  Sum_probs=205.0

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCc---e-eEeecCC---------------------------------
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE---C-RTLLLPD---------------------------------  437 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~---~-~~l~~~~---------------------------------  437 (701)
                      +.+++|+|||++|+++ .++.|++||+.    +++   . ..+....                                 
T Consensus         7 ~~~v~~s~dg~~l~~~-~~~~i~v~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            7 LQNLLTSRDGSLVFAI-IKNCILSFKYQ----SPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             CCEEEECSSSSEEEEE-ETTEEEEEEEE----TTTEEEEEEEEECCC---------------------------------
T ss_pred             EEEEEecCCCCEEEEE-eCCeEEEEECC----CCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            6789999999977666 46899999987    443   1 1111000                                 


Q ss_pred             -----------------CCCCCCEEEEEEecCCCEE-EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee
Q 005342          438 -----------------NSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN  499 (701)
Q Consensus       438 -----------------~~~~~~v~~l~~spdg~~l-~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~  499 (701)
                                       ..|.+.|.+++|+|+|++| ++++.||.|++||+.                   ..++.....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~-------------------~~~~~~~~~  142 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVD-------------------KTSKNVLKL  142 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEEC-------------------SSSSSCEEE
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECc-------------------CCCCceeee
Confidence                             1244479999999999996 788889999999873                   113332221


Q ss_pred             cccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE----EecCCCCCeEEEEEcCC---C-eEEEEeCCCcE
Q 005342          500 DIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATYFILLPQ---D-LFAFGFDDSSI  568 (701)
Q Consensus       500 ~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~----~~~~~~~~i~~l~~spd---g-~l~~gs~dg~I  568 (701)
                      .-...|...|.+++|+  +.+|++++ +|.|++|++.++....    .+.+|...|++++|+|+   + +|++|+.|+.|
T Consensus       143 ~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i  222 (450)
T 2vdu_B          143 RKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHI  222 (450)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCE
T ss_pred             eecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcE
Confidence            1101467889999999  88999999 8999999998876544    67789999999999999   8 99999999999


Q ss_pred             EEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC-----CC---------
Q 005342          569 LVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-----GL---------  633 (701)
Q Consensus       569 ~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~-----~~---------  633 (701)
                      ++||+++++.+.. +.+|.+.|++++|+ ++++|++|+.|++|++||+.+++............     .|         
T Consensus       223 ~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (450)
T 2vdu_B          223 KISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNE  301 (450)
T ss_dssp             EEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-------
T ss_pred             EEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccc
Confidence            9999999988877 56899999999999 99999999999999999999987543322110000     00         


Q ss_pred             --CCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEEC--CCC---ceeeeeee---eeEEEEEee
Q 005342          634 --VPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEA--PTL---NHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       634 --~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~--~~g---~~~~~l~~---i~~~~fs~~  685 (701)
                        ......|.+++|+|++++++++  .|+.|+||++  .++   +.+..+.+   |.+++|+|.
T Consensus       302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~  365 (450)
T 2vdu_B          302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND  365 (450)
T ss_dssp             ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT
T ss_pred             ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC
Confidence              0112678999999999999985  6899999999  666   66777765   999999884

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=8.8e-27  Score=253.10  Aligned_cols=291  Identities=16%  Similarity=0.158  Sum_probs=225.7

Q ss_pred             CcccccccC--cc--ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342          307 DKLKFPSMD--KS--RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL  375 (701)
Q Consensus       307 ~~i~iwd~~--~~--~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (701)
                      +.+.+|.++  ++  +.+..+..+. .+.  +++|+|+       +.|++|++||+.+++....+               
T Consensus        99 ~~~~l~~~d~~~~~~~~~~~~~~~~-~~~--~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~---------------  160 (433)
T 3bws_A           99 LNEKLIALDKEGITHRFISRFKTGF-QPK--SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLS---------------  160 (433)
T ss_dssp             GTTCEEECCBTTCSEEEEEEEECSS-CBC--CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEEC---------------
T ss_pred             CceEEEEECCCCCcceEEEEEcCCC-Cce--EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeec---------------
Confidence            334455443  35  5566665543 466  8999998       67889999999999877652               


Q ss_pred             ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC
Q 005342          376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD  454 (701)
Q Consensus       376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~  454 (701)
                               ....+.+|.. |++++|+|+++++++++.|+.|++||+.    +++...   ....|...+.+++|+|+++
T Consensus       161 ---------~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~----~~~~~~---~~~~~~~~~~~~~~~~~~~  224 (433)
T 3bws_A          161 ---------PPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK----TLAYKA---TVDLTGKWSKILLYDPIRD  224 (433)
T ss_dssp             ---------CCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT----TCCEEE---EEECSSSSEEEEEEETTTT
T ss_pred             ---------CcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC----CceEEE---EEcCCCCCeeEEEEcCCCC
Confidence                     1112457888 9999999999999999999999999997    444433   1124678899999999999


Q ss_pred             EEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--------
Q 005342          455 FLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--------  523 (701)
Q Consensus       455 ~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--------  523 (701)
                      .+++++ .|+.|++||+                     .+++.... +  .....+.+++|+  |+++++++        
T Consensus       225 ~l~~~~~~~~~i~~~d~---------------------~~~~~~~~-~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~  280 (433)
T 3bws_A          225 LVYCSNWISEDISVIDR---------------------KTKLEIRK-T--DKIGLPRGLLLSKDGKELYIAQFSASNQES  280 (433)
T ss_dssp             EEEEEETTTTEEEEEET---------------------TTTEEEEE-C--CCCSEEEEEEECTTSSEEEEEEEESCTTCS
T ss_pred             EEEEEecCCCcEEEEEC---------------------CCCcEEEE-e--cCCCCceEEEEcCCCCEEEEEECCCCcccc
Confidence            886555 6899999955                     55554432 2  234568999998  77887776        


Q ss_pred             -CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCE
Q 005342          524 -GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV  600 (701)
Q Consensus       524 -dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~  600 (701)
                       ||.|++||+.+++.+..+. +...+.+++|+|++  .+++++.|+.|++||+.+++.+..+. +...+.+++|+|+|++
T Consensus       281 ~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~  358 (433)
T 3bws_A          281 GGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKY  358 (433)
T ss_dssp             CCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSE
T ss_pred             CCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCE
Confidence             5799999999998877764 55678999999999  55677899999999999998888876 6778999999999998


Q ss_pred             EEEEeC---------------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEE
Q 005342          601 LVSSGA---------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVY  663 (701)
Q Consensus       601 l~s~s~---------------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iw  663 (701)
                      +++++.               ||.|++||+.+++...  .+.    ++    ..+.+++|+|+|++|+++  .|+.|++|
T Consensus       359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~--~~~----~~----~~~~~~~~s~dg~~l~~~~~~d~~i~v~  428 (433)
T 3bws_A          359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE--FWE----AG----NQPTGLDVSPDNRYLVISDFLDHQIRVY  428 (433)
T ss_dssp             EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE--EEE----CS----SSEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             EEEEecCCCccccccccccccceEEEEEECCCCcEEE--Eec----CC----CCCceEEEcCCCCEEEEEECCCCeEEEE
Confidence            888876               5799999999986432  222    22    678999999999999874  49999999


Q ss_pred             ECCC
Q 005342          664 EAPT  667 (701)
Q Consensus       664 d~~~  667 (701)
                      ++..
T Consensus       429 ~~~~  432 (433)
T 3bws_A          429 RRDG  432 (433)
T ss_dssp             EETT
T ss_pred             EecC
Confidence            9863

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=5.3e-28  Score=263.00  Aligned_cols=258  Identities=16%  Similarity=0.222  Sum_probs=201.8

Q ss_pred             ccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCC----CceeEeecCCCCCCCCEEEEEEecCCC-EEEEEEC
Q 005342          389 FNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEP----SECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQ  461 (701)
Q Consensus       389 l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~----~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~  461 (701)
                      ..+|.. |++++|+|+ +.++++|+.||.|++|++......    +....+ ....+|...|.+++|+|++. +|++|+.
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPD-LRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCS-EEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCc-EEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            457888 999999997 789999999999999999742100    001110 02235888999999999998 9999999


Q ss_pred             CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe-ecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCC-
Q 005342          462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-  535 (701)
Q Consensus       462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~-  535 (701)
                      ||.|++|++.....                 ....+. .....+|...|.+++|+   +.++++++ ||.|++||++++ 
T Consensus       203 dg~i~vwd~~~~~~-----------------~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~  265 (430)
T 2xyi_A          203 DHTICLWDINATPK-----------------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN  265 (430)
T ss_dssp             TSCEEEEETTSCCB-----------------GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred             CCeEEEEeCCCCCC-----------------CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            99999998854211                 000000 00113688899999998   67888888 999999999987 


Q ss_pred             --cEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEEecCCC-EEEEEeCCCe
Q 005342          536 --QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQ  609 (701)
Q Consensus       536 --~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~spdg~-~l~s~s~D~~  609 (701)
                        +.+..+..|...|++++|+|++  ++++|+.||.|++||+++ +..+..+.+|.+.|++++|+|+++ +|++++.|++
T Consensus       266 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~  345 (430)
T 2xyi_A          266 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR  345 (430)
T ss_dssp             SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc
Confidence              5777788899999999999998  789999999999999998 567888999999999999999985 7999999999


Q ss_pred             EEEEECCCCeeee---------eeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE-ecCeEEEEECCCC
Q 005342          610 LCVWDAVGWKKLC---------SKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI-HEGQIDVYEAPTL  668 (701)
Q Consensus       610 I~vwd~~~g~~~~---------~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg-~Dg~I~iwd~~~g  668 (701)
                      |++||+.......         ...+. ...+|.   ..|++++|+|+++ +++++ .||.|+||++.++
T Consensus       346 i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          346 LHVWDLSKIGEEQSTEDAEDGPPELLF-IHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CEEEEGGGTTCCCCHHHHHHCCTTEEE-ECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEEEeCCCCccccCccccccCCcceEE-EcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9999998732110         02222 223554   8899999999999 77775 7999999999654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=3.2e-27  Score=249.62  Aligned_cols=263  Identities=11%  Similarity=0.115  Sum_probs=206.3

Q ss_pred             ccCCCc-eEEEEEcCC---CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342          389 FNDNNQ-SRESTSLPD---ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT  464 (701)
Q Consensus       389 l~~h~~-V~~l~~spd---g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  464 (701)
                      +.+|.. |++++|+|+   |++|++|+.||.|++|++.+   .+.....  ...+|...|.+++|+|++++|++++.||.
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~---~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD---SGQTIPK--AQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT---TSCEEEE--EEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC---CCceeEE--EeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            678988 999999999   69999999999999999973   1333211  12358899999999999999999999999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEe--c--CCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSAS-GGKISIFSLETFQTLA  539 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~--s--~~~l~s~s-dg~I~iwd~~~~~~~~  539 (701)
                      |++||+                     .++.....   ..|...|.+++|  +  +.++++++ ||.|++||+++++.+.
T Consensus       110 v~iwd~---------------------~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  165 (368)
T 3mmy_A          110 AKMWDL---------------------SSNQAIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM  165 (368)
T ss_dssp             EEEEET---------------------TTTEEEEE---EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE
T ss_pred             EEEEEc---------------------CCCCceee---ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE
Confidence            999965                     45554432   358899999999  6  77899999 9999999999999988


Q ss_pred             EecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEee-c-CCCCCeEEEEEecCCCE----EEEEeCCCeEEEE
Q 005342          540 TFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-K-GHQNRITCLAYSLSLNV----LVSSGADAQLCVW  613 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l-~-~h~~~V~~v~~spdg~~----l~s~s~D~~I~vw  613 (701)
                      .+..+. .+.++.+.++ .+++++.++.+++||++........ . .+...+.++++.+++..    +++++.|+.|++|
T Consensus       166 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          166 VLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             EEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             EEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence            888554 5666666644 7888899999999999876443222 1 24456677777766554    9999999999999


Q ss_pred             ECCCCee-eeeeeeeeccCCCCC---------CCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----ee
Q 005342          614 DAVGWKK-LCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----IS  678 (701)
Q Consensus       614 d~~~g~~-~~~~~l~~~~~~~~~---------~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~  678 (701)
                      |+..+.. .....+.    +|..         +...|++++|+|++++|+++ .||.|++||+.+++++..+.+    |+
T Consensus       244 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  319 (368)
T 3mmy_A          244 YINPPNPAKDNFTFK----CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPIS  319 (368)
T ss_dssp             ESSCSCHHHHSEEEE----CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEE
T ss_pred             ecCCCCccccceeee----eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCce
Confidence            9998632 1112222    3320         00279999999999999996 799999999999999999887    99


Q ss_pred             EEEEEeeE
Q 005342          679 HIMFVQIV  686 (701)
Q Consensus       679 ~~~fs~~~  686 (701)
                      +++|+|+.
T Consensus       320 ~~~~s~~g  327 (368)
T 3mmy_A          320 ACCFNHNG  327 (368)
T ss_dssp             EEEECTTS
T ss_pred             EEEECCCC
Confidence            99999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-27  Score=259.14  Aligned_cols=247  Identities=15%  Similarity=0.124  Sum_probs=194.6

Q ss_pred             CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342          327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES  398 (701)
Q Consensus       327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l  398 (701)
                      ..+|.  +++||||       +.|++|+  |...+                                +++.+|.. |+++
T Consensus        15 ~~~v~--sv~~SpDG~~iASas~D~TV~--d~~~~--------------------------------~~l~gh~~~v~~V   58 (588)
T 2j04_A           15 EDWKN--NLTWARDGTLYLTTFPDISIG--QPKYA--------------------------------KDINCNSKNLFHV   58 (588)
T ss_dssp             SSSSC--CEEECTTSCEEEECSSSEEEE--EECCC--------------------------------SCCSSBGGGTEEE
T ss_pred             hccEE--EEEECCCCCEEEEEcCCceee--ccccc--------------------------------ceecCCCccEEEE
Confidence            46788  9999999       8999999  64332                                23457888 9999


Q ss_pred             EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccc
Q 005342          399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  478 (701)
Q Consensus       399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g  478 (701)
                      +|+|+|       .++.+.+|+.+    ...  .+  .. .|...|.+++|||||..|++++.||.+++||.        
T Consensus        59 ~FsPdg-------~~~~~~~~~~~----~~~--~~--~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~--------  114 (588)
T 2j04_A           59 KEFPLE-------FENKLDFELAQ----QNG--LL--NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKD--------  114 (588)
T ss_dssp             EEECCC-------CCCTTTTSCCC----SSC--SS--TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEET--------
T ss_pred             EECCCC-------CcceEEEEeCC----Cce--Ee--ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC--------
Confidence            999998       45555555543    111  11  11 35788999999999999999999999999963        


Q ss_pred             ccccceeeEEeeCCCCeEEeecccCCCC-----CCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc-------EEEEe--
Q 005342          479 EENVNMESQLYQPSSKLVMTNDIAADPK-----DSISCFALR--GSHLFSAS-GGKISIFSLETFQ-------TLATF--  541 (701)
Q Consensus       479 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~-------~~~~~--  541 (701)
                                   ++  ++.. + . |.     ..+.+++||  |++|++|+ ||+|++||+.++.       .+.++  
T Consensus       115 -------------~~--~l~~-l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~  176 (588)
T 2j04_A          115 -------------NK--MLTN-L-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL  176 (588)
T ss_dssp             -------------TE--EEEE-C-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC
T ss_pred             -------------Cc--eeee-c-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec
Confidence                         11  2221 2 2 33     359999999  99999999 9999999998875       35676  


Q ss_pred             --cCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCce---EEee-cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342          542 --ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKT---KAKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA  615 (701)
Q Consensus       542 --~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~---~~~l-~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~  615 (701)
                        .+|...|.+++|+||| +++++.|+.|++||+.++..   .+++ .+|...|.+++|+  |+.||+++ +++|++||+
T Consensus       177 ~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~  252 (588)
T 2j04_A          177 SDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDL  252 (588)
T ss_dssp             SCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEET
T ss_pred             ccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEEC
Confidence              6777899999999999 99999999999999988773   3567 4788999999999  68999887 699999999


Q ss_pred             CCCeeeeeeeeeeccCCCCCCCCCeEEEEE--cCCCCEEEEE-ecCeEEEEEC
Q 005342          616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQF--HPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~--spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      .+++..   .   ...+|.   ..|+.++|  +||+..++++ .||+ ++|..
T Consensus       253 ~~~~~~---~---~~~gh~---~~V~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          253 KNYSIS---S---LKTGSL---ENFHIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             TTTEEE---E---EECSCC---SCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             CCCeEE---E---EEcCCC---ceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence            997531   1   222565   89999999  9999999987 6888 88876

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-26  Score=253.77  Aligned_cols=247  Identities=10%  Similarity=-0.002  Sum_probs=188.1

Q ss_pred             ccCCCc-eEEEEEcCCCCeE-EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          389 FNDNNQ-SRESTSLPDADSA-VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l-~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      ..+|.. |++++|+|+|++| ++|+.||.|++|++.... ......+.  ...+...|.+++|+|+|++|++|+.+|.+.
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~  174 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRK--RFCFSKRPNAISIAEDDTTVIIADKFGDVY  174 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEE--EEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-Cceeeeee--cccCCCCceEEEEcCCCCEEEEEeCCCcEE
Confidence            457777 9999999999996 899999999999996100 12222221  113678899999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEec-C---C-EEEEEe-CCeEEEEeCCCCcEEE
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALR-G---S-HLFSAS-GGKISIFSLETFQTLA  539 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s-~---~-~l~s~s-dg~I~iwd~~~~~~~~  539 (701)
                      +|++....                  ... .... + .+|...|.+++|+ .   . +|++++ |+.|++||+++++.+.
T Consensus       175 ~~~~~~~~------------------~~~~~~~~-~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  234 (450)
T 2vdu_B          175 SIDINSIP------------------EEKFTQEP-I-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD  234 (450)
T ss_dssp             EEETTSCC------------------CSSCCCCC-S-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred             EEecCCcc------------------ccccccee-e-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence            99774321                  110 1101 2 3688899999999 5   4 788888 9999999999998887


Q ss_pred             E-ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC-------------------------CCCeEEE
Q 005342          540 T-FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-------------------------QNRITCL  592 (701)
Q Consensus       540 ~-~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h-------------------------~~~V~~v  592 (701)
                      . +.+|...|++++|+ ++ ++++|+.|+.|++||+++++.+..+..+                         ...|.++
T Consensus       235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  313 (450)
T 2vdu_B          235 KWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI  313 (450)
T ss_dssp             EECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred             eeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence            7 55899999999999 99 9999999999999999999988877632                         3578999


Q ss_pred             EEecCCCEEEEEe-CCCeEEEEEC--CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe-------cCeEEE
Q 005342          593 AYSLSLNVLVSSG-ADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-------EGQIDV  662 (701)
Q Consensus       593 ~~spdg~~l~s~s-~D~~I~vwd~--~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~-------Dg~I~i  662 (701)
                      +|+|+++++++++ .|+.|++|++  ..+..  ...+..+. ++    ..|.+++|+|++.+++++.       ++.|.+
T Consensus       314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~--l~~~~~~~-~~----~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v  386 (450)
T 2vdu_B          314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGD--LALKQIIT-FP----YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF  386 (450)
T ss_dssp             EECSSSSEEEEEETTCSEEEEEEECSSSTTC--EEEEEEEE-CS----SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEeccCCCCc--eeeccEec-cC----CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence            9999999999998 8999999999  44311  12222222 33    6799999999654444332       445788


Q ss_pred             EECC
Q 005342          663 YEAP  666 (701)
Q Consensus       663 wd~~  666 (701)
                      |.+.
T Consensus       387 ~~~~  390 (450)
T 2vdu_B          387 IEYN  390 (450)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-27  Score=249.93  Aligned_cols=254  Identities=10%  Similarity=0.003  Sum_probs=195.1

Q ss_pred             EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccc
Q 005342          399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  478 (701)
Q Consensus       399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g  478 (701)
                      .+.+++.++++|+.||.|++||+.    .++... .+    ....|.++.|+|+   +++++.|+.+++|+...      
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~----~~~~~~-~~----~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~------  104 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLK----DSKTIT-TI----TTPNPRTGGEHPA---IISRGPCNRLLLLYPGN------  104 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEES----SSSCEE-EE----EEECCCTTCCCCS---EEEECSTTEEEEEETTT------
T ss_pred             hhcCCCCEEEEECCCCcEEEEECC----CCcEEE-EE----ecCCceeeeeCCc---eEEecCCCeEEEEEccC------
Confidence            355788999999999999999998    444322 11    1355677788888   89999999999998744      


Q ss_pred             ccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcEEEEecC-CCCCeEEEE
Q 005342          479 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFAN-PPPIATYFI  552 (701)
Q Consensus       479 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~  552 (701)
                            .+.+|+..++.++.. +..+|...|.+++++    ++++++++ ||.|++||+++++....... +...+++++
T Consensus       105 ------~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~  177 (343)
T 3lrv_A          105 ------QITILDSKTNKVLRE-IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV  177 (343)
T ss_dssp             ------EEEEEETTTCCEEEE-EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE
T ss_pred             ------ceEEeecCCcceeEE-eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE
Confidence                  256788888885543 324677889999997    67899999 99999999999988776643 455799999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEeCCCCceE-EeecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342          553 LLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  629 (701)
Q Consensus       553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~-~~l~~-h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~  629 (701)
                      |+|+| ++++|+.||.|++||+++++.+ ..+.+ |.++|++++|+|+|.+|++++++ +|++||+++++..  ..+..+
T Consensus       178 ~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~--~~~~~~  254 (343)
T 3lrv_A          178 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGT--LAYPTY  254 (343)
T ss_dssp             ECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTC--BSSCCC
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcc--eeeccc
Confidence            99999 9999999999999999999887 78888 99999999999999999999954 9999999987532  122211


Q ss_pred             cCCCCCCCCCe--EEEEEcCCCCEEEEE-e-cCeEEEEECCCCceeeeeeeeeEEEEEe
Q 005342          630 QTGLVPETTIV--NHIQFHPDQIHLLSI-H-EGQIDVYEAPTLNHTSQVLLISHIMFVQ  684 (701)
Q Consensus       630 ~~~~~~~~~~v--~~v~~spdg~~l~sg-~-Dg~I~iwd~~~g~~~~~l~~i~~~~fs~  684 (701)
                      . .|.   ..+  .+++|+|+|++|+++ . |+.++||++.++........+..++|+|
T Consensus       255 ~-~~~---~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~  309 (343)
T 3lrv_A          255 T-IPE---FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQS  309 (343)
T ss_dssp             B-C--------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC--
T ss_pred             c-ccc---ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEecCceeEecCc
Confidence            1 121   223  479999999999995 4 9999999997665433332244444444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=8.6e-26  Score=241.74  Aligned_cols=263  Identities=14%  Similarity=0.105  Sum_probs=209.3

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeE-EEEcCCCcEEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSA-VCAKSLEKSVNL  419 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l-~s~s~d~~v~iw  419 (701)
                      +.|++|++||+.+++.+..+                             .+|..+.+++|+|+|+++ ++++.|+.|++|
T Consensus         9 ~~d~~v~v~d~~~~~~~~~~-----------------------------~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~   59 (391)
T 1l0q_A            9 SESDNISVIDVTSNKVTATI-----------------------------PVGSNPMGAVISPDGTKVYVANAHSNDVSII   59 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEE-----------------------------ECSSSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEe-----------------------------ecCCCcceEEECCCCCEEEEECCCCCeEEEE
Confidence            56899999999998877662                             234448899999999977 677799999999


Q ss_pred             eccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342          420 KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT  498 (701)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~  498 (701)
                      |+.    ++++.... +   +...+.+++|+|+|+++++++ .++.|++||+                     .+++...
T Consensus        60 d~~----~~~~~~~~-~---~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~---------------------~~~~~~~  110 (391)
T 1l0q_A           60 DTA----TNNVIATV-P---AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT---------------------TSNTVAG  110 (391)
T ss_dssp             ETT----TTEEEEEE-E---CSSSEEEEEECTTSSEEEEEETTTTEEEEEET---------------------TTTEEEE
T ss_pred             ECC----CCeEEEEE-E---CCCCccceEECCCCCEEEEEECCCCEEEEEEC---------------------CCCeEEE
Confidence            997    55544322 1   234899999999999886665 4699999955                     5555443


Q ss_pred             ecccCCCCCCeEEEEec--CCEE-EEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eE-EEEeCCCcEEEEe
Q 005342          499 NDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHC  572 (701)
Q Consensus       499 ~~~~~~~~~~v~~l~~s--~~~l-~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l-~~gs~dg~I~iwd  572 (701)
                      . +  .+...+.+++|+  |+.+ ++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++ .+ ++++.++.|++||
T Consensus       111 ~-~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d  186 (391)
T 1l0q_A          111 T-V--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVID  186 (391)
T ss_dssp             E-E--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             E-E--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            2 2  234578999999  7766 5666 899999999999988888754 457999999999 55 6788899999999


Q ss_pred             CCCCceEEeecCCCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342          573 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ  649 (701)
Q Consensus       573 ~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s---~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg  649 (701)
                      +++++.+..+. +...+.+++|+|+++++++++   .++.|++||+.+++...  .   +. .+    ..+.+++|+|+|
T Consensus       187 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~--~---~~-~~----~~~~~~~~s~dg  255 (391)
T 1l0q_A          187 TVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA--R---IP-VG----PDPAGIAVTPDG  255 (391)
T ss_dssp             TTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE--E---EE-CC----SSEEEEEECTTS
T ss_pred             CCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE--E---Ee-cC----CCccEEEEccCC
Confidence            99998888776 556789999999999988887   68999999999975332  2   22 33    557899999999


Q ss_pred             CEEE-EE-ecCeEEEEECCCCceeeeeee
Q 005342          650 IHLL-SI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       650 ~~l~-sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ++++ ++ .|+.|++||+.+++.++.++.
T Consensus       256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~~~  284 (391)
T 1l0q_A          256 KKVYVALSFXNTVSVIDTATNTITATMAV  284 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence            9885 44 699999999999999888865

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.1e-26  Score=236.52  Aligned_cols=256  Identities=14%  Similarity=0.089  Sum_probs=182.3

Q ss_pred             CcccccccCcc---ceeEEEeecCcceeeeEEEEccCCCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCC
Q 005342          307 DKLKFPSMDKS---RLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDS  383 (701)
Q Consensus       307 ~~i~iwd~~~~---~~~~~l~~h~~~v~~~~l~fspds~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~  383 (701)
                      ..|++|+...+   +++++++.|...|.  .+.|+||..+ -+.         +..            |+          
T Consensus        63 ~~v~lw~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~-~~~---------~~~------------~~----------  108 (356)
T 2w18_A           63 DVVSLWKALDAWQWEKLYTWHFAEVPVL--QIVPVPDVYN-LVC---------VAL------------GN----------  108 (356)
T ss_dssp             SEEEEEEESSSSBEEEEEEEECCSSCEE--EECCCTTCCS-CEE---------EEE------------CS----------
T ss_pred             ceEEEcccCCCccceeeEEEeccCceeE--EEEEcCcccc-eee---------eee------------cc----------
Confidence            67999999998   99999999999999  9999997332 111         111            11          


Q ss_pred             CCCccccCCCc-eEEEEEcCC----CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342          384 NDSSCFNDNNQ-SRESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       384 ~~~~~l~~h~~-V~~l~~spd----g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s  458 (701)
                             -|.. |++++++||    ++.+++++.+  +.+|++.    +++...-  ...+|...|..++++|+|+.+.+
T Consensus       109 -------~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~----~g~lv~s--s~~g~d~~V~~~~~s~dG~~~~s  173 (356)
T 2w18_A          109 -------LEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT----KRRLVSS--SGTLSDQQVEVMTFAEDGGGKEN  173 (356)
T ss_dssp             -------SSEEEEEEECC------CCEEEEEEEEE--EEEEEET----TTEEEEE--ESSSTTCEEEEEEECTTSCEEEE
T ss_pred             -------ccccceEEEEECCCccccccEEEeCCCe--EEEEecC----CCcEEEe--cccCCCCcEEEEEECCCCceeee
Confidence                   1233 899999999    9999998854  6778774    4432221  11235555555555555554332


Q ss_pred             EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----CCEEEEEe-CCeEEEEeC
Q 005342          459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSL  532 (701)
Q Consensus       459 ~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~~~l~s~s-dg~I~iwd~  532 (701)
                      .                                           ..|...+..++|+     +..|++++ |++|++||+
T Consensus       174 ~-------------------------------------------~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl  210 (356)
T 2w18_A          174 Q-------------------------------------------FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL  210 (356)
T ss_dssp             E-------------------------------------------EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred             e-------------------------------------------ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence            1                                           1355556666665     58999999 999999999


Q ss_pred             CCCcEEEEecCCC---CCeEEEEEcCCC-eE------------EEEeCCCcEEEEeCCCCceEEee-----cCCCCCeEE
Q 005342          533 ETFQTLATFANPP---PIATYFILLPQD-LF------------AFGFDDSSILVHCPCTKKTKAKL-----KGHQNRITC  591 (701)
Q Consensus       533 ~~~~~~~~~~~~~---~~i~~l~~spdg-~l------------~~gs~dg~I~iwd~~~~~~~~~l-----~~h~~~V~~  591 (701)
                      ++++.++++.+|.   ..+.+++|+|+| ++            ++|+.|++|++||..+++.+..+     .||...+.+
T Consensus       211 ~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~ls  290 (356)
T 2w18_A          211 KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLE  290 (356)
T ss_dssp             TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEE
T ss_pred             CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEc
Confidence            9999999998654   357788999999 65            67889999999999999887765     477766554


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCC-eEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI-VNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~-v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      ..+  ++.++|+++.|++|+|||+.+|+..  ..+.    +|.   .. +.+++|||||++|++| .|++|+|||+
T Consensus       291 g~~--sg~~lASgS~DgTIkIWDl~tGk~l--~tL~----gH~---~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          291 GDV--KDHCAAAILTSGTIAIWDLLLGQCT--ALLP----PVS---DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEE--ETTEEEEEETTSCEEEEETTTCSEE--EEEC----CC-----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             ccc--CCCEEEEEcCCCcEEEEECCCCcEE--EEec----CCC---CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            444  4889999999999999999998633  2333    453   44 4569999999999997 8999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=2.4e-26  Score=249.92  Aligned_cols=257  Identities=10%  Similarity=0.115  Sum_probs=201.1

Q ss_pred             EEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342          321 SLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN  392 (701)
Q Consensus       321 ~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h  392 (701)
                      .....|.+.|.  +++|+|+        +.|+.|++||+.+......          ..+...         ....+.+|
T Consensus       122 ~~~~~h~~~v~--~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~----------~~~~~~---------~~~~~~~h  180 (430)
T 2xyi_A          122 EIKINHEGEVN--RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE----------PSGECQ---------PDLRLRGH  180 (430)
T ss_dssp             EEEEEESSCCS--EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC----------TTCCCC---------CSEEEECC
T ss_pred             EEEEcCCCcEE--EEEECCCCCcEEEEECCCCcEEEEECCCcccccC----------ccccCC---------CcEEecCC
Confidence            45678999999  9999996        7899999999976422111          000000         12225688


Q ss_pred             Cc-eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcEEEEe
Q 005342          393 NQ-SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWK  469 (701)
Q Consensus       393 ~~-V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd  469 (701)
                      .. |.+++|+|++. +|++|+.||.|++|++.................+|...|.+++|+| ++..+++++.||.|++||
T Consensus       181 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD  260 (430)
T ss_dssp             SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEE
Confidence            88 99999999999 9999999999999999742111111110112346889999999999 678899999999999998


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EEEEEe-CCeEEEEeCCC-CcEEEEecCC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLET-FQTLATFANP  544 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l~s~s-dg~I~iwd~~~-~~~~~~~~~~  544 (701)
                      ++...                  ....... + ..|...|++++|+  +. ++++|+ ||.|++||+++ +..+..+.+|
T Consensus       261 ~~~~~------------------~~~~~~~-~-~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h  320 (430)
T 2xyi_A          261 TRNNN------------------TSKPSHT-V-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH  320 (430)
T ss_dssp             TTCSC------------------SSSCSEE-E-ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred             CCCCC------------------CCcceeE-e-ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence            74321                  0111111 2 3688899999999  55 688888 99999999988 5678888899


Q ss_pred             CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC--------------CceEEeecCCCCCeEEEEEecCCC-EEEEEeCC
Q 005342          545 PPIATYFILLPQD--LFAFGFDDSSILVHCPCT--------------KKTKAKLKGHQNRITCLAYSLSLN-VLVSSGAD  607 (701)
Q Consensus       545 ~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~--------------~~~~~~l~~h~~~V~~v~~spdg~-~l~s~s~D  607 (701)
                      ...|++++|+|++  ++++++.||.|++||+..              .+.+..+.+|...|++++|+|+++ ++++++.|
T Consensus       321 ~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d  400 (430)
T 2xyi_A          321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED  400 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC
Confidence            9999999999999  799999999999999987              367778889999999999999999 99999999


Q ss_pred             CeEEEEECCCC
Q 005342          608 AQLCVWDAVGW  618 (701)
Q Consensus       608 ~~I~vwd~~~g  618 (701)
                      |.|++|++..+
T Consensus       401 g~i~iw~~~~~  411 (430)
T 2xyi_A          401 NIMQVWQMAEN  411 (430)
T ss_dssp             SEEEEEEECHH
T ss_pred             CCEEEeEcccc
Confidence            99999999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=3.7e-25  Score=236.83  Aligned_cols=250  Identities=13%  Similarity=0.085  Sum_probs=201.7

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS  378 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  378 (701)
                      +.|++||+.+++++..+..|.. +.  +++|+|+        +.|++|++||+.+++....+          .       
T Consensus        12 ~~v~v~d~~~~~~~~~~~~~~~-~~--~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~----------~-------   71 (391)
T 1l0q_A           12 DNISVIDVTSNKVTATIPVGSN-PM--GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV----------P-------   71 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSS-EE--EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE----------E-------
T ss_pred             CEEEEEECCCCeEEEEeecCCC-cc--eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE----------E-------
Confidence            7899999999999999988765 77  9999999        57999999999998877662          1       


Q ss_pred             cCCCCCCCccccCCCceEEEEEcCCCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE-
Q 005342          379 SGDDSNDSSCFNDNNQSRESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-  456 (701)
Q Consensus       379 ~~D~~~~~~~l~~h~~V~~l~~spdg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l-  456 (701)
                                  .|..+.+++|+|+|++++ +++.++.|++||+.    +++......    +...+.+++|+|+|+.+ 
T Consensus        72 ------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~----~~~~~~~~~----~~~~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           72 ------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT----SNTVAGTVK----TGKSPLGLALSPDGKKLY  131 (391)
T ss_dssp             ------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT----TTEEEEEEE----CSSSEEEEEECTTSSEEE
T ss_pred             ------------CCCCccceEECCCCCEEEEEECCCCEEEEEECC----CCeEEEEEe----CCCCcceEEECCCCCEEE
Confidence                        222488999999999875 55577999999998    555443221    34578999999999987 


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE-EEEe-CCeEEEEeC
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSL  532 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l-~s~s-dg~I~iwd~  532 (701)
                      ++++.++.|++||+                     .+++.... +.  ....+.+++|+  ++.+ ++++ ++.|++||+
T Consensus       132 ~~~~~~~~v~~~d~---------------------~~~~~~~~-~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~  187 (391)
T 1l0q_A          132 VTNNGDKTVSVINT---------------------VTKAVINT-VS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (391)
T ss_dssp             EEETTTTEEEEEET---------------------TTTEEEEE-EE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCEEEEEEC---------------------CCCcEEEE-Ee--cCCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            56677999999965                     45554432 21  23467899999  7676 4555 799999999


Q ss_pred             CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEE-EEEeCC
Q 005342          533 ETFQTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGAD  607 (701)
Q Consensus       533 ~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs---~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l-~s~s~D  607 (701)
                      ++++....+. +...+.+++|+|+| ++++++   .++.|++||+.+++.+..+..|. .+.+++|+|+|+++ ++++.|
T Consensus       188 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d  265 (391)
T 1l0q_A          188 VTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFX  265 (391)
T ss_dssp             TTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTT
T ss_pred             CCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCC
Confidence            9998888776 55678999999999 777777   68999999999999998888765 47899999999977 677889


Q ss_pred             CeEEEEECCCCeeee
Q 005342          608 AQLCVWDAVGWKKLC  622 (701)
Q Consensus       608 ~~I~vwd~~~g~~~~  622 (701)
                      +.|++||+.+++...
T Consensus       266 ~~v~v~d~~~~~~~~  280 (391)
T 1l0q_A          266 NTVSVIDTATNTITA  280 (391)
T ss_dssp             TEEEEEETTTTEEEE
T ss_pred             CEEEEEECCCCcEEE
Confidence            999999999986543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=2.2e-26  Score=243.44  Aligned_cols=234  Identities=12%  Similarity=0.128  Sum_probs=181.3

Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE-EEECCCcEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTATHKL  467 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg~i~v  467 (701)
                      .+|.. |++++|+|||++|++|+.++ +++|++.    ++.... ..    +...+..+.+.++++.++ +++.|+.|++
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~----~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~d~~v~i   85 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVH----PVAHIM-SQ----EMRHLSKVRMLHRTNYVAFVTGVKEVVHI   85 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE-EEEEEET----TEEEEE-EE----ECSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecC----Ccceee-ee----ecCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence            57888 99999999999999998875 7899987    443322 11    123577888999988874 5666899999


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCCCC-cEEEEecCCCC
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETF-QTLATFANPPP  546 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~-~~~~~~~~~~~  546 (701)
                      ||.                     .+++.+.. +  .+...|.+++++.+.++++.|+.|++||+.++ +.+..+..   
T Consensus        86 Wd~---------------------~~~~~~~~-~--~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---  138 (355)
T 3vu4_A           86 WDD---------------------VKKQDVSR-I--KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---  138 (355)
T ss_dssp             EET---------------------TTTEEEEE-E--ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---
T ss_pred             EEC---------------------CCCcEEEE-E--ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---
Confidence            955                     55554432 2  25668999999966777777999999999988 66666553   


Q ss_pred             CeEEEEEcCCC-eEEE-EeCCCcEEEEeCCCCc----------------eEEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 005342          547 IATYFILLPQD-LFAF-GFDDSSILVHCPCTKK----------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADA  608 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~-gs~dg~I~iwd~~~~~----------------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~  608 (701)
                      +...+++++ . +.++ |+.||.|++||+.++.                .+..+.+|.+.|++++|+|+|++||+|+.|+
T Consensus       139 ~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~  217 (355)
T 3vu4_A          139 FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG  217 (355)
T ss_dssp             EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence            445667777 5 3333 7899999999999865                2678899999999999999999999999999


Q ss_pred             e-EEEEECCCCeeeeeeeeeeccCC-CCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342          609 Q-LCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN  669 (701)
Q Consensus       609 ~-I~vwd~~~g~~~~~~~l~~~~~~-~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~  669 (701)
                      + |++||+++++..     ..+..+ |.   ..|++++|+|+|++|+++ .|++|+|||+.++.
T Consensus       218 ~~v~iwd~~~~~~~-----~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          218 TIIRVFKTEDGVLV-----REFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             SEEEEEETTTCCEE-----EEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             CEEEEEECCCCcEE-----EEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            8 999999997533     224433 65   899999999999999996 79999999997654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.7e-26  Score=247.87  Aligned_cols=240  Identities=9%  Similarity=0.004  Sum_probs=165.4

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE--eecCCCCCCCCEEEEEEec--------CCCEEEEE
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT--LLLPDNSFGGRVVRLIYSH--------SGDFLVAL  459 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~--l~~~~~~~~~~v~~l~~sp--------dg~~l~s~  459 (701)
                      .|.. +....+++++.++++|+.|++|++||..    .+.+..  ......+|.+.|.+++|+|        ||++|++|
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~----~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~  162 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITK----NETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV  162 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEE----TTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECC----CCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence            4555 5566778889999999999999999997    554332  1235678999999999998        89999999


Q ss_pred             ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C-CEEEEEe-CCeEEEEeCCCC
Q 005342          460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETF  535 (701)
Q Consensus       460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~-~~l~s~s-dg~I~iwd~~~~  535 (701)
                      +.|++|++||+                     .++..... + ..|..+|.+++|+  + .+|++++ ||.|++||++++
T Consensus       163 s~D~tv~~Wd~---------------------~~~~~~~~-~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~  219 (393)
T 4gq1_A          163 GDDCTLIIWRL---------------------TDEGPILA-G-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN  219 (393)
T ss_dssp             ETTSEEEEEEE---------------------ETTEEEEE-E-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred             ECCCeEEEEEC---------------------CCCceeee-e-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence            99999999976                     33332221 1 2577899999999  4 4789998 999999999887


Q ss_pred             cEEEEe-------------------------cCCCCCeEEEEEc-CCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCC
Q 005342          536 QTLATF-------------------------ANPPPIATYFILL-PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR  588 (701)
Q Consensus       536 ~~~~~~-------------------------~~~~~~i~~l~~s-pdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~  588 (701)
                      +.....                         .+|...+.++.|+ |+| .+++++.|+++++||+.+++....+.+|...
T Consensus       220 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~  299 (393)
T 4gq1_A          220 LSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK  299 (393)
T ss_dssp             C----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------
T ss_pred             cccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc
Confidence            643322                         2566778889887 788 9999999999999999988776666665544


Q ss_pred             eEEEE------------------Eec--CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342          589 ITCLA------------------YSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       589 V~~v~------------------~sp--dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd  648 (701)
                      +..+.                  |+|  ++.++++|+.||+|++||+.+++...  .   .. +|.   .+|++++||||
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~--~---~~-~~~---~~V~svafspd  370 (393)
T 4gq1_A          300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS--I---PI-QLG---MPIVDFCWHQD  370 (393)
T ss_dssp             ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE--E---EE-ECS---SCEEEEEECTT
T ss_pred             cccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE--E---ec-CCC---CcEEEEEEcCC
Confidence            44433                  333  34477889999999999999985332  1   11 333   88999999999


Q ss_pred             CCEEEEEecCeEEEEECC
Q 005342          649 QIHLLSIHEGQIDVYEAP  666 (701)
Q Consensus       649 g~~l~sg~Dg~I~iwd~~  666 (701)
                      |++||++.++.+.+|.+.
T Consensus       371 G~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          371 GSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             SSEEEEEESSEEEEEEEG
T ss_pred             CCEEEEEeCCCeEEEEEe
Confidence            999999888888888763

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.7e-27  Score=271.83  Aligned_cols=241  Identities=11%  Similarity=0.089  Sum_probs=194.3

Q ss_pred             eEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCc--cccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          320 LSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVS--NLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       320 ~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      ...+.+|.+.|.  +++|+|+       +.||+|++||+.++.  ....                             +.
T Consensus         2 ~~~l~gH~~~V~--~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~-----------------------------l~   50 (753)
T 3jro_A            2 VVIANAHNELIH--DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT-----------------------------LT   50 (753)
T ss_dssp             ------CCCCEE--EECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEE-----------------------------EC
T ss_pred             eeecccCcceeE--EEEECCCCCeEEEEECCCcEEEEecCCCCCcccee-----------------------------cc
Confidence            346789999999  9999999       789999999998443  2322                             35


Q ss_pred             CCCc-eEEEEEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcE
Q 005342          391 DNNQ-SRESTSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATH  465 (701)
Q Consensus       391 ~h~~-V~~l~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i  465 (701)
                      +|.. |++++|+|+  +++|++|+.||.|++||+.    .+....+. ...+|...|.+++|+|+  |+.+++|+.||.|
T Consensus        51 ~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~----~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  125 (753)
T 3jro_A           51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE----NGRWSQIA-VHAVHSASVNSVQWAPHEYGPLLLVASSDGKV  125 (753)
T ss_dssp             CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE----TTEEEEEE-EECCCSSCEEEEEECCGGGCSEEEEEETTSEE
T ss_pred             CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC----CCcccccc-cccCCCCCeEEEEECCCCCCCEEEEEeCCCcE
Confidence            7777 999999988  9999999999999999998    55422212 23458899999999999  9999999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-C--------------CEEEEEe-CCeEEE
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G--------------SHLFSAS-GGKISI  529 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~--------------~~l~s~s-dg~I~i  529 (701)
                      ++||+.....                  .....  + .+|...|.+++|+ .              ..+++|+ ||.|++
T Consensus       126 ~vwdl~~~~~------------------~~~~~--~-~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~i  184 (753)
T 3jro_A          126 SVVEFKENGT------------------TSPII--I-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI  184 (753)
T ss_dssp             EEEECCSSSC------------------CCCEE--E-ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEE
T ss_pred             EEEEeecCCC------------------cceeE--e-ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEE
Confidence            9998744310                  01111  1 3678889999987 2              5788888 999999


Q ss_pred             EeCCCC----cEEEEecCCCCCeEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCc-----eEEeecCCCCCeEEEEEec
Q 005342          530 FSLETF----QTLATFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKK-----TKAKLKGHQNRITCLAYSL  596 (701)
Q Consensus       530 wd~~~~----~~~~~~~~~~~~i~~l~~spd---g-~l~~gs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~v~~sp  596 (701)
                      ||++++    .....+.+|...|++++|+|+   + ++++|+.||.|++||+++++     ......+|.+.|++++|+|
T Consensus       185 wd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp  264 (753)
T 3jro_A          185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL  264 (753)
T ss_dssp             EEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT
T ss_pred             EeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC
Confidence            999876    566778899999999999999   9 99999999999999998864     3344456889999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCC
Q 005342          597 SLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       597 dg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +|+++++|+.||.|++||+..
T Consensus       265 dg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          265 SGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             TTCCEEEECSSSCEECCBCCS
T ss_pred             CCCEEEEEcCCCEEEEEecCC
Confidence            999999999999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.5e-26  Score=241.78  Aligned_cols=254  Identities=8%  Similarity=0.052  Sum_probs=191.1

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK  420 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~  420 (701)
                      +.|++|++||+.+++.+..+          .                    ...|.++.|+|+   +++|+.|++|++|+
T Consensus        55 ~~Dg~v~iwd~~~~~~~~~~----------~--------------------~~~v~~~~~~~~---~~s~s~D~~i~~w~  101 (343)
T 3lrv_A           55 CEDGALHFTQLKDSKTITTI----------T--------------------TPNPRTGGEHPA---IISRGPCNRLLLLY  101 (343)
T ss_dssp             EETTEEEEEEESSSSCEEEE----------E--------------------EECCCTTCCCCS---EEEECSTTEEEEEE
T ss_pred             CCCCcEEEEECCCCcEEEEE----------e--------------------cCCceeeeeCCc---eEEecCCCeEEEEE
Confidence            56999999999999887763          1                    011556678888   99999999999998


Q ss_pred             ccccC-----CCCc-eeEeecCCCCCCCCEEEEEEec--CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC
Q 005342          421 LQLIN-----EPSE-CRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS  492 (701)
Q Consensus       421 ~~~~~-----~~~~-~~~l~~~~~~~~~~v~~l~~sp--dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~  492 (701)
                      .....     ..++ ...+.   ..|...|.+++|+|  +++++++++.||.|++||+                     .
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~---------------------~  157 (343)
T 3lrv_A          102 PGNQITILDSKTNKVLREIE---VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY---------------------E  157 (343)
T ss_dssp             TTTEEEEEETTTCCEEEEEE---CCCSSCEEEEECCC---CCEEEEEETTCCEEEEES---------------------S
T ss_pred             ccCceEEeecCCcceeEEee---cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC---------------------C
Confidence            75210     1222 12211   24668899999999  9999999999999999966                     4


Q ss_pred             CCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEE-EEecC-CCCCeEEEEEcCCC-eEEEEeCCC
Q 005342          493 SKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-ATFAN-PPPIATYFILLPQD-LFAFGFDDS  566 (701)
Q Consensus       493 ~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~-~~~~~-~~~~i~~l~~spdg-~l~~gs~dg  566 (701)
                      +++.... ....+...+.+++|+  |.++++|+ ||.|++||+++++.+ ..+.+ |..+|++++|+|+| ++++++. +
T Consensus       158 ~~~~~~~-~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~  235 (343)
T 3lrv_A          158 DDSQYIV-HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q  235 (343)
T ss_dssp             SSCEEEE-ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S
T ss_pred             CCcEEEE-EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C
Confidence            4443321 223456679999999  88999998 999999999999887 78887 99999999999999 9999994 5


Q ss_pred             cEEEEeCCCCceEEeecC---CCCCeE--EEEEecCCCEEEEEeC-CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342          567 SILVHCPCTKKTKAKLKG---HQNRIT--CLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV  640 (701)
Q Consensus       567 ~I~iwd~~~~~~~~~l~~---h~~~V~--~v~~spdg~~l~s~s~-D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v  640 (701)
                      .|++||+++++.+..+..   |...+.  +++|+|+|++|++++. |+.|++|++..+...    .. .        .++
T Consensus       236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~----~~-~--------~~~  302 (343)
T 3lrv_A          236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN----WT-K--------DEE  302 (343)
T ss_dssp             BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS----EE-E--------EEE
T ss_pred             eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc----eE-e--------cCc
Confidence            999999999877665554   444444  6999999999999998 999999999765321    11 0        346


Q ss_pred             EEEEEcC---CCCEEEEE-ecCeEEEEECC
Q 005342          641 NHIQFHP---DQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       641 ~~v~~sp---dg~~l~sg-~Dg~I~iwd~~  666 (701)
                      ..+.|+|   +++.++++ .|+.+.++-..
T Consensus       303 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          303 SALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             EECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             eeEecCccccccceeEEEecCCceEEEEec
Confidence            7788888   78888875 89988887653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=1e-26  Score=249.62  Aligned_cols=242  Identities=8%  Similarity=-0.006  Sum_probs=165.0

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcC--------CCCeEEEEc
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLP--------DADSAVCAK  411 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~sp--------dg~~l~s~s  411 (701)
                      +.|++|+|||+.++.+....                        ....+.+|.+ |++++|+|        ||++||+|+
T Consensus       108 ~~d~~v~lw~~~~~~~~~~~------------------------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A          108 CQDNTVRLIITKNETIITQH------------------------VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             ETTSCEEEEEEETTEEEEEE------------------------EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             eCCCcEEEEECCCCccceee------------------------eecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence            78999999999988765431                        1223578999 99999998        899999999


Q ss_pred             CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEEecCCCCccc---cccccce-ee
Q 005342          412 SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSL---EEENVNM-ES  486 (701)
Q Consensus       412 ~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~~---g~~~~~~-~i  486 (701)
                      .|++|++||+.    .+......   ..|...|.+++|+|++. +|++++.||+|++||+.++....   ....... .+
T Consensus       164 ~D~tv~~Wd~~----~~~~~~~~---~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~  236 (393)
T 4gq1_A          164 DDCTLIIWRLT----DEGPILAG---YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL  236 (393)
T ss_dssp             TTSEEEEEEEE----TTEEEEEE---EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred             CCCeEEEEECC----CCceeeee---cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence            99999999997    33322211   14778999999999875 79999999999999997765411   0000000 00


Q ss_pred             EEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEE------------
Q 005342          487 QLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY------------  550 (701)
Q Consensus       487 ~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~------------  550 (701)
                      ..++.......  ....+|...+.++.|+   +..+++++ |+.+++||+.+++....+..+...+..            
T Consensus       237 ~s~~~~~~~~~--~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (393)
T 4gq1_A          237 LTLNTLPLVNT--CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL  314 (393)
T ss_dssp             EEEESGGGC--------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred             Eecccccceee--eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence            00011100000  0113688899999987   88999999 999999999887766655544333322            


Q ss_pred             ------EEEcC--CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342          551 ------FILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       551 ------l~~sp--dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~  616 (701)
                            ..++|  ++ ++++|+.||.|++||+.+++....+.+|..+|++++|+|||++||++++|| +.+|.+.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence                  23333  33 778899999999999999998888888999999999999999999999776 5666543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=4.6e-24  Score=238.01  Aligned_cols=305  Identities=13%  Similarity=0.116  Sum_probs=230.3

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEec--cCCccccccccccCCCCCCCCCCccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDF--PTVSNLRYASSILTDKPNQEGRPLDA  377 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (701)
                      ++|.+||..+++++.++..+.. +.  +++|+||       +.|++|++||+  .+++++..+                 
T Consensus       159 ~~V~v~D~~t~~~~~~i~~g~~-~~--~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-----------------  218 (543)
T 1nir_A          159 GQIALVDGDSKKIVKVIDTGYA-VH--ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-----------------  218 (543)
T ss_dssp             TEEEEEETTTCCEEEEEECSTT-EE--EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-----------------
T ss_pred             CeEEEEECCCceEEEEEecCcc-cc--eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-----------------
Confidence            7899999999999999985444 77  9999999       67799999999  777766652                 


Q ss_pred             ccCCCCCCCccccCCCceEEEEEcC----CCCeEEEEc-CCCcEEEEeccccCCCCceeEeecCCCC--------C-CCC
Q 005342          378 SSGDDSNDSSCFNDNNQSRESTSLP----DADSAVCAK-SLEKSVNLKLQLINEPSECRTLLLPDNS--------F-GGR  443 (701)
Q Consensus       378 s~~D~~~~~~~l~~h~~V~~l~~sp----dg~~l~s~s-~d~~v~iw~~~~~~~~~~~~~l~~~~~~--------~-~~~  443 (701)
                                  ..+..+..++|+|    ||+++++++ .+++|.+||..    ++++.... +..+        | ...
T Consensus       219 ------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~----t~~~~~~i-~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          219 ------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE----TLEPKQIV-STRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             ------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT----TCCEEEEE-ECCEECSSSCCEESCCC
T ss_pred             ------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc----ccccceee-cccCcccCccccccCCc
Confidence                        1122278999999    999999988 48999999987    55543311 1110        2 337


Q ss_pred             EEEEEEecCCCEEE-EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEE
Q 005342          444 VVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF  520 (701)
Q Consensus       444 v~~l~~spdg~~l~-s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~  520 (701)
                      +.++.++|++..++ +...++.|.+||..+..                   ...+. .+  .+...+.+++|+  |++++
T Consensus       282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~-------------------~l~~~-~i--~~~~~~~~~~~spdg~~l~  339 (543)
T 1nir_A          282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDID-------------------NLTVT-SI--GAAPFLHDGGWDSSHRYFM  339 (543)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEECTTSS-------------------SCEEE-EE--ECCSSCCCEEECTTSCEEE
T ss_pred             eEEEEECCCCCEEEEEECCCCeEEEEEecCCC-------------------cceeE-Ee--ccCcCccCceECCCCCEEE
Confidence            99999999887655 44558999999763321                   00111 12  234567788999  88776


Q ss_pred             EEe--CCeEEEEeCCCCcEEEEecC----CCCCeEEEEEcCCC--eEEEEe-CCCcEEEEeCCC-------CceEEeecC
Q 005342          521 SAS--GGKISIFSLETFQTLATFAN----PPPIATYFILLPQD--LFAFGF-DDSSILVHCPCT-------KKTKAKLKG  584 (701)
Q Consensus       521 s~s--dg~I~iwd~~~~~~~~~~~~----~~~~i~~l~~spdg--~l~~gs-~dg~I~iwd~~~-------~~~~~~l~~  584 (701)
                      +++  +++|.+||..+++++..+..    |......+ ++|++  .++++. .|++|.+||..+       .++++++.+
T Consensus       340 va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~  418 (543)
T 1nir_A          340 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG  418 (543)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred             EEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc
Confidence            654  79999999999999888874    44333333 57885  667765 689999999998       899999999


Q ss_pred             CCCCeEEEEEecCCCEEEEEe-------CCCeEEEEECCCCeeeeeeeee--e---ccCCCCCCCCCeEEEEEcCCCCEE
Q 005342          585 HQNRITCLAYSLSLNVLVSSG-------ADAQLCVWDAVGWKKLCSKFLH--S---FQTGLVPETTIVNHIQFHPDQIHL  652 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l~s~s-------~D~~I~vwd~~~g~~~~~~~l~--~---~~~~~~~~~~~v~~v~~spdg~~l  652 (701)
                      |.+.+..++++|+|++|++++       .+++|.|||+.+++... ..+.  .   +. .+.   ..+..+.|+|||+.+
T Consensus       419 ~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~-~~~~v~~~~~~~-~~~---~~~~~~~~~~~g~~~  493 (543)
T 1nir_A          419 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY-QVLPIAEWADLG-EGA---KRVVQPEYNKRGDEV  493 (543)
T ss_dssp             SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC-EEECHHHHHCCC-SSC---CEEEEEEECSSSSEE
T ss_pred             CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCe-EEeechhhcccC-CCC---CceEeccCCCCCCEE
Confidence            988889999999999999887       27799999999986431 2221  0   11 222   789999999999999


Q ss_pred             EEE-e-----cCeEEEEECCCCceeeeeee
Q 005342          653 LSI-H-----EGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       653 ~sg-~-----Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      +++ .     |+.|.|||..|++++++++.
T Consensus       494 ~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  523 (543)
T 1nir_A          494 WFSVWNGKNDSSALVVVDDKTLKLKAVVKD  523 (543)
T ss_dssp             EEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             EEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence            875 2     68999999999999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=1.6e-24  Score=235.19  Aligned_cols=254  Identities=11%  Similarity=0.013  Sum_probs=204.1

Q ss_pred             ceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeec--CCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342          394 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL--PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ  471 (701)
Q Consensus       394 ~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~--~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  471 (701)
                      .+.+++|+|++.++++++.++.|++||+.    +++......  ...+|...|.+++|+|+|+.+++++.|+.|++||+ 
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~-  198 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDIN----SGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL-  198 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETT----TCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET-
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECC----CCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC-
Confidence            36689999988888999999999999997    555443211  12357889999999999999999999999999965 


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEE-EEe-CCeEEEEeCCCCcEEEEecCCCCC
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF-SAS-GGKISIFSLETFQTLATFANPPPI  547 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~-s~s-dg~I~iwd~~~~~~~~~~~~~~~~  547 (701)
                                          .+++.... + ..|...+.+++|+  ++.++ +++ |+.|++||+++++.+..+.. ...
T Consensus       199 --------------------~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~  255 (433)
T 3bws_A          199 --------------------KTLAYKAT-V-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGL  255 (433)
T ss_dssp             --------------------TTCCEEEE-E-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSE
T ss_pred             --------------------CCceEEEE-E-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCC
Confidence                                44444332 2 2577889999999  77664 554 89999999999998888875 456


Q ss_pred             eEEEEEcCCC-eEEEEe--------CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCE-EEEEeCCCeEEEEECCC
Q 005342          548 ATYFILLPQD-LFAFGF--------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-LVSSGADAQLCVWDAVG  617 (701)
Q Consensus       548 i~~l~~spdg-~l~~gs--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~-l~s~s~D~~I~vwd~~~  617 (701)
                      +.+++|+|+| .+++++        .||.|++||+.+++.+..+. |...+.+++|+|+++. +++++.|+.|++||+.+
T Consensus       256 ~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~  334 (433)
T 3bws_A          256 PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE  334 (433)
T ss_dssp             EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence            8999999999 888877        58899999999998877663 6668999999999975 46778999999999998


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-e---------------cCeEEEEECCCCceeeeeee---ee
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H---------------EGQIDVYEAPTLNHTSQVLL---IS  678 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~---------------Dg~I~iwd~~~g~~~~~l~~---i~  678 (701)
                      ++...  .   +. ..    ..+.+++|+|+|++++++ .               ||.|++||+.+++.+..+..   +.
T Consensus       335 ~~~~~--~---~~-~~----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~  404 (433)
T 3bws_A          335 KKVQK--S---IP-VF----DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPT  404 (433)
T ss_dssp             TEEEE--E---EE-CS----SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEE
T ss_pred             CcEEE--E---ec-CC----CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCc
Confidence            75432  2   21 22    678999999999988875 3               46999999999999998877   89


Q ss_pred             EEEEEeeE
Q 005342          679 HIMFVQIV  686 (701)
Q Consensus       679 ~~~fs~~~  686 (701)
                      +++|+|+.
T Consensus       405 ~~~~s~dg  412 (433)
T 3bws_A          405 GLDVSPDN  412 (433)
T ss_dssp             EEEECTTS
T ss_pred             eEEEcCCC
Confidence            99999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=7.8e-24  Score=228.74  Aligned_cols=237  Identities=11%  Similarity=0.047  Sum_probs=182.0

Q ss_pred             CCeEEEEcCC------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC---cEEEEecCCCC
Q 005342          404 ADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA---THKLWKWQSNK  474 (701)
Q Consensus       404 g~~l~s~s~d------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~i~vwd~~~~~  474 (701)
                      +..++.++.+      +.|++||+.    .+....+.    .|...+.+++|+|||++|++++.++   .|++||+    
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~----g~~~~~l~----~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~----  210 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYD----GYNQFVVH----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL----  210 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETT----SCSCEEEE----EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----
T ss_pred             CCEEEEEEecCCCCccceEEEEcCC----CCCCEEEe----CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEEC----
Confidence            5666666554      799999996    44444433    3678999999999999999999875   8888855    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEE-EEe-CC--eEEEEeCCCCcEEEEecCCCCCe
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF-SAS-GG--KISIFSLETFQTLATFANPPPIA  548 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~-s~s-dg--~I~iwd~~~~~~~~~~~~~~~~i  548 (701)
                                       .+++...  + ..|...+.+++|+  |+.|+ +++ ++  .|++||+.+++. ..+..+...+
T Consensus       211 -----------------~tg~~~~--l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~  269 (415)
T 2hqs_A          211 -----------------ANGAVRQ--V-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNN  269 (415)
T ss_dssp             -----------------TTCCEEE--E-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCE
T ss_pred             -----------------CCCcEEE--e-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcc
Confidence                             4555432  2 2466789999999  78777 555 54  599999988776 5667788889


Q ss_pred             EEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeee
Q 005342          549 TYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKL  621 (701)
Q Consensus       549 ~~l~~spdg-~l~~gs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~  621 (701)
                      .+++|+||| .|++++. ++  .|++||+.+++. ..+..|...+.+++|+|||++|++++.+   ..|++||+.+++. 
T Consensus       270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-  347 (415)
T 2hqs_A          270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-  347 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-
T ss_pred             cceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-
Confidence            999999999 8888776 44  788889988764 4455677789999999999999988764   5899999999753 


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC---eEEEEECCCCceeeeeee----eeEEEEEeeE
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG---QIDVYEAPTLNHTSQVLL----ISHIMFVQIV  686 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg---~I~iwd~~~g~~~~~l~~----i~~~~fs~~~  686 (701)
                        ..+.    .+    ..+.+++|+|||++|+++ .++   .|++||+. ++..+.+.+    |.+++|+|..
T Consensus       348 --~~l~----~~----~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          348 --QVLS----ST----FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             --EECC----CS----SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred             --EEec----CC----CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence              1222    22    468999999999999884 555   79999986 555666665    9999999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.6e-23  Score=226.21  Aligned_cols=266  Identities=12%  Similarity=0.048  Sum_probs=201.8

Q ss_pred             ccccccc--Ccccee--EEEeecCcceeeeEEEEcc---------------C---------CCC---CeEEEEeccCCcc
Q 005342          308 KLKFPSM--DKSRLL--SLIKQIMDWWVPYCINVMP---------------N---------ANN---ETISLKDFPTVSN  356 (701)
Q Consensus       308 ~i~iwd~--~~~~~~--~~l~~h~~~v~~~~l~fsp---------------d---------s~d---~~i~lWd~~~~~~  356 (701)
                      .+++||+  .+++++  ..+.+|...+.  .+++++               +         ..+   ++|++||+..+. 
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-  170 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLR--YAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-  170 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHH--HHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHH--HHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-
Confidence            7899999  999988  55888887776  555553               1         123   799999987433 


Q ss_pred             ccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCC---cEEEEeccccCCCCceeE
Q 005342          357 LRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLE---KSVNLKLQLINEPSECRT  432 (701)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~---~v~iw~~~~~~~~~~~~~  432 (701)
                      .+.                             +.+|.. |.+++|+|||+.|++++.++   .|++||+.    ++++..
T Consensus       171 ~~~-----------------------------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~----tg~~~~  217 (415)
T 2hqs_A          171 QFV-----------------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA----NGAVRQ  217 (415)
T ss_dssp             CEE-----------------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT----TCCEEE
T ss_pred             CEE-----------------------------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC----CCcEEE
Confidence            333                             235666 99999999999999999875   99999998    666555


Q ss_pred             eecCCCCCCCCEEEEEEecCCCEEE-EEECCCc--EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCe
Q 005342          433 LLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTAT--HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI  509 (701)
Q Consensus       433 l~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg~--i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v  509 (701)
                      +.    .+...+.+++|+|||++|+ +++.++.  |.+|                     |..+++...  + ..|...+
T Consensus       218 l~----~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~---------------------d~~~~~~~~--l-~~~~~~~  269 (415)
T 2hqs_A          218 VA----SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM---------------------DLASGQIRQ--V-TDGRSNN  269 (415)
T ss_dssp             EE----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE---------------------ETTTCCEEE--C-CCCSSCE
T ss_pred             ee----cCCCcccCEEEcCCCCEEEEEEecCCCceEEEE---------------------ECCCCCEEe--C-cCCCCcc
Confidence            43    2567899999999999888 5555665  6666                     555555432  3 3567789


Q ss_pred             EEEEec--CCEEEEEe-C-C--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceE
Q 005342          510 SCFALR--GSHLFSAS-G-G--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTK  579 (701)
Q Consensus       510 ~~l~~s--~~~l~s~s-d-g--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d---g~I~iwd~~~~~~~  579 (701)
                      .+++|+  |++|++++ + +  .|++||+.+++. ..+..+...+.+++|+|+| +|++++.+   +.|++||+.+++..
T Consensus       270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~  348 (415)
T 2hqs_A          270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  348 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred             cceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence            999999  88888777 3 4  788889988764 4455566788999999999 88777764   58999999988764


Q ss_pred             EeecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342          580 AKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  650 (701)
Q Consensus       580 ~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~  650 (701)
                       .+..|. .+.+++|+|||++|++++.|+   .|++||+.++.   ...   +. +|.   +.|.+++|+|.-.
T Consensus       349 -~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~---~~~---l~-~~~---~~v~~~~~~~~~~  410 (415)
T 2hqs_A          349 -VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KAR---LP-ATD---GQVKFPAWSPYLH  410 (415)
T ss_dssp             -ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC---EEE---CC-CSS---SEEEEEEECCCCC
T ss_pred             -EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc---EEE---ee-CCC---CCCcCCccccccc
Confidence             455564 899999999999999888877   89999998653   122   32 444   8899999999743

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=1.9e-23  Score=212.66  Aligned_cols=184  Identities=11%  Similarity=0.046  Sum_probs=136.2

Q ss_pred             CCCCeEEEEc--CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec---CCCEEEEEECCCcEEEEecCCCCcc
Q 005342          402 PDADSAVCAK--SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---SGDFLVALTQTATHKLWKWQSNKQS  476 (701)
Q Consensus       402 pdg~~l~s~s--~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp---dg~~l~s~s~dg~i~vwd~~~~~~~  476 (701)
                      ++|+.+.+++  .|+.|++|++..   .++...   ....|...+..++|+|   ++..|++++.|++|++||+      
T Consensus       143 ~~g~lv~ss~~g~d~~V~~~~~s~---dG~~~~---s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl------  210 (356)
T 2w18_A          143 TKRRLVSSSGTLSDQQVEVMTFAE---DGGGKE---NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL------  210 (356)
T ss_dssp             TTTEEEEEESSSTTCEEEEEEECT---TSCEEE---EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET------
T ss_pred             CCCcEEEecccCCCCcEEEEEECC---CCceee---eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC------
Confidence            5666666644  588888998852   344333   1124788889999999   7799999999999999955      


Q ss_pred             ccccccceeeEEeeCCCCeEEeecccCC--CCCCeEEEEec--CCEE------------EEEe-CCeEEEEeCCCCcEEE
Q 005342          477 LEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFALR--GSHL------------FSAS-GGKISIFSLETFQTLA  539 (701)
Q Consensus       477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~v~~l~~s--~~~l------------~s~s-dg~I~iwd~~~~~~~~  539 (701)
                                     .+|+++.. +..+  +...+.+++|+  |.++            ++|+ |++|++||..+++.+.
T Consensus       211 ---------------~TGk~l~t-L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~  274 (356)
T 2w18_A          211 ---------------KTGQLLKK-MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG  274 (356)
T ss_dssp             ---------------TTCCEEEE-EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred             ---------------CCCcEEEE-EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence                           56665443 3222  23366677788  5554            5677 8999999999998877


Q ss_pred             Ee-----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeE-EEEEecCCCEEEEEeCCCeEEE
Q 005342          540 TF-----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCV  612 (701)
Q Consensus       540 ~~-----~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~-~v~~spdg~~l~s~s~D~~I~v  612 (701)
                      .+     .+|...+.+..+  ++ .+++|+.|++|+|||+.+++.++++.+|...+. +++|||||++|+||+.|++|+|
T Consensus       275 v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIkl  352 (356)
T 2w18_A          275 VMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFV  352 (356)
T ss_dssp             EEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred             EEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEE
Confidence            65     356555444444  47 999999999999999999999999999987655 5899999999999999999999


Q ss_pred             EEC
Q 005342          613 WDA  615 (701)
Q Consensus       613 wd~  615 (701)
                      ||+
T Consensus       353 Wd~  355 (356)
T 2w18_A          353 YHY  355 (356)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            996

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=4.5e-22  Score=230.34  Aligned_cols=309  Identities=11%  Similarity=0.014  Sum_probs=210.8

Q ss_pred             ccccccCcccee-EEEeecC-----------------cceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccC
Q 005342          309 LKFPSMDKSRLL-SLIKQIM-----------------DWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILT  365 (701)
Q Consensus       309 i~iwd~~~~~~~-~~l~~h~-----------------~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~  365 (701)
                      | +||..+++.+ ..+..|.                 ..+.  +++||||     +.++++++||+.+++.....     
T Consensus        46 i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~--~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~-----  117 (706)
T 2z3z_A           46 L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSF--RTLDAGRGLVVLFTQGGLVGFDMLARKVTYLF-----  117 (706)
T ss_dssp             E-EEEC-------CEEEEHHHHHTTC-----------CCCE--EEEETTTTEEEEEETTEEEEEETTTTEEEEEE-----
T ss_pred             E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCce--eEEECCCCeEEEEECCEEEEEECCCCceEEcc-----
Confidence            7 9999999884 4444443                 3477  9999999     67799999999988765541     


Q ss_pred             CCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCC-----CceeEeecCCCC
Q 005342          366 DKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP-----SECRTLLLPDNS  439 (701)
Q Consensus       366 ~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~-----~~~~~l~~~~~~  439 (701)
                                               .+.. +.+++|||||+.|+++ .|+.|++|++.    +     ++...+..   .
T Consensus       118 -------------------------~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~----~~~~~~g~~~~~~~---~  164 (706)
T 2z3z_A          118 -------------------------DTNEETASLDFSPVGDRVAYV-RNHNLYIARGG----KLGEGMSRAIAVTI---D  164 (706)
T ss_dssp             -------------------------CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECB----CTTSCCCCCEESCS---C
T ss_pred             -------------------------CCcccccCCcCCCCCCEEEEE-ECCeEEEEecC----cccccCCCcEEecc---C
Confidence                                     2223 5678999999999995 67999999997    4     54444221   1


Q ss_pred             CCC--------------CEEEEEEecCCCEEEEEECC-CcEEEEe---cCCCCc--------cccccccceeeEEeeCCC
Q 005342          440 FGG--------------RVVRLIYSHSGDFLVALTQT-ATHKLWK---WQSNKQ--------SLEEENVNMESQLYQPSS  493 (701)
Q Consensus       440 ~~~--------------~v~~l~~spdg~~l~s~s~d-g~i~vwd---~~~~~~--------~~g~~~~~~~i~~~d~~~  493 (701)
                      +..              .+.+++|||||++|++++.| ..+..+.   ......        ..|.......+.+||..+
T Consensus       165 ~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~  244 (706)
T 2z3z_A          165 GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT  244 (706)
T ss_dssp             CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred             CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence            222              24789999999999998743 2111111   111100        112222334577888888


Q ss_pred             CeEEeecccCCCCCCeEEEEec--CCEEEEEe-CC-----eEEEEeCCCCcEEEEec--CCC---CCeEEEEEcC--CC-
Q 005342          494 KLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG-----KISIFSLETFQTLATFA--NPP---PIATYFILLP--QD-  557 (701)
Q Consensus       494 ~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg-----~I~iwd~~~~~~~~~~~--~~~---~~i~~l~~sp--dg-  557 (701)
                      ++.........|...+.+++|+  |+.|++++ ++     .|++||+.+++....+.  .+.   ..+.+++|+|  || 
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~  324 (706)
T 2z3z_A          245 GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ  324 (706)
T ss_dssp             TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE
T ss_pred             CceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE
Confidence            8755322222466789999999  88888876 64     89999999984333332  122   1246789999  99 


Q ss_pred             eEEEEeCCCcEEEEeCC-CCceEEeecCCCCCeEE-EEEecCCCEEEEEeC-CC----eEEEEECCCCeeeeeeeeeecc
Q 005342          558 LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITC-LAYSLSLNVLVSSGA-DA----QLCVWDAVGWKKLCSKFLHSFQ  630 (701)
Q Consensus       558 ~l~~gs~dg~I~iwd~~-~~~~~~~l~~h~~~V~~-v~~spdg~~l~s~s~-D~----~I~vwd~~~g~~~~~~~l~~~~  630 (701)
                      ++++++.|+.+++|++. ++..+..+.+|...+.+ ++|+|+|+.|+.++. ++    .|+.||..+++.   ..   +.
T Consensus       325 ~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~---l~  398 (706)
T 2z3z_A          325 FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT---KD---LT  398 (706)
T ss_dssp             EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC---EE---SC
T ss_pred             EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc---ee---cc
Confidence            99999999998898876 67777888888878877 799999997765554 44    788888887642   22   21


Q ss_pred             CCCCCCCCCeEEEEEcCCCCEEEEE-ec----CeEEEEECCCCc
Q 005342          631 TGLVPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYEAPTLN  669 (701)
Q Consensus       631 ~~~~~~~~~v~~v~~spdg~~l~sg-~D----g~I~iwd~~~g~  669 (701)
                        +.   ..+.+++|||||++++.+ .+    +.|++||+.+++
T Consensus       399 --~~---~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          399 --PE---SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             --CS---SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             --CC---CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence              22   668999999999998874 32    569999998887

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=7e-22  Score=220.35  Aligned_cols=282  Identities=11%  Similarity=0.077  Sum_probs=204.7

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK  420 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~  420 (701)
                      +.|++|.+||..+++++..+          ..                  +|. +..++|+|||++|++++.|+.|.+||
T Consensus       156 ~~d~~V~v~D~~t~~~~~~i----------~~------------------g~~-~~~v~~spdg~~l~v~~~d~~V~v~D  206 (543)
T 1nir_A          156 RDAGQIALVDGDSKKIVKVI----------DT------------------GYA-VHISRMSASGRYLLVIGRDARIDMID  206 (543)
T ss_dssp             GGGTEEEEEETTTCCEEEEE----------EC------------------STT-EEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             cCCCeEEEEECCCceEEEEE----------ec------------------Ccc-cceEEECCCCCEEEEECCCCeEEEEE
Confidence            66899999999999888773          21                  222 77899999999999999999999999


Q ss_pred             c--cccCCCCceeEeecCCCCCCCCEEEEEEec----CCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCC
Q 005342          421 L--QLINEPSECRTLLLPDNSFGGRVVRLIYSH----SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSS  493 (701)
Q Consensus       421 ~--~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp----dg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~  493 (701)
                      +  .    ++++.. .++   +...+..++|+|    ||+++++++. +++|.+||..+                     
T Consensus       207 ~~~~----t~~~~~-~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t---------------------  257 (543)
T 1nir_A          207 LWAK----EPTKVA-EIK---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET---------------------  257 (543)
T ss_dssp             TTSS----SCEEEE-EEE---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT---------------------
T ss_pred             CcCC----CCcEEE-EEe---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc---------------------
Confidence            9  5    444333 121   345689999999    9999999885 89999997633                     


Q ss_pred             CeEEeecccC----------CCCCCeEEEEec--CCE-EEEEe-CCeEEEEeCCCCcEEE--EecCCCCCeEEEEEcCCC
Q 005342          494 KLVMTNDIAA----------DPKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLA--TFANPPPIATYFILLPQD  557 (701)
Q Consensus       494 ~~~~~~~~~~----------~~~~~v~~l~~s--~~~-l~s~s-dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~spdg  557 (701)
                      ++++.. +..          .+...+.++.++  +.. +++.. ++.|.+||+.+++.+.  .+. +...+..++|+|+|
T Consensus       258 ~~~~~~-i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg  335 (543)
T 1nir_A          258 LEPKQI-VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSH  335 (543)
T ss_dssp             CCEEEE-EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTS
T ss_pred             ccccee-ecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCC
Confidence            332221 100          023378889998  454 45555 7999999998765433  444 55667899999999


Q ss_pred             -eEE-EEeCCCcEEEEeCCCCceEEeecC----CCCCeEEEEEecC-CCEEEEEe-CCCeEEEEECCCCee--eeeeeee
Q 005342          558 -LFA-FGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLS-LNVLVSSG-ADAQLCVWDAVGWKK--LCSKFLH  627 (701)
Q Consensus       558 -~l~-~gs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~v~~spd-g~~l~s~s-~D~~I~vwd~~~g~~--~~~~~l~  627 (701)
                       +++ ++..+++|.+||..+++++..+..    |.+....+ ++|+ |.++++++ .|++|.+||+.++..  ...+.++
T Consensus       336 ~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~  414 (543)
T 1nir_A          336 RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA  414 (543)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEE
Confidence             655 455688999999999999888874    65444443 5787 66777775 689999999988210  0012233


Q ss_pred             eccCCCCCCCCCeEEEEEcCCCCEEEEEe--------cCeEEEEECCCCcee-eeee----------e--eeEEEEEeeE
Q 005342          628 SFQTGLVPETTIVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTLNHT-SQVL----------L--ISHIMFVQIV  686 (701)
Q Consensus       628 ~~~~~~~~~~~~v~~v~~spdg~~l~sg~--------Dg~I~iwd~~~g~~~-~~l~----------~--i~~~~fs~~~  686 (701)
                      ++. +|.   ..+..+.|||||++|+++.        +++|.|||+.+++.. ..++          +  +.++.|+|+.
T Consensus       415 ~l~-~~g---~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g  490 (543)
T 1nir_A          415 ELQ-GQG---GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG  490 (543)
T ss_dssp             EEE-CSC---SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred             EEE-cCC---CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence            233 443   6678899999999999964        789999999999887 5541          1  8899998874


Q ss_pred             E
Q 005342          687 V  687 (701)
Q Consensus       687 ~  687 (701)
                      .
T Consensus       491 ~  491 (543)
T 1nir_A          491 D  491 (543)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=6.9e-22  Score=201.47  Aligned_cols=248  Identities=10%  Similarity=-0.027  Sum_probs=185.6

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNL  419 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw  419 (701)
                      +.|++|++||+.+++....                              ..|.. |.+++|+|||++|++++ ++.|.+|
T Consensus        19 ~~~~~i~~~d~~~~~~~~~------------------------------~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~   67 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVV------------------------------WQTPELFEAPNWSPDGKYLLLNS-EGLLYRL   67 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEE------------------------------EEESSCCEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred             CcceeEEEEeCCCCceeee------------------------------ccCCcceEeeEECCCCCEEEEEc-CCeEEEE
Confidence            6789999999988876544                              24555 89999999999999987 6899999


Q ss_pred             eccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceeeEEeeCCCCeE
Q 005342          420 KLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV  496 (701)
Q Consensus       420 ~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~  496 (701)
                      |+.    + ++...+.  ...+...+.+++|+|||+++++++.  ++...+|.+                   +..++..
T Consensus        68 d~~----~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~-------------------~~~~~~~  122 (297)
T 2ojh_A           68 SLA----GDPSPEKVD--TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL-------------------PSTGGTP  122 (297)
T ss_dssp             ESS----SCCSCEECC--CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE-------------------ETTCCCC
T ss_pred             eCC----CCCCceEec--cccccccccceEECCCCCEEEEEEeCCCCcceEEEE-------------------ECCCCce
Confidence            997    5 5444422  1123467889999999999999994  467777755                   5455443


Q ss_pred             EeecccCCCCCCeEEEEec--CCEEE-EEe-CCeEEEEeCCC-CcEEEEecCCCCCeEEEEEcCCC-eEEEEe-CCCcEE
Q 005342          497 MTNDIAADPKDSISCFALR--GSHLF-SAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGF-DDSSIL  569 (701)
Q Consensus       497 ~~~~~~~~~~~~v~~l~~s--~~~l~-s~s-dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~spdg-~l~~gs-~dg~I~  569 (701)
                      ..  +.  +...+.+++|+  |+.++ ++. ++.+++|++.. +.....+..+...+.+++|+|+| .+++++ .++.+.
T Consensus       123 ~~--~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~  198 (297)
T 2ojh_A          123 RL--MT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQ  198 (297)
T ss_dssp             EE--CC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             EE--ee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCcc
Confidence            32  21  22358889999  77776 565 89889988532 23445666677889999999999 776655 588999


Q ss_pred             EEeCC-CCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-----------CeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342          570 VHCPC-TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-----------AQLCVWDAVGWKKLCSKFLHSFQTGLVPET  637 (701)
Q Consensus       570 iwd~~-~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-----------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~  637 (701)
                      +|++. .+..+..+..|...+.+++|+|+|++|++++.+           +.|++||+.+++......+.    +|.   
T Consensus       199 i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~----~~~---  271 (297)
T 2ojh_A          199 IWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF----GGQ---  271 (297)
T ss_dssp             EEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE----EST---
T ss_pred             EEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC----CCC---
Confidence            99876 556667788888889999999999999888765           57999999987643322222    333   


Q ss_pred             CCeEEEEEcCCCCEEEEE
Q 005342          638 TIVNHIQFHPDQIHLLSI  655 (701)
Q Consensus       638 ~~v~~v~~spdg~~l~sg  655 (701)
                      ..+.+++|+|+|++|+++
T Consensus       272 ~~~~~~~~spdg~~l~~~  289 (297)
T 2ojh_A          272 GTMNSPNWSPDGDEFAYV  289 (297)
T ss_dssp             TTSCSCCBCTTSSEEEEE
T ss_pred             cccccceECCCCCEEEEE
Confidence            678899999999999875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=5.3e-21  Score=230.88  Aligned_cols=328  Identities=10%  Similarity=0.014  Sum_probs=234.2

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------C------CCCeEEEEeccCCccccccccccCCCCCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------A------NNETISLKDFPTVSNLRYASSILTDKPNQEGR  373 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s------~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~  373 (701)
                      +.|.+|+..+++. ..+..|...+.  +++||||       +      .+..|++||+.++.....              
T Consensus        33 ~~l~~~~~~gg~~-~~lt~~~~~v~--~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~l--------------   95 (1045)
T 1k32_A           33 DDLWEHDLKSGST-RKIVSNLGVIN--NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI--------------   95 (1045)
T ss_dssp             TEEEEEETTTCCE-EEEECSSSEEE--EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC--------------
T ss_pred             CcEEEEECCCCcE-EEeeeCCCccc--CeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEc--------------
Confidence            5688999987764 56778999999  9999999       2      234799999988764332              


Q ss_pred             CcccccCCCCCCCccccCCCc-e-------EEEEEcCCCCeEEEEcCC------CcEEEEeccccCCCCceeEeec----
Q 005342          374 PLDASSGDDSNDSSCFNDNNQ-S-------RESTSLPDADSAVCAKSL------EKSVNLKLQLINEPSECRTLLL----  435 (701)
Q Consensus       374 ~~~~s~~D~~~~~~~l~~h~~-V-------~~l~~spdg~~l~s~s~d------~~v~iw~~~~~~~~~~~~~l~~----  435 (701)
                                      ..|.. +       ..++|+|||+.+++++.+      ..+..|++.    ++....+..    
T Consensus        96 ----------------t~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~----~g~~~~l~~~~~~  155 (1045)
T 1k32_A           96 ----------------TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVEND----GINFVPLNLGPAT  155 (1045)
T ss_dssp             ----------------CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGG----GTEEEECCSCSCS
T ss_pred             ----------------ccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECC----CCCeEEecCCCcc
Confidence                            23444 5       899999999977777754      357777765    222111100    


Q ss_pred             ------------------------------------------CCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          436 ------------------------------------------PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       436 ------------------------------------------~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                                                                ...+|...+.++.|+++ ..+++++.|+.+.+|.+...
T Consensus       156 ~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~  234 (1045)
T 1k32_A          156 HILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD  234 (1045)
T ss_dssp             EEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT
T ss_pred             eeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC
Confidence                                                      00245677888899988 55566667899999986532


Q ss_pred             --Cc---------------ccccccc---ceeeEEeeCCCCeEEeecccCC----------CCCCeEEEEec---CCEEE
Q 005342          474 --KQ---------------SLEEENV---NMESQLYQPSSKLVMTNDIAAD----------PKDSISCFALR---GSHLF  520 (701)
Q Consensus       474 --~~---------------~~g~~~~---~~~i~~~d~~~~~~~~~~~~~~----------~~~~v~~l~~s---~~~l~  520 (701)
                        ..               ++|+.++   ...+.+|+...+.+..  +...          |...+.+++|+   |+.++
T Consensus       235 g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~--l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la  312 (1045)
T 1k32_A          235 GKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEK--IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA  312 (1045)
T ss_dssp             SCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEE--CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE
T ss_pred             CCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeee--eccCcccccccccccccccceeeecCCCCCEEE
Confidence              11               1122111   1125666664444331  2110          23368888886   77888


Q ss_pred             EEeCCeEEEEeCCCCcEEEEecCCCC-CeEEEEEcCCC-eEEEEeCCCcEE-EEeCCCCceEEeecCCCCCeEEEEEecC
Q 005342          521 SASGGKISIFSLETFQTLATFANPPP-IATYFILLPQD-LFAFGFDDSSIL-VHCPCTKKTKAKLKGHQNRITCLAYSLS  597 (701)
Q Consensus       521 s~sdg~I~iwd~~~~~~~~~~~~~~~-~i~~l~~spdg-~l~~gs~dg~I~-iwd~~~~~~~~~l~~h~~~V~~v~~spd  597 (701)
                      +++++.|++|+..++... .+..+.. .+..++|+ || .+++++.++.++ +||+.+++... +.+|...+..++|+||
T Consensus       313 ~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpD  389 (1045)
T 1k32_A          313 FVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRN  389 (1045)
T ss_dssp             EEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTT
T ss_pred             EEEcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCC
Confidence            888999999999877654 4566666 88999999 99 888888888999 99998876554 4478889999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec----------CeEEEEECC
Q 005342          598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE----------GQIDVYEAP  666 (701)
Q Consensus       598 g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D----------g~I~iwd~~  666 (701)
                      |++|++++.++.|++||+.+|+...      +..+|.   ..+.+++|||||++|+++ .+          +.|++||+.
T Consensus       390 G~~la~~~~~~~v~~~d~~tg~~~~------~~~~~~---~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          390 GKFAVVANDRFEIMTVDLETGKPTV------IERSRE---AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEE------EEECSS---SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             CCEEEEECCCCeEEEEECCCCceEE------eccCCC---CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            9999999999999999999986322      222444   778999999999999874 44          389999999


Q ss_pred             CCceeeeeee----eeEEEEEeeEE
Q 005342          667 TLNHTSQVLL----ISHIMFVQIVV  687 (701)
Q Consensus       667 ~g~~~~~l~~----i~~~~fs~~~~  687 (701)
                      +++ +..+..    +.+++|+|+..
T Consensus       461 ~g~-~~~l~~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          461 GRK-IFAATTENSHDYAPAFDADSK  484 (1045)
T ss_dssp             TTE-EEECSCSSSBEEEEEECTTSC
T ss_pred             CCc-EEEeeCCCcccCCceEcCCCC
Confidence            887 444443    78889998743

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=9.8e-22  Score=228.75  Aligned_cols=304  Identities=12%  Similarity=0.054  Sum_probs=208.4

Q ss_pred             CcceeeeEEEEccC-------CC-CC-----eEEEEeccCCccccccccccCCCCCCCCCCcccccC----CCCC--CCc
Q 005342          327 MDWWVPYCINVMPN-------AN-NE-----TISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG----DDSN--DSS  387 (701)
Q Consensus       327 ~~~v~~~~l~fspd-------s~-d~-----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----D~~~--~~~  387 (701)
                      ...+.  .++||||       +. |+     +|++||+.+++....+          ..+.....+.    +...  ...
T Consensus        36 ~~~~~--~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  103 (741)
T 2ecf_A           36 GPTLM--KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV----------DSKVVLPGTETLSDEEKARRERQ  103 (741)
T ss_dssp             CCCCE--EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE----------CGGGTC-----------------
T ss_pred             CCCCC--CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc----------chhhcccccccccchhhhhhhhh
Confidence            34567  8999999       44 77     9999999999876652          1111000000    0000  000


Q ss_pred             cccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC---ceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342          388 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT  464 (701)
Q Consensus       388 ~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~---~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  464 (701)
                      -+.+...|.+++|||||++|++++. +.|.+||+.    ++   ....+    ..+...+.+++|||||++|++++ ++.
T Consensus       104 ~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~----~~~~~~~~~l----~~~~~~~~~~~~SPDG~~la~~~-~~~  173 (741)
T 2ecf_A          104 RIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLK----QEGKAAVRQL----THGEGFATDAKLSPKGGFVSFIR-GRN  173 (741)
T ss_dssp             ---CCEESCCCEECTTSSEEEEEET-TEEEEEESS----SCSTTSCCBC----CCSSSCEEEEEECTTSSEEEEEE-TTE
T ss_pred             hhccccCcceeEECCCCCEEEEEeC-CcEEEEECC----CCCcceEEEc----ccCCcccccccCCCCCCEEEEEe-CCc
Confidence            0111122778999999999999987 999999997    44   33332    23567899999999999998887 468


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCC----------------CeEEEEec--CCEEEEEe-CC
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD----------------SISCFALR--GSHLFSAS-GG  525 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~----------------~v~~l~~s--~~~l~s~s-dg  525 (701)
                      |.+||+                     .++....  +...+..                .+.+++||  |++|++++ |+
T Consensus       174 i~~~d~---------------------~~g~~~~--~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          174 LWVIDL---------------------ASGRQMQ--LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             EEEEET---------------------TTTEEEE--CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             EEEEec---------------------CCCCEEE--eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence            888866                     3333322  1111111                24678999  88888886 54


Q ss_pred             ---------------------------------eEEEEeCCC-CcEEEEec--CCCCCeEEEEEcCCC-eEEEEeC----
Q 005342          526 ---------------------------------KISIFSLET-FQTLATFA--NPPPIATYFILLPQD-LFAFGFD----  564 (701)
Q Consensus       526 ---------------------------------~I~iwd~~~-~~~~~~~~--~~~~~i~~l~~spdg-~l~~gs~----  564 (701)
                                                       .|++||+.+ ++......  .+...+..++| ||| .|++++.    
T Consensus       231 ~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~  309 (741)
T 2ecf_A          231 SPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQ  309 (741)
T ss_dssp             TTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTS
T ss_pred             CCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccC
Confidence                                             889999988 77654443  35677899999 999 7776653    


Q ss_pred             -CCcEEEEeCCCCceEEeecCCCC----CeEEEEEecCCCEEEEEeCCCeEEEEECCC-CeeeeeeeeeeccCCCCCCCC
Q 005342          565 -DSSILVHCPCTKKTKAKLKGHQN----RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETT  638 (701)
Q Consensus       565 -dg~I~iwd~~~~~~~~~l~~h~~----~V~~v~~spdg~~l~s~s~D~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~~~  638 (701)
                       +..|++||+.+++....+..|..    .+.+++|+|||+++++++.|+.++||.+.. +.      ...+..+.    .
T Consensus       310 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~------~~~l~~~~----~  379 (741)
T 2ecf_A          310 KKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK------AAALTHGN----W  379 (741)
T ss_dssp             SEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC------EEESCCSS----S
T ss_pred             CeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC------eeeeeecc----e
Confidence             56899999999988777766543    456899999999999999999888887653 22      22233332    6


Q ss_pred             CeEEE-EEcCCCCEEEE-E-ecC--eEEEEECCC-Cceeeeeee---eeEEEEEeeE
Q 005342          639 IVNHI-QFHPDQIHLLS-I-HEG--QIDVYEAPT-LNHTSQVLL---ISHIMFVQIV  686 (701)
Q Consensus       639 ~v~~v-~~spdg~~l~s-g-~Dg--~I~iwd~~~-g~~~~~l~~---i~~~~fs~~~  686 (701)
                      .+.++ .|+|||+.|+. + .++  .++||++.. |+..+.+.+   +.+++|||+.
T Consensus       380 ~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg  436 (741)
T 2ecf_A          380 SVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNA  436 (741)
T ss_dssp             CEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTS
T ss_pred             EEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCC
Confidence            78787 59999998875 4 444  899999864 655566654   8889998874

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=5.1e-20  Score=192.37  Aligned_cols=258  Identities=10%  Similarity=0.054  Sum_probs=174.2

Q ss_pred             eEEEEEcCCCCeEEEEcCC-CcEEEEeccccCCCCceeEee-cCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecC
Q 005342          395 SRESTSLPDADSAVCAKSL-EKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQ  471 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d-~~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~  471 (701)
                      +.+++|+|+|++|++++.+ +.|.+|++...  ++....+. ++   ....+.+++|+|+|+++++++. ++.|.+||+.
T Consensus        40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--DGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CceEEECCCCCEEEEeecCCCeEEEEEecCC--CCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            7789999999998888876 99999998621  22322222 21   1237889999999998877776 7899999772


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCC-CcEEE----Eec
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLA----TFA  542 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~-~~~~~----~~~  542 (701)
                      .+                  ..+..... +  .....+.+++|+  |+++++++  ++.|++||+.+ ++...    .+.
T Consensus       115 ~~------------------~~~~~~~~-~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~  173 (343)
T 1ri6_A          115 DG------------------LPVGVVDV-V--EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT  173 (343)
T ss_dssp             TT------------------EEEEEEEE-E--CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CC------------------cccccccc-c--cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc
Confidence            10                  11112211 1  123457888999  77777665  79999999987 65432    222


Q ss_pred             C-CCCCeEEEEEcCCC-eEEE-EeCCCcEEEEeCCC--Cce--EEeec----CC--CCCeEEEEEecCCCEEE-EEeCCC
Q 005342          543 N-PPPIATYFILLPQD-LFAF-GFDDSSILVHCPCT--KKT--KAKLK----GH--QNRITCLAYSLSLNVLV-SSGADA  608 (701)
Q Consensus       543 ~-~~~~i~~l~~spdg-~l~~-gs~dg~I~iwd~~~--~~~--~~~l~----~h--~~~V~~v~~spdg~~l~-s~s~D~  608 (701)
                      . ....+..++|+|+| ++++ +..++.|.+||+..  ++.  ...+.    ++  ...+..++|+|+|++|+ +++.++
T Consensus       174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~  253 (343)
T 1ri6_A          174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS  253 (343)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred             cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC
Confidence            2 34578899999999 6654 45889999999953  432  22222    11  23567899999998776 555799


Q ss_pred             eEEEEECC--CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEE--CCCCce--eeeeee---e
Q 005342          609 QLCVWDAV--GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYE--APTLNH--TSQVLL---I  677 (701)
Q Consensus       609 ~I~vwd~~--~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd--~~~g~~--~~~l~~---i  677 (701)
                      .|++||+.  ++..   ..+..+..+     ..+.+++|+|+|++|+++  .++.|.+|+  ..+|+.  +..++.   .
T Consensus       254 ~i~v~d~~~~~~~~---~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p  325 (343)
T 1ri6_A          254 LITVFSVSEDGSVL---SKEGFQPTE-----TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGP  325 (343)
T ss_dssp             EEEEEEECTTSCCE---EEEEEEECS-----SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred             EEEEEEEcCCCCce---EEeeeecCC-----CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCC
Confidence            99999998  4332   222222222     347899999999988875  579999994  456643  444443   6


Q ss_pred             eEEEEEeeE
Q 005342          678 SHIMFVQIV  686 (701)
Q Consensus       678 ~~~~fs~~~  686 (701)
                      .+++|.|..
T Consensus       326 ~~i~~~~~~  334 (343)
T 1ri6_A          326 MWVVVNAHE  334 (343)
T ss_dssp             CEEEEEEEC
T ss_pred             eeEEEEccc
Confidence            777777653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=3.6e-21  Score=223.26  Aligned_cols=291  Identities=11%  Similarity=0.076  Sum_probs=200.3

Q ss_pred             EEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC-ceEEEEEcCCCCe
Q 005342          334 CINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN-QSRESTSLPDADS  406 (701)
Q Consensus       334 ~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~-~V~~l~~spdg~~  406 (701)
                      +++|+||      +.|++|++||+.+++....          +.++.                .+. .|.+++|||||++
T Consensus        21 ~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~----------~~~~~----------------~~~~~v~~~~~SpDg~~   74 (723)
T 1xfd_A           21 EAKWISDTEFIYREQKGTVRLWNVETNTSTVL----------IEGKK----------------IESLRAIRYEISPDREY   74 (723)
T ss_dssp             CCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEE----------ECTTT----------------TTTTTCSEEEECTTSSE
T ss_pred             ccEEcCCCcEEEEeCCCCEEEEECCCCcEEEE----------ecccc----------------ccccccceEEECCCCCE
Confidence            7889998      6789999999999987665          33321                111 2789999999999


Q ss_pred             EEEEcCC---------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342          407 AVCAKSL---------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  477 (701)
Q Consensus       407 l~s~s~d---------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  477 (701)
                      |++++.+         +.+.+||+.    ++++..+. ....+...+..++|||||+.|++++. +.|++||..++    
T Consensus        75 l~~~~~~~~~~~~~~~~~i~~~d~~----~~~~~~l~-~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g----  144 (723)
T 1xfd_A           75 ALFSYNVEPIYQHSYTGYYVLSKIP----HGDPQSLD-PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK----  144 (723)
T ss_dssp             EEEEESCCCCSSSCCCSEEEEEESS----SCCCEECC-CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS----
T ss_pred             EEEEecCccceeecceeeEEEEECC----CCceEecc-CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC----
Confidence            9999764         778899998    56554433 12234556889999999999999886 78999976433    


Q ss_pred             cccccceeeEEeeCCCCeEEeecccCCCC------------------CCeEEEEec--CCEEEEEe-CC-----------
Q 005342          478 EEENVNMESQLYQPSSKLVMTNDIAADPK------------------DSISCFALR--GSHLFSAS-GG-----------  525 (701)
Q Consensus       478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~------------------~~v~~l~~s--~~~l~s~s-dg-----------  525 (701)
                                       ..... . ..+.                  ..+.+++||  |+.|++++ ++           
T Consensus       145 -----------------~~~~~-~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~  205 (723)
T 1xfd_A          145 -----------------QAIRV-V-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY  205 (723)
T ss_dssp             -----------------CCEEE-E-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred             -----------------ceEEE-e-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeecc
Confidence                             22110 0 1111                  133788888  78888776 42           


Q ss_pred             -----------------------eEEEEeCCCCcEEEEecCC------CCCeEEEEEcCCC-eEEEEeCC----CcEEEE
Q 005342          526 -----------------------KISIFSLETFQTLATFANP------PPIATYFILLPQD-LFAFGFDD----SSILVH  571 (701)
Q Consensus       526 -----------------------~I~iwd~~~~~~~~~~~~~------~~~i~~l~~spdg-~l~~gs~d----g~I~iw  571 (701)
                                             .|++||+.+++....+..+      ...+.+++|+||| ++++.+..    ..|++|
T Consensus       206 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~  285 (723)
T 1xfd_A          206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC  285 (723)
T ss_dssp             SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred             CCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEE
Confidence                                   7999999988765666644      4568999999999 77666433    579999


Q ss_pred             eCCCCceEEeecC-CCCCeE----EEEEecCCCEEEE--EeCCC------eEEEEE-CCCCeeeeeeeeeeccCCCCCCC
Q 005342          572 CPCTKKTKAKLKG-HQNRIT----CLAYSLSLNVLVS--SGADA------QLCVWD-AVGWKKLCSKFLHSFQTGLVPET  637 (701)
Q Consensus       572 d~~~~~~~~~l~~-h~~~V~----~v~~spdg~~l~s--~s~D~------~I~vwd-~~~g~~~~~~~l~~~~~~~~~~~  637 (701)
                      |+.+++....+.. +.+.+.    .++|+|||+.|+.  +..++      .|++|| ..++...   ....+..++    
T Consensus       286 d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~----  358 (723)
T 1xfd_A          286 DATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGD----  358 (723)
T ss_dssp             ETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSS----
T ss_pred             eCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---ceeEeecCC----
Confidence            9999987766654 334443    7899999997664  45677      577788 3444200   011133333    


Q ss_pred             CCeEE-EEEcCCCCEEEE-Ee-c--CeEEEEECCCCc--eeeeee------e-eeEEEEEeeE
Q 005342          638 TIVNH-IQFHPDQIHLLS-IH-E--GQIDVYEAPTLN--HTSQVL------L-ISHIMFVQIV  686 (701)
Q Consensus       638 ~~v~~-v~~spdg~~l~s-g~-D--g~I~iwd~~~g~--~~~~l~------~-i~~~~fs~~~  686 (701)
                      ..+.. ++|+|||+.|+. +. +  +.++||++....  ....+.      + +..++|||+.
T Consensus       359 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg  421 (723)
T 1xfd_A          359 WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM  421 (723)
T ss_dssp             SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred             eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence            44544 699999999986 43 4  789999986421  233332      2 7889999874

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=1.1e-19  Score=191.07  Aligned_cols=250  Identities=10%  Similarity=0.006  Sum_probs=189.5

Q ss_pred             eEEEEEcCCCCeEEEEcC-------CCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcE
Q 005342          395 SRESTSLPDADSAVCAKS-------LEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATH  465 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~-------d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i  465 (701)
                      +..++|+|+|+++++++.       ++.|.+||..    +++... +..     ...+.+++|+|+|+++++++. ++.|
T Consensus        43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----~~~~~~~~~~-----~~~~~~~~~s~dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----TLEVTQAIHN-----DLKPFGATINNTTQTLWFGNTVNSAV  113 (353)
T ss_dssp             EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----TCCEEEEEEE-----SSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred             ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----CCeEEEEEec-----CCCcceEEECCCCCEEEEEecCCCEE
Confidence            678999999998888774       5689999997    454333 222     344678999999997666655 7899


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCC--------CCCeEEEEec--CCEEEEEe---CCeEEEEeC
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP--------KDSISCFALR--GSHLFSAS---GGKISIFSL  532 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~--------~~~v~~l~~s--~~~l~s~s---dg~I~iwd~  532 (701)
                      .+||.                     .+++.... +..+.        ...+.+++++  |+++++++   ++.|.+||.
T Consensus       114 ~~~d~---------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~  171 (353)
T 3vgz_A          114 TAIDA---------------------KTGEVKGR-LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG  171 (353)
T ss_dssp             EEEET---------------------TTCCEEEE-EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred             EEEeC---------------------CCCeeEEE-EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence            99965                     44443221 11111        1126789998  77666654   689999999


Q ss_pred             CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC----CCCCeEEEEEecCCCEEEEEeC-
Q 005342          533 ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNVLVSSGA-  606 (701)
Q Consensus       533 ~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~v~~spdg~~l~s~s~-  606 (701)
                      .+++.+..+..+...+.+++|+|+| .+++++.++.|.+||..+++.+..+..    +...+..++|+|+|++++.++. 
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  251 (353)
T 3vgz_A          172 GNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK  251 (353)
T ss_dssp             TTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred             CCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence            9999988887566668899999999 999999999999999999988877764    4556888999999997766554 


Q ss_pred             CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCceeeeeee---eeEEE
Q 005342          607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQVLL---ISHIM  681 (701)
Q Consensus       607 D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~~~~~l~~---i~~~~  681 (701)
                      ++.|.+||..+++...  .+.   .+     . ...++|+|+|+++++ + .++.|.+||..+++.+..++.   +.+++
T Consensus       252 ~~~v~~~d~~~~~~~~--~~~---~~-----~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  320 (353)
T 3vgz_A          252 AAEVLVVDTRNGNILA--KVA---AP-----E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLA  320 (353)
T ss_dssp             SSEEEEEETTTCCEEE--EEE---CS-----S-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred             CCEEEEEECCCCcEEE--EEE---cC-----C-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEE
Confidence            5999999999986432  222   12     2 246999999997766 4 589999999999999888876   88889


Q ss_pred             EEeeE
Q 005342          682 FVQIV  686 (701)
Q Consensus       682 fs~~~  686 (701)
                      |+|+.
T Consensus       321 ~s~dg  325 (353)
T 3vgz_A          321 LSADG  325 (353)
T ss_dssp             ECTTS
T ss_pred             EcCCC
Confidence            98764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=2.1e-20  Score=217.61  Aligned_cols=310  Identities=10%  Similarity=0.035  Sum_probs=215.5

Q ss_pred             cccccccCccceeEEEeecCcc------------------------eeeeEEEEccC------CCCCeEEEEeccCC---
Q 005342          308 KLKFPSMDKSRLLSLIKQIMDW------------------------WVPYCINVMPN------ANNETISLKDFPTV---  354 (701)
Q Consensus       308 ~i~iwd~~~~~~~~~l~~h~~~------------------------v~~~~l~fspd------s~d~~i~lWd~~~~---  354 (701)
                      .|.+||+.+++....+..+...                        +.  +++||||      +.+++|++||+.++   
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~  142 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV--DYQWSPDAQRLLFPLGGELYLYDLKQEGKA  142 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC--------------------CCEESC--CCEECTTSSEEEEEETTEEEEEESSSCSTT
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc--eeEECCCCCEEEEEeCCcEEEEECCCCCcc
Confidence            7889999999988888766433                        67  9999999      44599999999887   


Q ss_pred             ccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEe
Q 005342          355 SNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL  433 (701)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l  433 (701)
                      .....                              ..|.. +..++|||||++|++++. +.|.+||+.    +++...+
T Consensus       143 ~~~~l------------------------------~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~----~g~~~~~  187 (741)
T 2ecf_A          143 AVRQL------------------------------THGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLA----SGRQMQL  187 (741)
T ss_dssp             SCCBC------------------------------CCSSSCEEEEEECTTSSEEEEEET-TEEEEEETT----TTEEEEC
T ss_pred             eEEEc------------------------------ccCCcccccccCCCCCCEEEEEeC-CcEEEEecC----CCCEEEe
Confidence            33222                              24445 889999999999999885 689999997    5655443


Q ss_pred             ecCCCCCCCC----------------EEEEEEecCCCEEEEEECCC-cEEEEecCCC-----------Ccccccccccee
Q 005342          434 LLPDNSFGGR----------------VVRLIYSHSGDFLVALTQTA-THKLWKWQSN-----------KQSLEEENVNME  485 (701)
Q Consensus       434 ~~~~~~~~~~----------------v~~l~~spdg~~l~s~s~dg-~i~vwd~~~~-----------~~~~g~~~~~~~  485 (701)
                      ..   .+...                +.+++|||||++|++++.|+ .+..|+....           -...|.......
T Consensus       188 ~~---~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          188 TA---DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             CC---CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             cc---CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            31   12221                47799999999999987754 2222210000           001122223345


Q ss_pred             eEEeeCCC-CeEEeecccCCCCCCeEEEEec-CCEEEEEe------CCeEEEEeCCCCcEEEEecCCCC----CeEEEEE
Q 005342          486 SQLYQPSS-KLVMTNDIAADPKDSISCFALR-GSHLFSAS------GGKISIFSLETFQTLATFANPPP----IATYFIL  553 (701)
Q Consensus       486 i~~~d~~~-~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s------dg~I~iwd~~~~~~~~~~~~~~~----~i~~l~~  553 (701)
                      +.+||..+ ++.........|...+.+++|. |++|++++      +..|++||+.+++....+..+..    .+..++|
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  344 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF  344 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence            66778877 7654321212466778888887 88887654      35799999999987776654432    4568999


Q ss_pred             cCCC-eEEEEeCCCcEEEEeCC-CCceEEeecCCCCCeEEE-EEecCCCEEEE-EeCCC--eEEEEECCC-Ceeeeeeee
Q 005342          554 LPQD-LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCL-AYSLSLNVLVS-SGADA--QLCVWDAVG-WKKLCSKFL  626 (701)
Q Consensus       554 spdg-~l~~gs~dg~I~iwd~~-~~~~~~~l~~h~~~V~~v-~~spdg~~l~s-~s~D~--~I~vwd~~~-g~~~~~~~l  626 (701)
                      +||| ++++++.||.++||.+. ++. ...+..|...|..+ .|+|||+.|+. ++.++  .+++|++.. +..  ... 
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~--~~~-  420 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ--PQR-  420 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC--CEE-
T ss_pred             CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC--eee-
Confidence            9999 99999999977777654 344 77788888888887 59999997754 55555  899999864 321  122 


Q ss_pred             eeccCCCCCCCCCeEEEEEcCCCCEEEEE--ec---CeEEEEECCCC
Q 005342          627 HSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE---GQIDVYEAPTL  668 (701)
Q Consensus       627 ~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~D---g~I~iwd~~~g  668 (701)
                        +. + .   ..+.+++|||||++++..  ..   ..+.+|+..++
T Consensus       421 --l~-~-~---~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          421 --LS-K-A---PGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             --CC-C-S---CSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             --cc-c-C---CCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence              22 2 2   668899999999998873  22   46899987543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=6.9e-20  Score=221.17  Aligned_cols=337  Identities=11%  Similarity=-0.022  Sum_probs=242.3

Q ss_pred             cccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccC-CccccccccccCCCCCCCCCCcccccC
Q 005342          308 KLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPT-VSNLRYASSILTDKPNQEGRPLDASSG  380 (701)
Q Consensus       308 ~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~  380 (701)
                      ..++|....+.....+.+|...+.  ++.|+|+      +.|+++.||.+.. +.....          +          
T Consensus       184 ~~~lw~~~~~~~~~~l~~~~~~v~--~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~----------l----------  241 (1045)
T 1k32_A          184 RGKIWIEVNSGAFKKIVDMSTHVS--SPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK----------H----------  241 (1045)
T ss_dssp             CCEEEEEEETTEEEEEECCSSCCE--EEEEETTEEEEEECTTSSCEEEEEETTSCSCEE----------C----------
T ss_pred             cCCEEEECCCCCeEECcCCCCccc--ceEEeCCEEEEEEeccCceEEEEEeCCCCcceE----------e----------
Confidence            455665444455566689999999  9999998      6778999998764 322222          1          


Q ss_pred             CCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCC-------CCCCCCEEEEEEe-cC
Q 005342          381 DDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-------NSFGGRVVRLIYS-HS  452 (701)
Q Consensus       381 D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-------~~~~~~v~~l~~s-pd  452 (701)
                               ..|..+...+|+|||+.++++. ++.|.+|++.    ......+....       ..|...+.+++|| ||
T Consensus       242 ---------~~~~~~~~~~~SpDG~~la~~~-~~~i~~~d~~----~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd  307 (1045)
T 1k32_A          242 ---------TSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPD----TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLD  307 (1045)
T ss_dssp             ---------CCCCSSCEEEEEESSSCEEEEE-TTEEEEECTT----TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECG
T ss_pred             ---------cCCCCcceeeEcCCCCEEEEEe-CCEEEEecCC----ceEeeeeccCcccccccccccccccceeeecCCC
Confidence                     2333355679999999999984 7999999984    34333211100       0023468899999 99


Q ss_pred             CCEEEEEECCCcEEEEecCCCCc--c---cc-----------cccc----ceeeE-EeeCCCCeEEeecccCCCCCCeEE
Q 005342          453 GDFLVALTQTATHKLWKWQSNKQ--S---LE-----------EENV----NMESQ-LYQPSSKLVMTNDIAADPKDSISC  511 (701)
Q Consensus       453 g~~l~s~s~dg~i~vwd~~~~~~--~---~g-----------~~~~----~~~i~-~~d~~~~~~~~~~~~~~~~~~v~~  511 (701)
                      |+++++++ ++.+.+|+...+..  .   .+           +.+.    ...+. +|+..++....  +. +|...+.+
T Consensus       308 G~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~--l~-~~~~~~~~  383 (1045)
T 1k32_A          308 GDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK--FE-ENLGNVFA  383 (1045)
T ss_dssp             GGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE--CC-CCCCSEEE
T ss_pred             CCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceE--ec-CCccceee
Confidence            99998887 78999999876543  0   11           1111    11355 67887776553  33 67788999


Q ss_pred             EEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC----------cEEEEeCCCCc
Q 005342          512 FALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS----------SILVHCPCTKK  577 (701)
Q Consensus       512 l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg----------~I~iwd~~~~~  577 (701)
                      ++|+  |++|++++ ++.|++||+.+++......+|...+.+++|+||| ++++++.++          .|++||+.+++
T Consensus       384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            9999  88999988 8999999999998888877888889999999999 888777644          89999999887


Q ss_pred             eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee-----e----------------------------
Q 005342          578 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-----K----------------------------  624 (701)
Q Consensus       578 ~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~-----~----------------------------  624 (701)
                       +..+.+|...+..++|+|||++|++++.++...+|+.........     .                            
T Consensus       464 -~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  542 (1045)
T 1k32_A          464 -IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL  542 (1045)
T ss_dssp             -EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCC
T ss_pred             -EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccc
Confidence             667778888899999999999999999988888887654321000     0                            


Q ss_pred             -----eeeeccCCCCCCCCCeEEEEEcCCCCEEEE------------E--ecCeEEEEECCCCceeeeeeeeeEEEEEee
Q 005342          625 -----FLHSFQTGLVPETTIVNHIQFHPDQIHLLS------------I--HEGQIDVYEAPTLNHTSQVLLISHIMFVQI  685 (701)
Q Consensus       625 -----~l~~~~~~~~~~~~~v~~v~~spdg~~l~s------------g--~Dg~I~iwd~~~g~~~~~l~~i~~~~fs~~  685 (701)
                           .+..+. .+   .+.+..++++|||+++++            +  .+..|.+||+.+++.......+.+++|||+
T Consensus       543 ~g~~~~~~~l~-~~---~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v~~~~~S~D  618 (1045)
T 1k32_A          543 NDMYKRSSPIN-VD---PGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSAD  618 (1045)
T ss_dssp             TTGGGGCEECS-CC---CBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTT
T ss_pred             cCHhHceEEcC-CC---CCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecCcceEEECCC
Confidence                 000011 12   267899999999987774            1  245789999998886444433889999988


Q ss_pred             EEee
Q 005342          686 VVKF  689 (701)
Q Consensus       686 ~~~f  689 (701)
                      ...+
T Consensus       619 G~~l  622 (1045)
T 1k32_A          619 RKTV  622 (1045)
T ss_dssp             SCEE
T ss_pred             CCEE
Confidence            5443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=5e-20  Score=192.03  Aligned_cols=266  Identities=10%  Similarity=0.047  Sum_probs=182.5

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcC-CCcEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKS-LEKSVN  418 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~-d~~v~i  418 (701)
                      +.+++|.+||..+++....+          .                   .+.. + .++|+|+|+++++++. ++.|.+
T Consensus        17 ~~~~~v~~~d~~~~~~~~~~----------~-------------------~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~   66 (331)
T 3u4y_A           17 QHLRRISFFSTDTLEILNQI----------T-------------------LGYDFV-DTAITSDCSNVVVTSDFCQTLVQ   66 (331)
T ss_dssp             GGGTEEEEEETTTCCEEEEE----------E-------------------CCCCEE-EEEECSSSCEEEEEESTTCEEEE
T ss_pred             cCCCeEEEEeCcccceeeeE----------E-------------------ccCCcc-eEEEcCCCCEEEEEeCCCCeEEE
Confidence            55889999999999876662          1                   1223 6 8999999997666554 899999


Q ss_pred             EeccccCCCCce--eEeecCCCCCCCCEEEEEEecCCCEEEEEECCC---cEEEEecCCCCccccccccceeeEEeeCCC
Q 005342          419 LKLQLINEPSEC--RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA---THKLWKWQSNKQSLEEENVNMESQLYQPSS  493 (701)
Q Consensus       419 w~~~~~~~~~~~--~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~  493 (701)
                      ||..    +++.  ..+.    .+.....+++|+|||++++++..++   .|.+||+                     .+
T Consensus        67 ~d~~----~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~---------------------~~  117 (331)
T 3u4y_A           67 IETQ----LEPPKVVAIQ----EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF---------------------LK  117 (331)
T ss_dssp             EECS----SSSCEEEEEE----ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET---------------------TT
T ss_pred             EECC----CCceeEEecc----cCCCCccceEECCCCCEEEEecCCCCcccEEEEEC---------------------CC
Confidence            9997    4443  2222    1334444499999999988544442   8999955                     55


Q ss_pred             CeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCe-EEEEeCCCCcEE----EEecCCCCCeEEEEEcCCC-eEE-EE
Q 005342          494 KLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGK-ISIFSLETFQTL----ATFANPPPIATYFILLPQD-LFA-FG  562 (701)
Q Consensus       494 ~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~-I~iwd~~~~~~~----~~~~~~~~~i~~l~~spdg-~l~-~g  562 (701)
                      ++.+.. +.  ....+.+++|+  |+++++++  ++. |.+|++.....+    ............++|+|+| +++ ++
T Consensus       118 ~~~~~~-~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  194 (331)
T 3u4y_A          118 NKFIST-IP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN  194 (331)
T ss_dssp             TEEEEE-EE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred             CCeEEE-EE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe
Confidence            554432 21  23456899999  76666554  577 999998754322    1222345567999999999 554 45


Q ss_pred             eCCCcEEEEeCCCCce---EEeecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCC
Q 005342          563 FDDSSILVHCPCTKKT---KAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT  638 (701)
Q Consensus       563 s~dg~I~iwd~~~~~~---~~~l~~h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~  638 (701)
                      ..++.|++||+.+++.   +..+..+ ..+..++|+|||++++.++ .++.|.+||+.+++......+..-...+.....
T Consensus       195 ~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
T 3u4y_A          195 LIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF  273 (331)
T ss_dssp             TTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGT
T ss_pred             CCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcc
Confidence            5688999999999988   7777744 5678999999999776554 578999999999875332222200000010012


Q ss_pred             CeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCc
Q 005342          639 IVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLN  669 (701)
Q Consensus       639 ~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~  669 (701)
                      ....++|+|||++|++ + .++.|.+||+.+..
T Consensus       274 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          274 GANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             TCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             cccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            3366899999998876 4 57799999997654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=7.7e-20  Score=212.07  Aligned_cols=324  Identities=9%  Similarity=0.016  Sum_probs=218.5

Q ss_pred             CcccccccCccceeEEEeecCc---ceeeeEEEEccC-------CC---------CCeEEEEeccCCccccccccccCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMD---WWVPYCINVMPN-------AN---------NETISLKDFPTVSNLRYASSILTDK  367 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~---~v~~~~l~fspd-------s~---------d~~i~lWd~~~~~~~~~~~~~~~~~  367 (701)
                      +.|++||..+++....+..|..   .+.  +++||||       +.         ++.+.+||+.+++....        
T Consensus        37 g~i~~~d~~~g~~~~~~~~~~~~~~~v~--~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l--------  106 (723)
T 1xfd_A           37 GTVRLWNVETNTSTVLIEGKKIESLRAI--RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL--------  106 (723)
T ss_dssp             SCEEEBCGGGCCCEEEECTTTTTTTTCS--EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC--------
T ss_pred             CCEEEEECCCCcEEEEeccccccccccc--eEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEec--------
Confidence            7899999999999988887765   378  9999999       22         48899999999876322        


Q ss_pred             CCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCC----
Q 005342          368 PNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG----  442 (701)
Q Consensus       368 ~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~----  442 (701)
                         ..                ..+|.. +..++|||||+.||+++. +.|++|++.    +++...+..   .+..    
T Consensus       107 ---~~----------------~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~----~g~~~~~~~---~~~~~~~~  159 (723)
T 1xfd_A          107 ---DP----------------PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHV----GKQAIRVVS---TGKEGVIY  159 (723)
T ss_dssp             ---CC----------------TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSS----SSCCEEEEC---CCBTTTEE
T ss_pred             ---cC----------------CccccccccccEECCCCCEEEEEEC-CeEEEEECC----CCceEEEec---CCCCCceE
Confidence               11                124555 778999999999999987 799999997    555555432   1122    


Q ss_pred             --------------CEEEEEEecCCCEEEEEECC-CcEEEEecCCCCc------------cccccccceeeEEeeCCCCe
Q 005342          443 --------------RVVRLIYSHSGDFLVALTQT-ATHKLWKWQSNKQ------------SLEEENVNMESQLYQPSSKL  495 (701)
Q Consensus       443 --------------~v~~l~~spdg~~l~s~s~d-g~i~vwd~~~~~~------------~~g~~~~~~~i~~~d~~~~~  495 (701)
                                    .+.+++|||||++|++++.| +.+.+|++.....            ..|.......+.+||..++.
T Consensus       160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~  239 (723)
T 1xfd_A          160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT  239 (723)
T ss_dssp             EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred             CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence                          33789999999999998864 5677777632211            12333334568899998887


Q ss_pred             EEeecccCC-----CCCCeEEEEec--CCEEEEEe-C----CeEEEEeCCCCcEEEEecC-CCCCe----EEEEEcCCC-
Q 005342          496 VMTNDIAAD-----PKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFAN-PPPIA----TYFILLPQD-  557 (701)
Q Consensus       496 ~~~~~~~~~-----~~~~v~~l~~s--~~~l~s~s-d----g~I~iwd~~~~~~~~~~~~-~~~~i----~~l~~spdg-  557 (701)
                      .... +...     +...+.+++|+  |+++++.. .    ..|++||+.+++....+.. +...+    ..++|+||| 
T Consensus       240 ~~~~-l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~  318 (723)
T 1xfd_A          240 HDLE-MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR  318 (723)
T ss_dssp             CCEE-CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred             eeEE-eeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC
Confidence            4222 2211     25678899999  77776654 2    5799999999887665543 22333    378999999 


Q ss_pred             eEEE--EeCCC------cEEEEe-CCCCc--eEEeecCCCCCeEE-EEEecCCCEEEEEeCC---CeEEEEECCCCeeee
Q 005342          558 LFAF--GFDDS------SILVHC-PCTKK--TKAKLKGHQNRITC-LAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLC  622 (701)
Q Consensus       558 ~l~~--gs~dg------~I~iwd-~~~~~--~~~~l~~h~~~V~~-v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~  622 (701)
                      .|+.  +..++      .|++|| ..++.  ....+..+...+.. ++|+|||+.|+..+.+   +.+++|++..+....
T Consensus       319 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~  398 (723)
T 1xfd_A          319 KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN  398 (723)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred             eEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCC
Confidence            5553  55677      577888 44444  14555544444554 6999999999866655   789999987532101


Q ss_pred             eeeeeeccCC--CCCCCCCeEEEEEcCCCCEEEEE--ecC--eEEEEECCCCceeeee
Q 005342          623 SKFLHSFQTG--LVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQV  674 (701)
Q Consensus       623 ~~~l~~~~~~--~~~~~~~v~~v~~spdg~~l~sg--~Dg--~I~iwd~~~g~~~~~l  674 (701)
                      ...   +...  +.   ..+..++|+|||++++..  ..+  ...+++..+++.+..+
T Consensus       399 ~~~---l~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~  450 (723)
T 1xfd_A          399 RQC---LSCDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL  450 (723)
T ss_dssp             CBC---SSTTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred             cce---ecccccCC---CCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence            111   2211  32   668899999999998874  222  3445566566544433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=6.1e-19  Score=185.22  Aligned_cols=259  Identities=12%  Similarity=0.048  Sum_probs=187.2

Q ss_pred             CcceeeeEEEEccC--------CC------CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342          327 MDWWVPYCINVMPN--------AN------NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN  392 (701)
Q Consensus       327 ~~~v~~~~l~fspd--------s~------d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h  392 (701)
                      ...+.  .++|+|+        ..      ++.|.+||..+++....+          ..                   .
T Consensus        40 ~~~~~--~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~----------~~-------------------~   88 (353)
T 3vgz_A           40 GKGAY--EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI----------HN-------------------D   88 (353)
T ss_dssp             ESSEE--EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE----------EE-------------------S
T ss_pred             ccCcc--ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE----------ec-------------------C
Confidence            34466  8889998        22      789999999998877662          11                   1


Q ss_pred             CceEEEEEcCCCCeE-EEEcCCCcEEEEeccccCCCCcee-EeecCCCC-----CCCCEEEEEEecCCCEEEEEE--CCC
Q 005342          393 NQSRESTSLPDADSA-VCAKSLEKSVNLKLQLINEPSECR-TLLLPDNS-----FGGRVVRLIYSHSGDFLVALT--QTA  463 (701)
Q Consensus       393 ~~V~~l~~spdg~~l-~s~s~d~~v~iw~~~~~~~~~~~~-~l~~~~~~-----~~~~v~~l~~spdg~~l~s~s--~dg  463 (701)
                      ..+..++|+|+|+++ +++..++.|.+||..    +++.. .+......     ....+.+++|+|+|+++++++  .++
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  164 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAK----TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES  164 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETT----TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCC----CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc
Confidence            114568999999955 455667999999997    55443 22221110     011378999999999888776  378


Q ss_pred             cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE
Q 005342          464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT  540 (701)
Q Consensus       464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~  540 (701)
                      .|.+||.                     .+++.... + ..+...+.+++++  |+++++++ ++.|.+||..+++....
T Consensus       165 ~i~~~d~---------------------~~~~~~~~-~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~  221 (353)
T 3vgz_A          165 VIWVVDG---------------------GNIKLKTA-I-QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR  221 (353)
T ss_dssp             EEEEEET---------------------TTTEEEEE-E-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             eEEEEcC---------------------CCCceEEE-e-cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE
Confidence            8988854                     55554432 2 2234457788898  88888888 89999999999998877


Q ss_pred             ecC----CCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEE
Q 005342          541 FAN----PPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVW  613 (701)
Q Consensus       541 ~~~----~~~~i~~l~~spdg-~l~~gs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vw  613 (701)
                      +..    +...+..++|+|+| .+++++ .++.|++||..+++.+..+..+.  ...++|+|+|++++.+ ..++.|.+|
T Consensus       222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~  299 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVI  299 (353)
T ss_dssp             EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEE
Confidence            764    45567889999999 665555 45899999999999888777543  2579999999965544 479999999


Q ss_pred             ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342          614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI  655 (701)
Q Consensus       614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg  655 (701)
                      |..+++....  +.   .+     ..+.+++|+|||++++++
T Consensus       300 d~~~~~~~~~--~~---~~-----~~~~~~~~s~dg~~l~v~  331 (353)
T 3vgz_A          300 DAKSYKVVKT--FD---TP-----THPNSLALSADGKTLYVS  331 (353)
T ss_dssp             ETTTTEEEEE--EE---CC-----SEEEEEEECTTSCEEEEE
T ss_pred             ECCCCeEEEE--Ee---cC-----CCCCeEEEcCCCCEEEEE
Confidence            9999864332  22   12     567999999999987764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=1.2e-19  Score=188.98  Aligned_cols=265  Identities=13%  Similarity=0.053  Sum_probs=188.6

Q ss_pred             CCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC--ceEEEEEcCCCCeE-EEEcCCCcEEE
Q 005342          342 NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN--QSRESTSLPDADSA-VCAKSLEKSVN  418 (701)
Q Consensus       342 ~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~--~V~~l~~spdg~~l-~s~s~d~~v~i  418 (701)
                      .+++|.+||+.+++.+..+          ..                  ++.  .+..++|+|+|+.+ ++++.++.|.+
T Consensus         9 ~~~~v~~~d~~~~~~~~~~----------~~------------------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~   60 (337)
T 1pby_B            9 RPDKLVVIDTEKMAVDKVI----------TI------------------ADAGPTPMVPMVAPGGRIAYATVNKSESLVK   60 (337)
T ss_dssp             TTTEEEEEETTTTEEEEEE----------EC------------------TTCTTCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCcEEEEE----------Ec------------------CCCCCCccceEEcCCCCEEEEEeCCCCeEEE
Confidence            4889999999998877652          11                  111  14568999999865 56667889999


Q ss_pred             EeccccCCCCceeE-eecCCC-CCCCCEEEEEEecCCCEEEEEE------------CCCcEEEEecCCCCccccccccce
Q 005342          419 LKLQLINEPSECRT-LLLPDN-SFGGRVVRLIYSHSGDFLVALT------------QTATHKLWKWQSNKQSLEEENVNM  484 (701)
Q Consensus       419 w~~~~~~~~~~~~~-l~~~~~-~~~~~v~~l~~spdg~~l~s~s------------~dg~i~vwd~~~~~~~~g~~~~~~  484 (701)
                      ||+.    +++... +..... .+...+.+++|+|||+++++++            .++.|.+||.              
T Consensus        61 ~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~--------------  122 (337)
T 1pby_B           61 IDLV----TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA--------------  122 (337)
T ss_dssp             EETT----TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET--------------
T ss_pred             EECC----CCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEEC--------------
Confidence            9997    444332 222110 0112567899999999988886            5688888855              


Q ss_pred             eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEE
Q 005342          485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF  561 (701)
Q Consensus       485 ~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~  561 (701)
                             .+++.... +.  ....+.+++|+  |++++++ ++.|++||+.+++....+..+.. ...+.|+|+| .++.
T Consensus       123 -------~~~~~~~~-~~--~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~  190 (337)
T 1pby_B          123 -------ETLSRRKA-FE--APRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWN  190 (337)
T ss_dssp             -------TTTEEEEE-EE--CCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCC
T ss_pred             -------CCCcEEEE-Ee--CCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEee
Confidence                   45554322 21  23456788898  7777777 78899999999988877764431 1133789998 5544


Q ss_pred             EeCC-C-----------------------cEEEEeCCCCceE-EeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342          562 GFDD-S-----------------------SILVHCPCTKKTK-AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       562 gs~d-g-----------------------~I~iwd~~~~~~~-~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~  616 (701)
                      ++.+ +                       .|.+||+.+++.. ..+..+...+.+++|+|||++++++  ++.|++||+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~  268 (337)
T 1pby_B          191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE  268 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred             eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence            4332 2                       4689999998764 2234466678899999999999888  7899999999


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      +++...  .   +..+     ..+.+++|+|||++++++ .++.|.+||+.+++.+..++.
T Consensus       269 ~~~~~~--~---~~~~-----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          269 KNASIK--R---VPLP-----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTEEEE--E---EECS-----SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCcCcc--e---ecCC-----CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            976432  2   2222     456899999999988886 789999999999999888765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=4.2e-20  Score=188.20  Aligned_cols=242  Identities=10%  Similarity=0.051  Sum_probs=181.7

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccC-CccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPT-VSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      +.|.+||..+++.. .+..|...+.  +++|+|+      +.++.|.+||+.+ ++....          ..++      
T Consensus        22 ~~i~~~d~~~~~~~-~~~~~~~~v~--~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~----------~~~~------   82 (297)
T 2ojh_A           22 SSIEIFNIRTRKMR-VVWQTPELFE--APNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKV----------DTGF------   82 (297)
T ss_dssp             EEEEEEETTTTEEE-EEEEESSCCE--EEEECTTSSEEEEEETTEEEEEESSSCCSCEEC----------CCTT------
T ss_pred             eeEEEEeCCCCcee-eeccCCcceE--eeEECCCCCEEEEEcCCeEEEEeCCCCCCceEe----------cccc------
Confidence            67899999998876 4556888899  9999999      5688999999998 766544          1111      


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEc--CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL  456 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s--~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l  456 (701)
                                  +.. |.+++|+|||++|++++  .++...+|.+...  .+....+.     +...+.+++|+|||+++
T Consensus        83 ------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~-----~~~~~~~~~~spdg~~l  143 (297)
T 2ojh_A           83 ------------ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST--GGTPRLMT-----KNLPSYWHGWSPDGKSF  143 (297)
T ss_dssp             ------------CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT--CCCCEECC-----SSSSEEEEEECTTSSEE
T ss_pred             ------------ccccccceEECCCCCEEEEEEeCCCCcceEEEEECC--CCceEEee-----cCCCccceEECCCCCEE
Confidence                        123 77899999999999998  4456666665411  33333322     23358999999999988


Q ss_pred             E-EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEe
Q 005342          457 V-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFS  531 (701)
Q Consensus       457 ~-s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd  531 (701)
                      + +++.++.+.+|++                   +..++....  + ..+...+.+++|+  |+.+++++  ++.+++|+
T Consensus       144 ~~~~~~~~~~~l~~~-------------------~~~~~~~~~--~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~  201 (297)
T 2ojh_A          144 TYCGIRDQVFDIYSM-------------------DIDSGVETR--L-THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWR  201 (297)
T ss_dssp             EEEEEETTEEEEEEE-------------------ETTTCCEEE--C-CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             EEEECCCCceEEEEE-------------------ECCCCcceE--c-ccCCCccccceECCCCCEEEEEecCCCCccEEE
Confidence            7 6777999999976                   555555432  2 3566789999999  77776554  78888888


Q ss_pred             CC-CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC-----------CcEEEEeCCCCce--EEeecCCCCCeEEEEEec
Q 005342          532 LE-TFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----------SSILVHCPCTKKT--KAKLKGHQNRITCLAYSL  596 (701)
Q Consensus       532 ~~-~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d-----------g~I~iwd~~~~~~--~~~l~~h~~~V~~v~~sp  596 (701)
                      +. .+.....+..+...+.+++|+|+| +|++++.+           +.|++||+.+++.  +..+.+|...+.+++|+|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp  281 (297)
T 2ojh_A          202 VRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP  281 (297)
T ss_dssp             EETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT
T ss_pred             ECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC
Confidence            75 455667777777889999999999 88777765           5699999998865  344457888999999999


Q ss_pred             CCCEEEEEeCCC
Q 005342          597 SLNVLVSSGADA  608 (701)
Q Consensus       597 dg~~l~s~s~D~  608 (701)
                      +|++|++++.|.
T Consensus       282 dg~~l~~~~~~~  293 (297)
T 2ojh_A          282 DGDEFAYVRYFP  293 (297)
T ss_dssp             TSSEEEEEEECC
T ss_pred             CCCEEEEEEecc
Confidence            999998877653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=1.2e-19  Score=205.05  Aligned_cols=243  Identities=12%  Similarity=0.017  Sum_probs=176.6

Q ss_pred             eEEEEEcCCCCeEEEEcC-CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---CCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~  470 (701)
                      |++++|+|||+.||+++. ||+++||++.    ++....+..   .+...+.+++|||| +.+++++.   +....+|.+
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~----~g~~~~lt~---~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYD----GGETVKLNR---EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEE----TTEEEECCS---SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEc----CCCcEeeec---ccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence            899999999999999887 9999999986    666655332   23357999999999 66666664   456677755


Q ss_pred             CCCCccccccccceeeEEeeC--CCCeEEeecccCCCCCCeEEEEecCC--EEEEEeCCeEEEEeCCCCcEEEEecCCCC
Q 005342          471 QSNKQSLEEENVNMESQLYQP--SSKLVMTNDIAADPKDSISCFALRGS--HLFSASGGKISIFSLETFQTLATFANPPP  546 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~--~~~~~~~~~~~~~~~~~v~~l~~s~~--~l~s~sdg~I~iwd~~~~~~~~~~~~~~~  546 (701)
                                         +.  ..+.. .  +...+...+.+++++|+  .+++++++.+.+||+.+++.......+. 
T Consensus        96 -------------------~~~~~g~~~-~--l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-  152 (582)
T 3o4h_A           96 -------------------NTSRPGEEQ-R--LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-  152 (582)
T ss_dssp             -------------------ETTSTTCCE-E--CTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-
T ss_pred             -------------------eccCCCccc-c--ccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-
Confidence                               33  22222 1  21122222333333343  3444445556699998887655544322 


Q ss_pred             CeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCe
Q 005342          547 IATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWK  619 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~d----g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~--~I~vwd~~~g~  619 (701)
                        .+++||||| ++++++.+    +.|++||+.+++.. .+.+|.+.+..++|||||++|++++.++  .|++||+.+++
T Consensus       153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence              789999999 98887777    78999999888765 6778888899999999999999888898  99999999975


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEE--------EcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-eeEEEEE
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQ--------FHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-ISHIMFV  683 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~--------~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-i~~~~fs  683 (701)
                      ..   .+.    ++.   ..+..++        |+|||.+++++ .|+++++|++  |+......+ +.+++||
T Consensus       230 ~~---~~~----~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~~~~v~~~~~s  291 (582)
T 3o4h_A          230 VE---DLE----LPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAPQGNHGRVVLW  291 (582)
T ss_dssp             EE---ECC----CSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCCSSEEEEEEEE
T ss_pred             EE---Ecc----CCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccCCCceEEEEec
Confidence            32   222    333   4555566        99999777775 8999999999  877765555 8888887

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=9.9e-19  Score=182.58  Aligned_cols=253  Identities=12%  Similarity=0.118  Sum_probs=173.8

Q ss_pred             eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-CcEEEEecCCCCccccccccce
Q 005342          406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQSNKQSLEEENVNM  484 (701)
Q Consensus       406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g~i~vwd~~~~~~~~g~~~~~~  484 (701)
                      .+++++.|+.|.+|++..   .+....+..  ..+...+.+++|+|+|+++++++.+ +.+.+|++              
T Consensus         7 l~~~~~~~~~v~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~--------------   67 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNH---EGALTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI--------------   67 (343)
T ss_dssp             EEEEEGGGTEEEEEEECT---TSCEEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE--------------
T ss_pred             EEEeCCCCCeEEEEEECC---CCcEEEeee--EecCCCCceEEECCCCCEEEEeecCCCeEEEEEe--------------
Confidence            445558899999999963   232222221  1245678899999999999998886 99999987              


Q ss_pred             eeEEeeCCCCeEEe-ecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeC---CCCcEEEEecCCCCCeEEEEEcCC
Q 005342          485 ESQLYQPSSKLVMT-NDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSL---ETFQTLATFANPPPIATYFILLPQ  556 (701)
Q Consensus       485 ~i~~~d~~~~~~~~-~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~---~~~~~~~~~~~~~~~i~~l~~spd  556 (701)
                           ++.++.... ..+. .+ ..+.+++|+  |+++++++  ++.|.+||+   .+++....+.. ...+.+++|+|+
T Consensus        68 -----~~~~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~d  139 (343)
T 1ri6_A           68 -----APDDGALTFAAESA-LP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPD  139 (343)
T ss_dssp             -----CTTTCCEEEEEEEE-CS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTT
T ss_pred             -----cCCCCceeeccccc-cC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCC
Confidence                 333443211 1121 22 377899999  77776665  789999999   44445555553 345889999999


Q ss_pred             C-eEEEEe-CCCcEEEEeCCC-CceEE----eecC-CCCCeEEEEEecCCCEEEEE-eCCCeEEEEECC--CCeeeeeee
Q 005342          557 D-LFAFGF-DDSSILVHCPCT-KKTKA----KLKG-HQNRITCLAYSLSLNVLVSS-GADAQLCVWDAV--GWKKLCSKF  625 (701)
Q Consensus       557 g-~l~~gs-~dg~I~iwd~~~-~~~~~----~l~~-h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~--~g~~~~~~~  625 (701)
                      | .+++++ .++.|++||+.+ ++...    .+.. ....+..++|+|+|++++++ ..++.|++||+.  +++......
T Consensus       140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~  219 (343)
T 1ri6_A          140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT  219 (343)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred             CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee
Confidence            9 777776 899999999987 65432    2232 33478899999999977555 488999999995  454332333


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECC--CC--ceeeeeee---eeEEEEEeeE
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--TL--NHTSQVLL---ISHIMFVQIV  686 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~--~g--~~~~~l~~---i~~~~fs~~~  686 (701)
                      +..+..++. ....+..++|+|+|+++++ + .++.|.+||+.  ++  +.+..++.   +.+++|+|+.
T Consensus       220 ~~~~~~~~~-~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  288 (343)
T 1ri6_A          220 LDMMPENFS-DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG  288 (343)
T ss_dssp             EECSCTTCC-SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS
T ss_pred             ccccCcccc-ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCC
Confidence            332333321 1146778999999998886 4 68999999998  33  44545543   7788888763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=1.8e-18  Score=181.71  Aligned_cols=247  Identities=10%  Similarity=0.040  Sum_probs=164.6

Q ss_pred             eEEEEEcCCCCeEEEEcC---CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~---d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~  470 (701)
                      +..++|+|||+ |++++.   ++.|.+|++.    .+....+.. ...+...+..++|+|||+++++++ .++.+.+|++
T Consensus        42 p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~----~g~~~~~~~-~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           42 PTYLALSAKDC-LYSVDKEDDEGGIAAWQID----GQTAHKLNT-VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             CCCEEECTTCE-EEEEEEETTEEEEEEEEEE----TTEEEEEEE-EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cceEEEccCCe-EEEEEecCCCceEEEEEec----CCcEEEeee-eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            66799999999 555443   6899999996    554333221 112456788999999999999888 5799999987


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeeccc-------CCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC-CCcEE-
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIA-------ADPKDSISCFALR--GSHLFSAS-GGKISIFSLE-TFQTL-  538 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~-------~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~-~~~~~-  538 (701)
                      .....                  ...+.....       ......+.+++|+  |+.+++.. ++.|++||+. +++.. 
T Consensus       116 ~~~g~------------------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~  177 (347)
T 3hfq_A          116 AADGA------------------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSE  177 (347)
T ss_dssp             CTTSC------------------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             CCCCC------------------eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEE
Confidence            32100                  001100000       0123458889999  77444444 7899999998 55432 


Q ss_pred             -EEecC-CCCCeEEEEEcCCC-eEEE-EeCCCcEEEEeCCC--Cce--EEeecCCC------CCeEEEEEecCCCEE-EE
Q 005342          539 -ATFAN-PPPIATYFILLPQD-LFAF-GFDDSSILVHCPCT--KKT--KAKLKGHQ------NRITCLAYSLSLNVL-VS  603 (701)
Q Consensus       539 -~~~~~-~~~~i~~l~~spdg-~l~~-gs~dg~I~iwd~~~--~~~--~~~l~~h~------~~V~~v~~spdg~~l-~s  603 (701)
                       ..+.. ....+..++|+||| ++++ +..++.|.+|++..  ++.  +..+....      ..+..++|+|||++| ++
T Consensus       178 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~  257 (347)
T 3hfq_A          178 QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVS  257 (347)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred             eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEE
Confidence             22222 23467889999999 5555 56788999999874  443  23333222      348889999999977 56


Q ss_pred             EeCCCeEEEEECCC-CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEE--ECCCCceee
Q 005342          604 SGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVY--EAPTLNHTS  672 (701)
Q Consensus       604 ~s~D~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iw--d~~~g~~~~  672 (701)
                      +..++.|.+|++.. |..   ..+..+.. +.   ..+..++|+|||++|+++  .++.|.+|  |..+|+...
T Consensus       258 ~~~~~~v~v~~~~~~g~~---~~~~~~~~-~~---~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          258 NRGYNTLAVFAVTADGHL---TLIQQIST-EG---DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EETTTEEEEEEECGGGCE---EEEEEEEC-SS---SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             eCCCCEEEEEEECCCCcE---EEeEEEec-CC---CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            66799999999973 322   22322322 21   557899999999998885  46899999  556777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1.7e-17  Score=175.33  Aligned_cols=267  Identities=10%  Similarity=0.049  Sum_probs=172.1

Q ss_pred             eEEEEEcCCCCeEEEEcCC----CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEe
Q 005342          395 SRESTSLPDADSAVCAKSL----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWK  469 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d----~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd  469 (701)
                      +..++|+|||++|++++.+    +.+.+|++...  ++....+.. ...+......+++  +|+++++++. ++.+.+|+
T Consensus        52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~--~g~~~~~~~-~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~  126 (361)
T 3scy_A           52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE--KGTLHLLNT-QKTMGADPCYLTT--NGKNIVTANYSGGSITVFP  126 (361)
T ss_dssp             CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT--TTEEEEEEE-EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC--CCcEEEeeE-eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEE
Confidence            5679999999999998875    79999998621  244333321 1113456677777  8888888774 78999998


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCc-------E-
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQ-------T-  537 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~-------~-  537 (701)
                      +.....    . ............+..    ....+...+.+++|+  |+++++++  ++.|++|++....       . 
T Consensus       127 ~~~~g~----~-~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~  197 (361)
T 3scy_A          127 IGQDGA----L-LPASDVIEFKGSGPD----KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL  197 (361)
T ss_dssp             BCTTSC----B-CSCSEEEECCCCCSC----TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred             eCCCCc----C-cccceeEEccCCCCC----ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence            854211    0 000000000000000    001223456889999  77676665  6899999886433       1 


Q ss_pred             -----EEEecCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCce--EEee---cCCCCCeEEEEEecCCCEEEEEe
Q 005342          538 -----LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKT--KAKL---KGHQNRITCLAYSLSLNVLVSSG  605 (701)
Q Consensus       538 -----~~~~~~~~~~i~~l~~spdg-~l~~gs-~dg~I~iwd~~~~~~--~~~l---~~h~~~V~~v~~spdg~~l~s~s  605 (701)
                           .............++|+||| ++++++ .++.|.+||+.+++.  +..+   ..+...+..++|+|||++|++++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~  277 (361)
T 3scy_A          198 TKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN  277 (361)
T ss_dssp             EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE
T ss_pred             ecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC
Confidence                 11122345567899999999 776666 689999999987754  2323   22344578999999999886665


Q ss_pred             C--CCeEEEEECC--CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEE--ECCCCceeeeeee-
Q 005342          606 A--DAQLCVWDAV--GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVY--EAPTLNHTSQVLL-  676 (701)
Q Consensus       606 ~--D~~I~vwd~~--~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iw--d~~~g~~~~~l~~-  676 (701)
                      .  ++.|.+|++.  +|+......   +..+     ..+.+++|+|||++|+++  .++.|.+|  |..+|+....... 
T Consensus       278 ~~~~~~i~v~~~~~~~g~~~~~~~---~~~g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~  349 (361)
T 3scy_A          278 RLKADGVAIFKVDETNGTLTKVGY---QLTG-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDI  349 (361)
T ss_dssp             CSSSCEEEEEEECTTTCCEEEEEE---EECS-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCE
T ss_pred             CCCCCEEEEEEEcCCCCcEEEeeE---ecCC-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceee
Confidence            5  4899999996  454322222   2222     567899999999998885  57889996  5557776554322 


Q ss_pred             ----eeEEEEE
Q 005342          677 ----ISHIMFV  683 (701)
Q Consensus       677 ----i~~~~fs  683 (701)
                          ++++.|.
T Consensus       350 ~~~~p~~v~~~  360 (361)
T 3scy_A          350 KVDKPVCLKFV  360 (361)
T ss_dssp             ECSSEEEEEEE
T ss_pred             eCCCCeEEEEc
Confidence                6677665

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=2.5e-18  Score=179.06  Aligned_cols=249  Identities=8%  Similarity=0.009  Sum_probs=172.3

Q ss_pred             EEcCCCCe-EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCcc
Q 005342          399 TSLPDADS-AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQS  476 (701)
Q Consensus       399 ~~spdg~~-l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~  476 (701)
                      .|.+++.+ +++++.++.|.+||..    +++..... .  .+...+ +++|+|||+++++++. ++.|.+||.      
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~----~~~~~~~~-~--~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~------   69 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTD----TLEILNQI-T--LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET------   69 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETT----TCCEEEEE-E--CCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC------
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCc----ccceeeeE-E--ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC------
Confidence            45665555 7788889999999997    56554322 1  234556 9999999998777776 889999965      


Q ss_pred             ccccccceeeEEeeCCCCeE-EeecccCCCCCCeEEEEec--CCEEEEEe-C-C--eEEEEeCCCCcEEEEecCCCCCeE
Q 005342          477 LEEENVNMESQLYQPSSKLV-MTNDIAADPKDSISCFALR--GSHLFSAS-G-G--KISIFSLETFQTLATFANPPPIAT  549 (701)
Q Consensus       477 ~g~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d-g--~I~iwd~~~~~~~~~~~~~~~~i~  549 (701)
                                     .+++. ... + ..+..+..+++++  |++++++. + +  .|.+||+.+++.+..+.. .....
T Consensus        70 ---------------~~~~~~~~~-~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~  131 (331)
T 3u4y_A           70 ---------------QLEPPKVVA-I-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAV  131 (331)
T ss_dssp             ---------------SSSSCEEEE-E-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEE
T ss_pred             ---------------CCCceeEEe-c-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCcc
Confidence                           34443 211 2 1234444448898  88888555 3 3  999999999998888774 44568


Q ss_pred             EEEEcCCC-eE-EEEeCCCc-EEEEeCCCCceE-----EeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCee
Q 005342          550 YFILLPQD-LF-AFGFDDSS-ILVHCPCTKKTK-----AKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       550 ~l~~spdg-~l-~~gs~dg~-I~iwd~~~~~~~-----~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~  620 (701)
                      +++|+|+| ++ +++..++. |.+|++.....+     ..+ .+...+..++|+|+|++++ ++..++.|++||+.+++.
T Consensus       132 ~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          132 GIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             EEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             ceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            99999999 44 45566688 999998754332     222 2345689999999999654 555689999999998864


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCce--eeeeee-----------eeEEEEEee
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH--TSQVLL-----------ISHIMFVQI  685 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~--~~~l~~-----------i~~~~fs~~  685 (701)
                      .  ..+..+..+     ..+..++|+|||++++++  .++.|.+||..+++.  +..+..           ...++|+|+
T Consensus       211 ~--~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  283 (331)
T 3u4y_A          211 I--TLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKT  283 (331)
T ss_dssp             C--EEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTT
T ss_pred             c--ceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCC
Confidence            1  112223322     566889999999988764  578899999999887  333332           345788877


Q ss_pred             EE
Q 005342          686 VV  687 (701)
Q Consensus       686 ~~  687 (701)
                      ..
T Consensus       284 g~  285 (331)
T 3u4y_A          284 ET  285 (331)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=9.5e-19  Score=202.39  Aligned_cols=261  Identities=10%  Similarity=0.007  Sum_probs=177.0

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC--
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS--  472 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~--  472 (701)
                      |.+++|||| ..++.+. ++.+++||+.    +++...+..    +...+.+++|||||++|+++ .++.|.+|++.+  
T Consensus        84 v~~~~~spd-~~~~~~~-~~~i~~~d~~----~~~~~~l~~----~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~  152 (706)
T 2z3z_A           84 SFRTLDAGR-GLVVLFT-QGGLVGFDML----ARKVTYLFD----TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLG  152 (706)
T ss_dssp             CEEEEETTT-TEEEEEE-TTEEEEEETT----TTEEEEEEC----CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTT
T ss_pred             ceeEEECCC-CeEEEEE-CCEEEEEECC----CCceEEccC----CcccccCCcCCCCCCEEEEE-ECCeEEEEecCccc
Confidence            899999999 6665554 4999999997    665555432    45668889999999998884 679999998754  


Q ss_pred             ---CCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEec--CCEEEEEe-C---------------------
Q 005342          473 ---NKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR--GSHLFSAS-G---------------------  524 (701)
Q Consensus       473 ---~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s--~~~l~s~s-d---------------------  524 (701)
                         +....          +.......+..- .....+...+.+++|+  |++|++++ |                     
T Consensus       153 ~~~g~~~~----------~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~  222 (706)
T 2z3z_A          153 EGMSRAIA----------VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP  222 (706)
T ss_dssp             SCCCCCEE----------SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEE
T ss_pred             ccCCCcEE----------eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEE
Confidence               32100          000000000000 0000112235788998  88888775 2                     


Q ss_pred             ------------CeEEEEeCCCCcEEEEec--CCCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEEeec-
Q 005342          525 ------------GKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAKLK-  583 (701)
Q Consensus       525 ------------g~I~iwd~~~~~~~~~~~--~~~~~i~~l~~spdg-~l~~gs~dg-----~I~iwd~~~~~~~~~l~-  583 (701)
                                  ..|++||+.+++......  .+...+.+++|+||| .|++++.++     .|++||+.+++....+. 
T Consensus       223 ~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~  302 (706)
T 2z3z_A          223 LYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV  302 (706)
T ss_dssp             ECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             eeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE
Confidence                        579999999887654442  355678999999999 888887775     89999999984333332 


Q ss_pred             C-CCC---CeEEEEEec--CCCEEEEEeCCCeEEEEECC-CCeeeeeeeeeeccCCCCCCCCCeEE-EEEcCCCCEEEE-
Q 005342          584 G-HQN---RITCLAYSL--SLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLS-  654 (701)
Q Consensus       584 ~-h~~---~V~~v~~sp--dg~~l~s~s~D~~I~vwd~~-~g~~~~~~~l~~~~~~~~~~~~~v~~-v~~spdg~~l~s-  654 (701)
                      . +..   .+.+++|+|  ||+++++++.|+.+++|++. ++.     .+..+. .+.   ..+.+ ++|+|||+.|+. 
T Consensus       303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~-----~~~~l~-~~~---~~v~~~~~~spdg~~l~~~  373 (706)
T 2z3z_A          303 ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR-----LIRQVT-KGE---WEVTNFAGFDPKGTRLYFE  373 (706)
T ss_dssp             EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC-----EEEECC-CSS---SCEEEEEEECTTSSEEEEE
T ss_pred             ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC-----EEEecC-CCC---eEEEeeeEEcCCCCEEEEE
Confidence            2 222   346789999  99999999999999999876 332     122233 332   56766 799999998876 


Q ss_pred             E-ecC----eEEEEECCCCceeeeeee---eeEEEEEeeE
Q 005342          655 I-HEG----QIDVYEAPTLNHTSQVLL---ISHIMFVQIV  686 (701)
Q Consensus       655 g-~Dg----~I~iwd~~~g~~~~~l~~---i~~~~fs~~~  686 (701)
                      + .++    .|..||..+++. ..+..   +.+++|||+.
T Consensus       374 ~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~spdg  412 (706)
T 2z3z_A          374 STEASPLERHFYCIDIKGGKT-KDLTPESGMHRTQLSPDG  412 (706)
T ss_dssp             ESSSCTTCBEEEEEETTCCCC-EESCCSSSEEEEEECTTS
T ss_pred             ecCCCCceEEEEEEEcCCCCc-eeccCCCceEEEEECCCC
Confidence            4 344    677788877763 33333   8889999874

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.81  E-value=3.8e-18  Score=177.64  Aligned_cols=251  Identities=12%  Similarity=0.033  Sum_probs=178.7

Q ss_pred             CcccccccCccceeEEEeecCc--ceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMD--WWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLD  376 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~--~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (701)
                      +.|.+||..+++.+..+.....  .+.  .++|+|+        +.++.|.+||+.+++....+          ....  
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~----------~~~~--   76 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADAGPTPM--VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI----------DLST--   76 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCC--CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE----------ECCB--
T ss_pred             CeEEEEECCCCcEEEEEEcCCCCCCcc--ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeE----------EcCC--
Confidence            7899999999999988874432  367  8999998        66889999999998876652          1100  


Q ss_pred             cccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEc------------CCCcEEEEeccccCCCCceeEeecCCCCCCCC
Q 005342          377 ASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAK------------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGR  443 (701)
Q Consensus       377 ~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s------------~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~  443 (701)
                                  ...|.. +..++|+|||+++++++            .++.|.+||+.    +++.... ++   ....
T Consensus        77 ------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~----~~~~~~~-~~---~~~~  136 (337)
T 1pby_B           77 ------------PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE----TLSRRKA-FE---APRQ  136 (337)
T ss_dssp             ------------TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT----TTEEEEE-EE---CCSS
T ss_pred             ------------cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC----CCcEEEE-Ee---CCCC
Confidence                        000122 55789999999999886            57999999997    5543331 11   1345


Q ss_pred             EEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCC-CCCeEEEEec--CCEEE
Q 005342          444 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHLF  520 (701)
Q Consensus       444 v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~l~~s--~~~l~  520 (701)
                      +.+++|+|||++++++  ++.+.+||+.+                     ++.... +..+. ..++   .++  |..++
T Consensus       137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~---------------------~~~~~~-~~~~~~~~~~---~~s~dg~~l~  189 (337)
T 1pby_B          137 ITMLAWARDGSKLYGL--GRDLHVMDPEA---------------------GTLVED-KPIQSWEAET---YAQPDVLAVW  189 (337)
T ss_dssp             CCCEEECTTSSCEEEE--SSSEEEEETTT---------------------TEEEEE-ECSTTTTTTT---BCCCBCCCCC
T ss_pred             cceeEECCCCCEEEEe--CCeEEEEECCC---------------------CcEeee-eeccccCCCc---eeCCCccEEe
Confidence            7788999999988887  68899997643                     332211 11111 1111   233  33332


Q ss_pred             EEe--CC-----------------------eEEEEeCCCCcEE-EEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 005342          521 SAS--GG-----------------------KISIFSLETFQTL-ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP  573 (701)
Q Consensus       521 s~s--dg-----------------------~I~iwd~~~~~~~-~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~  573 (701)
                      ..+  ++                       .|.+||+.+++.. ..+..+...+.+++|+|+| +++++  ++.|++||+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~  267 (337)
T 1pby_B          190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC
Confidence            222  11                       5899999988764 2233455678899999999 87777  799999999


Q ss_pred             CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          574 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       574 ~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      .+++.+..+..+ ..+.+++|+|+|++|++++.++.|++||+.+++..
T Consensus       268 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          268 EKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             TTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            999888877644 45789999999999998999999999999998644

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=7.4e-18  Score=176.50  Aligned_cols=234  Identities=11%  Similarity=0.036  Sum_probs=169.4

Q ss_pred             EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEecCCCCc
Q 005342          398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQ  475 (701)
Q Consensus       398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~  475 (701)
                      ++++++++++++++.++.|.+||+.    +++... +..  . ....+..++|+|||+++++++ .++.|.+||.     
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~----~~~~~~~~~~--~-~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~-----   72 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVA----SDTVYKSCVM--P-DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL-----   72 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETT----TTEEEEEEEC--S-SCCSSCEEEECTTSSEEEEEETTTTEEEEEET-----
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECC----CCcEEEEEec--C-CCCCCceeEECCCCCEEEEEeCCCCcEEEEeC-----
Confidence            5678899999999999999999997    555433 222  1 112577899999999766554 5889999965     


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCC-----CCCeEEEEec--CCEEEEEe-C------------CeEEEEeCCCC
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCFALR--GSHLFSAS-G------------GKISIFSLETF  535 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~v~~l~~s--~~~l~s~s-d------------g~I~iwd~~~~  535 (701)
                                      .+++.... +...+     ...+.+++|+  |+++++++ +            +.|.+||+.++
T Consensus        73 ----------------~t~~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  135 (349)
T 1jmx_B           73 ----------------DTCKNTFH-ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  135 (349)
T ss_dssp             ----------------TTTEEEEE-EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             ----------------CCCcEEEE-EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence                            44443321 11111     2236788898  88888887 5            99999999885


Q ss_pred             c---EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-------------------------
Q 005342          536 Q---TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-------------------------  586 (701)
Q Consensus       536 ~---~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-------------------------  586 (701)
                      +   .+..+. +...+.+++|+|+| .++ +  ++.|++||..+++.+..+..+.                         
T Consensus       136 ~~~~~~~~~~-~~~~~~~~~~s~dg~l~~-~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (349)
T 1jmx_B          136 LEAKPVRTFP-MPRQVYLMRAADDGSLYV-A--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS  211 (349)
T ss_dssp             GGBCCSEEEE-CCSSCCCEEECTTSCEEE-E--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred             cccceeeecc-CCCcccceeECCCCcEEE-c--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence            4   334444 33468899999999 555 3  3459999999988777665331                         


Q ss_pred             -------------------------------------------CCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          587 -------------------------------------------NRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       587 -------------------------------------------~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                                                                 ..+.+++|+| +|++++++  ++.|++||+.+++...
T Consensus       212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~  289 (349)
T 1jmx_B          212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK  289 (349)
T ss_dssp             EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred             eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence                                                       1345677889 99998888  8899999999986432


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                        .   +..+     ..+.+++|+|||++|+++ .++.|++||+.+++.+..++.
T Consensus       290 --~---~~~~-----~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          290 --A---ANLD-----HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             --E---EECS-----SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             --E---EcCC-----CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence              2   2222     446789999999988876 789999999999998887754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=6.7e-17  Score=169.65  Aligned_cols=262  Identities=7%  Similarity=-0.008  Sum_probs=173.4

Q ss_pred             ccccccc--CccceeE-EEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342          308 KLKFPSM--DKSRLLS-LIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL  375 (701)
Q Consensus       308 ~i~iwd~--~~~~~~~-~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (701)
                      .|.+|++  .+++... ....+...+.  .++|+||         +.++.|.+||+.++.....-               
T Consensus        17 ~i~v~~~d~~tg~~~~~~~~~~~~~p~--~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~---------------   79 (347)
T 3hfq_A           17 GIYQGTLDTTAKTLTNDGLLAATQNPT--YLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLN---------------   79 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEECSCCC--CEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEE---------------
T ss_pred             CEEEEEEcCCCCeEEEeeeeeccCCcc--eEEEccCCeEEEEEecCCCceEEEEEecCCcEEEee---------------
Confidence            3445554  4565543 2344556677  8999999         23689999999776642220               


Q ss_pred             ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEc-CCCcEEEEeccccCCCCceeEee-cCCCC-------CCCCEE
Q 005342          376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAK-SLEKSVNLKLQLINEPSECRTLL-LPDNS-------FGGRVV  445 (701)
Q Consensus       376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s-~d~~v~iw~~~~~~~~~~~~~l~-~~~~~-------~~~~v~  445 (701)
                                  .+..+.. +..++|+|||++|++++ .++.+.+|++..   .+....+. ....+       ....+.
T Consensus        80 ------------~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~---~g~~~~~~~~~~~~~~p~~~~~~~~~~  144 (347)
T 3hfq_A           80 ------------TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA---DGALTLTDTVQHSGHGPRPEQDGSHIH  144 (347)
T ss_dssp             ------------EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT---TSCEEEEEEEECCCCCSSTTCSSCCEE
T ss_pred             ------------eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC---CCCeeecceeecCCCCCCccccCCCce
Confidence                        0112333 67899999999888887 779999999963   23322222 11111       123588


Q ss_pred             EEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe-ecccCCCCCCeEEEEec--CCEEEEE
Q 005342          446 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR--GSHLFSA  522 (701)
Q Consensus       446 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v~~l~~s--~~~l~s~  522 (701)
                      +++|+|||+.+++...++.+.+|++..                    ++.+.. ..+.......+..++|+  |++++++
T Consensus       145 ~~~~spdg~l~v~~~~~~~v~~~~~~~--------------------~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~  204 (347)
T 3hfq_A          145 YTDLTPDNRLAVIDLGSDKVYVYNVSD--------------------AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA  204 (347)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECT--------------------TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCcEEEEeCCCCEEEEEEECC--------------------CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE
Confidence            999999999555555588999998731                    222111 00111223467789999  7766665


Q ss_pred             e--CCeEEEEeCCC--CcE--EEEecCCC------CCeEEEEEcCCC-eE-EEEeCCCcEEEEeCCC---CceEEeecCC
Q 005342          523 S--GGKISIFSLET--FQT--LATFANPP------PIATYFILLPQD-LF-AFGFDDSSILVHCPCT---KKTKAKLKGH  585 (701)
Q Consensus       523 s--dg~I~iwd~~~--~~~--~~~~~~~~------~~i~~l~~spdg-~l-~~gs~dg~I~iwd~~~---~~~~~~l~~h  585 (701)
                      +  ++.|.+|++..  ++.  +..+....      ..+..++|+||| ++ +++..++.|.+||+..   .+.+..+..+
T Consensus       205 ~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~  284 (347)
T 3hfq_A          205 GELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE  284 (347)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS
T ss_pred             eCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC
Confidence            4  79999999874  442  23333222      347899999999 66 5666789999999873   2456666666


Q ss_pred             CCCeEEEEEecCCCEEEEEeC-CCeEEEE--ECCCCeee
Q 005342          586 QNRITCLAYSLSLNVLVSSGA-DAQLCVW--DAVGWKKL  621 (701)
Q Consensus       586 ~~~V~~v~~spdg~~l~s~s~-D~~I~vw--d~~~g~~~  621 (701)
                      ...+..++|+|||++|++++. ++.|.+|  |..+|+..
T Consensus       285 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          285 GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            667899999999998887775 4899999  55667543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=9.6e-19  Score=202.82  Aligned_cols=290  Identities=12%  Similarity=0.040  Sum_probs=193.1

Q ss_pred             EEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeE
Q 005342          334 CINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSA  407 (701)
Q Consensus       334 ~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l  407 (701)
                      .++|+||      +.|++|++||+.+++....          +.++..               ....+.+++|||||++|
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~----------~~~~~~---------------~~~~~~~~~~SpDg~~l   74 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTI----------LSNRTM---------------KSVNASNYGLSPDRQFV   74 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEE----------ECHHHH---------------HTTTCSEEEECTTSSEE
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEE----------Eccccc---------------cccceeeEEECCCCCeE
Confidence            6788888      5799999999999987665          222110               00126789999999999


Q ss_pred             EEEcC---------CCcEEEEeccccCCCCce---eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342          408 VCAKS---------LEKSVNLKLQLINEPSEC---RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       408 ~s~s~---------d~~v~iw~~~~~~~~~~~---~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  475 (701)
                      ++++.         ++.+++||+.    +++.   ..  +     ...+.+++|||||+.|++++ ++.|++|++.++..
T Consensus        75 a~~~~~~~~~~~s~~~~i~~~d~~----~g~~~~~~~--l-----~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~  142 (719)
T 1z68_A           75 YLESDYSKLWRYSYTATYYIYDLS----NGEFVRGNE--L-----PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP  142 (719)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETT----TTEECCSSC--C-----CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred             EEEecCceeEEeecceEEEEEECC----CCcccccee--c-----CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence            99876         7899999997    6654   22  1     25688899999999998875 78999997644321


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCC---------CCeEEEEec--CCEEEEEe-CC------------------
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPK---------DSISCFALR--GSHLFSAS-GG------------------  525 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~---------~~v~~l~~s--~~~l~s~s-dg------------------  525 (701)
                      ..  ...       +.....+.     .++.         ....+++||  |++|++++ |.                  
T Consensus       143 ~~--l~~-------~~~~~~v~-----~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~  208 (719)
T 1z68_A          143 FQ--ITF-------NGRENKIF-----NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPR  208 (719)
T ss_dssp             EE--CCC-------CCBTTTEE-----ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCE
T ss_pred             EE--Eec-------CCCcCCeE-----cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcc
Confidence            00  000       00000000     0111         122478999  88888877 42                  


Q ss_pred             ----------------eEEEEeCCCCcEE--------EEecCCCCCeEEEEEcCCC-eEEEEeCCC----cEEEEe----
Q 005342          526 ----------------KISIFSLETFQTL--------ATFANPPPIATYFILLPQD-LFAFGFDDS----SILVHC----  572 (701)
Q Consensus       526 ----------------~I~iwd~~~~~~~--------~~~~~~~~~i~~l~~spdg-~l~~gs~dg----~I~iwd----  572 (701)
                                      .|++||+.+++..        ..+.++...+.+++|+||+ ++++....+    .|++||    
T Consensus       209 ~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~  288 (719)
T 1z68_A          209 TINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRED  288 (719)
T ss_dssp             EEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSS
T ss_pred             ceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCC
Confidence                            7899999887643        1233567788999999999 776644332    489999    


Q ss_pred             CCCCceEEee----cCCCCCeE-----EEEEecCCCEEEE--EeCCC--eEEEEECCCCeeeeeeeeeeccCCCCCCCCC
Q 005342          573 PCTKKTKAKL----KGHQNRIT-----CLAYSLSLNVLVS--SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTI  639 (701)
Q Consensus       573 ~~~~~~~~~l----~~h~~~V~-----~v~~spdg~~l~s--~s~D~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~  639 (701)
                      ..+++....+    .+|.+.+.     .++|+|||+.++.  +..++  .|++||+.+++.   ..   +..+.    ..
T Consensus       289 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~---lt~~~----~~  358 (719)
T 1z68_A          289 WQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQ---ITSGK----WE  358 (719)
T ss_dssp             SSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EE---CSCSS----SC
T ss_pred             CCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---Ee---cccCc----eE
Confidence            8888776666    46777776     8899999995543  44555  678888877641   22   22222    56


Q ss_pred             eEEEEEcCCCCEEEE-Ee-----cCeEEEEECCC--Cc-eeeeee-------e-eeEEEEEee
Q 005342          640 VNHIQFHPDQIHLLS-IH-----EGQIDVYEAPT--LN-HTSQVL-------L-ISHIMFVQI  685 (701)
Q Consensus       640 v~~v~~spdg~~l~s-g~-----Dg~I~iwd~~~--g~-~~~~l~-------~-i~~~~fs~~  685 (701)
                      +..+.++ +++.++. +.     ++..++|.+..  +. ....+.       . +..+.|||+
T Consensus       359 v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~d  420 (719)
T 1z68_A          359 AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDY  420 (719)
T ss_dssp             EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGG
T ss_pred             EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCC
Confidence            7888888 8887776 43     37788888753  42 122222       1 667888875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=4.7e-18  Score=191.97  Aligned_cols=258  Identities=9%  Similarity=-0.028  Sum_probs=183.4

Q ss_pred             ceeeeEEEEccC-------CC-CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEE
Q 005342          329 WWVPYCINVMPN-------AN-NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SREST  399 (701)
Q Consensus       329 ~v~~~~l~fspd-------s~-d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~  399 (701)
                      .|+  +++|+||       +. |++++||++.++...+..                             ..+.. +..++
T Consensus        23 ~~~--~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt-----------------------------~~~~~~~~~~~   71 (582)
T 3o4h_A           23 EKY--SLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN-----------------------------REPINSVLDPH   71 (582)
T ss_dssp             CEE--EEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC-----------------------------SSCCSEECEEC
T ss_pred             chh--eeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee-----------------------------ccccccccccc
Confidence            577  9999999       33 899999999776654431                             12324 88999


Q ss_pred             EcCCCCeEEEEcC---CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE-EEEECCCcEEEEecCCCCc
Q 005342          400 SLPDADSAVCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       400 ~spdg~~l~s~s~---d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l-~s~s~dg~i~vwd~~~~~~  475 (701)
                      |+|| +.+++++.   +....+|.+......+. ..+.     ....+...+|+|||+.+ ++.+.++.+.+||+     
T Consensus        72 ~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~-~~l~-----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~-----  139 (582)
T 3o4h_A           72 YGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE-QRLE-----AVKPMRILSGVDTGEAVVFTGATEDRVALYAL-----  139 (582)
T ss_dssp             TTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC-EECT-----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEE-----
T ss_pred             CCCC-eEEEEeccCCCCcceEEEEEeccCCCcc-cccc-----CCCCceeeeeCCCCCeEEEEecCCCCceEEEc-----
Confidence            9999 77777764   55567766642111222 2221     12334567899998743 33344555558865     


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C----CeEEEEeCCCCcEEEEecCCCCCe
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFANPPPIA  548 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d----g~I~iwd~~~~~~~~~~~~~~~~i  548 (701)
                                      .+++...  +...+ .  .+++||  |+++++++ +    +.|++||+.+++.. .+..+...+
T Consensus       140 ----------------~~g~~~~--l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~  197 (582)
T 3o4h_A          140 ----------------DGGGLRE--LARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSF  197 (582)
T ss_dssp             ----------------ETTEEEE--EEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEE
T ss_pred             ----------------cCCcEEE--eecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCcc
Confidence                            4444332  11112 2  688888  99999776 6    68999999888754 567788889


Q ss_pred             EEEEEcCCC-eEEEEeCCC--cEEEEeCCCCceEEeecCCCCCeEEEE--------EecCCCEEEEEeCCCeEEEEECCC
Q 005342          549 TYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLA--------YSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       549 ~~l~~spdg-~l~~gs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~--------~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      ..++||||| .|+++..++  .|++||+.+++.. .+.+|...+..++        |+|||.++++++.|+++++|++  
T Consensus       198 ~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--  274 (582)
T 3o4h_A          198 SSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--  274 (582)
T ss_dssp             EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--
T ss_pred             ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--
Confidence            999999999 888888888  8999999998887 7778887777777        9999999999999999999999  


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC---eEEEEECCC
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG---QIDVYEAPT  667 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg---~I~iwd~~~  667 (701)
                      |+...         ...   +.+.+++|+ +|++++++ .+.   .+.+||..+
T Consensus       275 g~~~~---------~~~---~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          275 GERVE---------APQ---GNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             TEEEC---------CCS---SEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             CCeec---------cCC---CceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence            54221         111   668899999 99988874 443   477777643

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.79  E-value=2.3e-18  Score=199.67  Aligned_cols=325  Identities=8%  Similarity=-0.017  Sum_probs=216.8

Q ss_pred             CcccccccCccceeEEEeecCc---ceeeeEEEEccC-------CC---------CCeEEEEeccCCccccccccccCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMD---WWVPYCINVMPN-------AN---------NETISLKDFPTVSNLRYASSILTDK  367 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~---~v~~~~l~fspd-------s~---------d~~i~lWd~~~~~~~~~~~~~~~~~  367 (701)
                      +.|++||..+++....+.+|..   .+.  +++||||       +.         +++|++||+.+++.+...       
T Consensus        36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-------  106 (719)
T 1z68_A           36 NNIVLYNIETGQSYTILSNRTMKSVNAS--NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-------  106 (719)
T ss_dssp             SCEEEEESSSCCEEEEECHHHHHTTTCS--EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-------
T ss_pred             CCEEEEEcCCCcEEEEEcccccccccee--eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-------
Confidence            7899999999999888877654   377  9999999       22         689999999998763210       


Q ss_pred             CCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCE---
Q 005342          368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRV---  444 (701)
Q Consensus       368 ~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v---  444 (701)
                       .+.                     ..+..++|||||+.||++. ++.|++|++.    +++...+.  ..++...|   
T Consensus       107 -~l~---------------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~----~g~~~~l~--~~~~~~~v~~g  157 (719)
T 1z68_A          107 -ELP---------------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRP----GDPPFQIT--FNGRENKIFNG  157 (719)
T ss_dssp             -CCC---------------------SSBCCEEECSSTTCEEEEE-TTEEEEESST----TSCCEECC--CCCBTTTEEES
T ss_pred             -ecC---------------------cccccceECCCCCEEEEEE-CCeEEEEeCC----CCCcEEEe--cCCCcCCeEcc
Confidence             010                     1156799999999999986 6899999997    55544432  12222222   


Q ss_pred             --------------EEEEEecCCCEEEEEECC-CcEEEEecCCCC---c---------cccccccceeeEEeeCCCCeEE
Q 005342          445 --------------VRLIYSHSGDFLVALTQT-ATHKLWKWQSNK---Q---------SLEEENVNMESQLYQPSSKLVM  497 (701)
Q Consensus       445 --------------~~l~~spdg~~l~s~s~d-g~i~vwd~~~~~---~---------~~g~~~~~~~i~~~d~~~~~~~  497 (701)
                                    .+++|||||++|++++.| +.+.+|.+....   .         ..|.......+.+||..++...
T Consensus       158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~  237 (719)
T 1z68_A          158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV  237 (719)
T ss_dssp             SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred             cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence                          489999999999998865 444444331100   0         2233334456788898887642


Q ss_pred             ---eecc---cCCCCCCeEEEEec--CCEEEEEe-C----CeEEEEe----CCCCcEEEEe----cCCCCCeE-----EE
Q 005342          498 ---TNDI---AADPKDSISCFALR--GSHLFSAS-G----GKISIFS----LETFQTLATF----ANPPPIAT-----YF  551 (701)
Q Consensus       498 ---~~~~---~~~~~~~v~~l~~s--~~~l~s~s-d----g~I~iwd----~~~~~~~~~~----~~~~~~i~-----~l  551 (701)
                         ....   ..+|...+.+++|+  ++++++.. .    ..|.+||    ..+++....+    .++...+.     .+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  317 (719)
T 1z68_A          238 GPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTP  317 (719)
T ss_dssp             CCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCC
T ss_pred             ceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCcc
Confidence               1000   01467789999999  55555533 2    3589999    8777765544    35666665     88


Q ss_pred             EEcCCC-eEEE--EeCCC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCC--Ce
Q 005342          552 ILLPQD-LFAF--GFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVG--WK  619 (701)
Q Consensus       552 ~~spdg-~l~~--gs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~--g~  619 (701)
                      +|+||| .++.  +..+|  .|++||+.+++ ...+..+...+..+.++ +++.|+..+.+     +.+++|.+..  +.
T Consensus       318 ~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~  395 (719)
T 1z68_A          318 VFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYP  395 (719)
T ss_dssp             EECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSS
T ss_pred             EECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCC
Confidence            999999 5443  44555  68888987776 45566666678888888 88877766654     7888888764  31


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ec--CeEEEEECCCCceeeeee
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~D--g~I~iwd~~~g~~~~~l~  675 (701)
                      . ....+.....++.   ..+..+.|+||+++++. + .+  ..+.+||+.+|++++.+.
T Consensus       396 ~-~~~~l~~~~~~~~---~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          396 P-SKKCVTCHLRKER---CQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             C-CEEESSTTTTTTT---BCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             C-CceeccCccCCCC---CceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence            1 0122220011233   67889999999988775 3 22  468999998888665443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=2.5e-18  Score=186.42  Aligned_cols=214  Identities=14%  Similarity=0.102  Sum_probs=153.7

Q ss_pred             CCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc--ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C
Q 005342          441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS--LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  516 (701)
Q Consensus       441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~--~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~  516 (701)
                      ...+..+++++++.++++++.++ +++|+.......  .+....    .+........    +  .+...|.+++|+  |
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~--~~~~~v~~l~~spdg  104 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPN----KIVDKVQGLL----V--PMKFPIHHLALSCDN  104 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTT----CEEECCCCEE----E--CCSSCEEEEEECTTS
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcc----cccccCcccc----c--cCCCcccEEEEcCCC
Confidence            34678899999999999999888 888865221000  000000    0000000000    1  356789999999  8


Q ss_pred             CEEE----EEe-CCeEEEEeCCCC--------c---EEEEecCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCce
Q 005342          517 SHLF----SAS-GGKISIFSLETF--------Q---TLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKT  578 (701)
Q Consensus       517 ~~l~----s~s-dg~I~iwd~~~~--------~---~~~~~~~~~~~i~~l~~spd-g-~l~~gs~dg~I~iwd~~~~~~  578 (701)
                      ++|+    +++ |+.|++||+.++        +   ....+.+|...|.+++|+|+ + ++++++.||+|++||++++..
T Consensus       105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~  184 (434)
T 2oit_A          105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK  184 (434)
T ss_dssp             CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred             CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence            8888    677 899999998654        2   24556678899999999998 5 999999999999999999877


Q ss_pred             EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--e
Q 005342          579 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H  656 (701)
Q Consensus       579 ~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~  656 (701)
                      +....+|...|++++|+|+|++|++|+.||+|++||++ ++..  ..+......+..+...|.+++|++++.++++.  .
T Consensus       185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~--~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~  261 (434)
T 2oit_A          185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK--KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA  261 (434)
T ss_dssp             EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE--EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred             eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc--ccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence            77777899999999999999999999999999999998 4322  22220000000011489999999999888763  3


Q ss_pred             cC------eEEEEECCCC
Q 005342          657 EG------QIDVYEAPTL  668 (701)
Q Consensus       657 Dg------~I~iwd~~~g  668 (701)
                      ||      .+++|++.+.
T Consensus       262 dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          262 DGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TCCSSSCCEEEEEECCCT
T ss_pred             CCccCCCCceEEEEeccC
Confidence            43      3899999765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=6.9e-18  Score=182.90  Aligned_cols=254  Identities=8%  Similarity=-0.025  Sum_probs=170.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCC-------CceeEeec-CCCCCCCCEEEEEEecCCCEEE----EEECC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP-------SECRTLLL-PDNSFGGRVVRLIYSHSGDFLV----ALTQT  462 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~-------~~~~~l~~-~~~~~~~~v~~l~~spdg~~l~----s~s~d  462 (701)
                      ++.+++++++.++++++.|+ +++|+.......       ........ ....+...|.+++|+|+|++|+    +|+.|
T Consensus        39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d  117 (434)
T 2oit_A           39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG  117 (434)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred             ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence            66799999999999999887 899886532110       11111000 0002456799999999999999    67779


Q ss_pred             CcEEEEecCCCCccccccccceeeEEeeC-CCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcE
Q 005342          463 ATHKLWKWQSNKQSLEEENVNMESQLYQP-SSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT  537 (701)
Q Consensus       463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~  537 (701)
                      +.|++||+.+...  +..         .. ..-....  ...+|...|.+++|+   +.++++++ ||.|++||++++..
T Consensus       118 ~~v~iwd~~~~~~--~~~---------~~~~~~~~~~--~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~  184 (434)
T 2oit_A          118 SIIAFFDVRTFSN--EAK---------QQKRPFAYHK--LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK  184 (434)
T ss_dssp             EEEEEEEHHHHHC--TTC---------SSCCCSEEEE--CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred             ceEEEEEcccccc--CCc---------CCcceeeeee--ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence            9999998743200  000         00 0000111  224688999999999   57899998 99999999999877


Q ss_pred             EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC-------CCCeEEEEEecCCCEEEE-EeCCC
Q 005342          538 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-------QNRITCLAYSLSLNVLVS-SGADA  608 (701)
Q Consensus       538 ~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h-------~~~V~~v~~spdg~~l~s-~s~D~  608 (701)
                      +....+|...|++++|+|+| +|++|+.||.|++||++ ++....+..|       ...|.+++|++++.++++ ++.||
T Consensus       185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg  263 (434)
T 2oit_A          185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG  263 (434)
T ss_dssp             EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred             eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence            76677788899999999999 99999999999999998 5555555443       237999999999887754 44453


Q ss_pred             ------eEEEEECCCCeee---eeeeeeecc---CCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC
Q 005342          609 ------QLCVWDAVGWKKL---CSKFLHSFQ---TGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP  666 (701)
Q Consensus       609 ------~I~vwd~~~g~~~---~~~~l~~~~---~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~  666 (701)
                            .+++|++......   ....+..+.   ++..   .+-..+.+-++.++++++  ..+.|.|....
T Consensus       264 ~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTER---QHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             CSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSS---CCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             ccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCc---CcceeeehhccCCEEEEecCCCCceeEEEec
Confidence                  3999999864211   001111010   1222   333445555887777764  45557776653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.76  E-value=3.5e-16  Score=165.12  Aligned_cols=255  Identities=11%  Similarity=0.069  Sum_probs=168.5

Q ss_pred             CCeEEEE----cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC----CcEEEEecCCCCc
Q 005342          404 ADSAVCA----KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQSNKQ  475 (701)
Q Consensus       404 g~~l~s~----s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d----g~i~vwd~~~~~~  475 (701)
                      ..+++.|    +.++.|.+|.++.  .+++...+...   +...+..++|+|||++|++++.+    +.+.+|++     
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~--~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~-----   82 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNE--ETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAF-----   82 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEET--TTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEE-----
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeC--CCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEE-----
Confidence            3445555    3467899998752  13444443321   45667789999999999999886    79999977     


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe--CCeEEEEeCCCCcEEEE------ecC----
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS--GGKISIFSLETFQTLAT------FAN----  543 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s--dg~I~iwd~~~~~~~~~------~~~----  543 (701)
                                    +..++.+........+......++++++++++++  ++.|.+|++.+...+..      ..+    
T Consensus        83 --------------~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~  148 (361)
T 3scy_A           83 --------------DKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPD  148 (361)
T ss_dssp             --------------ETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSC
T ss_pred             --------------eCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCC
Confidence                          5554543211010123445666777777777766  79999999975432211      111    


Q ss_pred             ----CCCCeEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCc-------eE------EeecCCCCCeEEEEEecCCCEEEEE
Q 005342          544 ----PPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTKK-------TK------AKLKGHQNRITCLAYSLSLNVLVSS  604 (701)
Q Consensus       544 ----~~~~i~~l~~spdg-~l~~g-s~dg~I~iwd~~~~~-------~~------~~l~~h~~~V~~v~~spdg~~l~s~  604 (701)
                          +...+.+++|+|+| +++++ ..++.|++|++....       ..      .....+...+..++|+|||++++++
T Consensus       149 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  228 (361)
T 3scy_A          149 KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLI  228 (361)
T ss_dssp             TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEE
Confidence                12235789999999 56554 458899999877533       11      1112244567899999999988777


Q ss_pred             e-CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--e-cCeEEEEECC--CCc--eeeeeee
Q 005342          605 G-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEAP--TLN--HTSQVLL  676 (701)
Q Consensus       605 s-~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~-Dg~I~iwd~~--~g~--~~~~l~~  676 (701)
                      + .++.|.+||+.++.......+.....+.    .....++|+|||++|+++  . ++.|.+|++.  +|+  .+..+..
T Consensus       229 ~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~----~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~  304 (361)
T 3scy_A          229 NEIGGTVIAFRYADGMLDEIQTVAADTVNA----QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT  304 (361)
T ss_dssp             ETTTCEEEEEEEETTEEEEEEEEESCSSCC----CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred             cCCCCeEEEEEecCCceEEeEEEecCCCCC----CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC
Confidence            6 6899999999987644333343222222    556899999999998774  3 5789999995  455  4444443


Q ss_pred             ---eeEEEEEeeE
Q 005342          677 ---ISHIMFVQIV  686 (701)
Q Consensus       677 ---i~~~~fs~~~  686 (701)
                         +.+++|+|+.
T Consensus       305 g~~~~~~~~spdg  317 (361)
T 3scy_A          305 GIHPRNFIITPNG  317 (361)
T ss_dssp             SSCCCEEEECTTS
T ss_pred             CCCCceEEECCCC
Confidence               7889998874

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=1.4e-16  Score=184.97  Aligned_cols=322  Identities=8%  Similarity=-0.040  Sum_probs=211.7

Q ss_pred             CcccccccCccceeEEEeecCcceee---eEEEEccC-------CCC---------CeEEEEeccCCccccccccccCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVP---YCINVMPN-------ANN---------ETISLKDFPTVSNLRYASSILTDK  367 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~---~~l~fspd-------s~d---------~~i~lWd~~~~~~~~~~~~~~~~~  367 (701)
                      +.|++||+.++++...+.+|......   ..++||||       +.+         +.+.+||+.+++....        
T Consensus        36 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l--------  107 (740)
T 4a5s_A           36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE--------  107 (740)
T ss_dssp             TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS--------
T ss_pred             CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc--------
Confidence            78999999999999999888754320   13788999       222         6677999999876543        


Q ss_pred             CCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCE--
Q 005342          368 PNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRV--  444 (701)
Q Consensus       368 ~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v--  444 (701)
                                            ..|.. +..++|||||+.||.+. |+.|++|++.    ++...+++.  .++...+  
T Consensus       108 ----------------------~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~----~~~~~~lt~--~g~~~~~~~  158 (740)
T 4a5s_A          108 ----------------------ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEP----NLPSYRITW--TGKEDIIYN  158 (740)
T ss_dssp             ----------------------SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESST----TSCCEECCS--CCBTTTEEE
T ss_pred             ----------------------ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECC----CCceEEEcC--CCCccceec
Confidence                                  23445 88999999999999985 5899999997    565555432  2232223  


Q ss_pred             ---------------EEEEEecCCCEEEEEECC-CcEEEEecCCCCc--------------cccccccceeeEEeeCCC-
Q 005342          445 ---------------VRLIYSHSGDFLVALTQT-ATHKLWKWQSNKQ--------------SLEEENVNMESQLYQPSS-  493 (701)
Q Consensus       445 ---------------~~l~~spdg~~l~s~s~d-g~i~vwd~~~~~~--------------~~g~~~~~~~i~~~d~~~-  493 (701)
                                     .+++|||||++|+.++.| +.+.+|++.....              ..|.......+.+||..+ 
T Consensus       159 g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~  238 (740)
T 4a5s_A          159 GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL  238 (740)
T ss_dssp             SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred             CcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence                           358999999999998875 4488887632111              345555566789999998 


Q ss_pred             --C---eEEeecccC-----CCCCCeEEEEec--CCEEEEEe--C---CeEEEEeCCCCc----EE--EEe--cCCCCCe
Q 005342          494 --K---LVMTNDIAA-----DPKDSISCFALR--GSHLFSAS--G---GKISIFSLETFQ----TL--ATF--ANPPPIA  548 (701)
Q Consensus       494 --~---~~~~~~~~~-----~~~~~v~~l~~s--~~~l~s~s--d---g~I~iwd~~~~~----~~--~~~--~~~~~~i  548 (701)
                        +   ....  +..     ++...+..++|+  |+.++...  +   ..|++||+.+++    +.  ..+  .++...+
T Consensus       239 ~~~~~~~~~~--l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v  316 (740)
T 4a5s_A          239 SSVTNATSIQ--ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWV  316 (740)
T ss_dssp             CSSSCCCEEE--ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCS
T ss_pred             CCCCcceEEE--ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceE
Confidence              7   4332  211     367789999999  66555543  2   479999998887    22  222  3344444


Q ss_pred             E-----EEEEcCCC-eEE-EEe-CCC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-----C--eEE
Q 005342          549 T-----YFILLPQD-LFA-FGF-DDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-----A--QLC  611 (701)
Q Consensus       549 ~-----~l~~spdg-~l~-~gs-~dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-----~--~I~  611 (701)
                      .     .++|+||| .++ ..+ .+|  .|++||..+++...... ....|..+. .+|++.|+..+..     +  .|+
T Consensus       317 ~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly  394 (740)
T 4a5s_A          317 GRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLY  394 (740)
T ss_dssp             SSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEE
T ss_pred             ccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEE
Confidence            3     78999999 655 555 444  68999988776654433 344566654 3557766544433     2  455


Q ss_pred             EEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe----cCeEEEEECCCCceeeee
Q 005342          612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH----EGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       612 vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~----Dg~I~iwd~~~g~~~~~l  674 (701)
                      ..++.++...  ..+..-..+..   .....+.|||++++++...    -..+.+++..+++.+..+
T Consensus       395 ~v~~~g~~~~--~~lt~~~~~~~---~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l  456 (740)
T 4a5s_A          395 KIQLIDYTKV--TCLSCELNPER---CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL  456 (740)
T ss_dssp             EEETTEEEEE--EESSTTTSTTT---BCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCcc--eeeccccCCCC---CceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence            5555543211  12220001122   5688999999999887642    236889999888766554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=1.4e-16  Score=184.98  Aligned_cols=306  Identities=9%  Similarity=0.025  Sum_probs=184.8

Q ss_pred             EEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeE
Q 005342          334 CINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSA  407 (701)
Q Consensus       334 ~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l  407 (701)
                      .++|+||     +.|++|++||+.++++...          +.+|..              ..+.. ...++|||||++|
T Consensus        21 ~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~----------~~~~~~--------------~~~~~~~~~~~~Spdg~~l   76 (740)
T 4a5s_A           21 SLRWISDHEYLYKQENNILVFNAEYGNSSVF----------LENSTF--------------DEFGHSINDYSISPDGQFI   76 (740)
T ss_dssp             CEEECSSSEEEEEETTEEEEEETTTCCEEEE----------ECTTTT--------------TTCCSCCCEEEECTTSSEE
T ss_pred             ccEECCCCcEEEEcCCcEEEEECCCCceEEE----------Eechhh--------------hhhcccccceEECCCCCEE
Confidence            7889998     4599999999999998766          444432              11222 3458999999999


Q ss_pred             EEEcCC---------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc---
Q 005342          408 VCAKSL---------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ---  475 (701)
Q Consensus       408 ~s~s~d---------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~---  475 (701)
                      +.++.+         +.+.+||+.    ++++..+    ..+...+...+|||||+.|+.+ .++.|++|+..++..   
T Consensus        77 ~~~~~~~~~~r~~~~~~~~~~d~~----~~~~~~l----~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           77 LLEYNYVKQWRHSYTASYDIYDLN----KRQLITE----ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETT----TTEECCS----SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC
T ss_pred             EEEECCeeeEEEccceEEEEEECC----CCcEEEc----ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEE
Confidence            999876         556799998    6655442    2356789999999999999887 468999998765443   


Q ss_pred             -cccccccc----------------eeeEEeeCCCCeEEeecccCC---------------CCCCeEEEEec--CCEEEE
Q 005342          476 -SLEEENVN----------------MESQLYQPSSKLVMTNDIAAD---------------PKDSISCFALR--GSHLFS  521 (701)
Q Consensus       476 -~~g~~~~~----------------~~i~~~d~~~~~~~~~~~~~~---------------~~~~v~~l~~s--~~~l~s  521 (701)
                       ..|.....                .....|.++...+........               +...+..+.+.  |..   
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~---  224 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV---  224 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC---
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc---
Confidence             11111000                001233333332221100000               00001111111  000   


Q ss_pred             Ee-CCeEEEEeCCC---Cc--EEEEec------CCCCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCCc----eE-
Q 005342          522 AS-GGKISIFSLET---FQ--TLATFA------NPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKK----TK-  579 (701)
Q Consensus       522 ~s-dg~I~iwd~~~---~~--~~~~~~------~~~~~i~~l~~spdg-~l~~gs~d----g~I~iwd~~~~~----~~-  579 (701)
                       . ...|++||+.+   ++  ....+.      ++...+..++|+||| .++.....    ..|++||+.+++    +. 
T Consensus       225 -~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~  303 (740)
T 4a5s_A          225 -NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV  303 (740)
T ss_dssp             -CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred             -CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE
Confidence             0 12689999988   73  223333      266678999999999 66554332    379999999887    22 


Q ss_pred             -Eee--cCCCCCeE-----EEEEecCCCEEE-EEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC
Q 005342          580 -AKL--KGHQNRIT-----CLAYSLSLNVLV-SSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP  647 (701)
Q Consensus       580 -~~l--~~h~~~V~-----~v~~spdg~~l~-s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp  647 (701)
                       ..+  .+|.+.|.     .++|+|||+.++ ..+.+   ..|++||+.+++..   .   +..+.    ..|..+.+ +
T Consensus       304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~---~---lT~g~----~~v~~~~~-~  372 (740)
T 4a5s_A          304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT---F---ITKGT----WEVIGIEA-L  372 (740)
T ss_dssp             GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE---E---SCCSS----SCEEEEEE-E
T ss_pred             EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE---e---cccCC----EEEEEEEE-E
Confidence             222  45666555     789999999877 66643   47999999886422   1   33343    55666543 5


Q ss_pred             CCCEEEE-Eec-----C--eEEEEECCCCceeeeee-------e-eeEEEEEeeEE
Q 005342          648 DQIHLLS-IHE-----G--QIDVYEAPTLNHTSQVL-------L-ISHIMFVQIVV  687 (701)
Q Consensus       648 dg~~l~s-g~D-----g--~I~iwd~~~g~~~~~l~-------~-i~~~~fs~~~~  687 (701)
                      |++.|+. +..     +  .|+..++..++....+.       + ...+.|||+..
T Consensus       373 d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~  428 (740)
T 4a5s_A          373 TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAK  428 (740)
T ss_dssp             CSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSS
T ss_pred             eCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCC
Confidence            5777665 432     2  45555655444332332       2 77788887643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.72  E-value=3e-16  Score=164.18  Aligned_cols=221  Identities=12%  Similarity=0.080  Sum_probs=156.4

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC-ceEEEEEcCCCCeE-EEEcCCCcEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN-QSRESTSLPDADSA-VCAKSLEKSVN  418 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~-~V~~l~~spdg~~l-~s~s~d~~v~i  418 (701)
                      +.+++|.+||+.+++....+          ..+                  +. .+..++|+|+|+++ +++..++.|.+
T Consensus        18 ~~~~~v~~~d~~~~~~~~~~----------~~~------------------~~~~~~~~~~s~dg~~~~v~~~~~~~i~~   69 (349)
T 1jmx_B           18 NYPNNLHVVDVASDTVYKSC----------VMP------------------DKFGPGTAMMAPDNRTAYVLNNHYGDIYG   69 (349)
T ss_dssp             ETTTEEEEEETTTTEEEEEE----------ECS------------------SCCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCeEEEEECCCCcEEEEE----------ecC------------------CCCCCceeEECCCCCEEEEEeCCCCcEEE
Confidence            56899999999998876652          111                  11 25578999999865 45667899999


Q ss_pred             EeccccCCCCceeE-eecCCCCC----CCCEEEEEEecCCCEEEEEECC------------CcEEEEecCCCCccccccc
Q 005342          419 LKLQLINEPSECRT-LLLPDNSF----GGRVVRLIYSHSGDFLVALTQT------------ATHKLWKWQSNKQSLEEEN  481 (701)
Q Consensus       419 w~~~~~~~~~~~~~-l~~~~~~~----~~~v~~l~~spdg~~l~s~s~d------------g~i~vwd~~~~~~~~g~~~  481 (701)
                      ||+.    +++... +..  ...    ...+.+++|+|||+++++++.+            +.|.+||+.++..      
T Consensus        70 ~d~~----t~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------  137 (349)
T 1jmx_B           70 IDLD----TCKNTFHANL--SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE------  137 (349)
T ss_dssp             EETT----TTEEEEEEES--CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG------
T ss_pred             EeCC----CCcEEEEEEc--ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc------
Confidence            9997    554332 222  110    2236789999999999998865            8899997643210      


Q ss_pred             cceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCC--------------
Q 005342          482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPP--------------  545 (701)
Q Consensus       482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~--------------  545 (701)
                                  ...+.. +  .+...+.+++|+  |+ +++++ +.|.+||..+++.+..+..+.              
T Consensus       138 ------------~~~~~~-~--~~~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (349)
T 1jmx_B          138 ------------AKPVRT-F--PMPRQVYLMRAADDGS-LYVAG-PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF  200 (349)
T ss_dssp             ------------BCCSEE-E--ECCSSCCCEEECTTSC-EEEES-SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred             ------------cceeee-c--cCCCcccceeECCCCc-EEEcc-CcEEEEeCCCCceeccccccccCCccccCccceee
Confidence                        010100 1  123357788898  66 55544 349999999888777664321              


Q ss_pred             ------------------------------------------------------CCeEEEEEcC-CC-eEEEEeCCCcEE
Q 005342          546 ------------------------------------------------------PIATYFILLP-QD-LFAFGFDDSSIL  569 (701)
Q Consensus       546 ------------------------------------------------------~~i~~l~~sp-dg-~l~~gs~dg~I~  569 (701)
                                                                            ..+..++++| +| +++++  ++.|+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~  278 (349)
T 1jmx_B          201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLA  278 (349)
T ss_dssp             CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEE
T ss_pred             ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEE
Confidence                                                                  1345677889 99 77777  88999


Q ss_pred             EEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       570 iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      +||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|++||+.+++.+
T Consensus       279 ~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          279 KYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             EEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             EEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence            9999999988877643 45789999999998888888999999999998644

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=7.1e-16  Score=164.25  Aligned_cols=305  Identities=11%  Similarity=0.027  Sum_probs=182.3

Q ss_pred             ccccCccceeEEEeecCcceeeeE-----EEEccC-------C-CCC--eEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342          311 FPSMDKSRLLSLIKQIMDWWVPYC-----INVMPN-------A-NNE--TISLKDFPTVSNLRYASSILTDKPNQEGRPL  375 (701)
Q Consensus       311 iwd~~~~~~~~~l~~h~~~v~~~~-----l~fspd-------s-~d~--~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (701)
                      .+|..++..+..+..|.....  .     .+||||       + .++  .|.+||+.+++....          ..    
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~--~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l----------t~----   77 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCH--RNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL----------TE----   77 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEE--CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC----------CC----
T ss_pred             EecCCCCcceEEecCCccccc--chhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe----------ee----
Confidence            456778888888888876555  4     789999       2 255  488889888876655          22    


Q ss_pred             ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEE--EEecC
Q 005342          376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL--IYSHS  452 (701)
Q Consensus       376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l--~~spd  452 (701)
                                     +|.. +..++|+|||+.|+.++.++.+++||+.    +++...+..   .+...+...  .++||
T Consensus        78 ---------------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~----~g~~~~~~~---~~~~~~~~~~~~~~~d  135 (388)
T 3pe7_A           78 ---------------GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLA----TLEENVVYQ---VPAEWVGYGTWVANSD  135 (388)
T ss_dssp             ---------------SSCBCSSSCEECTTSSEEEEEETTTEEEEEETT----TCCEEEEEE---CCTTEEEEEEEEECTT
T ss_pred             ---------------CCCCCccceEEcCCCCEEEEEeCCCeEEEEECC----CCcceeeee---chhhcccccceeECCC
Confidence                           2222 3356799999999999999999999998    565544331   133334333  34899


Q ss_pred             CCEEEEEECCCcEEEEecCCCCc---cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CC
Q 005342          453 GDFLVALTQTATHKLWKWQSNKQ---SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GG  525 (701)
Q Consensus       453 g~~l~s~s~dg~i~vwd~~~~~~---~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg  525 (701)
                      |+.++....++.-  |.......   ..........+.+||..+++...  + ..+...+..++|+   |+.|+.+. ++
T Consensus       136 g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~--l-~~~~~~~~~~~~sp~dg~~l~~~~~~~  210 (388)
T 3pe7_A          136 CTKLVGIEIRRED--WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV--I-LQENQWLGHPIYRPYDDSTVAFCHEGP  210 (388)
T ss_dssp             SSEEEEEEEEGGG--CCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE--E-EEESSCEEEEEEETTEEEEEEEEECSC
T ss_pred             CCeeccccccCcc--cccccccchhhhhhccCCcceEEEEECCCCceEE--e-ecCCccccccEECCCCCCEEEEEEecC
Confidence            9987753211000  00000000   00000011234455777776443  2 1345568888887   66777665 32


Q ss_pred             ------eEEEEeCCCCcEEEEecCCC--CCeEEEEEcCCC-eEEEEeC-CC----cEEEEeCCCCceE--EeecCCCCC-
Q 005342          526 ------KISIFSLETFQTLATFANPP--PIATYFILLPQD-LFAFGFD-DS----SILVHCPCTKKTK--AKLKGHQNR-  588 (701)
Q Consensus       526 ------~I~iwd~~~~~~~~~~~~~~--~~i~~l~~spdg-~l~~gs~-dg----~I~iwd~~~~~~~--~~l~~h~~~-  588 (701)
                            .|.++|..++.. ..+..+.  ..+..++|+||| .|+..+. ++    .|++||+.+++..  ..+.++... 
T Consensus       211 ~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~  289 (388)
T 3pe7_A          211 HDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLM  289 (388)
T ss_dssp             TTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEE
T ss_pred             CCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeee
Confidence                  788888865543 4444343  257789999999 6654333 22    3999999988743  333331110 


Q ss_pred             --eEEEEEecCCCEEEEE---------eCCCeEEEEECCCCeeeeeeeeeeccCCCC-------CCCCCeEEEEEcCCCC
Q 005342          589 --ITCLAYSLSLNVLVSS---------GADAQLCVWDAVGWKKLCSKFLHSFQTGLV-------PETTIVNHIQFHPDQI  650 (701)
Q Consensus       589 --V~~v~~spdg~~l~s~---------s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~-------~~~~~v~~v~~spdg~  650 (701)
                        ....+|+|||+.|+..         ..+..|++||+.+++..   .+.   .+..       .....+.+++|+|||+
T Consensus       290 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~---~~~~~~~~~~~~~~~~~~~~~~spDg~  363 (388)
T 3pe7_A          290 SNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH---RVA---RHDTSWKVFEGDRQVTHPHPSFTPDDK  363 (388)
T ss_dssp             ECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE---EEE---ECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred             ecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE---Eec---cccCcccccccccccCCCCccCCCCCC
Confidence              1223799999987753         45679999999997532   222   1110       0001478899999999


Q ss_pred             EEEE-E-ecCeEEEEEC
Q 005342          651 HLLS-I-HEGQIDVYEA  665 (701)
Q Consensus       651 ~l~s-g-~Dg~I~iwd~  665 (701)
                      .|+. + .++...||.+
T Consensus       364 ~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          364 QILFTSDVHGKPALYLA  380 (388)
T ss_dssp             EEEEEECTTSSCEEEEE
T ss_pred             EEEEEecCCCceeEEEE
Confidence            8887 4 4666555544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=1.7e-14  Score=146.76  Aligned_cols=243  Identities=11%  Similarity=0.064  Sum_probs=171.3

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecC--CCCCCCCEEEEEEe-cCCCEEEEEEC-CCcE
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP--DNSFGGRVVRLIYS-HSGDFLVALTQ-TATH  465 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~--~~~~~~~v~~l~~s-pdg~~l~s~s~-dg~i  465 (701)
                      ++-. +.+++++|+|+++++...++.|.+|+..    ......+...  ...+...+.+++++ ++|+.+++... ++.|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~----g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE----GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI  102 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT----SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC----CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence            4445 8899999999999998889999999975    3332332211  11234578999995 67765555533 7888


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                      .+||.                      ++..+.. +...+...+.+++++  |+.+++.. ++.|.+||. +++.+..+.
T Consensus       103 ~~~d~----------------------~g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~  158 (286)
T 1q7f_A          103 QIYNQ----------------------YGQFVRK-FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFG  158 (286)
T ss_dssp             EEECT----------------------TSCEEEE-ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEE
T ss_pred             EEECC----------------------CCcEEEE-ecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeC
Confidence            88852                      2332221 222344568899998  66666655 789999996 566666664


Q ss_pred             --CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC--CCCeEEEEEecCCCEEEEEeCCC-eEEEEECC
Q 005342          543 --NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGADA-QLCVWDAV  616 (701)
Q Consensus       543 --~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h--~~~V~~v~~spdg~~l~s~s~D~-~I~vwd~~  616 (701)
                        .+...+..++++|+| ++++.+.++.|++||. +++.+..+..+  ...+..++++|+|+++++...++ .|++||..
T Consensus       159 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence              344568999999999 8888888999999997 55666666543  35789999999999888888886 99999965


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH  670 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~  670 (701)
                       ++..  ..+.   .+..  ...+.+++++|+|++++++.|++|++|++....+
T Consensus       238 -g~~~--~~~~---~~~~--~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          238 -GQLI--SALE---SKVK--HAQCFDVALMDDGSVVLASKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             -SCEE--EEEE---ESSC--CSCEEEEEEETTTEEEEEETTTEEEEEECSCCCC
T ss_pred             -CCEE--EEEc---ccCC--CCcceeEEECCCCcEEEECCCCeEEEEEcccccc
Confidence             4322  2222   1111  0457899999999887777789999999866543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=3.1e-16  Score=167.01  Aligned_cols=253  Identities=11%  Similarity=-0.010  Sum_probs=162.4

Q ss_pred             EEEcCCCCeEEEEcC-CCc--EEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          398 STSLPDADSAVCAKS-LEK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       398 l~~spdg~~l~s~s~-d~~--v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      ++|+|||++|+.++. ++.  |.+||+.    +++...+.   .++...+....|+|||+.|+.++.++.+.+||+.+  
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~----~g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~--  111 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLN----TQVATQLT---EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT--  111 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETT----TCEEEECC---CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT--
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCC----CCceEEee---eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC--
Confidence            789999999999887 664  7778886    66655533   23444444678999999999999999999997633  


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEe--c--CCEEEEE----------------------e-CCeE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSA----------------------S-GGKI  527 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~--s--~~~l~s~----------------------s-dg~I  527 (701)
                                         ++...  +...+...+....+  +  +..++..                      . +..|
T Consensus       112 -------------------g~~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (388)
T 3pe7_A          112 -------------------LEENV--VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL  170 (388)
T ss_dssp             -------------------CCEEE--EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred             -------------------Cccee--eeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence                               33211  00123333333333  4  5555531                      2 4789


Q ss_pred             EEEeCCCCcEEEEecCCCCCeEEEEEcC-CC-eEEEEeCC------CcEEEEeCCCCceEEeecCCC--CCeEEEEEecC
Q 005342          528 SIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGHQ--NRITCLAYSLS  597 (701)
Q Consensus       528 ~iwd~~~~~~~~~~~~~~~~i~~l~~sp-dg-~l~~gs~d------g~I~iwd~~~~~~~~~l~~h~--~~V~~v~~spd  597 (701)
                      ++||+.+++..... .+...+..++|+| || .|+..+.+      ..|+++|..++.... +..+.  ..+..++|+||
T Consensus       171 ~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spd  248 (388)
T 3pe7_A          171 MRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPD  248 (388)
T ss_dssp             EEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTT
T ss_pred             EEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCC
Confidence            99999988755443 3566789999999 99 77776653      378899987665443 44343  25788899999


Q ss_pred             CCEEEEEeC--C---CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE----------ecCeEEE
Q 005342          598 LNVLVSSGA--D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----------HEGQIDV  662 (701)
Q Consensus       598 g~~l~s~s~--D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg----------~Dg~I~i  662 (701)
                      |+.|+..+.  +   ..|++||+.+|+........    ++.........+.|+|||+.|+..          .+..|++
T Consensus       249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~  324 (388)
T 3pe7_A          249 GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP----ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV  324 (388)
T ss_dssp             SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC----CEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred             CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC----CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence            997765443  2   24999999998643222221    110000001123799999988852          2457999


Q ss_pred             EECCCCceeeeeee--------------eeEEEEEeeE
Q 005342          663 YEAPTLNHTSQVLL--------------ISHIMFVQIV  686 (701)
Q Consensus       663 wd~~~g~~~~~l~~--------------i~~~~fs~~~  686 (701)
                      ||+.+++.......              +.+++|||+.
T Consensus       325 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg  362 (388)
T 3pe7_A          325 FNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDD  362 (388)
T ss_dssp             EETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred             EeccCCceEEeccccCcccccccccccCCCCccCCCCC
Confidence            99988875332221              3567888874

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=1.9e-15  Score=160.03  Aligned_cols=241  Identities=11%  Similarity=0.033  Sum_probs=160.3

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEe-ecCCCCCCCCEEEEEEecCCCE--EEEEE-----------
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGDF--LVALT-----------  460 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l-~~~~~~~~~~v~~l~~spdg~~--l~s~s-----------  460 (701)
                      +..++|+|||++|++++.+ .|.+|++..   .++...+ ..+..   +.+.+++|+|||++  +++++           
T Consensus        42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~---~g~~~~~~~~~~~---g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           42 ISWMTFDHERKNIYGAAMK-KWSSFAVKS---PTEIVHEASHPIG---GHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             CSEEEECTTSSEEEEEEBT-EEEEEEEEE---TTEEEEEEEEECC---SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CcEEEECCCCCEEEEEccc-eEEEEEECC---CCCEEEeeEeecC---CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            5679999999999999887 999999852   2333222 11111   23456889999995  44442           


Q ss_pred             --CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee--cccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeC
Q 005342          461 --QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN--DIAADPKDSISCFALR--GSHLFSAS--GGKISIFSL  532 (701)
Q Consensus       461 --~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~  532 (701)
                        .+|.+.+|++..                    ++.+...  .+...+...+.+++|+  |+++++++  ++.|++||+
T Consensus       115 ~~~~g~v~v~~~~~--------------------~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~  174 (365)
T 1jof_A          115 YKFAGYGNVFSVSE--------------------TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK  174 (365)
T ss_dssp             SSSCCEEEEEEECT--------------------TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCceEEEEccCC--------------------CCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence              688899997632                    1222110  0111245678899999  77887765  589999999


Q ss_pred             C-CCcEE--EEec--CCCCCeEEEEEcCCC-eEEEEeC-CCcEEEEeCC--CCceE------Eeec----CCCC------
Q 005342          533 E-TFQTL--ATFA--NPPPIATYFILLPQD-LFAFGFD-DSSILVHCPC--TKKTK------AKLK----GHQN------  587 (701)
Q Consensus       533 ~-~~~~~--~~~~--~~~~~i~~l~~spdg-~l~~gs~-dg~I~iwd~~--~~~~~------~~l~----~h~~------  587 (701)
                      . +++..  ..+.  .+...+..++|+||| ++++++. ++.|.+|++.  +++..      ..+.    +|..      
T Consensus       175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~  254 (365)
T 1jof_A          175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL  254 (365)
T ss_dssp             CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred             CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence            8 67643  3343  235678999999999 7777664 6899998765  55542      2222    2232      


Q ss_pred             CeEEEE-EecCCCEEEEEeCC-C-----eEEEEECC-CCeeeeeeeeeeccCCCCCCCCCeEEEEEcC---CCCEEEEE-
Q 005342          588 RITCLA-YSLSLNVLVSSGAD-A-----QLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSI-  655 (701)
Q Consensus       588 ~V~~v~-~spdg~~l~s~s~D-~-----~I~vwd~~-~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp---dg~~l~sg-  655 (701)
                      .+..++ |+|||++|++++.+ +     +|.+|++. +|+.......  +. .+.   ..+..++|+|   ||++|+++ 
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~--~~-~~~---~~~~~~a~sp~~~dg~~l~v~~  328 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL--SP-TPT---SGGHSNAVSPCPWSDEWMAITD  328 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE--EE-CSS---CCTTCCCEEECTTCTTEEEEEC
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee--ee-cCC---CCcccceecCCCcCCCEEEEEE
Confidence            488999 99999988766542 2     89999996 5643211110  11 121   3456789999   89999986 


Q ss_pred             -ecCeEEEEECCCC
Q 005342          656 -HEGQIDVYEAPTL  668 (701)
Q Consensus       656 -~Dg~I~iwd~~~g  668 (701)
                       .+++|.+|++...
T Consensus       329 ~~~~~v~v~~~~~~  342 (365)
T 1jof_A          329 DQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSSCEEEEEEEETT
T ss_pred             cCCCeEEEEEEchh
Confidence             3589999999765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.68  E-value=8.9e-15  Score=154.45  Aligned_cols=273  Identities=8%  Similarity=0.029  Sum_probs=178.5

Q ss_pred             CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc----------C
Q 005342          343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK----------S  412 (701)
Q Consensus       343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s----------~  412 (701)
                      |++|.+||..+++....+          +.                   +..- .++|+|||+++++++          .
T Consensus        30 d~~v~v~D~~t~~~~~~i----------~~-------------------g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~   79 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMV----------PT-------------------AFNG-HVQVSNDGKKIYTMTTYHERITRGKR   79 (361)
T ss_dssp             GCEEEEEETTTCCEEEEE----------EC-------------------CEEE-EEEECTTSSEEEEEEEEETTSSSSCE
T ss_pred             cCeEEEEECCCCeEEEEe----------cC-------------------CCCC-ceEECCCCCEEEEEEecccccccCCC
Confidence            789999999988766552          11                   1113 689999999999886          3


Q ss_pred             CCcEEEEeccccCCCCce-eEeecCCC--CCCCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceeeE
Q 005342          413 LEKSVNLKLQLINEPSEC-RTLLLPDN--SFGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQ  487 (701)
Q Consensus       413 d~~v~iw~~~~~~~~~~~-~~l~~~~~--~~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~  487 (701)
                      ++.|.+||..    +.+. ..+.....  .+......++++|||++++++..  ++.|.+||.                 
T Consensus        80 ~~~v~v~d~~----t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~-----------------  138 (361)
T 2oiz_A           80 SDVVEVWDAD----KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDV-----------------  138 (361)
T ss_dssp             EEEEEEEETT----TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEET-----------------
T ss_pred             CCEEEEEECc----CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEEC-----------------
Confidence            5779999987    4333 23322111  02245677999999999998874  578999955                 


Q ss_pred             EeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCC-CcEEEE------ecCCCCCeEEEEEcCC
Q 005342          488 LYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLET-FQTLAT------FANPPPIATYFILLPQ  556 (701)
Q Consensus       488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~-~~~~~~------~~~~~~~i~~l~~spd  556 (701)
                          .+++.+...+.  .. ....+.+.   +..+++.+ ||.+.+|++.. ++....      +.....+ ..+.++|+
T Consensus       139 ----~~~~~~~~~i~--~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~  210 (361)
T 2oiz_A          139 ----AKGDYVEDVTA--AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALD  210 (361)
T ss_dssp             ----TTTEEEEEEGG--GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEEC
T ss_pred             ----CCCcEEEEEec--CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEeccc
Confidence                55554432011  11 11122233   34566666 89999998865 554422      2222222 23445677


Q ss_pred             C-eEEEEeCCCcEEEEeCCCCce--EEeecC------CC----CCeEEEEEecCCCEEEEEeC-----------CCeEEE
Q 005342          557 D-LFAFGFDDSSILVHCPCTKKT--KAKLKG------HQ----NRITCLAYSLSLNVLVSSGA-----------DAQLCV  612 (701)
Q Consensus       557 g-~l~~gs~dg~I~iwd~~~~~~--~~~l~~------h~----~~V~~v~~spdg~~l~s~s~-----------D~~I~v  612 (701)
                      + .++..+.++.++++|+.....  +..+.-      +.    .....++|+|+++.++.+..           .++|.+
T Consensus       211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v  290 (361)
T 2oiz_A          211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV  290 (361)
T ss_dssp             SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred             CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence            8 667777899999999875432  222210      11    11223789999887765532           358999


Q ss_pred             EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCC--ceeeeeee----eeEEEEEee
Q 005342          613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL--NHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       613 wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g--~~~~~l~~----i~~~~fs~~  685 (701)
                      ||+.+++.+.  .   +..+     . +.+++|+|||++|+++.+++|.+||..++  +.++++..    ...++++|+
T Consensus       291 iD~~t~~~v~--~---i~~~-----~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~  358 (361)
T 2oiz_A          291 MDTKTKQRVA--R---IPGR-----D-ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV  358 (361)
T ss_dssp             EETTTTEEEE--E---EECT-----T-CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred             EECCCCcEEE--E---EecC-----C-eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence            9999975432  2   3222     5 78999999999999875599999999999  99999743    778888875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.67  E-value=2e-14  Score=151.99  Aligned_cols=255  Identities=7%  Similarity=0.017  Sum_probs=159.9

Q ss_pred             EEEEcC--CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccce
Q 005342          407 AVCAKS--LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM  484 (701)
Q Consensus       407 l~s~s~--d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~  484 (701)
                      ++.|+.  ++.|.+|+++.  .+++...+..........+..++|+|||+++++++.+ .+.+|++.             
T Consensus         5 ~~vg~~~~~~~i~~~~~d~--~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~-------------   68 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVK-------------   68 (365)
T ss_dssp             EEEEESSSSCEEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEE-------------
T ss_pred             EEEEEccCCCcEEEEEEEC--CCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEEC-------------
Confidence            444443  25688877641  1444433321101123467889999999999988887 89999762             


Q ss_pred             eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE--EEEE--------------eCCeEEEEeCC-CCcEEEEec---
Q 005342          485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH--LFSA--------------SGGKISIFSLE-TFQTLATFA---  542 (701)
Q Consensus       485 ~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~--l~s~--------------sdg~I~iwd~~-~~~~~~~~~---  542 (701)
                            . ++++....-...+ +.+.+++++  |++  ++++              .+|.+.+|++. +++....+.   
T Consensus        69 ------~-~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~  140 (365)
T 1jof_A           69 ------S-PTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE  140 (365)
T ss_dssp             ------E-TTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE
T ss_pred             ------C-CCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE
Confidence                  1 3332211000011 224456777  663  4443              46899999997 465544333   


Q ss_pred             -CCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCC-CCceE--Eeec--CCCCCeEEEEEecCCCEEEEEeC-CCeEEEE
Q 005342          543 -NPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC-TKKTK--AKLK--GHQNRITCLAYSLSLNVLVSSGA-DAQLCVW  613 (701)
Q Consensus       543 -~~~~~i~~l~~spdg-~l~~gs-~dg~I~iwd~~-~~~~~--~~l~--~h~~~V~~v~~spdg~~l~s~s~-D~~I~vw  613 (701)
                       .+...+.+++|+||| +++++. .++.|++||+. +++..  ..+.  .|...+..++|+|||+++++++. +++|.+|
T Consensus       141 ~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~  220 (365)
T 1jof_A          141 YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEY  220 (365)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEE
Confidence             245678999999999 777665 46799999998 67653  3333  23567899999999999887775 7899999


Q ss_pred             ECC--CCeeee-eeeeeeccCCCCCCCC------CeEEEE-EcCCCCEEEEE--ecC-----eEEEEECC-CCceeee--
Q 005342          614 DAV--GWKKLC-SKFLHSFQTGLVPETT------IVNHIQ-FHPDQIHLLSI--HEG-----QIDVYEAP-TLNHTSQ--  673 (701)
Q Consensus       614 d~~--~g~~~~-~~~l~~~~~~~~~~~~------~v~~v~-~spdg~~l~sg--~Dg-----~I~iwd~~-~g~~~~~--  673 (701)
                      ++.  +|+... ...+..++.+...+..      .+..++ |+|||++|+++  .++     +|.+|++. +|+....  
T Consensus       221 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~  300 (365)
T 1jof_A          221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             EEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeee
Confidence            875  554321 1223323322110002      588999 99999998874  333     89999996 6775432  


Q ss_pred             -ee--e--eeEEEEEee
Q 005342          674 -VL--L--ISHIMFVQI  685 (701)
Q Consensus       674 -l~--~--i~~~~fs~~  685 (701)
                       ..  +  +.+++|+|.
T Consensus       301 ~~~~~~~~~~~~a~sp~  317 (365)
T 1jof_A          301 LSPTPTSGGHSNAVSPC  317 (365)
T ss_dssp             EEECSSCCTTCCCEEEC
T ss_pred             eeecCCCCcccceecCC
Confidence             22  1  677888883

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=1.1e-14  Score=155.27  Aligned_cols=302  Identities=13%  Similarity=0.064  Sum_probs=185.4

Q ss_pred             ccccCccceeEEEeecCcc-----eeeeEEEEccC----------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342          311 FPSMDKSRLLSLIKQIMDW-----WVPYCINVMPN----------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL  375 (701)
Q Consensus       311 iwd~~~~~~~~~l~~h~~~-----v~~~~l~fspd----------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (701)
                      ..|..++..+..+..+...     +.  .++||||          ..+..|.+||+.+++....          ..+   
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~--~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l----------~~~---   78 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFY--QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL----------TEG---   78 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTT--SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC----------CCS---
T ss_pred             eecCCCCcceEEEecCCCCccceeee--cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe----------ecC---
Confidence            4477788888777765443     56  7889998          2334788889888765443          111   


Q ss_pred             ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC
Q 005342          376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD  454 (701)
Q Consensus       376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~  454 (701)
                                      +.. ...+.|+|||+.|+.++.++.+.+|++.    +++...+..   .+..      |+|+|+
T Consensus        79 ----------------~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~----~~~~~~~~~---~~~~------~~~~g~  129 (396)
T 3c5m_A           79 ----------------KGDNTFGGFISTDERAFFYVKNELNLMKVDLE----TLEEQVIYT---VDEE------WKGYGT  129 (396)
T ss_dssp             ----------------SCBCTTTCEECTTSSEEEEEETTTEEEEEETT----TCCEEEEEE---CCTT------EEEEEE
T ss_pred             ----------------CCCccccceECCCCCEEEEEEcCCcEEEEECC----CCCcEEEEe---cccc------cCCCCC
Confidence                            111 2236799999999999999999999997    555444331   1122      666666


Q ss_pred             EEEEEECCCcEEEEecCCCCcccccc---------ccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEE
Q 005342          455 FLVALTQTATHKLWKWQSNKQSLEEE---------NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSA  522 (701)
Q Consensus       455 ~l~s~s~dg~i~vwd~~~~~~~~g~~---------~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~  522 (701)
                      .|+..+.++...+|.....-.+.|..         .....+.+||..+++.... .  .+...+..+.|+   ++.++..
T Consensus       130 ~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~-~--~~~~~~~~~~~sp~dg~~l~~~  206 (396)
T 3c5m_A          130 WVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI-H--QDTAWLGHPIYRPFDDSTVGFC  206 (396)
T ss_dssp             EEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE-E--EESSCEEEEEEETTEEEEEEEE
T ss_pred             EEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee-c--cCCcccccceECCCCCCEEEEE
Confidence            66665555444444321111112211         1122456677777764432 1  345678888887   5556655


Q ss_pred             e-C------CeEEEEeCCCCcEEEEecCC--CCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEeecCCCC
Q 005342          523 S-G------GKISIFSLETFQTLATFANP--PPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAKLKGHQN  587 (701)
Q Consensus       523 s-d------g~I~iwd~~~~~~~~~~~~~--~~~i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~l~~h~~  587 (701)
                      + +      ..|.+||+.+++.. .+..+  ...+..++|+||| .|+.++.+     +.|++||+.+++...... ..+
T Consensus       207 ~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~  284 (396)
T 3c5m_A          207 HEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP  284 (396)
T ss_dssp             ECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS
T ss_pred             ecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC
Confidence            4 2      46899998765433 33323  2357889999999 76666544     349999998886544322 112


Q ss_pred             CeEEEEEec-CCCEEEEEe----------------CCCeEEEEECCCCeeeeeeeeeeccCCCCC-------CCCCeEEE
Q 005342          588 RITCLAYSL-SLNVLVSSG----------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVP-------ETTIVNHI  643 (701)
Q Consensus       588 ~V~~v~~sp-dg~~l~s~s----------------~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~-------~~~~v~~v  643 (701)
                       .. +.|+| ||+++++++                .++.|++||+.+++..   .+.   .+...       ....+..+
T Consensus       285 -~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~---~~~~~~~~~~~~~~~~~~~~  356 (396)
T 3c5m_A          285 -CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---KLC---KHSTSWDVLDGDRQITHPHP  356 (396)
T ss_dssp             -EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---EEE---ECCCCCCCBTTBSSTTCCCC
T ss_pred             -CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---Ecc---CCCCccccccccccCCCCCc
Confidence             33 89999 999888765                3478999999987532   222   11100       00125678


Q ss_pred             EEcCCCCEEEEE--ecCe--EEEEECCCCc
Q 005342          644 QFHPDQIHLLSI--HEGQ--IDVYEAPTLN  669 (701)
Q Consensus       644 ~~spdg~~l~sg--~Dg~--I~iwd~~~g~  669 (701)
                      +|+|||+.|+..  .++.  |..+++.+++
T Consensus       357 ~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          357 SFTPNDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             eEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence            899999988874  3444  5555655554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=2.5e-14  Score=163.96  Aligned_cols=292  Identities=9%  Similarity=-0.007  Sum_probs=180.0

Q ss_pred             EeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          323 IKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       323 l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      +.+|...+.  .++|+++         +.++...||....+...+.          +..+...+.        ....++.
T Consensus        19 ~~~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------l~~~~~~~~--------~~~~~~~   78 (662)
T 3azo_A           19 VASRSGRPA--CVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES----------ALPAPWNVR--------NRVFEYS   78 (662)
T ss_dssp             HHHTCSCCE--EEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE----------SSCTTCCBC--------CCGGGTC
T ss_pred             HhhcCCccc--eeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce----------eCCCCcccc--------ccccccC
Confidence            345677777  7778877         4478899999654433333          222211000        0000111


Q ss_pred             ceEEEEEc--CCCCe-EEEEcC-CCcEEEEeccccCCC-CceeEeec-CCCCCCCCEEEEEEecCCCEEEEEECC-----
Q 005342          394 QSRESTSL--PDADS-AVCAKS-LEKSVNLKLQLINEP-SECRTLLL-PDNSFGGRVVRLIYSHSGDFLVALTQT-----  462 (701)
Q Consensus       394 ~V~~l~~s--pdg~~-l~s~s~-d~~v~iw~~~~~~~~-~~~~~l~~-~~~~~~~~v~~l~~spdg~~l~s~s~d-----  462 (701)
                      . ....|+  |||+. |+.++. +..|.+|++..  .+ +....+.. +...+...+.+++|||||+.|++++.+     
T Consensus        79 ~-~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~  155 (662)
T 3azo_A           79 G-FPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDA--PGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG  155 (662)
T ss_dssp             C-CCEEEECCSSSSCEEEEEBTTTCCEEEECTTS--TTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred             C-ccceeeeecCCCeEEEEEECCCCeEEEEcCCC--CCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC
Confidence            1 134454  99998 776654 45555555420  01 33333221 001145678899999999999988876     


Q ss_pred             -----CcEEEEecCCCCccccccccceeeEEeeCCC------CeEEeecccCCCCCCeEEEEec--CCEEEEEe-CC---
Q 005342          463 -----ATHKLWKWQSNKQSLEEENVNMESQLYQPSS------KLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG---  525 (701)
Q Consensus       463 -----g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~------~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg---  525 (701)
                           ..|.+||+                     .+      +....  +...+...+..++||  |++|+.++ ++   
T Consensus       156 ~~~~~~~i~~~~~---------------------~~~~~~~~~~~~~--l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~  212 (662)
T 3azo_A          156 PSDVRRFLAAVPL---------------------DGSAAADRSAVRE--LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRM  212 (662)
T ss_dssp             TTCEEEEEEEEET---------------------TSTTTTCGGGSEE--SSCSCSSEECCCEECTTSSEEEEEEECTTCC
T ss_pred             CCCceeEEEEEEC---------------------CCCccccCCceeE--EEecCCCcccCceECCCCCEEEEEECCCCCC
Confidence                 45666654                     44      33322  210234567778899  88888776 53   


Q ss_pred             -----eEEEEeCC-CC---cEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCceEEeecCCCCC-----
Q 005342          526 -----KISIFSLE-TF---QTLATFANPPPIATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNR-----  588 (701)
Q Consensus       526 -----~I~iwd~~-~~---~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg--~I~iwd~~~~~~~~~l~~h~~~-----  588 (701)
                           .|++||+. ++   +......++...+..++|+||| +++++..++  .|++||..+++......++...     
T Consensus       213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w  292 (662)
T 3azo_A          213 PWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLW  292 (662)
T ss_dssp             TTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCC
T ss_pred             CCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccc
Confidence                 79999998 56   4444444456789999999999 888888888  7888887777765544443322     


Q ss_pred             ---eEEEEEecCCCEEEEEeCCCeEEEE--ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE--EEe-c--C
Q 005342          589 ---ITCLAYSLSLNVLVSSGADAQLCVW--DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL--SIH-E--G  658 (701)
Q Consensus       589 ---V~~v~~spdg~~l~s~s~D~~I~vw--d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~--sg~-D--g  658 (701)
                         +..++|+|+++++++++. +.+++|  |..+++.   ..   +. .+.   ..+..+ |++++..++  ++. +  .
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~---~~---l~-~~~---~~~~~~-~s~~~~~~~~~~~~~~~~~  360 (662)
T 3azo_A          293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL---VD---AA-GPW---TEWAAT-LTVSGTRAVGVAASPRTAY  360 (662)
T ss_dssp             STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE---EE---CC-SSC---CEEEEE-EEEETTEEEEEEEETTEEE
T ss_pred             cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE---EE---ec-CCC---CeEEEE-EecCCCEEEEEEcCCCCCC
Confidence               567899999999999998 999999  6666541   22   22 332   556665 255555443  333 3  2


Q ss_pred             eEEEEECCCCceee
Q 005342          659 QIDVYEAPTLNHTS  672 (701)
Q Consensus       659 ~I~iwd~~~g~~~~  672 (701)
                      .|.+||+.+++...
T Consensus       361 ~i~~~d~~~g~~~~  374 (662)
T 3azo_A          361 EVVELDTVTGRART  374 (662)
T ss_dssp             EEEEEETTTCCEEE
T ss_pred             EEEEEECCCCceEE
Confidence            57777877776543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.65  E-value=2.2e-14  Score=164.33  Aligned_cols=259  Identities=8%  Similarity=-0.029  Sum_probs=173.6

Q ss_pred             ccCCCc-eEEEEEcCCCCeEEEE--cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEE---------EEEEe--cCCC
Q 005342          389 FNDNNQ-SRESTSLPDADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVV---------RLIYS--HSGD  454 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~~l~s~--s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~---------~l~~s--pdg~  454 (701)
                      +.+|.. +..++|++++-+++++  +.++...||....   .+....+.    .+...+.         ...|+  |||+
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~SPDg~   91 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRA---DGAEESAL----PAPWNVRNRVFEYSGFPWAGVPRPAGG   91 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECT---TSCEEESS----CTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECC---CCCcceeC----CCCccccccccccCCccceeeeecCCC
Confidence            567888 9999999987777877  6688899999632   34434432    2333444         55565  9999


Q ss_pred             E-EEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCC--C-CeEEeecccCC----CCCCeEEEEec--CCEEEEEe
Q 005342          455 F-LVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPS--S-KLVMTNDIAAD----PKDSISCFALR--GSHLFSAS  523 (701)
Q Consensus       455 ~-l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~--~-~~~~~~~~~~~----~~~~v~~l~~s--~~~l~s~s  523 (701)
                      . |+.++. +..|.+++                     ..  + +....  +...    |...+.+++|+  |+.|++++
T Consensus        92 ~~la~~~~~~~~l~~~~---------------------~~~~g~~~~~~--l~~~~~~~~~~~~~~~~~spDg~~l~~~~  148 (662)
T 3azo_A           92 PLLVFTHFGDQRLYAFE---------------------PDAPGGAVPRP--LTPVSAVGGGLRWADPVLLPERGEVWCMA  148 (662)
T ss_dssp             CEEEEEBTTTCCEEEEC---------------------TTSTTCCCCEE--CSCCCCSTTCEEEEEEEEETTTTEEEEEE
T ss_pred             eEEEEEECCCCeEEEEc---------------------CCCCCCCCCEe--ccCCccCCCCccccCcEECCCCCEEEEEE
Confidence            8 776554 34454443                     33  2 33221  2111    55678899999  88888887


Q ss_pred             -C----------CeEEEEeCCC------CcEEEEec-CCCCCeEEEEEcCCC-eEEEEeCC--------CcEEEEeCC-C
Q 005342          524 -G----------GKISIFSLET------FQTLATFA-NPPPIATYFILLPQD-LFAFGFDD--------SSILVHCPC-T  575 (701)
Q Consensus       524 -d----------g~I~iwd~~~------~~~~~~~~-~~~~~i~~l~~spdg-~l~~gs~d--------g~I~iwd~~-~  575 (701)
                       +          ..|++||+.+      ++. ..+. .+...+..++||||| .|+.++.+        ..|++||+. +
T Consensus       149 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~  227 (662)
T 3azo_A          149 EEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED  227 (662)
T ss_dssp             EEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred             ecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence             6          5899999987      544 4454 555678889999999 88877754        379999998 5


Q ss_pred             C---ceEEeecCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCeeeeeeeeeeccCCCCCCC-----CCeEEEEE
Q 005342          576 K---KTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPET-----TIVNHIQF  645 (701)
Q Consensus       576 ~---~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~-----~~v~~v~~  645 (701)
                      +   +......+|...+..++|+|||+++++++.++  .|++||+.+++...      +..++....     ..+.+++|
T Consensus       228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~------l~~~~~~~~~p~w~~~~~~~~~  301 (662)
T 3azo_A          228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ------LCRREEEFAGPLWTPGMRWFAP  301 (662)
T ss_dssp             SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE------SSCCSSBSSCCCCSTTCCSEEE
T ss_pred             CcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee------cccccccccCccccccCceEeE
Confidence            6   44444455678899999999999888888888  67777776764221      222221000     11567899


Q ss_pred             cCCCCEEEEEecCeEEEE--ECCCCceeeeeee----eeEE-EEEee
Q 005342          646 HPDQIHLLSIHEGQIDVY--EAPTLNHTSQVLL----ISHI-MFVQI  685 (701)
Q Consensus       646 spdg~~l~sg~Dg~I~iw--d~~~g~~~~~l~~----i~~~-~fs~~  685 (701)
                      +|++++++++.++.++||  |..+++ ++.+..    +..+ ++++.
T Consensus       302 ~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~  347 (662)
T 3azo_A          302 LANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGT  347 (662)
T ss_dssp             CTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETT
T ss_pred             eCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCCC
Confidence            999999988733888888  655555 555554    5555 44433

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=8.7e-14  Score=144.89  Aligned_cols=240  Identities=10%  Similarity=0.049  Sum_probs=171.0

Q ss_pred             eEEEEEcCCCCeEEEEcCC------------------------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEe
Q 005342          395 SRESTSLPDADSAVCAKSL------------------------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS  450 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d------------------------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~s  450 (701)
                      +.+++++|+|+++++...+                        +.|.+||..    ++++....  ...+......++++
T Consensus        26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----~g~~~~~~--~~~~~~~p~gia~d   99 (329)
T 3fvz_A           26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN----NAEILQSS--GKNLFYLPHGLSID   99 (329)
T ss_dssp             EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT----TCCEEEEE--CTTTCSSEEEEEEC
T ss_pred             ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC----CCeEEecc--CCCccCCceEEEEC
Confidence            8899999999999998877                        479999986    56554311  12344678999999


Q ss_pred             cCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee--c----ccCCCCCCeEEEEec---CCEEEE
Q 005342          451 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN--D----IAADPKDSISCFALR---GSHLFS  521 (701)
Q Consensus       451 pdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~--~----~~~~~~~~v~~l~~s---~~~l~s  521 (701)
                      |+|+.+++.+.++.|.+|+......                   .+...  .    ....+...+..++++   |.++++
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~-------------------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~  160 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEG-------------------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS  160 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSC-------------------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeE-------------------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE
Confidence            9999777777789999997633210                   01100  0    001334467889998   566666


Q ss_pred             Ee--CCeEEEEeCCCCcEEEEecCCC----------CCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEEeec--CC
Q 005342          522 AS--GGKISIFSLETFQTLATFANPP----------PIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLK--GH  585 (701)
Q Consensus       522 ~s--dg~I~iwd~~~~~~~~~~~~~~----------~~i~~l~~spd-g-~l~~gs~dg~I~iwd~~~~~~~~~l~--~h  585 (701)
                      .+  ++.|++|| .++..+..+....          .....++++|+ + ++++...++.|++||..+++.+..+.  ++
T Consensus       161 d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~  239 (329)
T 3fvz_A          161 DGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF  239 (329)
T ss_dssp             ECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT
T ss_pred             eCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc
Confidence            63  68999999 5777777764222          23789999999 6 77888889999999998899888874  35


Q ss_pred             CCCeEEEEEecCCCEEEE-------EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec
Q 005342          586 QNRITCLAYSLSLNVLVS-------SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE  657 (701)
Q Consensus       586 ~~~V~~v~~spdg~~l~s-------~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D  657 (701)
                      ...+.+++|+| +..+++       .+.+.+|++||..+|+...  .+. ...++.   ..+.+++++|+|.++++. .+
T Consensus       240 ~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~--~~~-~~~~~~---~~p~~ia~~~dG~lyvad~~~  312 (329)
T 3fvz_A          240 GRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID--VFK-PVRKHF---DMPHDIVASEDGTVYIGDAHT  312 (329)
T ss_dssp             TTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEE--EEC-CSSSCC---SSEEEEEECTTSEEEEEESSS
T ss_pred             CCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE--EEc-CCCCcc---CCeeEEEECCCCCEEEEECCC
Confidence            56789999999 433333       3345699999999986432  221 112333   678999999999666665 68


Q ss_pred             CeEEEEECCC
Q 005342          658 GQIDVYEAPT  667 (701)
Q Consensus       658 g~I~iwd~~~  667 (701)
                      +.|++|++..
T Consensus       313 ~~I~~~~~~~  322 (329)
T 3fvz_A          313 NTVWKFTLTE  322 (329)
T ss_dssp             CCEEEEEEEE
T ss_pred             CEEEEEeCCc
Confidence            8999999853

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.64  E-value=3.3e-15  Score=159.24  Aligned_cols=247  Identities=7%  Similarity=-0.045  Sum_probs=152.0

Q ss_pred             eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342          395 SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ  471 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  471 (701)
                      +..++|+|||++|+.+...   ..+.+|++.    +++...+..   .+......+.|+|||++|+.++.++.+.+||+.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~----~~~~~~l~~---~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~  110 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLE----TQQAVQLTE---GKGDNTFGGFISTDERAFFYVKNELNLMKVDLE  110 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETT----TTEEEECCC---SSCBCTTTCEECTTSSEEEEEETTTEEEEEETT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECC----CCcEEEeec---CCCCccccceECCCCCEEEEEEcCCcEEEEECC
Confidence            5568899999998877543   467888886    565544321   122222237899999999999999999999775


Q ss_pred             CCCccc-cccccceeeEEeeCCCCeEEeecccCCCCCCeEE-----EEec--CCEEEEE-----e-CCeEEEEeCCCCcE
Q 005342          472 SNKQSL-EEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-----FALR--GSHLFSA-----S-GGKISIFSLETFQT  537 (701)
Q Consensus       472 ~~~~~~-g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~-----l~~s--~~~l~s~-----s-dg~I~iwd~~~~~~  537 (701)
                      ++.... ......     |.+. +..+.  +.  .......     ..++  ++.++.+     . +..|++||+.+++.
T Consensus       111 ~~~~~~~~~~~~~-----~~~~-g~~l~--~~--~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (396)
T 3c5m_A          111 TLEEQVIYTVDEE-----WKGY-GTWVA--NS--DCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL  180 (396)
T ss_dssp             TCCEEEEEECCTT-----EEEE-EEEEE--CT--TSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred             CCCcEEEEecccc-----cCCC-CCEEE--ec--cCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence            432100 000000     0000 00000  00  0000000     1233  4443332     3 56899999988876


Q ss_pred             EEEecCCCCCeEEEEEcC-CC-eEEEEeCC------CcEEEEeCCCCceEEeecCC-CCCeEEEEEecCCCEEEEEeCC-
Q 005342          538 LATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGAD-  607 (701)
Q Consensus       538 ~~~~~~~~~~i~~l~~sp-dg-~l~~gs~d------g~I~iwd~~~~~~~~~l~~h-~~~V~~v~~spdg~~l~s~s~D-  607 (701)
                      ..... +...+..+.|+| ++ .++..+.+      ..|++||+.+++........ ...+..++|+|||++|+.++.+ 
T Consensus       181 ~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (396)
T 3c5m_A          181 EVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK  259 (396)
T ss_dssp             EEEEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             Eeecc-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence            55543 566789999999 77 66666543      36999998766544333321 2357889999999988776554 


Q ss_pred             ----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC-CCCEEEEEe-----------------cCeEEEEEC
Q 005342          608 ----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSIH-----------------EGQIDVYEA  665 (701)
Q Consensus       608 ----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp-dg~~l~sg~-----------------Dg~I~iwd~  665 (701)
                          +.|++||+.+++...   +...        .... +.|+| ||++++++.                 ++.|++||+
T Consensus       260 ~~~~~~l~~~d~~~g~~~~---l~~~--------~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          260 GQTDRVIYKANPETLENEE---VMVM--------PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             TTCCEEEEEECTTTCCEEE---EEEC--------CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred             CCccceEEEEECCCCCeEE---eeeC--------CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence                459999999875322   2211        1123 89999 999888632                 367999999


Q ss_pred             CCCcee
Q 005342          666 PTLNHT  671 (701)
Q Consensus       666 ~~g~~~  671 (701)
                      .+++..
T Consensus       328 ~~~~~~  333 (396)
T 3c5m_A          328 KAKSAQ  333 (396)
T ss_dssp             TTTBCC
T ss_pred             ccCceE
Confidence            888753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.62  E-value=1.3e-13  Score=145.58  Aligned_cols=278  Identities=11%  Similarity=0.078  Sum_probs=180.8

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC------C-----------CCCeEEEEeccCCccccccccccCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------A-----------NNETISLKDFPTVSNLRYASSILTDKPN  369 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s-----------~d~~i~lWd~~~~~~~~~~~~~~~~~~~  369 (701)
                      +.|.+||..+++.+..+..+..    +.++|+||      +           .+++|.+||..+++....+         
T Consensus        31 ~~v~v~D~~t~~~~~~i~~g~~----p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i---------   97 (361)
T 2oiz_A           31 SRVHVYDYTNGKFLGMVPTAFN----GHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI---------   97 (361)
T ss_dssp             CEEEEEETTTCCEEEEEECCEE----EEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE---------
T ss_pred             CeEEEEECCCCeEEEEecCCCC----CceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEE---------
Confidence            6788999999999988876533    27899999      1           2678999999988776662         


Q ss_pred             CCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcC--CCcEEEEeccccCCCCceeEee-cCCCCCCCCEE
Q 005342          370 QEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKS--LEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVV  445 (701)
Q Consensus       370 ~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~--d~~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~  445 (701)
                       .....            .. .+.. ...++++|||++|+++..  +++|.+||+.    +++... . ++    .....
T Consensus        98 -~~~~~------------~~-~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~----~~~~~~-~~i~----~~~~~  154 (361)
T 2oiz_A           98 -SLPPK------------RV-QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA----KGDYVE-DVTA----AAGCW  154 (361)
T ss_dssp             -EECTT------------BC-CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT----TTEEEE-EEGG----GTTEE
T ss_pred             -EcCcc------------cc-ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC----CCcEEE-EEec----CCCcc
Confidence             11000            00 0112 456899999999998864  5899999998    554433 1 21    12234


Q ss_pred             EEEEecCC-CEEEEEECCCcEEEEecCCCCccccccccce-eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEE
Q 005342          446 RLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNM-ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS  521 (701)
Q Consensus       446 ~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s  521 (701)
                      .+.+.|++ ..+++.+.||.+.+|+.....    +..... ...+|++             ...++ .+..+  +..++.
T Consensus       155 ~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g----~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~g~~~~~  216 (361)
T 2oiz_A          155 SVIPQPNRPRSFMTICGDGGLLTINLGEDG----KVASQSRSKQMFSV-------------KDDPI-FIAPALDKDKAHF  216 (361)
T ss_dssp             EEEECTTSSSEEEEEETTSSEEEEEECTTS----SEEEEEECCCCSCT-------------TTSCB-CSCCEECSSEEEE
T ss_pred             eeEEcCCCCeeEEEECCCCcEEEEEECCCC----cEeeeccccceEcC-------------CCCce-EEEecccCCEEEE
Confidence            45677876 577888899999999763311    100000 0001111             11121 11112  555566


Q ss_pred             Ee-CCeEEEEeCCCCc--EEEEecCC----------CCCeEEEEEcCCC-eEEEEeC-----------CCcEEEEeCCCC
Q 005342          522 AS-GGKISIFSLETFQ--TLATFANP----------PPIATYFILLPQD-LFAFGFD-----------DSSILVHCPCTK  576 (701)
Q Consensus       522 ~s-dg~I~iwd~~~~~--~~~~~~~~----------~~~i~~l~~spdg-~l~~gs~-----------dg~I~iwd~~~~  576 (701)
                      .+ ++.+.++|+....  ....+...          ......++++|++ .++++..           ++.|.+||+.++
T Consensus       217 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~  296 (361)
T 2oiz_A          217 VSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK  296 (361)
T ss_dssp             EBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT
T ss_pred             EeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC
Confidence            66 8899999986543  22222110          1112237899998 5554432           348999999999


Q ss_pred             ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC--eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342          577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  650 (701)
Q Consensus       577 ~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g--~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~  650 (701)
                      +.+.++..+.  +.+++|+|||++|++++. ++|.+||..++  +.+  ..+.  ..|     .....++++|+|+
T Consensus       297 ~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~--~~i~--~~G-----~~P~~~~~~p~G~  360 (361)
T 2oiz_A          297 QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL--RTIE--GAA-----EASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE--EEET--TSC-----SSEEEEEECCCSC
T ss_pred             cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee--EEec--cCC-----CCcEEEEecCCCC
Confidence            9999999876  899999999999998887 99999999998  432  2221  112     5568899999986

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.61  E-value=6.1e-13  Score=138.40  Aligned_cols=275  Identities=8%  Similarity=-0.053  Sum_probs=185.5

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNL  419 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw  419 (701)
                      +.+++|.+||..+++....+         +....           .   ..... ...+++. +++..++...++.|.+|
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i---------~~~~n-----------~---~~lg~~~~~i~~~-~~~lyv~~~~~~~v~vi   69 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEV---------FYRAN-----------G---FKLGDVAQSMVIR-DGIGWIVVNNSHVIFAI   69 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSH---------HHHHH-----------S---SCCBSCEEEEEEE-TTEEEEEEGGGTEEEEE
T ss_pred             CCCceEEEEECCCCEEhhhh---------Hhhhc-----------C---cccCccceEEEEE-CCEEEEEEcCCCEEEEE
Confidence            34899999999998865542         10000           0   01112 4567774 45666667778999999


Q ss_pred             eccccCCCCceeE-eecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEE
Q 005342          420 KLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM  497 (701)
Q Consensus       420 ~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~  497 (701)
                      |..    +++... +.     .......++++++|+ +.++. .++.|.+||.                     .++++.
T Consensus        70 D~~----t~~~~~~i~-----~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~---------------------~t~~~~  118 (328)
T 3dsm_A           70 DIN----TFKEVGRIT-----GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINP---------------------KTYEIT  118 (328)
T ss_dssp             ETT----TCCEEEEEE-----CCSSEEEEEEEETTE-EEEEEBSCSEEEEEET---------------------TTTEEE
T ss_pred             ECc----ccEEEEEcC-----CCCCCcEEEEeCCCe-EEEEECCCCeEEEEEC---------------------CCCeEE
Confidence            998    555432 22     246788999999995 55555 7899999955                     555543


Q ss_pred             eecccCCC----CCCeEEEEec-CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC----
Q 005342          498 TNDIAADP----KDSISCFALR-GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----  565 (701)
Q Consensus       498 ~~~~~~~~----~~~v~~l~~s-~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d----  565 (701)
                      .. +..+.    ......+++. +..+++..  ++.|.++|..+++.+.++... .....++++|+| +++++..+    
T Consensus       119 ~~-i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~  196 (328)
T 3dsm_A          119 GY-IECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGS  196 (328)
T ss_dssp             EE-EECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred             EE-EEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCC
Confidence            22 11111    1144466668 44444432  689999999999988887643 345789999999 66665554    


Q ss_pred             ------CcEEEEeCCCCceEEeecCC-CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCC
Q 005342          566 ------SSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT  638 (701)
Q Consensus       566 ------g~I~iwd~~~~~~~~~l~~h-~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~  638 (701)
                            +.|+++|..+++....+... ......++|+|++++++.+..  .|.+||..+++......   +. ...   .
T Consensus       197 ~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~---~~-~~~---~  267 (328)
T 3dsm_A          197 PYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF---LE-FRD---T  267 (328)
T ss_dssp             SSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS---BC-CCS---S
T ss_pred             ccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee---ec-CCC---C
Confidence                  78999999999888776532 236899999999998887655  89999999875321111   11 111   5


Q ss_pred             CeEEEEEcCC-CCEEEEE-----ecCeEEEEECCCCceeeeeee---eeEEEE
Q 005342          639 IVNHIQFHPD-QIHLLSI-----HEGQIDVYEAPTLNHTSQVLL---ISHIMF  682 (701)
Q Consensus       639 ~v~~v~~spd-g~~l~sg-----~Dg~I~iwd~~~g~~~~~l~~---i~~~~f  682 (701)
                      ...+++++|+ +.+.++.     .++.|.+||.. |+.+++++.   -.+++|
T Consensus       268 ~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~  319 (328)
T 3dsm_A          268 KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW  319 (328)
T ss_dssp             CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred             ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence            6789999995 5544444     37889999997 999998876   566666

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.60  E-value=1.6e-12  Score=144.46  Aligned_cols=307  Identities=12%  Similarity=0.070  Sum_probs=209.7

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEecc--CCccccccccccCCCCCCCCCCccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFP--TVSNLRYASSILTDKPNQEGRPLDA  377 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~  377 (701)
                      +.|.++|..+++.+..+... ..+.  .+.||||       +.|+.|.+||+.  +++.+..+          .      
T Consensus       177 ~~V~viD~~t~~v~~~i~~g-~~p~--~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i----------~------  237 (567)
T 1qks_A          177 GQIALIDGSTYEIKTVLDTG-YAVH--ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI----------K------  237 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECS-SCEE--EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE----------E------
T ss_pred             CeEEEEECCCCeEEEEEeCC-CCcc--ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE----------e------
Confidence            78999999999999988753 3467  8999999       678999999995  66555442          1      


Q ss_pred             ccCCCCCCCccccCCCceEEEEEc----CCCCeEEEEcC-CCcEEEEeccccCCCCceeE-eecC---CCC---C-CCCE
Q 005342          378 SSGDDSNDSSCFNDNNQSRESTSL----PDADSAVCAKS-LEKSVNLKLQLINEPSECRT-LLLP---DNS---F-GGRV  444 (701)
Q Consensus       378 s~~D~~~~~~~l~~h~~V~~l~~s----pdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~-l~~~---~~~---~-~~~v  444 (701)
                                   .......++|+    |||+++++++. ++++.++|..    +.+... +...   ...   | ...+
T Consensus       238 -------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~----t~~~~~~i~~~~~~~~~~~~~p~~rv  300 (567)
T 1qks_A          238 -------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE----TLEPKKIQSTRGMTYDEQEYHPEPRV  300 (567)
T ss_dssp             -------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT----TCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             -------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC----CCcEEEEEeccccccccccccCCCce
Confidence                         11125679999    79998887764 4899999987    443332 2211   110   1 2378


Q ss_pred             EEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEE
Q 005342          445 VRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS  521 (701)
Q Consensus       445 ~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s  521 (701)
                      ..+..++++..++..- .+|.|.++|.....                   ...+. .+  .......++.|+  |+++++
T Consensus       301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~-------------------~~~v~-~i--~~~~~~~d~~~~pdgr~~~v  358 (567)
T 1qks_A          301 AAILASHYRPEFIVNVKETGKILLVDYTDLN-------------------NLKTT-EI--SAERFLHDGGLDGSHRYFIT  358 (567)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSS-------------------EEEEE-EE--ECCSSEEEEEECTTSCEEEE
T ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEecCCCc-------------------cceee-ee--eccccccCceECCCCCEEEE
Confidence            8899999877555444 46899888763210                   01111 12  123456688898  888777


Q ss_pred             Ee--CCeEEEEeCCCCcEEEEecC-----CCCCeEEEEEcCCC--eEEEEe-CCCcEEEEeCCC-------CceEEeecC
Q 005342          522 AS--GGKISIFSLETFQTLATFAN-----PPPIATYFILLPQD--LFAFGF-DDSSILVHCPCT-------KKTKAKLKG  584 (701)
Q Consensus       522 ~s--dg~I~iwd~~~~~~~~~~~~-----~~~~i~~l~~spdg--~l~~gs-~dg~I~iwd~~~-------~~~~~~l~~  584 (701)
                      +.  ++.|.++|+.+++.+..+..     |...-.. .++|++  ..+++. .+++|.++|..+       .+.++++.+
T Consensus       359 a~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~  437 (567)
T 1qks_A          359 AANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA  437 (567)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred             EeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec
Confidence            66  69999999999988777654     2211112 268886  444543 468999999987       567888876


Q ss_pred             CCCCeEEEEEecCCCEEEEEeC-------CCeEEEEECCCCe----eeeeeeee-----eccCCCCCCCCCeEEEEEcCC
Q 005342          585 HQNRITCLAYSLSLNVLVSSGA-------DAQLCVWDAVGWK----KLCSKFLH-----SFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l~s~s~-------D~~I~vwd~~~g~----~~~~~~l~-----~~~~~~~~~~~~v~~v~~spd  648 (701)
                      ....-..+..+|+++++.....       .++|.|+|+.+.+    ......+.     .+..+.    ..+..+.|+|+
T Consensus       438 ~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  513 (567)
T 1qks_A          438 LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQ----PRVVQGEFNKD  513 (567)
T ss_dssp             SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSC----CEEEEEEECTT
T ss_pred             CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCC----cceEeeeECCC
Confidence            5433345778999998887663       3599999998751    11112222     011111    57899999999


Q ss_pred             CCEEEEE-e-----cCeEEEEECCCCceeeeeee
Q 005342          649 QIHLLSI-H-----EGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       649 g~~l~sg-~-----Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      |+.+.++ .     ++.|.|+|..+++++++++.
T Consensus       514 G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          514 GTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             SSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             CCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence            9998875 3     68999999999999999885

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=2.7e-13  Score=141.80  Aligned_cols=231  Identities=12%  Similarity=0.090  Sum_probs=156.2

Q ss_pred             eEEEEEcCCCCeEEEEc---------CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC---
Q 005342          395 SRESTSLPDADSAVCAK---------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---  462 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s---------~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---  462 (701)
                      +..+++  ||+.++...         .++.|.+|++.    +++...+        ..+..+.|||||++|+.++.+   
T Consensus        17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~----~~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~   82 (347)
T 2gop_A           17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLK----NNARRFI--------ENATMPRISPDGKKIAFMRANEEK   82 (347)
T ss_dssp             EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETT----TCCEEEE--------ESCEEEEECTTSSEEEEEEEETTT
T ss_pred             cccceE--CCcEEEEEEeecCcccCCccceEEEEeCC----CCceEEc--------ccCCCeEECCCCCEEEEEEeccCC
Confidence            778888  999888652         25678899987    5554443        457889999999999988764   


Q ss_pred             CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C---------------
Q 005342          463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G---------------  524 (701)
Q Consensus       463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d---------------  524 (701)
                      +...+|                   +|+..+++....  .. +.. +.+++|+  |+.|+.++ +               
T Consensus        83 ~~~~l~-------------------~~~~~~g~~~~l--~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~  139 (347)
T 2gop_A           83 KVSEIW-------------------VADLETLSSKKI--LE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA  139 (347)
T ss_dssp             TEEEEE-------------------EEETTTTEEEEE--EE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred             CcceEE-------------------EEECCCCceEEE--Ec-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence            454444                   235566654321  11 223 8899998  77787775 3               


Q ss_pred             ------------CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCC---------CcEEEEeCCCCceEEeec
Q 005342          525 ------------GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD---------SSILVHCPCTKKTKAKLK  583 (701)
Q Consensus       525 ------------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~d---------g~I~iwd~~~~~~~~~l~  583 (701)
                                  ..|++||+.+++.+..+.. . .+..++|+|||+++++..+         ..|+++|  +++. ..+.
T Consensus       140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~  214 (347)
T 2gop_A          140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMF  214 (347)
T ss_dssp             C---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEE
T ss_pred             eecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCce-EEec
Confidence                        5799999988877455554 3 7889999999933333333         2455666  5544 3344


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEE-EEEcCCCCEEEE
Q 005342          584 GHQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLS  654 (701)
Q Consensus       584 ~h~~~V~~v~~spdg~~l~s~s~D--------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~-v~~spdg~~l~s  654 (701)
                      .+ ..+..+  +|||++|+.++.+        ..|++||  +++.   .  . +..++.   ..+.. +.|+ || ++++
T Consensus       215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~---~--~-l~~~~~---~~~~~~~~~s-dg-~~~~  278 (347)
T 2gop_A          215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV---M--G-ILDEVD---RGVGQAKIKD-GK-VYFT  278 (347)
T ss_dssp             EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE---E--E-SSTTCC---SEEEEEEEET-TE-EEEE
T ss_pred             cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce---E--e-ccccCC---cccCCccEEc-Cc-EEEE
Confidence            44 555544  9999988877754        4788888  5431   1  1 333443   66776 9999 88 7666


Q ss_pred             E-ecCeEEEEECCCCceeeeeee---eeEEEEEe
Q 005342          655 I-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQ  684 (701)
Q Consensus       655 g-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~  684 (701)
                      + .++.++|| +.+|+....+.+   |.+++|+|
T Consensus       279 ~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          279 LFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred             EecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence            5 78999999 877776555544   88888888

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=6.3e-13  Score=135.93  Aligned_cols=237  Identities=11%  Similarity=0.021  Sum_probs=164.4

Q ss_pred             ccCCCc-eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          389 FNDNNQ-SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       389 l~~h~~-V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      +..+.. ..+++|+|+|+ .++++..++.|..|+..    ++ ...+..    +...+.+++++|+|+.+++...++.|.
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~----~~-~~~~~~----~~~~~~~l~~~~dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD----GQ-LSPEMH----PSHHQNGHCLNKQGHLIACSHGLRRLE   93 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT----SC-EEEEES----SCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC----CC-eEEEEC----CCCCcceeeECCCCcEEEEecCCCeEE
Confidence            444455 88999999998 78888889999999987    44 333332    456799999999999776666678899


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEee--cccCCCCCCeEEEEec--CCEEEE----Ee--------------C
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN--DIAADPKDSISCFALR--GSHLFS----AS--------------G  524 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~v~~l~~s--~~~l~s----~s--------------d  524 (701)
                      +||.                     .++++...  .........+.+++++  |+++++    ++              .
T Consensus        94 ~~d~---------------------~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~  152 (296)
T 3e5z_A           94 RQRE---------------------PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG  152 (296)
T ss_dssp             EECS---------------------TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred             EEcC---------------------CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence            9855                     33332211  0001112346678888  776665    32              2


Q ss_pred             CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-CCce---EEeecCCCCCeEEEEEecCCC
Q 005342          525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-TKKT---KAKLKGHQNRITCLAYSLSLN  599 (701)
Q Consensus       525 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~-~~~~---~~~l~~h~~~V~~v~~spdg~  599 (701)
                      +.|..+|.. ++. ..+..+......++|+|+| .+++.+.++.|++||+. +++.   ...+..+.+.+..++++++|+
T Consensus       153 ~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          153 RWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             CEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             cEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence            467777765 443 3444456677899999999 66888888999999987 5554   334433556678899999999


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEE-cCCCCEEEEEecCeEEEEECCCCce
Q 005342          600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSIHEGQIDVYEAPTLNH  670 (701)
Q Consensus       600 ~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~-spdg~~l~sg~Dg~I~iwd~~~g~~  670 (701)
                      +.++.  ++.|.+||.. |+..  ..+.    .+.   . +++++| +|+++.|+++..+.+.-++..++++
T Consensus       231 l~v~~--~~~v~~~~~~-g~~~--~~~~----~~~---~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~  289 (296)
T 3e5z_A          231 IWASA--GDGVHVLTPD-GDEL--GRVL----TPQ---T-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL  289 (296)
T ss_dssp             EEEEE--TTEEEEECTT-SCEE--EEEE----CSS---C-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred             EEEEc--CCeEEEECCC-CCEE--EEEE----CCC---C-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence            77666  7899999987 4322  2222    221   4 789999 5899989887667777778776654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.59  E-value=1.4e-12  Score=135.64  Aligned_cols=224  Identities=10%  Similarity=0.022  Sum_probs=150.4

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC----CcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d----g~i~vwd~  470 (701)
                      +.+++|+|+|++++++..++.|.+||..    +++...+..   .+...+.+++++|+|+.+++...+    +.|.+||.
T Consensus        47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~----~~~~~~~~~---~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           47 LEGLNFDRQGQLFLLDVFEGNIFKINPE----TKEIKRPFV---SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTT----TCCEEEEEE---CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             ccCcEECCCCCEEEEECCCCEEEEEeCC----CCcEEEEee---CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            7789999999988889999999999987    555544331   245679999999999977776655    57888854


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC-------CeEEEEeCCCCcEEEEe
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG-------GKISIFSLETFQTLATF  541 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd-------g~I~iwd~~~~~~~~~~  541 (701)
                                           .++..........+...+.+++++  |+++++...       +.|..+|..+++.....
T Consensus       120 ---------------------~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~  178 (333)
T 2dg1_A          120 ---------------------NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII  178 (333)
T ss_dssp             ---------------------TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred             ---------------------CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence                                 333322100001234578899998  666555442       56777777655543322


Q ss_pred             cCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCCC-CceEE--------eecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342          542 ANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCT-KKTKA--------KLKGHQNRITCLAYSLSLNVLVSSGADAQL  610 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg-~l~-~gs~dg~I~iwd~~~-~~~~~--------~l~~h~~~V~~v~~spdg~~l~s~s~D~~I  610 (701)
                      . ....+..++++|+| .++ +.+.++.|++||+.+ +....        .+.++ ..+..++++++|++.++...++.|
T Consensus       179 ~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v  256 (333)
T 2dg1_A          179 Q-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRV  256 (333)
T ss_dssp             E-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             c-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEE
Confidence            2 33457899999999 554 445678999999864 33222        12223 467889999999988888888999


Q ss_pred             EEEECCCCeeeeeeeeeeccC---CCCCCCCCeEEEEEcCCCCEEEEE
Q 005342          611 CVWDAVGWKKLCSKFLHSFQT---GLVPETTIVNHIQFHPDQIHLLSI  655 (701)
Q Consensus       611 ~vwd~~~g~~~~~~~l~~~~~---~~~~~~~~v~~v~~spdg~~l~sg  655 (701)
                      .+||.. ++..  ..+. ...   ++.   ..+.+++|+||++.|+++
T Consensus       257 ~~~d~~-g~~~--~~~~-~~~~~~g~~---~~~~~~~~~~dg~~L~v~  297 (333)
T 2dg1_A          257 LVFNKR-GYPI--GQIL-IPGRDEGHM---LRSTHPQFIPGTNQLIIC  297 (333)
T ss_dssp             EEECTT-SCEE--EEEE-CTTGGGTCS---CBCCEEEECTTSCEEEEE
T ss_pred             EEECCC-CCEE--EEEE-cCCCccccc---cCcceEEECCCCCEEEEE
Confidence            999985 4322  2222 111   111   268899999998777653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.57  E-value=3e-13  Score=141.54  Aligned_cols=239  Identities=7%  Similarity=-0.023  Sum_probs=146.0

Q ss_pred             eEEEEEcCCCCeEEEEcCC---Cc--EEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC----cE
Q 005342          395 SRESTSLPDADSAVCAKSL---EK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA----TH  465 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d---~~--v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg----~i  465 (701)
                      +..++|||||+.|+.++.+   +.  |.+|++.    +++...+..    +.. +.+++|+|||+.|+.++.+.    ..
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~----~g~~~~l~~----~~~-~~~~~wspdg~~l~~~~~~~~~~~~~  131 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLE----TLSSKKILE----AKN-IRSLEWNEDSRKLLIVGFKRREDEDF  131 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETT----TTEEEEEEE----ESE-EEEEEECTTSSEEEEEEECCCC----
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECC----CCceEEEEc----CCC-ccceeECCCCCEEEEEEccCCCcCCc
Confidence            5679999999999987754   33  6777776    565555442    223 89999999999998887431    00


Q ss_pred             EEEecCCCCcccccc---ccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CC-------eEEEEeCC
Q 005342          466 KLWKWQSNKQSLEEE---NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GG-------KISIFSLE  533 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg-------~I~iwd~~  533 (701)
                      .+.+- ..-...|..   .....+.+|+..+++.... +..  . .+..++|+ +.+++++. ++       ...+|.+.
T Consensus       132 ~~~~~-~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~-l~~--~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          132 IFEDD-VPAWFDDLGFFDGEKTTFWIFDTESEEVIEE-FEK--P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             ------CCCC---------CEEEEEEEETTTTEEEEE-EEE--E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             EEEcc-cceeecCcccccCccceEEEEECCCCeEEee-ecC--C-CcccccCCCCeEEEEEecccccccccccccEEEeC
Confidence            00000 000000000   0012345667777776222 222  2 67888999 33666665 32       33444433


Q ss_pred             CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC--------CcEEEEeCCCCceEEeecCCCCCeEE-EEEecCCCEEEE
Q 005342          534 TFQTLATFANPPPIATYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKAKLKGHQNRITC-LAYSLSLNVLVS  603 (701)
Q Consensus       534 ~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d--------g~I~iwd~~~~~~~~~l~~h~~~V~~-v~~spdg~~l~s  603 (701)
                      +++. ..+..+ ..+..+  +||| .|+.++.+        ..|++||  +++......+|...+.. +.|+ |+ ++++
T Consensus       207 ~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~  278 (347)
T 2gop_A          207 DGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFT  278 (347)
T ss_dssp             TTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEE
T ss_pred             CCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEE
Confidence            5543 333333 444444  9999 77776644        4788898  66666555667778886 8999 88 8899


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeE-EEEECCCCc
Q 005342          604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI-DVYEAPTLN  669 (701)
Q Consensus       604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I-~iwd~~~g~  669 (701)
                      ++.++.+++| +.+|+.   ..   +..+ .   ..|.+++|+|  .++++ +.++.. .||.+. |+
T Consensus       279 ~~~~~~~~l~-~~~g~~---~~---~~~~-~---~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          279 LFEEGSVNLY-IWDGEI---KP---IAKG-R---HWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             EEETTEEEEE-EESSSE---EE---EECS-S---SEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             EecCCcEEEE-EcCCce---EE---EecC-C---CeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence            9999999999 876542   11   2223 2   7899999999  56665 455543 677765 54

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.56  E-value=3.3e-12  Score=129.76  Aligned_cols=235  Identities=9%  Similarity=-0.001  Sum_probs=160.8

Q ss_pred             cCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEE
Q 005342          326 IMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRE  397 (701)
Q Consensus       326 h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~  397 (701)
                      +...+.  +++++|+       ..++.|.+||.. +.....+          ....             .-.+|.. +..
T Consensus        28 ~~~~p~--~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~----------~~~~-------------~~~~~~~~p~~   81 (286)
T 1q7f_A           28 QFTEPS--GVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQF----------GECG-------------KRDSQLLYPNR   81 (286)
T ss_dssp             CBSCEE--EEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEE----------CCBS-------------SSTTCBSSEEE
T ss_pred             ccCCCc--eEEECCCCCEEEEECCCCEEEEECCC-CcEEEEe----------cccC-------------CCcccccCceE
Confidence            334566  8888887       467889999976 4444431          1100             0013444 788


Q ss_pred             EEE-cCCCCeEEEEcC-CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342          398 STS-LPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       398 l~~-spdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  475 (701)
                      +++ .++++++++... ++.|.+|+..    ......+..   .+...+.+++++|+|+.+++...++.|.+||.     
T Consensus        82 i~~~~~~g~l~v~~~~~~~~i~~~d~~----g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-----  149 (286)
T 1q7f_A           82 VAVVRNSGDIIVTERSPTHQIQIYNQY----GQFVRKFGA---TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-----  149 (286)
T ss_dssp             EEEETTTTEEEEEECGGGCEEEEECTT----SCEEEEECT---TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-----
T ss_pred             EEEEcCCCeEEEEcCCCCCEEEEECCC----CcEEEEecC---ccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-----
Confidence            999 578887777753 7899999953    222222211   23457899999999997777667889999954     


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC--CCCeEE
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIATY  550 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~--~~~i~~  550 (701)
                                      . +......-...+...+.+++++  |+++++.. ++.|++||. +++.+..+..+  ...+..
T Consensus       150 ----------------~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~  211 (286)
T 1q7f_A          150 ----------------N-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIG  211 (286)
T ss_dssp             ----------------T-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEE
T ss_pred             ----------------C-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcE
Confidence                            2 2221110101334568899999  66555555 799999997 56666666543  356899


Q ss_pred             EEEcCCC-eEEEEeCCC-cEEEEeCCCCceEEeecCCCC--CeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          551 FILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       551 l~~spdg-~l~~gs~dg-~I~iwd~~~~~~~~~l~~h~~--~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      ++++|+| ++++...++ .|.+||. +++.+..+..+..  .+.+++++|+|+++++ +.|++|++|+....
T Consensus       212 i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          212 VGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            9999999 777777775 9999995 5667776665433  4789999999987777 67999999998663

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.56  E-value=9.4e-13  Score=152.10  Aligned_cols=242  Identities=11%  Similarity=0.020  Sum_probs=164.6

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCC-----cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLE-----KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT  464 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~-----~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  464 (701)
                      +|.. +..++|||||++||.+..++     .|++||+.    +++......    ....+..++|+|||+.|+.++.++.
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~----tg~~~~~~~----~~~~~~~~~wspDg~~l~~~~~~~~  193 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD----GAKELPDVL----ERVKFSCMAWTHDGKGMFYNAYPQQ  193 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT----TTEEEEEEE----EEECSCCEEECTTSSEEEEEECCCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC----CCCCCcccc----cCcccceEEEEeCCCEEEEEEECCc
Confidence            4555 88999999999999776543     89999998    666554332    1123567999999999999988765


Q ss_pred             ----------------EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe---
Q 005342          465 ----------------HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---  523 (701)
Q Consensus       465 ----------------i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s---  523 (701)
                                      |++|++.++.                 ....++.. . ..+...+..++|+  |++|+.++   
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~l~t~~-----------------~~~~~v~~-~-~~~~~~~~~~~~SpDg~~l~~~~~~~  254 (710)
T 2xdw_A          194 DGKSDGTETSTNLHQKLYYHVLGTDQ-----------------SEDILCAE-F-PDEPKWMGGAELSDDGRYVLLSIREG  254 (710)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCG-----------------GGCEEEEC-C-TTCTTCEEEEEECTTSCEEEEEEECS
T ss_pred             cccccccccccCCCCEEEEEECCCCc-----------------ccceEEec-c-CCCCeEEEEEEEcCCCCEEEEEEEcc
Confidence                            6666553221                 00012211 1 2345567889999  88877664   


Q ss_pred             ---CCeEEEEeCCC------Cc-EEEEecCCCCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCCc--eEEeecCCC
Q 005342          524 ---GGKISIFSLET------FQ-TLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKK--TKAKLKGHQ  586 (701)
Q Consensus       524 ---dg~I~iwd~~~------~~-~~~~~~~~~~~i~~l~~spdg-~l~~gs~d----g~I~iwd~~~~~--~~~~l~~h~  586 (701)
                         +..|++||+.+      +. ....+..+...+.. .|+|+| .++..+..    +.|++||+.++.  ....+..|.
T Consensus       255 ~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  333 (710)
T 2xdw_A          255 CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH  333 (710)
T ss_dssp             SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred             CCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence               35899999976      43 35556656555554 588888 55555443    369999998764  234444454


Q ss_pred             C--CeEEEEEecCCCEEEEEeCCCe--EEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-----ec
Q 005342          587 N--RITCLAYSLSLNVLVSSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HE  657 (701)
Q Consensus       587 ~--~V~~v~~spdg~~l~s~s~D~~--I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-----~D  657 (701)
                      .  .+..++|++++.++++...|+.  |++||+.+|+..  ..+.    .+.   +.+..++++|+++.++.+     ..
T Consensus       334 ~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~--~~l~----~~~---~~v~~~~~s~d~~~l~~~~ss~~~P  404 (710)
T 2xdw_A          334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL--KIFP----LEV---GSVVGYSGQKKDTEIFYQFTSFLSP  404 (710)
T ss_dssp             SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE--EEEC----CCS---SEEEEEECCTTCSEEEEEEECSSCC
T ss_pred             CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE--EecC----CCC---ceEEEEecCCCCCEEEEEEeCCCCC
Confidence            4  6888999988888888888884  667787666422  2232    223   778899999999876642     35


Q ss_pred             CeEEEEECCCCc
Q 005342          658 GQIDVYEAPTLN  669 (701)
Q Consensus       658 g~I~iwd~~~g~  669 (701)
                      ++|+.||+.+|+
T Consensus       405 ~~i~~~d~~tg~  416 (710)
T 2xdw_A          405 GIIYHCDLTKEE  416 (710)
T ss_dssp             CEEEEEETTSSS
T ss_pred             CEEEEEECCCCc
Confidence            789999998887

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.55  E-value=1.7e-12  Score=130.53  Aligned_cols=237  Identities=8%  Similarity=-0.058  Sum_probs=162.5

Q ss_pred             ceEEEEEcCCCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342          394 QSRESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  472 (701)
Q Consensus       394 ~V~~l~~spdg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  472 (701)
                      ...+++++|+|+.++ +.+.++.|..|+..    ......+.   ..+...+.+++++++|+.+++.. ++.|.+||.  
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~----~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~--   94 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATG----STGTTVLP---FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAA--   94 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC---------EECC---CCSCCSCCCEEECTTCCEEEEET-TTEEEEECT--
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCC----CcccceEe---eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeC--
Confidence            367899999999777 55778999999875    33222211   12335678899999999555544 888988854  


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeE
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT  549 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~  549 (701)
                                         .++....  +.......+.+++++  |+.+++.. ++.|.+||..+.............+.
T Consensus        95 -------------------~~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~  153 (270)
T 1rwi_B           95 -------------------GSNNQTV--LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPD  153 (270)
T ss_dssp             -------------------TCSCCEE--CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCC
T ss_pred             -------------------CCceEee--eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCce
Confidence                               3322221  111223567899998  66555555 78999998765543332222334678


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          550 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       550 ~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      .++++|+| ++++...++.|.+||..+.........+...+.+++++++|.+.++...++.|.+||..+....   .   
T Consensus       154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~---~---  227 (270)
T 1rwi_B          154 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST---V---  227 (270)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE---E---
T ss_pred             eEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce---e---
Confidence            99999999 7777777889999998876654433334467899999999988888778899999998764311   1   


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH  670 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~  670 (701)
                      ....+.   ..+.+++++|+|+++++. .++.|++++....+.
T Consensus       228 ~~~~~~---~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          228 LPFTGL---NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CCCCSC---SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             eccCCC---CCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            111221   568999999999977775 799999999876554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=9.6e-11  Score=119.16  Aligned_cols=272  Identities=10%  Similarity=-0.005  Sum_probs=183.9

Q ss_pred             ecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eE
Q 005342          325 QIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SR  396 (701)
Q Consensus       325 ~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~  396 (701)
                      .+...+.  ++++.|+       ..++.|.+||.. +......         .                   ..+.. +.
T Consensus        12 ~~~~~~~--~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~---------~-------------------~~~~~~~~   60 (299)
T 2z2n_A           12 NQDTGPY--GITVSDKGKVWITQHKANMISCINLD-GKITEYP---------L-------------------PTPDAKVM   60 (299)
T ss_dssp             SSSCCEE--EEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE---------C-------------------SSTTCCEE
T ss_pred             CcCCCcc--ceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec---------C-------------------CcccCcee
Confidence            3445677  8888887       346788888877 4433220         0                   01223 88


Q ss_pred             EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342          397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  476 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  476 (701)
                      .++++|+|...++...++.|..|+..     +....+..+  .....+.+++++|+|+.+++...++.+..||.      
T Consensus        61 ~i~~~~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~------  127 (299)
T 2z2n_A           61 CLTISSDGEVWFTENAANKIGRITKK-----GIIKEYTLP--NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD------  127 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-----SCEEEEECS--STTCCEEEEEECTTSCEEEEETTTTEEEEECT------
T ss_pred             eEEECCCCCEEEeCCCCCeEEEECCC-----CcEEEEeCC--CcCCCceeeEECCCCCEEEEecCCceEEEECC------
Confidence            99999999998888878899999874     333333332  23467899999999987777666788888843      


Q ss_pred             ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE-ecCCCCCeEEEE
Q 005342          477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFI  552 (701)
Q Consensus       477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~  552 (701)
                                      ++....... ......+..++++  |...++.. ++.|..||. +++.... .......+..++
T Consensus       128 ----------------~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~  189 (299)
T 2z2n_A          128 ----------------DGKIREYEL-PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGIT  189 (299)
T ss_dssp             ----------------TCCEEEEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred             ----------------CCCEEEecC-CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEE
Confidence                            233221111 1234568889998  65555555 689999999 6665432 333445688999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc
Q 005342          553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  630 (701)
Q Consensus       553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~  630 (701)
                      ++++| +.++...++.|.+||. +++.... ...+...+.+++++++|++.++...++.|.+||. ++..   ..+. +.
T Consensus       190 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~---~~~~-~~  263 (299)
T 2z2n_A          190 KGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII---EEYP-IQ  263 (299)
T ss_dssp             ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE---EEEE-CS
T ss_pred             ECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce---EEEe-CC
Confidence            99999 7666667889999998 6654332 2334567899999999997777667899999998 4431   2222 22


Q ss_pred             CCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342          631 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN  669 (701)
Q Consensus       631 ~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~  669 (701)
                       .+.   ..+.++++ ++|++.++...+.+..++..+++
T Consensus       264 -~~~---~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~  297 (299)
T 2z2n_A          264 -IKS---AEPHGICF-DGETIWFAMECDKIGKLTLIKDN  297 (299)
T ss_dssp             -SSS---CCEEEEEE-CSSCEEEEETTTEEEEEEEC---
T ss_pred             -CCC---CccceEEe-cCCCEEEEecCCcEEEEEcCccc
Confidence             222   66899999 99988777656788888887654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.52  E-value=2.9e-12  Score=133.32  Aligned_cols=236  Identities=9%  Similarity=-0.020  Sum_probs=162.0

Q ss_pred             CCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccccc---ccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--
Q 005342          441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE---NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  515 (701)
Q Consensus       441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--  515 (701)
                      -+.+.+++++|+|+.+++.+.++.+.+++...........   ...-.+.+||+.++++... +..++...+..++++  
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-SGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-ECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-cCCCccCCceEEEECCC
Confidence            4679999999999988887777654443332221111100   1112466778888886643 223445678899999  


Q ss_pred             CCEEEEEe-CCeEEEEeCCCCc-EEEEe---------cCCCCCeEEEEEcC-CC-eEEEEe-CCCcEEEEeCCCCceEEe
Q 005342          516 GSHLFSAS-GGKISIFSLETFQ-TLATF---------ANPPPIATYFILLP-QD-LFAFGF-DDSSILVHCPCTKKTKAK  581 (701)
Q Consensus       516 ~~~l~s~s-dg~I~iwd~~~~~-~~~~~---------~~~~~~i~~l~~sp-dg-~l~~gs-~dg~I~iwd~~~~~~~~~  581 (701)
                      |+++++.. ++.|++||..... .+..+         .++......++++| +| ++++.+ .++.|++|| .+++.+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            77666666 7999999985442 45555         23344678999999 67 777775 689999999 56777776


Q ss_pred             ecC----------CCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342          582 LKG----------HQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  650 (701)
Q Consensus       582 l~~----------h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~  650 (701)
                      +..          +-.....++++|+ +.++++...+++|++||..+|+...  .+. .. .+.   ..+.+++|+| +.
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~--~~~-~~-~~~---~~~~~~~~~p-g~  252 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR--EIK-HA-SFG---RNVFAISYIP-GF  252 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--EEC-CT-TTT---TCEEEEEEET-TE
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE--EEe-cc-ccC---CCcceeeecC-CE
Confidence            642          2234899999998 7788888889999999999775332  222 11 222   6788999999 43


Q ss_pred             EEEE-E-------ecCeEEEEECCCCceeeeee---e----eeEEEEEeeE
Q 005342          651 HLLS-I-------HEGQIDVYEAPTLNHTSQVL---L----ISHIMFVQIV  686 (701)
Q Consensus       651 ~l~s-g-------~Dg~I~iwd~~~g~~~~~l~---~----i~~~~fs~~~  686 (701)
                      .+++ |       .+..|++||..+|+.+..+.   +    ..+++++|+.
T Consensus       253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG  303 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG  303 (329)
T ss_dssp             EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred             EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence            3333 2       24589999999999998874   2    7888888764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=4.4e-12  Score=128.23  Aligned_cols=240  Identities=13%  Similarity=0.010  Sum_probs=170.1

Q ss_pred             CCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCC-CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccccc
Q 005342          403 DADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFG-GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE  480 (701)
Q Consensus       403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~-~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~  480 (701)
                      .++.|++++.|+.|.+||..    +++. +++..    +. ..+.++.++|+|+.++  +.++.|..|            
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~----tG~~~w~~~~----~~~~~~~~~~~~pdG~ilv--s~~~~V~~~------------   61 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKD----TKEIVWEYPL----EKGWECNSVAATKAGEILF--SYSKGAKMI------------   61 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETT----TTEEEEEEEC----CTTCCCCEEEECTTSCEEE--ECBSEEEEE------------
T ss_pred             CCcEEEeeCCCCEEEEEECC----CCeEEEEeCC----CccCCCcCeEECCCCCEEE--eCCCCEEEE------------
Confidence            45889999999999999986    4543 34332    22 4678899999999877  456777777            


Q ss_pred             ccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCC------CCCeEE
Q 005342          481 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP------PPIATY  550 (701)
Q Consensus       481 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~------~~~i~~  550 (701)
                               |+ +|+.+-. +..+....+.++.+.  |+++++.+  ++.|..+|. +|+.+..+...      ......
T Consensus        62 ---------d~-~G~~~W~-~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~  129 (276)
T 3no2_A           62 ---------TR-DGRELWN-IAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ  129 (276)
T ss_dssp             ---------CT-TSCEEEE-EECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC
T ss_pred             ---------CC-CCCEEEE-EcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC
Confidence                     44 4443322 222223467777777  77877765  467888886 78877776421      123456


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342          551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  629 (701)
Q Consensus       551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~  629 (701)
                      +++.++| ++++.+.++.|..||.. |+.+.++..+ ..+.++...++|+.+++++.+++|..+|..+|+.+....-..+
T Consensus       130 v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~  207 (276)
T 3no2_A          130 INKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI  207 (276)
T ss_dssp             CEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS
T ss_pred             ceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC
Confidence            7889999 99999999999999987 9999888754 4566788889999999999999999999998875432221111


Q ss_pred             cCCCCCCCCCeEEEEEcCCCCEEEEEecC---------eEEEEEC-CCCceeeeeee------eeEEE
Q 005342          630 QTGLVPETTIVNHIQFHPDQIHLLSIHEG---------QIDVYEA-PTLNHTSQVLL------ISHIM  681 (701)
Q Consensus       630 ~~~~~~~~~~v~~v~~spdg~~l~sg~Dg---------~I~iwd~-~~g~~~~~l~~------i~~~~  681 (701)
                      .....   ..+.++...++|..++++.+|         ..+++++ .+|+.+-++..      ++++|
T Consensus       208 ~~~~l---~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          208 EGVQL---FFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             BSCCC---SEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred             CCccc---cccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence            11122   457889999999999886433         3467777 57888877766      66654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.51  E-value=2.9e-12  Score=133.28  Aligned_cols=251  Identities=11%  Similarity=0.050  Sum_probs=171.7

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |++++|+|++..++..+.++.++.|.-      .....+.    .+...+.+++|+|+|+.++++..++.|.+||.    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~----   73 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPIISESELQTITA------EPWLEIS----KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINP----   73 (333)
T ss_dssp             CCBCCSCGGGGCSSCCCCGGGSCEEEC------EEEEEEE----SSCCCEEEEEECTTSCEEEEETTTCEEEEECT----
T ss_pred             cceeeecCCccceeEEeecccCccccc------ceeEEEe----ccCccccCcEECCCCCEEEEECCCCEEEEEeC----
Confidence            677889999988888888889999932      2222222    24566799999999997777778899999854    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C----CeEEEEeCCCCcEEEEec--CCC
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFA--NPP  545 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d----g~I~iwd~~~~~~~~~~~--~~~  545 (701)
                                       .+++.... . ..+...+.+++++  |+++++.. +    +.|.+||..++.....+.  .+.
T Consensus        74 -----------------~~~~~~~~-~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           74 -----------------ETKEIKRP-F-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             -----------------TTCCEEEE-E-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             -----------------CCCcEEEE-e-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence                             44543321 1 1345679999998  66666655 4    589999998776543333  234


Q ss_pred             CCeEEEEEcCCC-eEEEEeC------CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCC
Q 005342          546 PIATYFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVG  617 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~------dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~  617 (701)
                      ..+..++++|+| ++++...      .+.|+.+|..+++.... ..+...+..++|+|+|+.++ +.+.++.|++||+.+
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            568999999999 6665543      35788888766554432 22334578999999998654 555688999999964


Q ss_pred             -Ceeeee---eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----------eeEEEE
Q 005342          618 -WKKLCS---KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----------ISHIMF  682 (701)
Q Consensus       618 -g~~~~~---~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----------i~~~~f  682 (701)
                       +.....   .....+. ++    ..+..++++++|++.++. .++.|.+||. +++.+..+..          +.+++|
T Consensus       214 ~g~~~~~~~~~~~~~~~-~~----~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~  287 (333)
T 2dg1_A          214 DGVTIQPFGATIPYYFT-GH----EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQF  287 (333)
T ss_dssp             TSSSEEEEEEEEEEECC-SS----SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred             CCcCcccccceEEEecC-CC----CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEE
Confidence             322111   1111111 21    467889999999987775 5789999998 5776666542          567888


Q ss_pred             Eee
Q 005342          683 VQI  685 (701)
Q Consensus       683 s~~  685 (701)
                      +|+
T Consensus       288 ~~d  290 (333)
T 2dg1_A          288 IPG  290 (333)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.48  E-value=2.6e-12  Score=147.97  Aligned_cols=242  Identities=11%  Similarity=-0.023  Sum_probs=159.6

Q ss_pred             CCCc-eEEEEEcCCCCeEE-----EEcCCCcEEEEeccccCCCCcee-EeecCCCCCCCCEEEEEEecCCCEEEEEECCC
Q 005342          391 DNNQ-SRESTSLPDADSAV-----CAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA  463 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~-----s~s~d~~v~iw~~~~~~~~~~~~-~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg  463 (701)
                      +|.. +..++|||||++||     .|+.+..|++||+.    +++.. .-.+    .......++|+|||+.|+.++.|+
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~----tg~~~~~~~~----~~~~~~~~~wspDg~~l~~~~~d~  189 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD----SGEWSKVDVI----EGGKYATPKWTPDSKGFYYEWLPT  189 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT----TCCBCSSCCB----SCCTTCCCEECTTSSEEEEEECCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC----CCCCcCCccc----CcccccceEEecCCCEEEEEEecC
Confidence            5656 89999999999999     44556789999998    55433 1011    111126789999999999998876


Q ss_pred             c-------------EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CC--
Q 005342          464 T-------------HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG--  525 (701)
Q Consensus       464 ~-------------i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg--  525 (701)
                      .             |++|++.++.                 ....++.. . ..+...+.++.|+  |++|+.++ ++  
T Consensus       190 ~~~~~~~~~~~~~~v~~~~l~t~~-----------------~~~~lv~~-~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          190 DPSIKVDERPGYTTIRYHTLGTEP-----------------SKDTVVHE-R-TGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CTTSCGGGGGGGCEEEEEETTSCG-----------------GGCEEEEC-C-CCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             CCCCccccCCCCCEEEEEECCCCc-----------------hhceEEEe-c-CCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            5             7777653321                 00113321 1 2345678899999  88887776 55  


Q ss_pred             --eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCce---EEeecCC-CCCeEEEEEe
Q 005342          526 --KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKT---KAKLKGH-QNRITCLAYS  595 (701)
Q Consensus       526 --~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs---~dg~I~iwd~~~~~~---~~~l~~h-~~~V~~v~~s  595 (701)
                        .|++||..++... .+..+...+....+ ++| +++.+.   .++.|++||+.++..   ...+..+ ...+..++|+
T Consensus       251 ~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          251 ENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             EEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             ceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence              7788877666543 34445555566666 566 555444   357999999987753   3333333 4467888888


Q ss_pred             cCCCEEEEEeCCCeEEEEECC-CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE---E--ecCeEEEEECCCCc
Q 005342          596 LSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I--HEGQIDVYEAPTLN  669 (701)
Q Consensus       596 pdg~~l~s~s~D~~I~vwd~~-~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s---g--~Dg~I~iwd~~~g~  669 (701)
                       ++.++++...|+..++|.+. .|...  ..   +..+..   +.+..++++|+++.++.   +  ..++|++||+.+++
T Consensus       329 -~~~lv~~~~~dg~~~l~~~~~~g~~~--~~---l~~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          329 -GGHLSLEYLKDATSEVRVATLKGKPV--RT---VQLPGV---GAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             -TTEEEEEEEETTEEEEEEEETTCCEE--EE---CCCSSS---SEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCee--EE---ecCCCC---eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence             77788899999988888665 33211  22   222222   66788899999987764   2  46789999998887


Q ss_pred             e
Q 005342          670 H  670 (701)
Q Consensus       670 ~  670 (701)
                      .
T Consensus       400 ~  400 (695)
T 2bkl_A          400 S  400 (695)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.48  E-value=7.3e-11  Score=131.18  Aligned_cols=265  Identities=12%  Similarity=0.042  Sum_probs=172.4

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK  420 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~  420 (701)
                      ..+++|.++|..+++.+..+          ..                   ...+..+.|+|||+++++++.|+.|.+||
T Consensus       174 ~~~~~V~viD~~t~~v~~~i----------~~-------------------g~~p~~v~~SpDGr~lyv~~~dg~V~viD  224 (567)
T 1qks_A          174 RDAGQIALIDGSTYEIKTVL----------DT-------------------GYAVHISRLSASGRYLFVIGRDGKVNMID  224 (567)
T ss_dssp             TTTTEEEEEETTTCCEEEEE----------EC-------------------SSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEEE----------eC-------------------CCCccceEECCCCCEEEEEcCCCeEEEEE
Confidence            55889999999999887763          11                   11256899999999999999999999999


Q ss_pred             ccccCCCCc-eeEeecCCCCCCCCEEEEEEe----cCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCC
Q 005342          421 LQLINEPSE-CRTLLLPDNSFGGRVVRLIYS----HSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSK  494 (701)
Q Consensus       421 ~~~~~~~~~-~~~l~~~~~~~~~~v~~l~~s----pdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~  494 (701)
                      +...  +.+ ...+..     ......++|+    |||+++++++. ++++.++|..+                     .
T Consensus       225 ~~~~--t~~~v~~i~~-----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t---------------------~  276 (567)
T 1qks_A          225 LWMK--EPTTVAEIKI-----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET---------------------L  276 (567)
T ss_dssp             TTSS--SCCEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---------------------C
T ss_pred             CCCC--CCcEeEEEec-----CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC---------------------C
Confidence            8410  222 222221     3356789999    69999888877 69999996533                     3


Q ss_pred             eEEeecccC--------CC-CCCeEEEEec--CCEEE-EEe-CCeEEEEeCCCCcE--EEEecCCCCCeEEEEEcCCC-e
Q 005342          495 LVMTNDIAA--------DP-KDSISCFALR--GSHLF-SAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD-L  558 (701)
Q Consensus       495 ~~~~~~~~~--------~~-~~~v~~l~~s--~~~l~-s~s-dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~spdg-~  558 (701)
                      +.+...-..        .| ...+..+..+  +..++ +.. +|.|.++|..+.+.  +..+. .......+.|+|+| +
T Consensus       277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~  355 (567)
T 1qks_A          277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRY  355 (567)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCE
T ss_pred             cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCE
Confidence            322110000        01 2256677777  44444 444 69999999876542  23333 34456789999999 5


Q ss_pred             EEE-EeCCCcEEEEeCCCCceEEeecC-----CCCCeEEEEEecCCC-EEEEEe-CCCeEEEEECCCCee--eeeeeeee
Q 005342          559 FAF-GFDDSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSLSLN-VLVSSG-ADAQLCVWDAVGWKK--LCSKFLHS  628 (701)
Q Consensus       559 l~~-gs~dg~I~iwd~~~~~~~~~l~~-----h~~~V~~v~~spdg~-~l~s~s-~D~~I~vwd~~~g~~--~~~~~l~~  628 (701)
                      +++ +..+++|.++|..+++.+..+..     |.+.-.. -++|++. ..+++. .+++|.++|..+++.  ...+.+++
T Consensus       356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~  434 (567)
T 1qks_A          356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS  434 (567)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEE
Confidence            554 45678999999999988776653     4332222 2588754 444543 568999999987320  00112222


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEEe--------cCeEEEEECCCC
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTL  668 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg~--------Dg~I~iwd~~~g  668 (701)
                      +....    ..-..+..+|+++++.+..        .++|.++|+.+.
T Consensus       435 i~~~g----~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          435 FPALG----GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EECSC----SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EecCC----CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            32221    2224577899999999853        469999999877

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.47  E-value=3.2e-12  Score=147.23  Aligned_cols=238  Identities=9%  Similarity=-0.041  Sum_probs=155.7

Q ss_pred             cCcceeeeEEEEccC------------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          326 IMDWWVPYCINVMPN------------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       326 h~~~v~~~~l~fspd------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      |...+.  .++||||            +.+.+|++||+.+|+.+..        ..+.+.                    
T Consensus       119 ~~~~~~--~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--------~~~~~~--------------------  168 (695)
T 2bkl_A          119 GTVSLG--TWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--------DVIEGG--------------------  168 (695)
T ss_dssp             SCEEEE--EEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--------CCBSCC--------------------
T ss_pred             CCEEEE--EEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--------cccCcc--------------------
Confidence            444566  8999999            3457999999999876511        001111                    


Q ss_pred             ceEEEEEcCCCCeEEEEcCCCc-------------EEEEeccccCCCCcee-EeecCCCCCCCCEEEEEEecCCCEEEEE
Q 005342          394 QSRESTSLPDADSAVCAKSLEK-------------SVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVAL  459 (701)
Q Consensus       394 ~V~~l~~spdg~~l~s~s~d~~-------------v~iw~~~~~~~~~~~~-~l~~~~~~~~~~v~~l~~spdg~~l~s~  459 (701)
                      ....++|+|||+.|+.++.|..             |++|++.    +++.. .+......+...+.++.|||||++|+.+
T Consensus       169 ~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~----t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~  244 (695)
T 2bkl_A          169 KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLG----TEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVY  244 (695)
T ss_dssp             TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETT----SCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEE
T ss_pred             cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECC----CCchhceEEEecCCCCEEEEEEEECCCCCEEEEE
Confidence            0135889999999999988776             9999997    33311 1122333455678999999999999888


Q ss_pred             ECCC--cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe----CCeEEEEeC
Q 005342          460 TQTA--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS----GGKISIFSL  532 (701)
Q Consensus       460 s~dg--~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s----dg~I~iwd~  532 (701)
                      +.++  ...+|-+                   +..++....  +. .+...+....++ |++++.+.    ++.|.+||+
T Consensus       245 ~~~~~~~~~l~~~-------------------~~~~~~~~~--l~-~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~  302 (695)
T 2bkl_A          245 ILRGWSENDVYWK-------------------RPGEKDFRL--LV-KGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDP  302 (695)
T ss_dssp             EEETTTEEEEEEE-------------------CTTCSSCEE--EE-ECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBT
T ss_pred             EeCCCCceEEEEE-------------------cCCCCceEE--ee-cCCCceEEEEecCCcEEEEECCCCCCCEEEEEeC
Confidence            7655  4444422                   333443221  11 233344555556 66434433    378999999


Q ss_pred             CCCcE---EEEecCC-CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-CCceEEeecCC-CCCeEEEEEecCCCEEEEE-
Q 005342          533 ETFQT---LATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPC-TKKTKAKLKGH-QNRITCLAYSLSLNVLVSS-  604 (701)
Q Consensus       533 ~~~~~---~~~~~~~-~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~-~~~~~~~l~~h-~~~V~~v~~spdg~~l~s~-  604 (701)
                      .++..   ...+..+ ...+..++++ ++ ++++...|+..++|.+. +++....+..+ .+.+..++++|+++.++.. 
T Consensus       303 ~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~  381 (695)
T 2bkl_A          303 AKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF  381 (695)
T ss_dssp             TBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred             CCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence            87653   3333333 4457888888 66 88899999987777554 45566666655 5678888999999866632 


Q ss_pred             ---eCCCeEEEEECCCCee
Q 005342          605 ---GADAQLCVWDAVGWKK  620 (701)
Q Consensus       605 ---s~D~~I~vwd~~~g~~  620 (701)
                         ...++|++||+.+++.
T Consensus       382 ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          382 TSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EETTEEEEEEEEETTTCCE
T ss_pred             cCCCCCCEEEEEECCCCcE
Confidence               2357899999998863

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.46  E-value=2e-11  Score=124.71  Aligned_cols=238  Identities=9%  Similarity=0.048  Sum_probs=161.7

Q ss_pred             ccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCc
Q 005342          316 KSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSS  387 (701)
Q Consensus       316 ~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~  387 (701)
                      .+..+..+..+.....  +++|+|+        ..++.|..||..++  ...+                           
T Consensus        16 ~~~~~~~l~~~~~~~e--g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~---------------------------   64 (296)
T 3e5z_A           16 AGAEARRLADGFTWTE--GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE---------------------------   64 (296)
T ss_dssp             TTCCCEEEECCCSSEE--EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE---------------------------
T ss_pred             CCCcEEEEecCCcccc--CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE---------------------------
Confidence            3445566666667777  8999998        45788999988876  3321                           


Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecC-CCCCCCCEEEEEEecCCCEEEEEECCC--
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP-DNSFGGRVVRLIYSHSGDFLVALTQTA--  463 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg--  463 (701)
                        ..+.. +.+++++|+|+++++...++.|.+|+..    +++...+... .......+.+++++|+|+.+++.+..|  
T Consensus        65 --~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~  138 (296)
T 3e5z_A           65 --MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP----GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGID  138 (296)
T ss_dssp             --ESSCSSEEEEEECTTCCEEEEETTTTEEEEECST----TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred             --ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC----CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccc
Confidence              12334 7899999999998888888999999986    5554443211 111224567899999999777632111  


Q ss_pred             -------------cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeE
Q 005342          464 -------------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI  527 (701)
Q Consensus       464 -------------~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I  527 (701)
                                   .-.||.+                   ++. +....  + ..+......++|+  |+.+++.+ ++.|
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~-------------------~~~-g~~~~--~-~~~~~~~~gi~~s~dg~~lv~~~~~~~i  195 (296)
T 3e5z_A          139 KPEEGYGGEMELPGRWVFRL-------------------APD-GTLSA--P-IRDRVKPNGLAFLPSGNLLVSDTGDNAT  195 (296)
T ss_dssp             CGGGSSCCCCCSSSCEEEEE-------------------CTT-SCEEE--E-ECCCSSEEEEEECTTSCEEEEETTTTEE
T ss_pred             cccccccccccCCCcEEEEE-------------------CCC-CCEEE--e-ecCCCCCccEEECCCCCEEEEeCCCCeE
Confidence                         1233322                   444 44322  1 1344567889998  77775555 7899


Q ss_pred             EEEeCC-CCcE---EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE-ecCCCEE
Q 005342          528 SIFSLE-TFQT---LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY-SLSLNVL  601 (701)
Q Consensus       528 ~iwd~~-~~~~---~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~-spdg~~l  601 (701)
                      .+||+. +++.   ...+..+...+..++++++| ++++.  ++.|.+||.. ++.+..+..+.. +++++| +|+++.|
T Consensus       196 ~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L  271 (296)
T 3e5z_A          196 HRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTL  271 (296)
T ss_dssp             EEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEE
T ss_pred             EEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEE
Confidence            999986 5554   33443344556789999999 54444  7899999976 778888887777 999999 5899988


Q ss_pred             EEEeCCCeEEEEECCCC
Q 005342          602 VSSGADAQLCVWDAVGW  618 (701)
Q Consensus       602 ~s~s~D~~I~vwd~~~g  618 (701)
                      +.++.+ .+..++.++.
T Consensus       272 ~v~t~~-~l~~~~~~~~  287 (296)
T 3e5z_A          272 YMTVST-EFWSIETNVR  287 (296)
T ss_dssp             EEEETT-EEEEEECSCC
T ss_pred             EEEcCC-eEEEEEcccc
Confidence            888875 4556666664

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.46  E-value=5.2e-10  Score=113.67  Aligned_cols=234  Identities=9%  Similarity=0.011  Sum_probs=165.6

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      +.++++.|+|+..++...++.|..|+..     +....+..+  .+...+.+++++++|...++...++.|..|+.    
T Consensus        17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----~~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~----   85 (299)
T 2z2n_A           17 PYGITVSDKGKVWITQHKANMISCINLD-----GKITEYPLP--TPDAKVMCLTISSDGEVWFTENAANKIGRITK----   85 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-----CCEEEEECS--STTCCEEEEEECTTSCEEEEETTTTEEEEECT----
T ss_pred             ccceEECCCCCEEEEecCCCcEEEEcCC-----CCeEEecCC--cccCceeeEEECCCCCEEEeCCCCCeEEEECC----
Confidence            8899999999988888778899999974     233333322  23467999999999997777666788888854    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE-ecCCCCCeEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATY  550 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~  550 (701)
                                       . +......+ ......+.+++++  |...++.. ++.|..||. +++.... .......+..
T Consensus        86 -----------------~-g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~  145 (299)
T 2z2n_A           86 -----------------K-GIIKEYTL-PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSF  145 (299)
T ss_dssp             -----------------T-SCEEEEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             -----------------C-CcEEEEeC-CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCce
Confidence                             2 22211111 1234568889998  65555555 789999998 5554332 2334456899


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      ++++++| .+++...++.|..||. +++.... +..+...+.+++++++|++.++...++.|.+||. +++..   .+. 
T Consensus       146 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~-  219 (299)
T 2z2n_A          146 ITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT---EFK-  219 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEE-
T ss_pred             EEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE---EEE-
Confidence            9999999 7676667789999998 6665442 3334456889999999998777777889999999 66422   122 


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH  670 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~  670 (701)
                      ...+ .   ..+.+++++++|++.++. .++.|..||. +++.
T Consensus       220 ~~~~-~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~  257 (299)
T 2z2n_A          220 IPTP-N---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII  257 (299)
T ss_dssp             CSST-T---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE
T ss_pred             CCCC-C---CCceeEEECCCCCEEEeccCCceEEEECC-CCce
Confidence            2222 2   678999999999977665 6789999998 5653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.43  E-value=2.2e-11  Score=140.59  Aligned_cols=252  Identities=12%  Similarity=0.034  Sum_probs=161.3

Q ss_pred             CCCCeEEEEcCCC---cEEEEeccccCCCCceeEeecC---CCCCCCCEEEEEEecCCCEEEEEECCC-----cEEEEec
Q 005342          402 PDADSAVCAKSLE---KSVNLKLQLINEPSECRTLLLP---DNSFGGRVVRLIYSHSGDFLVALTQTA-----THKLWKW  470 (701)
Q Consensus       402 pdg~~l~s~s~d~---~v~iw~~~~~~~~~~~~~l~~~---~~~~~~~v~~l~~spdg~~l~s~s~dg-----~i~vwd~  470 (701)
                      |+|++++....++   .-.+|.....  .+....+.-+   ..++...+..++|||||++|+.++.++     .|++||+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~  158 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSL--EGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV  158 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESST--TSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCC--CCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence            8888877654332   1245554311  2222222101   112334688999999999998877643     6777754


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCe----------------EEEEe
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK----------------ISIFS  531 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~----------------I~iwd  531 (701)
                                           .+++.....+   ....+.+++|+  |+.|+.++ ++.                |++|+
T Consensus       159 ---------------------~tg~~~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  214 (710)
T 2xdw_A          159 ---------------------DGAKELPDVL---ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHV  214 (710)
T ss_dssp             ---------------------TTTEEEEEEE---EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEE
T ss_pred             ---------------------CCCCCCcccc---cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEE
Confidence                                 5565443212   11235678999  78888877 654                99999


Q ss_pred             CCCCcE--EEEecC--CCCCeEEEEEcCCC-eEEEEeC-----CCcEEEEeCCC------Cc-eEEeecCCCCCeEEEEE
Q 005342          532 LETFQT--LATFAN--PPPIATYFILLPQD-LFAFGFD-----DSSILVHCPCT------KK-TKAKLKGHQNRITCLAY  594 (701)
Q Consensus       532 ~~~~~~--~~~~~~--~~~~i~~l~~spdg-~l~~gs~-----dg~I~iwd~~~------~~-~~~~l~~h~~~V~~v~~  594 (701)
                      +.+++.  ...+..  +...+..+.|+||| +|+.++.     +..|++||+.+      +. ....+..+...+.. .|
T Consensus       215 l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~  293 (710)
T 2xdw_A          215 LGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YV  293 (710)
T ss_dssp             TTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EE
T ss_pred             CCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EE
Confidence            988762  223332  34557899999999 7776654     56899999986      43 35566666666655 58


Q ss_pred             ecCCCEEEEEeCC----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCe--EEEEECCC
Q 005342          595 SLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ--IDVYEAPT  667 (701)
Q Consensus       595 spdg~~l~s~s~D----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~--I~iwd~~~  667 (701)
                      +|+|+.|+..+.+    +.|.+||+.++.......   +..++.  ...+..++|++++.+++++ .|+.  |.+|++.+
T Consensus       294 s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~--~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~  368 (710)
T 2xdw_A          294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV---LVPEHE--KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT  368 (710)
T ss_dssp             EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EECCCS--SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT
T ss_pred             eccCCEEEEEECCCCCCCEEEEEeCCCCCccccee---ccCCCC--CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC
Confidence            8999987766653    369999998863211122   222321  0367889999777777775 6764  67788878


Q ss_pred             Cceeeeeee----eeEEEEEee
Q 005342          668 LNHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       668 g~~~~~l~~----i~~~~fs~~  685 (701)
                      |+.++.+..    +.+++++|+
T Consensus       369 g~~~~~l~~~~~~v~~~~~s~d  390 (710)
T 2xdw_A          369 GALLKIFPLEVGSVVGYSGQKK  390 (710)
T ss_dssp             CCEEEEECCCSSEEEEEECCTT
T ss_pred             CCEEEecCCCCceEEEEecCCC
Confidence            887777764    777778764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.43  E-value=3.2e-10  Score=119.66  Aligned_cols=260  Identities=11%  Similarity=-0.008  Sum_probs=164.4

Q ss_pred             eEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc----------CCC
Q 005342          345 TISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK----------SLE  414 (701)
Q Consensus       345 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s----------~d~  414 (701)
                      +|.++|..+++.+..+          +.                  +.. - .++++|||++++.+.          .++
T Consensus        48 ~v~v~D~~t~~~~~~i----------~~------------------g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~   97 (373)
T 2mad_H           48 QQWVLDAGSGSILGHV----------NG------------------GFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             EEEEEECCCCeEEEEe----------cC------------------CCC-C-CeEECCCCCEEEEEeccccccccCCCCC
Confidence            8899999988876652          11                  000 1 589999999999886          367


Q ss_pred             cEEEEeccccCCCCcee-EeecCCCC---CCCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceeeEE
Q 005342          415 KSVNLKLQLINEPSECR-TLLLPDNS---FGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQL  488 (701)
Q Consensus       415 ~v~iw~~~~~~~~~~~~-~l~~~~~~---~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~~  488 (701)
                      .|.+||..    +.+.. .+..+...   +......++|+|||+++++++.  ++.|.++                    
T Consensus        98 ~v~viD~~----t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~vi--------------------  153 (373)
T 2mad_H           98 YVEVFDPV----TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV--------------------  153 (373)
T ss_pred             eEEEEECC----CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEE--------------------
Confidence            89999997    33222 22221000   0123458899999999998875  4778887                    


Q ss_pred             eeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEec-----CCCCC-eEEEEEcCCC-eE
Q 005342          489 YQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-----NPPPI-ATYFILLPQD-LF  559 (701)
Q Consensus       489 ~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~-----~~~~~-i~~l~~spdg-~l  559 (701)
                       | .+++++...+.  ....+ .+... ...+++.+ ||.+.++|. +++......     ....+ .....+.+++ .+
T Consensus       154 -D-~t~~~~~~~i~--~~~~~-~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  227 (373)
T 2mad_H          154 -V-QGGSSDDQLLS--SPTCY-HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI  227 (373)
T ss_pred             -E-CCCCEEeEEcC--CCceE-EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEE
Confidence             5 55554432011  11111 11111 34445555 899999999 887664322     11122 2335667776 44


Q ss_pred             EEEeCCCcEEEEeCCCCc--eEEeecC----------CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEECCC
Q 005342          560 AFGFDDSSILVHCPCTKK--TKAKLKG----------HQNRITCLAYSLSLNVLVSSGA----------DAQLCVWDAVG  617 (701)
Q Consensus       560 ~~gs~dg~I~iwd~~~~~--~~~~l~~----------h~~~V~~v~~spdg~~l~s~s~----------D~~I~vwd~~~  617 (701)
                      +..+..+.+++.|+.++.  .+..+.-          .......++++||++.++.+..          ++.|.++|..+
T Consensus       228 ~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t  307 (373)
T 2mad_H          228 VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             EEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC
Confidence            444578899999987552  2233221          1123445789999887766543          35899999999


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE--ecCeEEEEECCCCceeeee
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI--HEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg--~Dg~I~iwd~~~g~~~~~l  674 (701)
                      ++.+.     ++..+     ....+++|+|||+ .++++  .++.|.+||..+++.++++
T Consensus       308 ~~vv~-----~i~~g-----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          308 GQTSS-----QISLG-----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CEEEE-----EEECC-----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            75432     23223     4468999999999 66665  4899999999999999884

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.42  E-value=5.2e-11  Score=123.73  Aligned_cols=252  Identities=11%  Similarity=0.041  Sum_probs=165.0

Q ss_pred             CcccccccCccceeEEEe------ecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIK------QIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRP  374 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~------~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~  374 (701)
                      +.|.++|.++++....+.      .......  .+.+..+      ..+++|.+||..+++.+..+          +   
T Consensus        17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~--~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i----------~---   81 (328)
T 3dsm_A           17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQ--SMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRI----------T---   81 (328)
T ss_dssp             BEEEEEETTTTEEECSHHHHHHSSCCBSCEE--EEEEETTEEEEEEGGGTEEEEEETTTCCEEEEE----------E---
T ss_pred             ceEEEEECCCCEEhhhhHhhhcCcccCccce--EEEEECCEEEEEEcCCCEEEEEECcccEEEEEc----------C---
Confidence            577888888877655431      1122344  5666555      55789999999999887762          1   


Q ss_pred             cccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCcee-EeecCC-CCCCCCEEEEEEecC
Q 005342          375 LDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPD-NSFGGRVVRLIYSHS  452 (701)
Q Consensus       375 ~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~-~l~~~~-~~~~~~v~~l~~spd  452 (701)
                                      .......++++|+++..++...++.|.+||..    +++.. .+.... .+.......+++  +
T Consensus        82 ----------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~----t~~~~~~i~~g~~~~~~~~p~~i~~--~  139 (328)
T 3dsm_A           82 ----------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK----TYEITGYIECPDMDMESGSTEQMVQ--Y  139 (328)
T ss_dssp             ----------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETT----TTEEEEEEECTTCCTTTCBCCCEEE--E
T ss_pred             ----------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECC----CCeEEEEEEcCCccccCCCcceEEE--E
Confidence                            11126789999999655555578999999997    55443 222211 001114456666  3


Q ss_pred             CCEEEEEE--CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C---
Q 005342          453 GDFLVALT--QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G---  524 (701)
Q Consensus       453 g~~l~s~s--~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d---  524 (701)
                      +..++++.  .++.|.++|.                     .++++... +..  ......++++  |++++++. +   
T Consensus       140 ~~~lyv~~~~~~~~v~viD~---------------------~t~~~~~~-i~~--g~~p~~i~~~~dG~l~v~~~~~~~~  195 (328)
T 3dsm_A          140 GKYVYVNCWSYQNRILKIDT---------------------ETDKVVDE-LTI--GIQPTSLVMDKYNKMWTITDGGYEG  195 (328)
T ss_dssp             TTEEEEEECTTCCEEEEEET---------------------TTTEEEEE-EEC--SSCBCCCEECTTSEEEEEBCCBCTT
T ss_pred             CCEEEEEcCCCCCEEEEEEC---------------------CCCeEEEE-EEc--CCCccceEEcCCCCEEEEECCCccC
Confidence            44555555  3788888854                     55554432 211  2234567777  65555544 4   


Q ss_pred             -------CeEEEEeCCCCcEEEEecCC-CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe--ecCCCCCeEEEE
Q 005342          525 -------GKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--LKGHQNRITCLA  593 (701)
Q Consensus       525 -------g~I~iwd~~~~~~~~~~~~~-~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~--l~~h~~~V~~v~  593 (701)
                             +.|.++|..+++....+... ......++++|++ .++++..  .|++||..+++....  +..+......++
T Consensus       196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~  273 (328)
T 3dsm_A          196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLT  273 (328)
T ss_dssp             CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEE
T ss_pred             CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEE
Confidence                   68999999999887777533 3367899999999 7666544  899999988876421  222235688999


Q ss_pred             Eec-CCCEEEEE----eCCCeEEEEECCCCeeee
Q 005342          594 YSL-SLNVLVSS----GADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       594 ~sp-dg~~l~s~----s~D~~I~vwd~~~g~~~~  622 (701)
                      ++| ++.+.++.    ..++.|.+||.. |+.+.
T Consensus       274 vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~  306 (328)
T 3dsm_A          274 VNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID  306 (328)
T ss_dssp             ECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred             EcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence            999 56666666    678999999998 75443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=1.3e-11  Score=143.23  Aligned_cols=242  Identities=10%  Similarity=-0.010  Sum_probs=155.7

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCC-----CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT  464 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d-----~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  464 (701)
                      +|.. +..++|||||++||.++.+     ..|++||+.    +++......    +...+..++|+|| +.|+.++.++.
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~----tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~  230 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVA----DGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEP  230 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETT----TCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECC----CCCCCCccC----CCceeccEEEECC-CEEEEEEecCc
Confidence            4444 8899999999999987654     469999998    665544222    1112357889999 99998887654


Q ss_pred             --------------EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CC--
Q 005342          465 --------------HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG--  525 (701)
Q Consensus       465 --------------i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg--  525 (701)
                                    |.+|++.++.                 ....++.. . ..+...+.++.||  |++|+..+ ++  
T Consensus       231 ~~~~~~~~~~~~~~v~~~~lgt~~-----------------~~~~lv~~-~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~  291 (741)
T 1yr2_A          231 KEGQAFQALNYNQTVWLHRLGTPQ-----------------SADQPVFA-T-PELPKRGHGASVSSDGRWVVITSSEGTD  291 (741)
T ss_dssp             --------CCCCCEEEEEETTSCG-----------------GGCEEEEC-C-TTCTTCEEEEEECTTSCEEEEEEECTTC
T ss_pred             ccccccccCCCCCEEEEEECCCCc-----------------hhCEEEec-c-CCCCeEEEEEEECCCCCEEEEEEEccCC
Confidence                          5555442210                 00112211 1 1233457889999  88887766 54  


Q ss_pred             ---eEEEEeCCCC--cEEEEecCCCCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCC--ceEEeecCCCCCeEEEE
Q 005342          526 ---KISIFSLETF--QTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTK--KTKAKLKGHQNRITCLA  593 (701)
Q Consensus       526 ---~I~iwd~~~~--~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d----g~I~iwd~~~~--~~~~~l~~h~~~V~~v~  593 (701)
                         .|++||+.++  +....+..+...+.... +|+| .|+..+.+    +.|++||+.++  .....+.++...+..++
T Consensus       292 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~  370 (741)
T 1yr2_A          292 PVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG  370 (741)
T ss_dssp             SCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE
T ss_pred             CcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE
Confidence               8999999876  31455555555555553 4888 66666653    46999999874  34444455555677788


Q ss_pred             EecCCCEEEEEeCCCeEEEEECC-CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE---E--ecCeEEEEECCC
Q 005342          594 YSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I--HEGQIDVYEAPT  667 (701)
Q Consensus       594 ~spdg~~l~s~s~D~~I~vwd~~-~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s---g--~Dg~I~iwd~~~  667 (701)
                      |+ ++.++++...|+..+||.+. +|..  ...   +.....   +.+..++++|+++.++.   +  ..++|++||+.+
T Consensus       371 ~~-~~~lv~~~~~dg~~~l~~~~~~g~~--~~~---l~~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          371 IA-GNRLFASYIHDAKSQVLAFDLDGKP--AGA---VSLPGI---GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             EE-BTEEEEEEEETTEEEEEEEETTSCE--EEE---CBCSSS---CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             EE-CCEEEEEEEECCEEEEEEEeCCCCc--eee---ccCCCC---eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            87 56678888889987777554 3321  122   222222   67889999999876653   2  467899999988


Q ss_pred             Cce
Q 005342          668 LNH  670 (701)
Q Consensus       668 g~~  670 (701)
                      |+.
T Consensus       442 g~~  444 (741)
T 1yr2_A          442 AKT  444 (741)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            873

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.42  E-value=8.1e-11  Score=122.94  Aligned_cols=273  Identities=11%  Similarity=0.029  Sum_probs=179.9

Q ss_pred             CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc----------C
Q 005342          343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK----------S  412 (701)
Q Consensus       343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s----------~  412 (701)
                      +++|.+.|..+++.+..+          +.                  +.. - .++++|||++++.++          .
T Consensus        58 ~~~V~ViD~~t~~v~~~I----------~v------------------G~~-P-~va~spDG~~lyVan~~~~r~~~G~~  107 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMI----------DG------------------GFL-P-NPVVADDGSFIAHASTVFSRIARGER  107 (386)
T ss_dssp             SEEEEEEETTTTEEEEEE----------EE------------------CSS-C-EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred             CCEEEEEECCCCeEEEEE----------EC------------------CCC-C-cEEECCCCCEEEEEcccccccccCCC
Confidence            578999999988877763          11                  111 2 389999999988775          3


Q ss_pred             CCcEEEEeccccCCCCcee-EeecCCCC---CCCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceee
Q 005342          413 LEKSVNLKLQLINEPSECR-TLLLPDNS---FGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMES  486 (701)
Q Consensus       413 d~~v~iw~~~~~~~~~~~~-~l~~~~~~---~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i  486 (701)
                      ++.|.+||..    +.+.. .+..+...   .......++++|||++++++..  ++.|.++|                 
T Consensus       108 ~~~VsviD~~----t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID-----------------  166 (386)
T 3sjl_D          108 TDYVEVFDPV----TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVD-----------------  166 (386)
T ss_dssp             EEEEEEECTT----TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEE-----------------
T ss_pred             CCEEEEEECC----CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEE-----------------
Confidence            5789999998    44432 23232100   0124567899999999988874  68898885                 


Q ss_pred             EEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC-CcEEEEecCC----CCCe-EEEEEc-CC
Q 005342          487 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-FQTLATFANP----PPIA-TYFILL-PQ  556 (701)
Q Consensus       487 ~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~-~~~~~~~~~~----~~~i-~~l~~s-pd  556 (701)
                          ..+++++.. +.. .  .. ...+.  .+.+++.+ ||++.+.++.+ ++.......+    ..++ ....|. ++
T Consensus       167 ----~~t~~vv~t-I~v-~--g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d  237 (386)
T 3sjl_D          167 ----LEGKAFKRM-LDV-P--DC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA  237 (386)
T ss_dssp             ----TTTTEEEEE-EEC-C--SE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             ----CCCCcEEEE-EEC-C--Cc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC
Confidence                466665543 211 1  11 12233  45566666 99999999976 5543322111    1222 224554 67


Q ss_pred             CeEEEEeCCCcEEEEeCCCCc--eEEeec---------C-CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEE
Q 005342          557 DLFAFGFDDSSILVHCPCTKK--TKAKLK---------G-HQNRITCLAYSLSLNVLVSSGA----------DAQLCVWD  614 (701)
Q Consensus       557 g~l~~gs~dg~I~iwd~~~~~--~~~~l~---------~-h~~~V~~v~~spdg~~l~s~s~----------D~~I~vwd  614 (701)
                      |.++..+.+|.|++.|..++.  .+..+.         + ..+....++++|+++.++....          .++|.+.|
T Consensus       238 G~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD  317 (386)
T 3sjl_D          238 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  317 (386)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence            744446678999999987654  333332         1 1234456788999887766532          25799999


Q ss_pred             CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE--ecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342          615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI--HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg--~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~  685 (701)
                      +++++.+....+.          ..++++.++||++ +|+++  .++.|.++|..+++.+++++.   -+.+.++++
T Consensus       318 ~~t~kv~~~i~vg----------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          318 AKTGERLAKFEMG----------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             TTTCCEEEEEEEE----------EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             CCCCeEEEEEECC----------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            9998755444443          5678999999997 67664  489999999999999999987   677788776

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.39  E-value=2.7e-10  Score=116.93  Aligned_cols=235  Identities=11%  Similarity=0.108  Sum_probs=157.1

Q ss_pred             eEEEEEcCCCCeEEE-------EcCCCcEEEEeccccCCCCceeEeecCC-CCCCCCEEEEEEecC-CCEEEEEECCCcE
Q 005342          395 SRESTSLPDADSAVC-------AKSLEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSHS-GDFLVALTQTATH  465 (701)
Q Consensus       395 V~~l~~spdg~~l~s-------~s~d~~v~iw~~~~~~~~~~~~~l~~~~-~~~~~~v~~l~~spd-g~~l~s~s~dg~i  465 (701)
                      ..+++|+++|+.+++       +..++.|..|+..    +++...+..+. .++...+.+++++++ |+. ..++..+.|
T Consensus        20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l-~v~~~~~~l   94 (314)
T 1pjx_A           20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK----TGKKTVICKPEVNGYGGIPAGCQCDRDANQL-FVADMRLGL   94 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTT----TCCEEEEECCEETTEECCEEEEEECSSSSEE-EEEETTTEE
T ss_pred             ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC----CCcEEEEEecccCCCCCCCceEEEecCCCcE-EEEECCCCE
Confidence            678999999998888       6778899999976    55544433210 113467899999999 664 444544567


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEee-c--ccCCCCCCeEEEEec--CCEEEEEe-C---------------
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-D--IAADPKDSISCFALR--GSHLFSAS-G---------------  524 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~--~~~~~~~~v~~l~~s--~~~l~s~s-d---------------  524 (701)
                      .+||.                     . ++.... .  ........+.+++++  |++.++.. +               
T Consensus        95 ~~~d~---------------------~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~  152 (314)
T 1pjx_A           95 LVVQT---------------------D-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEET---------------------T-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             EEEeC---------------------C-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCC
Confidence            77754                     3 332210 0  001112357789998  66655554 4               


Q ss_pred             CeEEEEeCCCCcEEEEecCCCCCeEEEEEc----CCC-eEEEE-eCCCcEEEEeCC-CCc-----eEEeecCCC-CCeEE
Q 005342          525 GKISIFSLETFQTLATFANPPPIATYFILL----PQD-LFAFG-FDDSSILVHCPC-TKK-----TKAKLKGHQ-NRITC  591 (701)
Q Consensus       525 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s----pdg-~l~~g-s~dg~I~iwd~~-~~~-----~~~~l~~h~-~~V~~  591 (701)
                      +.|..||.. ++...... +......++++    |+| .++++ ..++.|++||.. +++     ....+.++. ..+..
T Consensus       153 ~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  230 (314)
T 1pjx_A          153 GSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             EEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             CeEEEECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence            578888875 55433322 33456889999    999 55544 567899999976 443     233344444 56889


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCC
Q 005342          592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT  667 (701)
Q Consensus       592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~  667 (701)
                      ++++++|++.++...++.|.+||..+++..  ..+.    .+.   ..+.+++|+|+|+.|+++  .++.|..|++..
T Consensus       231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~--~~~~----~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPK--MRIR----CPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCBSCS--EEEE----CSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             eEECCCCCEEEEEcCCCEEEEEcCCCCcEe--EEEe----CCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999999998888888899999999866432  2222    222   668999999999966654  467999999864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.37  E-value=2.5e-10  Score=114.51  Aligned_cols=193  Identities=9%  Similarity=-0.016  Sum_probs=136.7

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      +.+++++|+|+.+++.. ++.|.+|+..    ......+..   .....+.+++++|+|+.+++...++.|.+|+.    
T Consensus        69 p~~i~~~~~g~l~v~~~-~~~i~~~d~~----~~~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~----  136 (270)
T 1rwi_B           69 PQGLAVDGAGTVYVTDF-NNRVVTLAAG----SNNQTVLPF---DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAA----  136 (270)
T ss_dssp             CCCEEECTTCCEEEEET-TTEEEEECTT----CSCCEECCC---CSCSSEEEEEECTTCCEEEEEGGGTEEEEECT----
T ss_pred             cceeEECCCCCEEEEcC-CCEEEEEeCC----CceEeeeec---CCcCCCcceEECCCCCEEEEECCCCEEEEEEC----
Confidence            66799999999777766 8899999986    433332211   12357899999999997666666788988853    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF  551 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l  551 (701)
                                       .+.....  ........+.+++++  |+.+++.. ++.|.+||..+.............+..+
T Consensus       137 -----------------~~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i  197 (270)
T 1rwi_B          137 -----------------GSKTQTV--LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGI  197 (270)
T ss_dssp             -----------------TCCSCEE--CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEE
T ss_pred             -----------------CCceeEe--eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEE
Confidence                             2221111  111223356788888  66555555 6899999987765443333333668999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       552 ~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      +++++| ++++...++.|.+||..+.........+...+.+++++|+|+++++.+.+++|++++....
T Consensus       198 ~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          198 AVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             EECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            999999 7777777889999998765443322234457899999999998888899999999998874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.36  E-value=4.3e-09  Score=106.88  Aligned_cols=230  Identities=10%  Similarity=-0.007  Sum_probs=157.5

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      +..+++.++|+..++...++.|..++..     ++...+..+  .....+.++++.++|+..++...++.|..+|.    
T Consensus        64 ~~~i~~~~~g~l~v~~~~~~~v~~~d~~-----g~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~----  132 (300)
T 2qc5_A           64 VMCLIVSSLGDIWFTENGANKIGKLSKK-----GGFTEYPLP--QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTA----  132 (300)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-----SCEEEEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT----
T ss_pred             ceeEEECCCCCEEEEecCCCeEEEECCC-----CCeEEecCC--CCCCCCccceECCCCCEEEEccCCCeEEEECC----
Confidence            7889999999988888778889999874     333333322  23467899999999987776666788888854    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE-ecCCCCCeEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATY  550 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~  550 (701)
                                       . +......+ ......+.+++++  |+..++.. ++.|..+|. +++.... .......+..
T Consensus       133 -----------------~-g~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~  192 (300)
T 2qc5_A          133 -----------------D-GTIYEYDL-PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVG  192 (300)
T ss_dssp             -----------------T-SCEEEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             -----------------C-CCEEEccC-CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcce
Confidence                             3 33222112 1234567889998  66555555 689999998 5554432 2233456889


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      ++++++| +.++....+.|.+||. +++.... +..+...+.+++++++|++.++...++.|..||. ++...   .+. 
T Consensus       193 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~-  266 (300)
T 2qc5_A          193 ITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ---EYQ-  266 (300)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE---EEE-
T ss_pred             EEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE---EEE-
Confidence            9999999 6666666778999998 5554332 3334567899999999997777767799999998 44321   222 


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP  666 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~  666 (701)
                      +..+.    ..+.+++++++|++.+++.. .|..+|..
T Consensus       267 ~~~~~----~~~~~i~~~~~g~l~v~~~~-~i~~~~p~  299 (300)
T 2qc5_A          267 LQTEN----AEPHGITFGKDGSVWFALKC-KIGKLNLN  299 (300)
T ss_dssp             CCSTT----CCCCCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred             CCccC----CccceeEeCCCCCEEEEccC-ceEEeCCC
Confidence            22222    56789999999987666554 77777653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.33  E-value=1.1e-10  Score=118.02  Aligned_cols=187  Identities=14%  Similarity=0.016  Sum_probs=141.5

Q ss_pred             CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCC-CCeEEEEec--CCEEEEEeCCeEE
Q 005342          452 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSASGGKIS  528 (701)
Q Consensus       452 dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~v~~l~~s--~~~l~s~sdg~I~  528 (701)
                      .++.|++++.|+.|.+|                     |.++|+.+-. +. .+. ..+.+++++  |++++ +.++.|.
T Consensus         4 ~~~~lv~~~~~~~v~~~---------------------d~~tG~~~w~-~~-~~~~~~~~~~~~~pdG~ilv-s~~~~V~   59 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAII---------------------NKDTKEIVWE-YP-LEKGWECNSVAATKAGEILF-SYSKGAK   59 (276)
T ss_dssp             CCEEEEECTTCSEEEEE---------------------ETTTTEEEEE-EE-CCTTCCCCEEEECTTSCEEE-ECBSEEE
T ss_pred             CCcEEEeeCCCCEEEEE---------------------ECCCCeEEEE-eC-CCccCCCcCeEECCCCCEEE-eCCCCEE
Confidence            45678888889999999                     4466665432 22 222 357788887  77777 4478899


Q ss_pred             EEeCCCCcEEEEecCC-CCCeEEEEEcCCC-eEEEEeC-CCcEEEEeCCCCceEEeec------CCCCCeEEEEEecCCC
Q 005342          529 IFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLK------GHQNRITCLAYSLSLN  599 (701)
Q Consensus       529 iwd~~~~~~~~~~~~~-~~~i~~l~~spdg-~l~~gs~-dg~I~iwd~~~~~~~~~l~------~h~~~V~~v~~spdg~  599 (701)
                      .||. +++.+..+..+ ...+.++.+.|+| .+++.+. ++.|..+|. +++.+..+.      ++......+++.++|+
T Consensus        60 ~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~  137 (276)
T 3no2_A           60 MITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN  137 (276)
T ss_dssp             EECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC
T ss_pred             EECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC
Confidence            9999 89999999865 3578899999999 8888777 788988885 777776654      2223455678899999


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342          600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       600 ~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      ++++.+.++.|..||.. |+.+..  +.   .+     ....++...++|+.++++ .++.|..+|..+|+.+.++.
T Consensus       138 ~lv~~~~~~~v~~~d~~-G~~~w~--~~---~~-----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          138 YLVPLFATSEVREIAPN-GQLLNS--VK---LS-----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEE--EE---CS-----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEEEecCCCEEEEECCC-CCEEEE--EE---CC-----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            99999999999999998 764432  22   11     345567889999999886 56689999999999988875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.32  E-value=8.2e-09  Score=104.77  Aligned_cols=249  Identities=12%  Similarity=0.032  Sum_probs=170.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      +.++++.++|+..++...++.|..|+..     ++...+..+  .....+.+++++++|+..++...++.|..||.    
T Consensus        22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----~~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~----   90 (300)
T 2qc5_A           22 PYGITSSEDGKVWFTQHKANKISSLDQS-----GRIKEFEVP--TPDAKVMCLIVSSLGDIWFTENGANKIGKLSK----   90 (300)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-----SCEEEEECS--STTCCEEEEEECTTSCEEEEETTTTEEEEECT----
T ss_pred             cceeeECCCCCEEEEcCCCCeEEEECCC-----CceEEEECC--CCCCcceeEEECCCCCEEEEecCCCeEEEECC----
Confidence            7899999999988888888999999874     233333322  23467899999999987666655788888854    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE-EecCCCCCeEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA-TFANPPPIATY  550 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~-~~~~~~~~i~~  550 (701)
                                       . +....... ......+.+++++  |.+.++.. ++.|..+|.. ++... .+......+..
T Consensus        91 -----------------~-g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~  150 (300)
T 2qc5_A           91 -----------------K-GGFTEYPL-PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF  150 (300)
T ss_dssp             -----------------T-SCEEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred             -----------------C-CCeEEecC-CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence                             3 33221111 1233568889998  66666655 7899999987 65442 23333556899


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      ++++++| +.++...++.|..+|. +++.... ...+...+..++++++|++.++....+.|.+||. +++..   ... 
T Consensus       151 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~-  224 (300)
T 2qc5_A          151 ITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS---EYD-  224 (300)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEE-
T ss_pred             EEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE---EEE-
Confidence            9999999 7676666889999998 5554432 2234457899999999988777777789999998 44322   121 


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeee-eee----eeEEEEEee
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ-VLL----ISHIMFVQI  685 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~-l~~----i~~~~fs~~  685 (701)
                      +..+ .   ..+.+++++++|++.++. .++.|..||. +++.... ++.    +.++++++.
T Consensus       225 ~~~~-~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  282 (300)
T 2qc5_A          225 IPTP-N---ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKD  282 (300)
T ss_dssp             CSST-T---CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTT
T ss_pred             CCCC-C---CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCC
Confidence            2222 2   668899999999966665 5789999998 5554321 221    666666654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.30  E-value=1.7e-10  Score=132.67  Aligned_cols=240  Identities=7%  Similarity=0.008  Sum_probs=155.3

Q ss_pred             CCCc-eEEEEEcCCCCeEEEE-----cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342          391 DNNQ-SRESTSLPDADSAVCA-----KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT  464 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~-----s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  464 (701)
                      +|.. +..++|||||++||.+     +....|++||+.    +++.....+    +......++|+ ||+.|+.++.+..
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~----tg~~~~~~~----~~~k~~~~~Ws-Dg~~l~y~~~~~~  196 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE----SKQPLETPL----KDVKFSGISWL-GNEGFFYSSYDKP  196 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT----TCSEEEEEE----EEEESCCCEEE-TTTEEEEEESSCC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC----CCCCCcccc----CCceeccEEEe-CCCEEEEEEecCc
Confidence            4445 8899999999999853     333679999998    666544322    11113567899 9999999888743


Q ss_pred             -------------EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCC-CCCCeEEEEec--CCEEEEEe--C--
Q 005342          465 -------------HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD-PKDSISCFALR--GSHLFSAS--G--  524 (701)
Q Consensus       465 -------------i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~v~~l~~s--~~~l~s~s--d--  524 (701)
                                   |++|++.+..                 ....++.. . .. +.....++.++  |++|+...  +  
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~-----------------~~~~~v~~-~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  257 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQ-----------------EDDRLVFG-A-IPAQHHRYVGATVTEDDRFLLISAANSTS  257 (693)
T ss_dssp             C-------CCCCEEEEEETTSCG-----------------GGCEEEES-C-SGGGCCSEEEEEECTTSCEEEEEEESSSS
T ss_pred             ccccccccCCCcEEEEEECCCCc-----------------ccceEEEe-c-CCCCCeEEEEEEEcCCCCEEEEEEccCCC
Confidence                         6666553211                 11123321 1 12 34456788898  77765443  2  


Q ss_pred             -CeEEEEeCCCCc-EEEEecCCCCCeEEEEEcCCC--eEEEEeCC---CcEEEEeCCCCce--EEeecCCCCCeEEEEEe
Q 005342          525 -GKISIFSLETFQ-TLATFANPPPIATYFILLPQD--LFAFGFDD---SSILVHCPCTKKT--KAKLKGHQNRITCLAYS  595 (701)
Q Consensus       525 -g~I~iwd~~~~~-~~~~~~~~~~~i~~l~~spdg--~l~~gs~d---g~I~iwd~~~~~~--~~~l~~h~~~V~~v~~s  595 (701)
                       +.|+++|+.++. ....+..+....... ++++|  +++....+   +.|..+|+.++..  .+.+..|...+.  .|+
T Consensus       258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s  334 (693)
T 3iuj_A          258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVH  334 (693)
T ss_dssp             CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEE
T ss_pred             CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEE
Confidence             589999998764 445555565555555 66666  44444443   5899999987654  345556666655  899


Q ss_pred             cCCCEEEEEeCCC---eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec----CeEEEEECCC
Q 005342          596 LSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYEAPT  667 (701)
Q Consensus       596 pdg~~l~s~s~D~---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D----g~I~iwd~~~  667 (701)
                      |++++|+....++   .|++||+.++..   ..+. +  ...   +.+..+.++|+++.++.+ .+    ++++.||+.+
T Consensus       335 ~~g~~lv~~~~~~g~~~l~~~d~~g~~~---~~l~-~--p~~---~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          335 SGSGYLFAEYMVDATARVEQFDYEGKRV---REVA-L--PGL---GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             EETTEEEEEEEETTEEEEEEECTTSCEE---EEEC-C--SSS---SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred             EECCEEEEEEEECCeeEEEEEECCCCee---EEee-c--CCC---ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence            9999887665543   799999986531   2222 2  222   567788889998877653 33    7899999988


Q ss_pred             Cce
Q 005342          668 LNH  670 (701)
Q Consensus       668 g~~  670 (701)
                      ++.
T Consensus       406 g~~  408 (693)
T 3iuj_A          406 GAI  408 (693)
T ss_dssp             CCE
T ss_pred             CeE
Confidence            764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.30  E-value=1.2e-09  Score=117.01  Aligned_cols=236  Identities=10%  Similarity=0.027  Sum_probs=156.5

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC--cEEEEecCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA--THKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~i~vwd~~~  472 (701)
                      .+.++|+|+|+++++...++.|+.||..    ++.+..+...    ..... ++|+|+++.++++..++  .|.+++.. 
T Consensus       133 P~~la~d~~g~lyv~d~~~~~I~~id~~----~g~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~-  202 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQRDDPRVRLISVD----DNKVTTVHPG----FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA-  202 (409)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEETT----TTEEEEEEET----CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG-
T ss_pred             ceEEEEeCCCCEEEEecCCCcEEEEECC----CCEEEEeecc----CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC-
Confidence            7899999999988888888999999997    5655554321    12223 89999999988888866  67666542 


Q ss_pred             CCccccccccceeeEEeeCCCCeEEee--cccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE----ecC
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTN--DIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT----FAN  543 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~----~~~  543 (701)
                                          ++.....  .+.......+.+++++  +..|+.+. ++.|+.||..++.....    ..+
T Consensus       203 --------------------~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g  262 (409)
T 3hrp_A          203 --------------------SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG  262 (409)
T ss_dssp             --------------------GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS
T ss_pred             --------------------CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC
Confidence                                2211100  0111133456778888  55666666 78999999987753322    222


Q ss_pred             CCCCe-E-EEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEEeecCCC---------------CCeEEEEEecCCCEEEEE
Q 005342          544 PPPIA-T-YFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ---------------NRITCLAYSLSLNVLVSS  604 (701)
Q Consensus       544 ~~~~i-~-~l~~spd-g-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~---------------~~V~~v~~spdg~~l~s~  604 (701)
                      ..... . .++++|+ + ++++...++.|+.|+....  +..+.++.               .....++++|+|+++++-
T Consensus       263 ~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad  340 (409)
T 3hrp_A          263 SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD  340 (409)
T ss_dssp             CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred             CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence            22222 3 9999995 5 6677777889999997643  33333332               347899999999988888


Q ss_pred             e-CCCeEEEEECCCCeeeeeeeeeec--cCCCC------CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          605 G-ADAQLCVWDAVGWKKLCSKFLHSF--QTGLV------PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       605 s-~D~~I~vwd~~~g~~~~~~~l~~~--~~~~~------~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      + .+++|+.|++.+|...   .+...  ..+..      ..-.....++++|+|.++++- .++.|+.+++
T Consensus       341 ~~~~~~I~~~~~~~G~v~---~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          341 GFKGYCLRKLDILDGYVS---TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTTTCEEEEEETTTTEEE---EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCCEEEEEECCCCEEE---EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            8 8999999998887532   12100  00000      001457899999998777764 6778887765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.30  E-value=1.9e-09  Score=110.16  Aligned_cols=210  Identities=12%  Similarity=0.097  Sum_probs=139.2

Q ss_pred             CCEEEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE
Q 005342          442 GRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  518 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~  518 (701)
                      .-..+..|+|++..++... .++.|..||.                     .++....  +  .....+.+++++  |+ 
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~---------------------~~~~~~~--~--~~~~~~~~i~~~~dG~-   66 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDS---------------------FTKQVQR--V--TMDAPVSSVALRQSGG-   66 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEET---------------------TTCCEEE--E--ECSSCEEEEEEBTTSS-
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEEC---------------------CCCcEEE--E--eCCCceEEEEECCCCC-
Confidence            3456788999766555544 4788888854                     4444322  1  134578899998  66 


Q ss_pred             EEEEeCCeEEEEeCCCCcEEEEecCC----CCCeEEEEEcCCC-eEEEEeC-----------CCcEEEEeCCCCceEEee
Q 005342          519 LFSASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFD-----------DSSILVHCPCTKKTKAKL  582 (701)
Q Consensus       519 l~s~sdg~I~iwd~~~~~~~~~~~~~----~~~i~~l~~spdg-~l~~gs~-----------dg~I~iwd~~~~~~~~~l  582 (701)
                      ++++.++.|.+||..+++........    ...+..++++|+| ++++...           .+.|+.+|.. ++... +
T Consensus        67 l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~  144 (297)
T 3g4e_A           67 YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-Y  144 (297)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-E
T ss_pred             EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-E
Confidence            55556778999999887654332211    2346889999999 5554322           2355555543 43333 3


Q ss_pred             cCCCCCeEEEEEecCCCEE-EEEeCCCeEEEEEC--CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC
Q 005342          583 KGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG  658 (701)
Q Consensus       583 ~~h~~~V~~v~~spdg~~l-~s~s~D~~I~vwd~--~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg  658 (701)
                      ..+....+.++|+||++.| ++.+.++.|.+||+  .+|.......+..+..+.    .....+++.++|++.++. .++
T Consensus       145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~----~~p~g~~~d~~G~lwva~~~~~  220 (297)
T 3g4e_A          145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE----QIPDGMCIDAEGKLWVACYNGG  220 (297)
T ss_dssp             EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG----CEEEEEEEBTTSCEEEEEETTT
T ss_pred             eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC----CCCCeeEECCCCCEEEEEcCCC
Confidence            3344457899999999866 45566889999997  566533223333222211    557899999999877775 567


Q ss_pred             eEEEEECCCCceeeeeee----eeEEEEE
Q 005342          659 QIDVYEAPTLNHTSQVLL----ISHIMFV  683 (701)
Q Consensus       659 ~I~iwd~~~g~~~~~l~~----i~~~~fs  683 (701)
                      .|..||..+|+.+..+..    +++++|+
T Consensus       221 ~v~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          221 RVIRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             EEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             EEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence            899999999999888765    8889987

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.25  E-value=5.1e-10  Score=129.77  Aligned_cols=229  Identities=13%  Similarity=0.009  Sum_probs=147.6

Q ss_pred             ceeeeEEEEccC----------CCC--CeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-e
Q 005342          329 WWVPYCINVMPN----------ANN--ETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-S  395 (701)
Q Consensus       329 ~v~~~~l~fspd----------s~d--~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V  395 (701)
                      .+.  .++||||          +.+  .+|++||+.+|+.+...         +                     +.. +
T Consensus       164 ~~~--~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~---------~---------------------~~~~~  211 (741)
T 1yr2_A          164 ALD--AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE---------L---------------------KWVKF  211 (741)
T ss_dssp             EEE--EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE---------E---------------------EEEES
T ss_pred             EEE--eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc---------C---------------------CCcee
Confidence            455  8899999          122  57999999998765431         0                     011 2


Q ss_pred             EEEEEcCCCCeEEEEcCCCc--------------EEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342          396 RESTSLPDADSAVCAKSLEK--------------SVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALT  460 (701)
Q Consensus       396 ~~l~~spdg~~l~s~s~d~~--------------v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s  460 (701)
                      ..++|+|| +.|+.++.++.              |++|++.    ++.. ..+......+...+..+.|||||++|+..+
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lg----t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~  286 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLG----TPQSADQPVFATPELPKRGHGASVSSDGRWVVITS  286 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETT----SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECC----CCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE
Confidence            46889999 99988876654              8889886    3321 111122223334688999999999998887


Q ss_pred             CCC-----cEEEEecCCCCccccccccceeeEEeeCCCC--e-EEeecccCCCCCCeEEEEec-CCEEEEEe-C----Ce
Q 005342          461 QTA-----THKLWKWQSNKQSLEEENVNMESQLYQPSSK--L-VMTNDIAADPKDSISCFALR-GSHLFSAS-G----GK  526 (701)
Q Consensus       461 ~dg-----~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~--~-~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-d----g~  526 (701)
                      .++     .+.+||+                     .++  . ...  +. .+...+....+. |+.|+..+ +    +.
T Consensus       287 ~~~~~~~~~l~~~d~---------------------~~~~~~~~~~--l~-~~~~~~~~~~~~dg~~l~~~s~~~~~~~~  342 (741)
T 1yr2_A          287 SEGTDPVNTVHVARV---------------------TNGKIGPVTA--LI-PDLKAQWDFVDGVGDQLWFVSGDGAPLKK  342 (741)
T ss_dssp             ECTTCSCCEEEEEEE---------------------ETTEECCCEE--EE-CSSSSCEEEEEEETTEEEEEECTTCTTCE
T ss_pred             EccCCCcceEEEEEC---------------------CCCCCcccEE--ec-CCCCceEEEEeccCCEEEEEECCCCCCCE
Confidence            644     6777765                     333  2 111  21 222333344335 77777665 2    46


Q ss_pred             EEEEeCCCC--cEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-CCceEEeecC-CCCCeEEEEEecCCCEE
Q 005342          527 ISIFSLETF--QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-TKKTKAKLKG-HQNRITCLAYSLSLNVL  601 (701)
Q Consensus       527 I~iwd~~~~--~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~-~~~~~~~l~~-h~~~V~~v~~spdg~~l  601 (701)
                      |.+||+.++  .....+..+...+..++++ ++ ++++...|+..++|.+. ++...+.+.. +.+.+..+.++|+++.+
T Consensus       343 l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l  421 (741)
T 1yr2_A          343 IVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHA  421 (741)
T ss_dssp             EEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCE
T ss_pred             EEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEE
Confidence            999999875  3344444445556677887 45 88888889876666443 4556666664 35678899999998755


Q ss_pred             E-EEe---CCCeEEEEECCCCe
Q 005342          602 V-SSG---ADAQLCVWDAVGWK  619 (701)
Q Consensus       602 ~-s~s---~D~~I~vwd~~~g~  619 (701)
                      + +.+   ..++|++||+.+++
T Consensus       422 ~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          422 YLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEcCCCCCCEEEEEECCCCc
Confidence            5 222   35789999999886

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.24  E-value=4.4e-09  Score=107.39  Aligned_cols=217  Identities=9%  Similarity=0.035  Sum_probs=141.5

Q ss_pred             eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          395 SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       395 V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                      -.+..|+|+ +..+++...++.|..|+..    ++....+.     ....+.+++++|+|++++ +. ++.|.+||.   
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~----~~~~~~~~-----~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~---   80 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSF----TKQVQRVT-----MDAPVSSVALRQSGGYVA-TI-GTKFCALNW---   80 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT----TCCEEEEE-----CSSCEEEEEEBTTSSEEE-EE-TTEEEEEET---
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECC----CCcEEEEe-----CCCceEEEEECCCCCEEE-EE-CCeEEEEEC---
Confidence            457899995 4566677778999999987    55443333     246799999999999544 44 567777754   


Q ss_pred             CccccccccceeeEEeeCCCCeEEee-cccC-CCCCCeEEEEec--CCEEEEEe-C-----------CeEEEEeCCCCcE
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTN-DIAA-DPKDSISCFALR--GSHLFSAS-G-----------GKISIFSLETFQT  537 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~-~~~~~v~~l~~s--~~~l~s~s-d-----------g~I~iwd~~~~~~  537 (701)
                                        .++++... .... .....+.+++++  |++.++.. +           +.|..+|.. ++.
T Consensus        81 ------------------~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~  141 (297)
T 3g4e_A           81 ------------------KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV  141 (297)
T ss_dssp             ------------------TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE
T ss_pred             ------------------CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE
Confidence                              44442210 0100 122357788888  66555432 2           245555542 333


Q ss_pred             EEEecCCCCCeEEEEEcCCC-e-EEEEeCCCcEEEEeC--CCCce-----EEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 005342          538 LATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCP--CTKKT-----KAKLKGHQNRITCLAYSLSLNVLVSSGADA  608 (701)
Q Consensus       538 ~~~~~~~~~~i~~l~~spdg-~-l~~gs~dg~I~iwd~--~~~~~-----~~~l~~h~~~V~~v~~spdg~~l~s~s~D~  608 (701)
                      .. +.........++|+||+ . +++.+.++.|.+||+  .++..     ...+..+.+.+..++++++|++.++...++
T Consensus       142 ~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~  220 (297)
T 3g4e_A          142 KK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG  220 (297)
T ss_dssp             EE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT
T ss_pred             EE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC
Confidence            32 22233456889999999 4 466677889999987  45543     223333445678999999999888888889


Q ss_pred             eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc-CCCCEEEE
Q 005342          609 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-PDQIHLLS  654 (701)
Q Consensus       609 ~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s-pdg~~l~s  654 (701)
                      .|.+||..+|+...  .+.    .+.   ..+++++|. ||++.|++
T Consensus       221 ~v~~~d~~tG~~~~--~i~----~p~---~~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          221 RVIRLDPVTGKRLQ--TVK----LPV---DKTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             EEEEECTTTCCEEE--EEE----CSS---SBEEEEEEESGGGCEEEE
T ss_pred             EEEEEcCCCceEEE--EEE----CCC---CCceEEEEeCCCCCEEEE
Confidence            99999999876432  222    111   568999998 89877665

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.24  E-value=2.7e-10  Score=119.51  Aligned_cols=188  Identities=12%  Similarity=0.007  Sum_probs=133.4

Q ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEE
Q 005342          442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS  521 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s  521 (701)
                      ..+..+++++....+++|+.++ +.+|+........  .....     +.... ..   .  .+.. |+.++|++++|++
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~--~~~~~-----~~~~~-~~---~--~lp~-V~~l~fd~~~L~v  102 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHI--TSDST-----PLTFK-WE---K--EIPD-VIFVCFHGDQVLV  102 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHH--HSSSC-----CCCCS-EE---E--ECTT-EEEEEEETTEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhh--ccccc-----cccce-EE---e--eCCC-eeEEEECCCEEEE
Confidence            4689999999999999999875 5559763221000  00000     00100 11   1  2445 9999998888888


Q ss_pred             EeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEE
Q 005342          522 ASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL  601 (701)
Q Consensus       522 ~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l  601 (701)
                      +.++.|++||+.+.........+...+.++.+.+. .+++++.||.|.+||+.++....    +...|++++|||+|  +
T Consensus       103 ~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~  175 (388)
T 1xip_A          103 STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--L  175 (388)
T ss_dssp             EESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--E
T ss_pred             EcCCcEEEEEchhhhccCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--e
Confidence            88899999999877665556666777887776654 48888999999999999887654    44679999999999  6


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeee---eccC--CCCCCCCCeEEEEEcCCCCEEEE
Q 005342          602 VSSGADAQLCVWDAVGWKKLCSKFLH---SFQT--GLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       602 ~s~s~D~~I~vwd~~~g~~~~~~~l~---~~~~--~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      +.|..||++++|+...++......+.   .+..  +|.   ..|.+|.|.+++.++++
T Consensus       176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~---~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE---YSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred             EEEEcCCcEEEEcCCCccccccceecCCcccccccCCC---eeEEEEEEecCCeEEEE
Confidence            78999999999999887521112221   0111  233   88999999999999987

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.24  E-value=7.7e-10  Score=117.63  Aligned_cols=262  Identities=11%  Similarity=0.032  Sum_probs=170.4

Q ss_pred             CeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc----------CC
Q 005342          344 ETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK----------SL  413 (701)
Q Consensus       344 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s----------~d  413 (701)
                      ++|.+.|..+++.+..+          +.                  +.. - .++++|||++++.+.          .+
T Consensus        99 ~~VsVID~~t~~vv~~I----------~v------------------G~~-P-gia~SpDgk~lyVan~~~~~~~~G~~~  148 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMT----------DG------------------GFL-P-HPVAAEDGSFFAQASTVFERIARGKRT  148 (426)
T ss_dssp             EEEEEEETTTTEEEEEE----------EE------------------CSS-C-EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CeEEEEECCCCEEEEEE----------EC------------------CCC-C-ceEECCCCCEEEEEeccccccccCCCC
Confidence            78999999998887763          10                  111 2 589999999988876          36


Q ss_pred             CcEEEEeccccCCCCcee-EeecCCCC---CCCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceeeE
Q 005342          414 EKSVNLKLQLINEPSECR-TLLLPDNS---FGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQ  487 (701)
Q Consensus       414 ~~v~iw~~~~~~~~~~~~-~l~~~~~~---~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~  487 (701)
                      +.|.++|..    +.+.. .+.++...   .......+.++|||++++++..  ++.|.+.                   
T Consensus       149 ~~VsviD~~----t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVI-------------------  205 (426)
T 3c75_H          149 DYVEVFDPV----TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVV-------------------  205 (426)
T ss_dssp             EEEEEECTT----TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEE-------------------
T ss_pred             CEEEEEECC----CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEE-------------------
Confidence            789999998    44432 33332000   0123457899999999998874  5778888                   


Q ss_pred             EeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEE----ecCCCCCe-EEEEEcCCC-eE
Q 005342          488 LYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLAT----FANPPPIA-TYFILLPQD-LF  559 (701)
Q Consensus       488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~----~~~~~~~i-~~l~~spdg-~l  559 (701)
                        |..+++++.. +.-+   ....+.-. ...+++.+ ||.+.+.+..+++....    +.....++ ..+.+++++ .+
T Consensus       206 --D~~t~kvv~~-I~v~---g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~  279 (426)
T 3c75_H          206 --DLEGKTFDRM-LDVP---DCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL  279 (426)
T ss_dssp             --ETTTTEEEEE-EECC---SEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred             --ECCCCeEEEE-EEcC---CceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence              4466665533 2211   11112222 44555555 88888888866655432    22112222 345789998 66


Q ss_pred             EEEeCCCcEEEEeCCCCceE--EeecC----------CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEECCC
Q 005342          560 AFGFDDSSILVHCPCTKKTK--AKLKG----------HQNRITCLAYSLSLNVLVSSGA----------DAQLCVWDAVG  617 (701)
Q Consensus       560 ~~gs~dg~I~iwd~~~~~~~--~~l~~----------h~~~V~~v~~spdg~~l~s~s~----------D~~I~vwd~~~  617 (701)
                      +..+..+.+++.|..+....  ..+.-          .......++++|+++.++....          ++.|.+.|..+
T Consensus       280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T  359 (426)
T 3c75_H          280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET  359 (426)
T ss_dssp             EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence            66677899999998655421  11110          0112234689999886665432          35799999999


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE--ecCeEEEEECCCCceeeee
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI--HEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg--~Dg~I~iwd~~~g~~~~~l  674 (701)
                      ++.+....+.          ....++.|+|||+ ++++.  .++.|.++|..+++.++++
T Consensus       360 ~kvv~~I~vg----------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          360 GERINKIELG----------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CCEEEEEEEE----------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CeEEEEEECC----------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            8655433333          4578999999999 88875  4899999999999999997

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.20  E-value=4.3e-09  Score=107.89  Aligned_cols=225  Identities=8%  Similarity=-0.051  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          395 SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       395 V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                      ...+.|+|+|+ +++++..++.|..|+..     +....+..    +...+..++++++|+.+++...++.|.+|+.+  
T Consensus        47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----g~~~~~~~----~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--  115 (305)
T 3dr2_A           47 SEGPAWWEAQRTLVWSDLVGRRVLGWRED-----GTVDVLLD----ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--  115 (305)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETT-----SCEEEEEE----SCSCEEEEEECTTSCEEEEETTTTEEEEECTT--
T ss_pred             ccCCeEeCCCCEEEEEECCCCEEEEEeCC-----CCEEEEeC----CCCccceeeECCCCCEEEEECCCCEEEEECCC--
Confidence            77899999998 66777788999999873     33333332    35678999999999965554456788888642  


Q ss_pred             CccccccccceeeEEeeCCCCeEEe--ecccCCCCCCeEEEEec--CCEEEE----Ee--------------CCeEEEEe
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMT--NDIAADPKDSISCFALR--GSHLFS----AS--------------GGKISIFS  531 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~v~~l~~s--~~~l~s----~s--------------dg~I~iwd  531 (701)
                                          +....  ..........+.+++++  |++.++    |.              .+.|..||
T Consensus       116 --------------------g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d  175 (305)
T 3dr2_A          116 --------------------GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP  175 (305)
T ss_dssp             --------------------SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred             --------------------CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence                                22110  00000112345678888  666664    32              25688888


Q ss_pred             CCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC------CcEEEEeCCCCceE--Eee-cCCCCCeEEEEEecCCCEE
Q 005342          532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDD------SSILVHCPCTKKTK--AKL-KGHQNRITCLAYSLSLNVL  601 (701)
Q Consensus       532 ~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d------g~I~iwd~~~~~~~--~~l-~~h~~~V~~v~~spdg~~l  601 (701)
                      ..+++.....  .......++|+||+ .++++...      +.|++||+..+...  ..+ ....+....++++++|++.
T Consensus       176 ~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw  253 (305)
T 3dr2_A          176 PDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW  253 (305)
T ss_dssp             SSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE
T ss_pred             CCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE
Confidence            8766644332  33456789999999 67666554      78999998754311  111 1123445678999999955


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342          602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  665 (701)
Q Consensus       602 ~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~  665 (701)
                      ++ +.+ .|.+|+.. |+..  ..+.    ..    ..+.+++|+|+++.|..+..+.+..+++
T Consensus       254 v~-~~~-gv~~~~~~-g~~~--~~~~----~~----~~~~~~~f~~d~~~L~it~~~~l~~~~~  304 (305)
T 3dr2_A          254 SS-SGT-GVCVFDSD-GQLL--GHIP----TP----GTASNCTFDQAQQRLFITGGPCLWMLPL  304 (305)
T ss_dssp             EC-CSS-EEEEECTT-SCEE--EEEE----CS----SCCCEEEECTTSCEEEEEETTEEEEEEC
T ss_pred             Ee-cCC-cEEEECCC-CCEE--EEEE----CC----CceeEEEEeCCCCEEEEEcCCeEEEEEC
Confidence            44 344 59999985 4322  2222    11    3478899999998888876566655543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.18  E-value=1.9e-08  Score=104.08  Aligned_cols=216  Identities=12%  Similarity=0.014  Sum_probs=139.2

Q ss_pred             eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          395 SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       395 V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                      ...+.|+|++ ..++++..++.|..|+..    +++...+..     ...+.+++++|+|+++++ +.+ .+.+||.   
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~----~~~~~~~~~-----~~~v~~i~~~~dg~l~v~-~~~-gl~~~d~---  116 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLA----SGRKTVHAL-----PFMGSALAKISDSKQLIA-SDD-GLFLRDT---  116 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETT----TTEEEEEEC-----SSCEEEEEEEETTEEEEE-ETT-EEEEEET---
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECC----CCcEEEEEC-----CCcceEEEEeCCCeEEEE-ECC-CEEEEEC---
Confidence            4578899974 566677778899999987    555444332     357999999999987665 444 4777754   


Q ss_pred             CccccccccceeeEEeeCCCCeEEee-cccC-CCCCCeEEEEec--CCEEEEEeC-------CeEEEEeCCCCcEEEEec
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTN-DIAA-DPKDSISCFALR--GSHLFSASG-------GKISIFSLETFQTLATFA  542 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~-~~~~~v~~l~~s--~~~l~s~sd-------g~I~iwd~~~~~~~~~~~  542 (701)
                                        .++++... .... .....+.+++++  |++.++..+       +.|..+|  +++... +.
T Consensus       117 ------------------~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~  175 (326)
T 2ghs_A          117 ------------------ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LF  175 (326)
T ss_dssp             ------------------TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EE
T ss_pred             ------------------CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-ee
Confidence                              44442211 0100 112357888898  665554432       4666677  454332 22


Q ss_pred             CCCCCeEEEEEcCCC-eE-EEEeCCCcEEEEeCC--CC-ce-----EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342          543 NPPPIATYFILLPQD-LF-AFGFDDSSILVHCPC--TK-KT-----KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV  612 (701)
Q Consensus       543 ~~~~~i~~l~~spdg-~l-~~gs~dg~I~iwd~~--~~-~~-----~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v  612 (701)
                      ........++|+||| .+ ++.+.++.|++||+.  ++ ..     ...+......+..++++++|++.++...++.|.+
T Consensus       176 ~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~  255 (326)
T 2ghs_A          176 ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDR  255 (326)
T ss_dssp             EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred             CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence            233356789999999 55 445567899999986  55 32     2233334456788999999998887777789999


Q ss_pred             EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc-CCCCEEEEE
Q 005342          613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-PDQIHLLSI  655 (701)
Q Consensus       613 wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s-pdg~~l~sg  655 (701)
                      ||. +++..  ..+.    .+.   ..+++++|+ |+++.|+++
T Consensus       256 ~d~-~g~~~--~~i~----~~~---~~~~~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          256 YDT-DGNHI--ARYE----VPG---KQTTCPAFIGPDASRLLVT  289 (326)
T ss_dssp             ECT-TCCEE--EEEE----CSC---SBEEEEEEESTTSCEEEEE
T ss_pred             ECC-CCCEE--EEEE----CCC---CCcEEEEEecCCCCEEEEE
Confidence            998 44422  2222    121   568999998 898777653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.18  E-value=3.6e-08  Score=103.89  Aligned_cols=249  Identities=10%  Similarity=-0.008  Sum_probs=161.1

Q ss_pred             EEcCCCCeEEEEcC--CC---cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC----------CC
Q 005342          399 TSLPDADSAVCAKS--LE---KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TA  463 (701)
Q Consensus       399 ~~spdg~~l~s~s~--d~---~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~----------dg  463 (701)
                      ...|++++++.+..  ..   .|.++|..    +++... .++..  ..+  .+++||||++++++..          ++
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~----t~~~~~-~i~~g--~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~   97 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAG----SGSILG-HVNGG--FLP--NPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECC----CCeEEE-EecCC--CCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence            34578887777654  23   78999987    554332 22221  222  8999999999988862          56


Q ss_pred             cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCC------CCCCeEEEEec--CCEEEEEe---CCeEEEEeC
Q 005342          464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD------PKDSISCFALR--GSHLFSAS---GGKISIFSL  532 (701)
Q Consensus       464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~v~~l~~s--~~~l~s~s---dg~I~iwd~  532 (701)
                      .|.+||.                     .+.+.+.. +..+      +......++++  |+++++++   ++.|.++| 
T Consensus        98 ~v~viD~---------------------~t~~~~~~-i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-  154 (373)
T 2mad_H           98 YVEVFDP---------------------VTFLPIAD-IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-  154 (373)
T ss_pred             eEEEEEC---------------------CCCcEEEE-EECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-
Confidence            7888865                     33332221 1000      01234578888  88888775   37899999 


Q ss_pred             CCCcEEEE-ecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeec-----CCCCC-eEEEEEecCCCEEEE
Q 005342          533 ETFQTLAT-FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNR-ITCLAYSLSLNVLVS  603 (701)
Q Consensus       533 ~~~~~~~~-~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~-----~h~~~-V~~v~~spdg~~l~s  603 (701)
                      .+++.+.. +... .   ++.+.|++  .+++.+.||.+.++|. +++.+....     ....+ .....+.+++..++.
T Consensus       155 ~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  229 (373)
T 2mad_H          155 QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW  229 (373)
T ss_pred             CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEE
Confidence            99998887 6532 1   35566776  6677888999999999 887763322     11122 233466776665554


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeeeeccC------CCCCCCCCeEEEEEcCCCCEEEEE-e----------cCeEEEEECC
Q 005342          604 SGADAQLCVWDAVGWKKLCSKFLHSFQT------GLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAP  666 (701)
Q Consensus       604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~------~~~~~~~~v~~v~~spdg~~l~sg-~----------Dg~I~iwd~~  666 (701)
                      .+.++.+.+.|+.++.......+. +..      +..+  .....+.++||++.+++. .          ++.|.++|..
T Consensus       230 ~~~~~~v~vid~~~~~~~v~~~~~-~~~~~~~~~~~~p--~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~  306 (373)
T 2mad_H          230 PVYSGKILQADISAAGATNKAPID-ALSGGRKADTWRP--GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL  306 (373)
T ss_pred             EcCCceEEEEeccCCcceEeeeee-ecCCcccccceec--CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC
Confidence            557889999999875322222222 111      1111  334558899999888774 2          2579999999


Q ss_pred             CCceeeeeee---eeEEEEEeeEE
Q 005342          667 TLNHTSQVLL---ISHIMFVQIVV  687 (701)
Q Consensus       667 ~g~~~~~l~~---i~~~~fs~~~~  687 (701)
                      +++.+++++.   ..+++|+|+..
T Consensus       307 t~~vv~~i~~g~~p~~i~~s~Dg~  330 (373)
T 2mad_H          307 VGQTSSQISLGHDVDAISVAQDGG  330 (373)
T ss_pred             CCEEEEEEECCCCcCeEEECCCCC
Confidence            9999999976   88999998854

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.17  E-value=6.3e-09  Score=106.60  Aligned_cols=218  Identities=10%  Similarity=-0.023  Sum_probs=144.7

Q ss_pred             CCEEEEEEecCCCEEEE-------EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc--CCCCCCeEEE
Q 005342          442 GRVVRLIYSHSGDFLVA-------LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCF  512 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s-------~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~l  512 (701)
                      ....+++|+++|..+++       ++.++.|.+||.                     .+++.......  .++...+.++
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~---------------------~~g~~~~~~~~~~~~~~~~~~~i   76 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDL---------------------KTGKKTVICKPEVNGYGGIPAGC   76 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECT---------------------TTCCEEEEECCEETTEECCEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeC---------------------CCCcEEEEEecccCCCCCCCceE
Confidence            45688999999987666       466788988854                     33433211000  1233568889


Q ss_pred             Eec-C-CEEEEEe-CCeEEEEeCCCCcEEEE-ecCC----CCCeEEEEEcCCC-eEEEEeCC---------------CcE
Q 005342          513 ALR-G-SHLFSAS-GGKISIFSLETFQTLAT-FANP----PPIATYFILLPQD-LFAFGFDD---------------SSI  568 (701)
Q Consensus       513 ~~s-~-~~l~s~s-dg~I~iwd~~~~~~~~~-~~~~----~~~i~~l~~spdg-~l~~gs~d---------------g~I  568 (701)
                      +++ . ..+..++ ++.|.+||.. ++.... ....    ...+.+++++++| ++++...+               +.|
T Consensus        77 ~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l  155 (314)
T 1pjx_A           77 QCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI  155 (314)
T ss_dssp             EECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred             EEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeE
Confidence            998 5 6666666 6689999997 665433 2211    2347899999999 66665554               578


Q ss_pred             EEEeCCCCceEEeecCCCCCeEEEEEe----cCCCEEE-EEeCCCeEEEEECC-CCeeeeeeeeeeccCCCCCCCCCeEE
Q 005342          569 LVHCPCTKKTKAKLKGHQNRITCLAYS----LSLNVLV-SSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNH  642 (701)
Q Consensus       569 ~iwd~~~~~~~~~l~~h~~~V~~v~~s----pdg~~l~-s~s~D~~I~vwd~~-~g~~~~~~~l~~~~~~~~~~~~~v~~  642 (701)
                      +.||.. ++..... .+......++|+    |+++.++ +.+.++.|++||.. ++.......+..+..+..   ..+..
T Consensus       156 ~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~---~~p~~  230 (314)
T 1pjx_A          156 YCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE---GGADG  230 (314)
T ss_dssp             EEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS---CEEEE
T ss_pred             EEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC---CCCCc
Confidence            888876 5544332 334457899999    9997554 44568999999987 454322222332222210   34678


Q ss_pred             EEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeE
Q 005342          643 IQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIV  686 (701)
Q Consensus       643 v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~  686 (701)
                      ++++++|++.++. .++.|.+||..+++.+..+..    +.+++|+|+.
T Consensus       231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg  279 (314)
T 1pjx_A          231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT  279 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTS
T ss_pred             eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCC
Confidence            9999999988875 688999999987887666543    8888887653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.17  E-value=5e-10  Score=117.47  Aligned_cols=160  Identities=11%  Similarity=0.027  Sum_probs=121.1

Q ss_pred             CeEEEEec--CCEEEEEeCCeEEEEeCCCCc-----------EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 005342          508 SISCFALR--GSHLFSASGGKISIFSLETFQ-----------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP  573 (701)
Q Consensus       508 ~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~-----------~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~  573 (701)
                      .+..++++  ...+++|+...+.+|+++...           ...... +.. |+.++|  |+ .++++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            68889998  778888885567779865433           112333 455 999999  77 88888 8899999999


Q ss_pred             CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342          574 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  653 (701)
Q Consensus       574 ~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~  653 (701)
                      ++.........|...+.++.+.+.  -+++++.||.+.+||++++...   .+.          ..|++++|||+|  ++
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~---~~~----------~~Vs~v~WSpkG--~~  176 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK---QLA----------QNVTSFDVTNSQ--LA  176 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE---EEE----------ESEEEEEECSSE--EE
T ss_pred             hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc---ccc----------CCceEEEEcCCc--eE
Confidence            887766666678888988877654  3888999999999999987532   233          779999999999  44


Q ss_pred             EE-ecCeEEEEECCCCce--eeee------e----e---eeEEEEEeeEEee
Q 005342          654 SI-HEGQIDVYEAPTLNH--TSQV------L----L---ISHIMFVQIVVKF  689 (701)
Q Consensus       654 sg-~Dg~I~iwd~~~g~~--~~~l------~----~---i~~~~fs~~~~~f  689 (701)
                      .| .||++++|+..+++.  .+++      .    .   |.+++|.+....+
T Consensus       177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~fl  228 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFL  228 (388)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred             EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEE
Confidence            54 899999999988775  5666      1    1   8888887654433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.11  E-value=5.5e-08  Score=100.65  Aligned_cols=180  Identities=8%  Similarity=0.037  Sum_probs=118.6

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCC-CCCCCCEEEEEEecCCCEEEEEECC----CcEEEEe
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWK  469 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-~~~~~~v~~l~~spdg~~l~s~s~d----g~i~vwd  469 (701)
                      +.+++|+|+|+++++. . ..|.+||..    +++...+.... ......+.+++++|+|+.+++...+    +...+|.
T Consensus        92 v~~i~~~~dg~l~v~~-~-~gl~~~d~~----~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~  165 (326)
T 2ghs_A           92 GSALAKISDSKQLIAS-D-DGLFLRDTA----TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  165 (326)
T ss_dssp             EEEEEEEETTEEEEEE-T-TEEEEEETT----TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             ceEEEEeCCCeEEEEE-C-CCEEEEECC----CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence            7889999999988765 3 348999986    55544433111 1123468899999999966554322    2344553


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCC--CC-c-----E
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE--TF-Q-----T  537 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~--~~-~-----~  537 (701)
                      +                   +  +++...  +. ........++|+  |+.++.+.  ++.|.+||+.  ++ .     .
T Consensus       166 ~-------------------~--~g~~~~--~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~  221 (326)
T 2ghs_A          166 V-------------------A--KGKVTK--LF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV  221 (326)
T ss_dssp             E-------------------E--TTEEEE--EE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE
T ss_pred             E-------------------e--CCcEEE--ee-CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceE
Confidence            3                   4  333221  10 122346788998  66665554  6899999986  55 3     1


Q ss_pred             EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe-cCCCEEEEEe
Q 005342          538 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS-LSLNVLVSSG  605 (701)
Q Consensus       538 ~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s-pdg~~l~s~s  605 (701)
                      ...+.........++++++| +.++...++.|.+||. +++.+..+..+...+++++|+ |+++.|+.++
T Consensus       222 ~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          222 FIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            22333334456889999999 6666667789999998 677777777676779999998 8887665443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.10  E-value=1.6e-08  Score=105.65  Aligned_cols=252  Identities=13%  Similarity=0.105  Sum_probs=162.4

Q ss_pred             EEEcCCCCeEEEEcC-----CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE----------CC
Q 005342          398 STSLPDADSAVCAKS-----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QT  462 (701)
Q Consensus       398 l~~spdg~~l~s~s~-----d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s----------~d  462 (701)
                      ....|+++.++....     ++.|.+.|..    +++... .++.  ...+  .++++|||+++++++          .+
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~----t~~v~~-~I~v--G~~P--~va~spDG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGE----AGRVIG-MIDG--GFLP--NPVVADDGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETT----TTEEEE-EEEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECC----CCeEEE-EEEC--CCCC--cEEECCCCCEEEEEcccccccccCCCC
Confidence            345789998887765     5789999987    444332 1111  1223  399999999888776          25


Q ss_pred             CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCC-----CCCCeEEEEec--CCEEEEEe---CCeEEEEeC
Q 005342          463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD-----PKDSISCFALR--GSHLFSAS---GGKISIFSL  532 (701)
Q Consensus       463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~~v~~l~~s--~~~l~s~s---dg~I~iwd~  532 (701)
                      +.|.+||                     ..+++.+.......     .......++++  |++++++.   ++.|.++|+
T Consensus       109 ~~VsviD---------------------~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~  167 (386)
T 3sjl_D          109 DYVEVFD---------------------PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL  167 (386)
T ss_dssp             EEEEEEC---------------------TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred             CEEEEEE---------------------CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence            6788874                     45555443211011     01245578888  88877764   489999999


Q ss_pred             CCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEeecCC----CCCe-EEEEEe-cCCCEEEE
Q 005342          533 ETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNRI-TCLAYS-LSLNVLVS  603 (701)
Q Consensus       533 ~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-~~~~~~l~~h----~~~V-~~v~~s-pdg~~l~s  603 (701)
                      .+++.+.++....    +..+.|.|  .+++.+.||++.+.++.+ ++.......+    ..++ ....|. ++|++++ 
T Consensus       168 ~t~~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-  242 (386)
T 3sjl_D          168 EGKAFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-  242 (386)
T ss_dssp             TTTEEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-
T ss_pred             CCCcEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-
Confidence            9999999886432    12233544  677888899999999876 5543322111    1222 224665 5776544 


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeee-----eccCCCCCCCCCeEEEEEcCCCCEEEEE-e----------cCeEEEEECCC
Q 005342          604 SGADAQLCVWDAVGWKKLCSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPT  667 (701)
Q Consensus       604 ~s~D~~I~vwd~~~g~~~~~~~l~-----~~~~~~~~~~~~v~~v~~spdg~~l~sg-~----------Dg~I~iwd~~~  667 (701)
                      .+.+|+|++.|..++.......+.     .+..+-.+  .....++++|+++.+++. .          .+.|.+.|+.+
T Consensus       243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t  320 (386)
T 3sjl_D          243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT  320 (386)
T ss_dssp             EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence            666899999999876422222221     01111111  333457779999888874 3          25699999999


Q ss_pred             Cceeeeeee---eeEEEEEeeE
Q 005342          668 LNHTSQVLL---ISHIMFVQIV  686 (701)
Q Consensus       668 g~~~~~l~~---i~~~~fs~~~  686 (701)
                      ++.++.++.   +.+++||++.
T Consensus       321 ~kv~~~i~vg~~~~~lavs~D~  342 (386)
T 3sjl_D          321 GERLAKFEMGHEIDSINVSQDE  342 (386)
T ss_dssp             CCEEEEEEEEEEECEEEECSSS
T ss_pred             CeEEEEEECCCCcceEEECCCC
Confidence            999999987   8899999885

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.08  E-value=6.4e-08  Score=103.45  Aligned_cols=227  Identities=6%  Similarity=0.014  Sum_probs=148.2

Q ss_pred             ceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEc
Q 005342          329 WWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSL  401 (701)
Q Consensus       329 ~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~s  401 (701)
                      .+.  .++|+|+       ..++.|++||..++......          .                   ...... ++|+
T Consensus       132 ~P~--~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~----------~-------------------~~~~~~-ia~~  179 (409)
T 3hrp_A          132 YMW--GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH----------P-------------------GFKGGK-PAVT  179 (409)
T ss_dssp             CEE--EEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE----------E-------------------TCCBCB-CEEC
T ss_pred             Cce--EEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee----------c-------------------cCCCCc-eeEe
Confidence            455  8889887       56688999998877655441          0                   111123 8899


Q ss_pred             CCCCeEEEEcCCC--cEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccc
Q 005342          402 PDADSAVCAKSLE--KSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  478 (701)
Q Consensus       402 pdg~~l~s~s~d~--~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g  478 (701)
                      |+++.|+.+..++  .|..|+..    .+.. ..+..........+.+++++|++..|+++..++.|..||..+      
T Consensus       180 ~~g~~l~~~d~~~~~~I~~~d~~----~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~------  249 (409)
T 3hrp_A          180 KDKQRVYSIGWEGTHTVYVYMKA----SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT------  249 (409)
T ss_dssp             TTSSEEEEEBSSTTCEEEEEEGG----GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT------
T ss_pred             cCCCcEEEEecCCCceEEEEEcC----CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC------
Confidence            9999999888766  68888875    2221 222100011345678899999555566677788888886532      


Q ss_pred             ccccceeeEEeeCCCCeEEee-cc-cCCCCCCe--EEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCC-----
Q 005342          479 EENVNMESQLYQPSSKLVMTN-DI-AADPKDSI--SCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPP-----  545 (701)
Q Consensus       479 ~~~~~~~i~~~d~~~~~~~~~-~~-~~~~~~~v--~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~-----  545 (701)
                                     +..... .. ..++...-  ..++++  +..|+.+.  ++.|+.||....  +..+.++.     
T Consensus       250 ---------------~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~  312 (409)
T 3hrp_A          250 ---------------QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTV  312 (409)
T ss_dssp             ---------------CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSC
T ss_pred             ---------------CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCc
Confidence                           221110 00 11111212  288888  45665555  689999998543  33333221     


Q ss_pred             ----------CCeEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCceEEeecCC---------------CCCeEEEEEecCC
Q 005342          546 ----------PIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGH---------------QNRITCLAYSLSL  598 (701)
Q Consensus       546 ----------~~i~~l~~spdg-~l~~gs-~dg~I~iwd~~~~~~~~~l~~h---------------~~~V~~v~~spdg  598 (701)
                                .....++++|+| ++++-+ .++.|+.||+.++.. .++.++               -.....++++|+|
T Consensus       313 ~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g  391 (409)
T 3hrp_A          313 QDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEG  391 (409)
T ss_dssp             BCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred             CCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence                      346899999999 778877 889999999877764 444444               2357899999999


Q ss_pred             CEEEEEeCCCeEEEEEC
Q 005342          599 NVLVSSGADAQLCVWDA  615 (701)
Q Consensus       599 ~~l~s~s~D~~I~vwd~  615 (701)
                      .++++...+++|+.+++
T Consensus       392 ~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          392 GYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEESTTCEEEEEEE
T ss_pred             CEEEEECCCCeEEEEEe
Confidence            88888888889988775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.07  E-value=8.9e-09  Score=118.25  Aligned_cols=233  Identities=9%  Similarity=-0.002  Sum_probs=143.6

Q ss_pred             cCcceeeeEEEEccC------------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          326 IMDWWVPYCINVMPN------------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       326 h~~~v~~~~l~fspd------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      |...+.  .++||||            +...+|++||+.+|+.+...         +.+.                    
T Consensus       127 ~~~~l~--~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~---------~~~~--------------------  175 (693)
T 3iuj_A          127 GTTALD--QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP---------LKDV--------------------  175 (693)
T ss_dssp             SCCEEE--EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE---------EEEE--------------------
T ss_pred             CcEEEE--EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc---------cCCc--------------------
Confidence            334455  7788888            23368999999998865431         1110                    


Q ss_pred             ceEEEEEcCCCCeEEEEcCCCc-------------EEEEeccccCCCCcee-EeecCCCC-CCCCEEEEEEecCCCEEEE
Q 005342          394 QSRESTSLPDADSAVCAKSLEK-------------SVNLKLQLINEPSECR-TLLLPDNS-FGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       394 ~V~~l~~spdg~~l~s~s~d~~-------------v~iw~~~~~~~~~~~~-~l~~~~~~-~~~~v~~l~~spdg~~l~s  458 (701)
                      ....++|+ ||+.|+.++.+..             |++|++.    +++.. .+...... +......+.|||||++|+.
T Consensus       176 k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg----t~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~  250 (693)
T 3iuj_A          176 KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG----TAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLI  250 (693)
T ss_dssp             ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT----SCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEE
T ss_pred             eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC----CCcccceEEEecCCCCCeEEEEEEEcCCCCEEEE
Confidence            02357899 9999999887743             8999986    32211 11112223 3455788999999998865


Q ss_pred             EEC----CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe--C---CeEE
Q 005342          459 LTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--G---GKIS  528 (701)
Q Consensus       459 ~s~----dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s--d---g~I~  528 (701)
                      ...    ++.+.++|+.++                   .+....  + ..+.........+ |+.++..+  +   +.|.
T Consensus       251 ~~~~~~~~~~i~~~d~~~~-------------------~~~~~~--l-~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~  308 (693)
T 3iuj_A          251 SAANSTSGNRLYVKDLSQE-------------------NAPLLT--V-QGDLDADVSLVDNKGSTLYLLTNRDAPNRRLV  308 (693)
T ss_dssp             EEESSSSCCEEEEEETTST-------------------TCCCEE--E-ECSSSSCEEEEEEETTEEEEEECTTCTTCEEE
T ss_pred             EEccCCCCcEEEEEECCCC-------------------CCceEE--E-eCCCCceEEEEeccCCEEEEEECCCCCCCEEE
Confidence            543    246777765321                   112211  1 1233344443223 66554443  3   6899


Q ss_pred             EEeCCCCcE--EEEecCCCCCeEEEEEcCCC-eEEEE-eCCC--cEEEEeCCCCceEEeec-CCCCCeEEEEEecCCCEE
Q 005342          529 IFSLETFQT--LATFANPPPIATYFILLPQD-LFAFG-FDDS--SILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVL  601 (701)
Q Consensus       529 iwd~~~~~~--~~~~~~~~~~i~~l~~spdg-~l~~g-s~dg--~I~iwd~~~~~~~~~l~-~h~~~V~~v~~spdg~~l  601 (701)
                      .+|+.++..  .+.+..+...+.  .|++++ .|+.. ..++  .|++||+..+. ...+. .+.+.+..+.++|+++.+
T Consensus       309 ~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l  385 (693)
T 3iuj_A          309 TVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPAL  385 (693)
T ss_dssp             EEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCE
T ss_pred             EEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEE
Confidence            999987654  345555655554  889998 55544 4454  78999987554 44443 244567778888888766


Q ss_pred             EEEeCC----CeEEEEECCCCe
Q 005342          602 VSSGAD----AQLCVWDAVGWK  619 (701)
Q Consensus       602 ~s~s~D----~~I~vwd~~~g~  619 (701)
                      +....+    ++|+.||+.+++
T Consensus       386 ~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          386 YFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEecCCCCCCEEEEEECCCCe
Confidence            544433    799999998875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.05  E-value=3.5e-09  Score=110.72  Aligned_cols=255  Identities=14%  Similarity=-0.024  Sum_probs=157.7

Q ss_pred             eEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc----------CCC
Q 005342          345 TISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK----------SLE  414 (701)
Q Consensus       345 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s----------~d~  414 (701)
                      +|.+.|..+++.+..+          +.                  +...  .+.++|||++++.+.          .++
T Consensus        47 ~vsvID~~t~~v~~~i----------~v------------------G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~   96 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHS----------LG------------------AFLS--LAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             EEEEEETTTTEEEEEE----------EE------------------CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             eEEEEECCCCeEEEEE----------eC------------------CCCC--ceEECCCCCEEEEEcccccccccCCCCC
Confidence            8889999998887773          11                  1112  589999999999886          368


Q ss_pred             cEEEEeccccCCCCce-eEeecCCCCC---CCCEEEEEEecCCCEEEEEEC--CCcEEE--EecCCCCccccccccceee
Q 005342          415 KSVNLKLQLINEPSEC-RTLLLPDNSF---GGRVVRLIYSHSGDFLVALTQ--TATHKL--WKWQSNKQSLEEENVNMES  486 (701)
Q Consensus       415 ~v~iw~~~~~~~~~~~-~~l~~~~~~~---~~~v~~l~~spdg~~l~s~s~--dg~i~v--wd~~~~~~~~g~~~~~~~i  486 (701)
                      .|.+||+.    +++. ..+.++....   ......++++|||++++++..  ++.+.+  +|.                
T Consensus        97 ~VsviD~~----T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~----------------  156 (368)
T 1mda_H           97 YVEVFDPV----TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA----------------  156 (368)
T ss_dssp             EEEEECTT----TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT----------------
T ss_pred             EEEEEECC----CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEch----------------
Confidence            89999998    4443 2332320000   123457899999999998875  356777  654                


Q ss_pred             EEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCC-----CcEEEE----ecCCCCCeEEEEEcC
Q 005342          487 QLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLET-----FQTLAT----FANPPPIATYFILLP  555 (701)
Q Consensus       487 ~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~-----~~~~~~----~~~~~~~i~~l~~sp  555 (701)
                           .+   +.. +..+.  .+ .+... ...+++.+ ||.+.+.|+.+     ++....    +.....+.   . ++
T Consensus       157 -----~t---v~~-i~v~~--~~-~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~  220 (368)
T 1mda_H          157 -----SD---DQL-TKSAS--CF-HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-AN  220 (368)
T ss_dssp             -----EE---EEE-EECSS--CC-CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ET
T ss_pred             -----hh---ceE-EECCC--ce-EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cc
Confidence                 33   110 11111  11 12223 34444445 88888889876     433211    11112232   3 66


Q ss_pred             CC-eEEEEeCCCcEEEEeCCCCc--eEEeecC----------CCCCeEEEEEecCCCEEEEEeC---------CCeEEEE
Q 005342          556 QD-LFAFGFDDSSILVHCPCTKK--TKAKLKG----------HQNRITCLAYSLSLNVLVSSGA---------DAQLCVW  613 (701)
Q Consensus       556 dg-~l~~gs~dg~I~iwd~~~~~--~~~~l~~----------h~~~V~~v~~spdg~~l~s~s~---------D~~I~vw  613 (701)
                      ++ .++..+. +.+.+.|..+..  .+..+.-          .......++++||++.++.+..         ++.+.++
T Consensus       221 ~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~Vi  299 (368)
T 1mda_H          221 YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV  299 (368)
T ss_dssp             TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred             cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEE
Confidence            66 5555555 999999986542  3333321          0112223689999987765432         2356699


Q ss_pred             ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE-EEE--ecCeEEEEECCCCceeeeeee
Q 005342          614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LSI--HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l-~sg--~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      |+.+++.+...++.          ....+++|+|||+.+ ++.  .+++|.++|+.+++.+++++.
T Consensus       300 D~~t~~vv~~i~vg----------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          300 TASVGQTSGPISNG----------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             ESSSCCEEECCEEE----------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             ECCCCeEEEEEECC----------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence            99997644332222          457899999999854 444  389999999999999999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.04  E-value=4.2e-08  Score=102.30  Aligned_cols=236  Identities=9%  Similarity=0.011  Sum_probs=147.7

Q ss_pred             eEEEEEcCCCCeEEEEc--CCCcEEEEeccccCCCCceeEee---cCCCCCCCCEEEEEEecCCCEEEEEEC-----CCc
Q 005342          395 SRESTSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLL---LPDNSFGGRVVRLIYSHSGDFLVALTQ-----TAT  464 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s--~d~~v~iw~~~~~~~~~~~~~l~---~~~~~~~~~v~~l~~spdg~~l~s~s~-----dg~  464 (701)
                      +..++++|+|+.+++..  .++.+++|.+.    .++...+.   .....+...+.+++++++|+.+++-..     ++.
T Consensus        19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~----~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           19 PGNITLTPDGRLFLSLHQFYQPEMQVAELT----QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             EEEEEECTTSCEEEEECGGGCCSCSEEEEE----TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             cceEEECCCCCEEEEeCCCCCCceEEEEEC----CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            78899999999999864  23436677765    33333211   011234568999999999885554433     467


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEee-ccc---CCCCCCeEEEEec--CCEEEEE-----eCCeEEEEeCC
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIA---ADPKDSISCFALR--GSHLFSA-----SGGKISIFSLE  533 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~---~~~~~~v~~l~~s--~~~l~s~-----sdg~I~iwd~~  533 (701)
                      |.+||+                     .+++++.. .+.   ..+...+..++++  +..++.+     .++.|.+||..
T Consensus        95 i~~~d~---------------------~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~  153 (343)
T 2qe8_A           95 LVAWDT---------------------LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ  153 (343)
T ss_dssp             EEEEET---------------------TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred             EEEEEC---------------------CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence            777754                     55553221 111   0123456788888  4454433     24789999998


Q ss_pred             CCcEEEEecCCC-----------------------------CCeEEEEEcCCC-eEEEEeCCC-cEEEEeCC---CCc--
Q 005342          534 TFQTLATFANPP-----------------------------PIATYFILLPQD-LFAFGFDDS-SILVHCPC---TKK--  577 (701)
Q Consensus       534 ~~~~~~~~~~~~-----------------------------~~i~~l~~spdg-~l~~gs~dg-~I~iwd~~---~~~--  577 (701)
                      +++..+.+.+|.                             ..+..++++||| .++++..++ .++.++..   .+.  
T Consensus       154 ~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~  233 (343)
T 2qe8_A          154 TGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLT  233 (343)
T ss_dssp             TCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred             CCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence            887766654321                             235789999999 777776665 56665532   111  


Q ss_pred             ---eEE--eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE
Q 005342          578 ---TKA--KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  652 (701)
Q Consensus       578 ---~~~--~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l  652 (701)
                         ...  ...++.+....++++++|++.++...++.|.+||..+|+.   ..+....  +.   ....+++|.++|+++
T Consensus       234 ~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~---~~~~~~~--~~---~~p~~va~~~~g~l~  305 (343)
T 2qe8_A          234 DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY---KLLVTDE--KL---SWTDSFNFGSDGYLY  305 (343)
T ss_dssp             HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE---EEEEECG--GG---SCEEEEEECTTSCEE
T ss_pred             hhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE---EEEEECC--ce---ecCCeeEECCCCcEE
Confidence               000  1123445567899999999999999999999999966642   1222111  11   568999999999887


Q ss_pred             EEE-ecCeEEEE
Q 005342          653 LSI-HEGQIDVY  663 (701)
Q Consensus       653 ~sg-~Dg~I~iw  663 (701)
                      +++ ..+.+.+|
T Consensus       306 v~~~~~~~~~~f  317 (343)
T 2qe8_A          306 FDCNQLHHSAPL  317 (343)
T ss_dssp             EEECCGGGSGGG
T ss_pred             EEeCcccccccc
Confidence            775 33333333

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.01  E-value=2.1e-08  Score=106.58  Aligned_cols=248  Identities=14%  Similarity=0.092  Sum_probs=159.5

Q ss_pred             CCCCeEEEEcC-C----CcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEecCCCEEEEEEC----------CCcE
Q 005342          402 PDADSAVCAKS-L----EKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATH  465 (701)
Q Consensus       402 pdg~~l~s~s~-d----~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spdg~~l~s~s~----------dg~i  465 (701)
                      |+++.++.+.. +    +.|.+.|..    +.+... +..  .  ..+  .++++|||++++++..          ++.|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~----t~~vv~~I~v--G--~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V  151 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGS----TGRILGMTDG--G--FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYV  151 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETT----TTEEEEEEEE--C--SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECC----CCEEEEEEEC--C--CCC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence            56666555543 2    689999997    444332 222  1  233  8999999998888763          5677


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccC--C---CCCCeEEEEec--CCEEEEEe---CCeEEEEeCCCC
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--D---PKDSISCFALR--GSHLFSAS---GGKISIFSLETF  535 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~--~---~~~~v~~l~~s--~~~l~s~s---dg~I~iwd~~~~  535 (701)
                      .++                     |..+++.+......  .   .......++++  |++++++.   ++.|.++|+.++
T Consensus       152 svi---------------------D~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~  210 (426)
T 3c75_H          152 EVF---------------------DPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK  210 (426)
T ss_dssp             EEE---------------------CTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             EEE---------------------ECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence            777                     44555544321101  0   01234567888  88888775   478999999999


Q ss_pred             cEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEe----ecCCCCCe-EEEEEecCCCEEEEEeCCC
Q 005342          536 QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK----LKGHQNRI-TCLAYSLSLNVLVSSGADA  608 (701)
Q Consensus       536 ~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~----l~~h~~~V-~~v~~spdg~~l~s~s~D~  608 (701)
                      +.+.++....    +....|++  .+++.+.||++.+.+..+++....    +.....++ ..+.+++++..++..+..+
T Consensus       211 kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g  286 (426)
T 3c75_H          211 TFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTG  286 (426)
T ss_dssp             EEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTS
T ss_pred             eEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCC
Confidence            9988887422    13455655  566677888888888766655422    22112221 2357899988877778889


Q ss_pred             eEEEEECCCCeeeeeeeeeecc------CCCCCCCCCeEEEEEcCCCCEEEEE-e----------cCeEEEEECCCCcee
Q 005342          609 QLCVWDAVGWKKLCSKFLHSFQ------TGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHT  671 (701)
Q Consensus       609 ~I~vwd~~~g~~~~~~~l~~~~------~~~~~~~~~v~~v~~spdg~~l~sg-~----------Dg~I~iwd~~~g~~~  671 (701)
                      +|.+.|..++.......+. +.      .+..+  .....++++||++.+++. .          ++.|.++|..+++.+
T Consensus       287 ~V~ViD~~~~~~~v~~~~~-~~~~~~i~~g~~p--~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv  363 (426)
T 3c75_H          287 KIFQADLTAEGATFRAPIE-ALTEAERADDWRP--GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI  363 (426)
T ss_dssp             EEEEEEECSSCEEECCCEE-SSCTTTGGGTEEE--CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred             cEEEEeccCCceEEeeeee-ecccccccccccc--CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE
Confidence            9999999775422111111 11      01100  222246899999887764 2          347999999999999


Q ss_pred             eeeee---eeEEEEEeeEE
Q 005342          672 SQVLL---ISHIMFVQIVV  687 (701)
Q Consensus       672 ~~l~~---i~~~~fs~~~~  687 (701)
                      ++++.   ..+++|+|+..
T Consensus       364 ~~I~vg~~P~gia~spDg~  382 (426)
T 3c75_H          364 NKIELGHEIDSINVSQDAE  382 (426)
T ss_dssp             EEEEEEEEECEEEECCSSS
T ss_pred             EEEECCCCcCeEEEccCCC
Confidence            99986   88899998743

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.97  E-value=1.2e-07  Score=97.06  Aligned_cols=209  Identities=11%  Similarity=-0.008  Sum_probs=136.0

Q ss_pred             CCCEEEEEEecCCCEE-EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC
Q 005342          441 GGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  517 (701)
Q Consensus       441 ~~~v~~l~~spdg~~l-~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~  517 (701)
                      ........|+|+|+.| ++...++.|..|+.                      ++....  + ..+...+..++++  |+
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~----------------------~g~~~~--~-~~~~~~~~gl~~d~dG~   98 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE----------------------DGTVDV--L-LDATAFTNGNAVDAQQR   98 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEET----------------------TSCEEE--E-EESCSCEEEEEECTTSC
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeC----------------------CCCEEE--E-eCCCCccceeeECCCCC
Confidence            4556789999999955 44445788888843                      222211  1 1234568889998  66


Q ss_pred             EEEEEe-CCeEEEEeCCCCcEEEEec---CC-CCCeEEEEEcCCC-eEEE----EeC-------------CCcEEEEeCC
Q 005342          518 HLFSAS-GGKISIFSLETFQTLATFA---NP-PPIATYFILLPQD-LFAF----GFD-------------DSSILVHCPC  574 (701)
Q Consensus       518 ~l~s~s-dg~I~iwd~~~~~~~~~~~---~~-~~~i~~l~~spdg-~l~~----gs~-------------dg~I~iwd~~  574 (701)
                      ++++.. ++.|.+||.. ++......   +. ...+..++++|+| +.++    |+.             .+.|+.||..
T Consensus        99 l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~  177 (305)
T 3dr2_A           99 LVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD  177 (305)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred             EEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence            554444 5899999985 55322211   11 1345789999999 6665    332             3578889987


Q ss_pred             CCceEEeecCCCCCeEEEEEecCCCEEEEEeCC------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342          575 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       575 ~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd  648 (701)
                      +++.....  .....+.++|+||++.|+.+...      +.|++|++..+.......+...   ..   .....+++.++
T Consensus       178 ~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~---~~---~~pdgi~~d~~  249 (305)
T 3dr2_A          178 GSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV---PD---GLPDGFCVDRG  249 (305)
T ss_dssp             SCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC---SS---SCCCSEEECTT
T ss_pred             CCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC---CC---CCCCeEEECCC
Confidence            77654433  33457889999999977776655      7899999987542111222211   11   44567899999


Q ss_pred             CCEEEEEecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342          649 QIHLLSIHEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       649 g~~l~sg~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~  685 (701)
                      |++.++. .+.|.+|+. +|+.+..+..   +++++|+|.
T Consensus       250 G~lwv~~-~~gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d  287 (305)
T 3dr2_A          250 GWLWSSS-GTGVCVFDS-DGQLLGHIPTPGTASNCTFDQA  287 (305)
T ss_dssp             SCEEECC-SSEEEEECT-TSCEEEEEECSSCCCEEEECTT
T ss_pred             CCEEEec-CCcEEEECC-CCCEEEEEECCCceeEEEEeCC
Confidence            9955544 445999998 6777777765   788888753

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.91  E-value=1.9e-07  Score=96.19  Aligned_cols=279  Identities=8%  Similarity=-0.062  Sum_probs=170.4

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGD  381 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D  381 (701)
                      +.|..+| .+++.+.....+...+.  ++...++     +.++ +..+|. +|+.+..          +.....      
T Consensus        40 ~~l~~~d-~~g~~~~~~~~~~~~~~--~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~----------~~~~~~------   98 (330)
T 3hxj_A           40 KNLYAIN-TDGSVKWFFKSGEIIEC--RPSIGKDGTIYFGSDK-VYAINP-DGTEKWR----------FDTKKA------   98 (330)
T ss_dssp             TTTEEEC-TTSCEEESSCGGGEEEE--CCEETTTTEECCSSCE-EEEECC-CGGGGGG----------SCC---------
T ss_pred             CEEEEEC-CCCcEEEEEecCCCccc--ceEEecCCcEEEecCc-EEEECC-CCcEEEE----------EECCCC------
Confidence            4566777 77776655444434444  5555544     4444 777775 5544433          111100      


Q ss_pred             CCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC
Q 005342          382 DSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ  461 (701)
Q Consensus       382 ~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~  461 (701)
                                  ......+.  +..+..++.++.+..+|..    ....+....    +...+.++...++|. +..++.
T Consensus        99 ------------~~~~~~~~--~~~l~v~t~~~~l~~~d~~----g~~~~~~~~----~~~~~~~~~~~~~g~-l~vgt~  155 (330)
T 3hxj_A           99 ------------IVSDFTIF--EDILYVTSMDGHLYAINTD----GTEKWRFKT----KKAIYATPIVSEDGT-IYVGSN  155 (330)
T ss_dssp             --------------CCEEEE--TTEEEEECTTSEEEEECTT----SCEEEEEEC----SSCCCSCCEECTTSC-EEEECT
T ss_pred             ------------cccCceEE--CCEEEEEecCCEEEEEcCC----CCEEEEEcC----CCceeeeeEEcCCCE-EEEEcC
Confidence                        01122233  4567778888889998875    223333222    233455566677777 566777


Q ss_pred             CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEE
Q 005342          462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLAT  540 (701)
Q Consensus       462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~  540 (701)
                      ++.+..+|.                     . +..... + ......+.++... +..+..++ +.+..+| .+++....
T Consensus       156 ~~~l~~~d~---------------------~-g~~~~~-~-~~~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~  209 (330)
T 3hxj_A          156 DNYLYAINP---------------------D-GTEKWR-F-KTNDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWN  209 (330)
T ss_dssp             TSEEEEECT---------------------T-SCEEEE-E-ECSSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEE
T ss_pred             CCEEEEECC---------------------C-CCEeEE-E-ecCCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEE
Confidence            888888854                     3 332211 1 1123345566675 44455556 8899999 78888777


Q ss_pred             ecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          541 FANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       541 ~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      +......+.++..+++|.+.+++.++.+..+|. +++.+..+......+.++...+++. |..++.++.|..+|. +|+.
T Consensus       210 ~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          210 FYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTE  286 (330)
T ss_dssp             ECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCE
T ss_pred             EccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcE
Confidence            776666788899998886666788889999984 5666666654444455566666665 556788889999996 5653


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT  667 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~  667 (701)
                      ....  . +  ..    ..+.++...++|++.+.+.+|.+++...+.
T Consensus       287 ~~~~--~-~--~~----~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          287 KWNF--E-T--GS----WIIATPVIDENGTIYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             EEEE--E-C--SS----CCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred             EEEE--E-c--CC----ccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence            3222  1 1  11    456677788899877777899998887643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.89  E-value=2.3e-07  Score=96.67  Aligned_cols=218  Identities=10%  Similarity=0.010  Sum_probs=139.0

Q ss_pred             CCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee----cccCCCCCCeEEEEec
Q 005342          442 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN----DIAADPKDSISCFALR  515 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~----~~~~~~~~~v~~l~~s  515 (701)
                      ..+..++++|+|+.+++...  ++.+.+|.+.                     ++.+...    .....+...+..++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~---------------------~g~~~~~p~~~~~~~~~~~~p~gv~~d   75 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT---------------------QDGLIPFPPQSGNAIITFDTVLGIKSD   75 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE---------------------TTEEEESCCCCSSCCCCCSCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC---------------------CCCeecCCCcccCcccceeEeeEEEEc
Confidence            57889999999998887642  3435666552                     2222210    0012345678999999


Q ss_pred             -CCEEEEEe-------CCeEEEEeCCCCcEEEEecCC------CCCeEEEEEcCCC--eEEEEe---CCCcEEEEeCCCC
Q 005342          516 -GSHLFSAS-------GGKISIFSLETFQTLATFANP------PPIATYFILLPQD--LFAFGF---DDSSILVHCPCTK  576 (701)
Q Consensus       516 -~~~l~s~s-------dg~I~iwd~~~~~~~~~~~~~------~~~i~~l~~spdg--~l~~gs---~dg~I~iwd~~~~  576 (701)
                       ...|....       ++.|.+||+.+++.+..+..+      ...+..++++|++  .+++.+   .++.|.+||..++
T Consensus        76 ~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g  155 (343)
T 2qe8_A           76 GNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG  155 (343)
T ss_dssp             SSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC
T ss_pred             CCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC
Confidence             44454443       379999999999877766532      2346899999865  445555   6789999999988


Q ss_pred             ceEEeecCCC-----------------------------CCeEEEEEecCCCEEEEEeCCC-eEEEEECC---CCeeeee
Q 005342          577 KTKAKLKGHQ-----------------------------NRITCLAYSLSLNVLVSSGADA-QLCVWDAV---GWKKLCS  623 (701)
Q Consensus       577 ~~~~~l~~h~-----------------------------~~V~~v~~spdg~~l~s~s~D~-~I~vwd~~---~g~~~~~  623 (701)
                      +..+.+.+|.                             ..++.++|+|||+.|+.+..++ .++.++..   .+.....
T Consensus       156 ~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~  235 (343)
T 2qe8_A          156 LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA  235 (343)
T ss_dssp             CEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH
T ss_pred             CEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh
Confidence            7776664431                             2368899999999888877665 55555532   1100000


Q ss_pred             ---eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee---e--eeEEEEEee
Q 005342          624 ---KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL---L--ISHIMFVQI  685 (701)
Q Consensus       624 ---~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~---~--i~~~~fs~~  685 (701)
                         ..+. .. ++.   .....++++++|.++++. .++.|.+||..+|+......   .  .++++|++.
T Consensus       236 ~~~~~~~-~~-g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~  301 (343)
T 2qe8_A          236 ELGSKIE-RY-SEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD  301 (343)
T ss_dssp             HHHTTCE-EE-EEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred             hhhcceE-ec-ccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence               0000 00 111   345678999999988886 78899999986676433221   1  677777653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.88  E-value=1.6e-07  Score=107.01  Aligned_cols=308  Identities=10%  Similarity=0.032  Sum_probs=176.3

Q ss_pred             CcccccccCccceeEEEeecCcc---------eeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDW---------WVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEG  372 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~---------v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~  372 (701)
                      +.|.-+|..+|+.+...+.....         +....+++..+     +.|+.+..+|..+|+.+-..          ..
T Consensus        87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~----------~~  156 (677)
T 1kb0_A           87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ----------NT  156 (677)
T ss_dssp             GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE----------ET
T ss_pred             CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeee----------cC
Confidence            55667788899988887654321         01012333333     67899999999999876652          11


Q ss_pred             C-CcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcC------CCcEEEEeccccCCCCc-eeEeecCCCC-----
Q 005342          373 R-PLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS------LEKSVNLKLQLINEPSE-CRTLLLPDNS-----  439 (701)
Q Consensus       373 ~-~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~------d~~v~iw~~~~~~~~~~-~~~l~~~~~~-----  439 (701)
                      . ..          .   .+......... .+ ..++.++.      ++.|..+|..    +++ .+.+......     
T Consensus       157 ~~~~----------~---~~~~~~~~p~v-~~-~~v~v~~~~~~~~~~g~v~a~D~~----tG~~~W~~~~~~~~~~~~~  217 (677)
T 1kb0_A          157 FEGQ----------K---GSLTITGAPRV-FK-GKVIIGNGGAEYGVRGYITAYDAE----TGERKWRWFSVPGDPSKPF  217 (677)
T ss_dssp             TTTC----------C---SSCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETT----TCCEEEEEESSCCCTTSCC
T ss_pred             CcCc----------C---cCcccccCcEE-EC-CEEEEEecccccCCCCEEEEEECC----CCcEEEEeccCCCCccccc
Confidence            1 00          0   00000000111 13 34444432      6889999987    444 3333321100     


Q ss_pred             -----------------------CCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeE
Q 005342          440 -----------------------FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV  496 (701)
Q Consensus       440 -----------------------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~  496 (701)
                                             .......++++|++..++.++.++..  |.........|......++..+|..+|+.
T Consensus       218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~--w~~~~~~~~~gd~~~~~sv~AlD~~TG~~  295 (677)
T 1kb0_A          218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSP--WSHKVRSPKGGDNLYLASIVALDPDTGKY  295 (677)
T ss_dssp             SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHSTTCCCCTTTTEEEEECTTTCCE
T ss_pred             cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcc--ccCCCCCccCCCCeeeEEEEEEECCCCCE
Confidence                                   01111357888998888888776543  42211000012222222455667788875


Q ss_pred             EeecccCCCC-------CCeEEEEe--cC---CEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC-----------e----
Q 005342          497 MTNDIAADPK-------DSISCFAL--RG---SHLFSAS-GGKISIFSLETFQTLATFANPPPI-----------A----  548 (701)
Q Consensus       497 ~~~~~~~~~~-------~~v~~l~~--s~---~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~-----------i----  548 (701)
                      .-..-...|.       .....+..  .|   ..++.++ +|.++++|..+|+.+..+......           +    
T Consensus       296 ~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~  375 (677)
T 1kb0_A          296 KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAA  375 (677)
T ss_dssp             EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGG
T ss_pred             EEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccc
Confidence            4221101121       11222222  25   5778888 899999999999988766422100           0    


Q ss_pred             --------------------EEEEEcCCC-eEEEEeC-------------------------------------------
Q 005342          549 --------------------TYFILLPQD-LFAFGFD-------------------------------------------  564 (701)
Q Consensus       549 --------------------~~l~~spdg-~l~~gs~-------------------------------------------  564 (701)
                                          ..++++|++ .++++..                                           
T Consensus       376 ~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~  455 (677)
T 1kb0_A          376 ARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKP  455 (677)
T ss_dssp             GGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCC
T ss_pred             cCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCC
Confidence                                257889988 6666543                                           


Q ss_pred             CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEE
Q 005342          565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ  644 (701)
Q Consensus       565 dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~  644 (701)
                      .|.|..||+.+++.+-.+. +..++....+..++..++.++.|+.+++||.++|+.+....+     ++.   ....-+.
T Consensus       456 ~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~-----~~~---~~~~p~~  526 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT-----GTG---VVAAPST  526 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-----SSC---CCSCCEE
T ss_pred             ccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC-----CCC---cccCCEE
Confidence            2789999999999887776 344555666777888888899999999999999975543322     221   2233456


Q ss_pred             EcCCCCEEEE
Q 005342          645 FHPDQIHLLS  654 (701)
Q Consensus       645 ~spdg~~l~s  654 (701)
                      |.++|+..++
T Consensus       527 y~~~G~~~v~  536 (677)
T 1kb0_A          527 YMVDGRQYVS  536 (677)
T ss_dssp             EEETTEEEEE
T ss_pred             EEeCCEEEEE
Confidence            7788876554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.87  E-value=6.4e-07  Score=102.26  Aligned_cols=156  Identities=13%  Similarity=0.072  Sum_probs=106.0

Q ss_pred             EEEec--CCEEEEEe-CC-------------------eEEEEeCCCCcEEEEecCC--C-------CCeEEEEEcCCC--
Q 005342          511 CFALR--GSHLFSAS-GG-------------------KISIFSLETFQTLATFANP--P-------PIATYFILLPQD--  557 (701)
Q Consensus       511 ~l~~s--~~~l~s~s-dg-------------------~I~iwd~~~~~~~~~~~~~--~-------~~i~~l~~spdg--  557 (701)
                      .++++  ++.++.++ ++                   .|..+|.++|+.+..++..  .       .+........+|  
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            45665  66777776 55                   4999999999999887642  1       112222222244  


Q ss_pred             --eEEEEeCCCcEEEEeCCCCceEEeecCCC-C--------------------------------------CeEEEEEec
Q 005342          558 --LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-N--------------------------------------RITCLAYSL  596 (701)
Q Consensus       558 --~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-~--------------------------------------~V~~v~~sp  596 (701)
                        .++.++.+|.++++|..+|+.+....... .                                      .-..++++|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              68889999999999999999874322100 0                                      012368899


Q ss_pred             CCCEEEEEeC---------------------------------------------CCeEEEEECCCCeeeeeeeeeeccC
Q 005342          597 SLNVLVSSGA---------------------------------------------DAQLCVWDAVGWKKLCSKFLHSFQT  631 (701)
Q Consensus       597 dg~~l~s~s~---------------------------------------------D~~I~vwd~~~g~~~~~~~l~~~~~  631 (701)
                      +..++++.+.                                             +|.|+.||+.+|+..-.....    
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----  474 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----  474 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----
Confidence            8887776532                                             378999999999755433322    


Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          632 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       632 ~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                            .++..-.++..+.+++++ .||.++.||.++|+.+.++..
T Consensus       475 ------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          475 ------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             ------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ------CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence                  223333556677788776 799999999999999987765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.85  E-value=7.8e-07  Score=87.88  Aligned_cols=202  Identities=12%  Similarity=0.026  Sum_probs=132.8

Q ss_pred             CCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEE
Q 005342          442 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL  519 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l  519 (701)
                      .....+.|+|||...++.+.  ++.|.+.                     |+.+++.+.... -+.......+++.|+.+
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~i---------------------D~~tg~v~~~i~-l~~~~fgeGi~~~g~~l   78 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLYGRSSVRQV---------------------ALQTGKVENIHK-MDDSYFGEGLTLLNEKL   78 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECSTTTCEEEEE---------------------ETTTCCEEEEEE-CCTTCCEEEEEEETTEE
T ss_pred             CCcccEEEeCCCeEEEECCCCCCCEEEEE---------------------ECCCCCEEEEEe-cCCCcceEEEEEeCCEE
Confidence            34688999998754444443  5788887                     556676554321 11222334566666677


Q ss_pred             EEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-----CCeEE
Q 005342          520 FSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRITC  591 (701)
Q Consensus       520 ~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----~~V~~  591 (701)
                      +.+.  ++.+.++|..+++.+.++......  ...+++|| .++++..++.|+++|..+.+.+..+.-..     ..++.
T Consensus        79 yv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           79 YQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             EEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence            6666  799999999999999988643111  23456678 55555678899999999998887776321     24678


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC----CCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEEC
Q 005342          592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT----GLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA  665 (701)
Q Consensus       592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~----~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~  665 (701)
                      +.|. +|...+....++.|.+-|..+++......+..+..    ...+.....+.|+|+|+++.+++ + ..+.+.+.++
T Consensus       157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            8888 77655666568899999999987544333321100    00001135689999999876665 5 5778888877


Q ss_pred             CCC
Q 005342          666 PTL  668 (701)
Q Consensus       666 ~~g  668 (701)
                      ...
T Consensus       236 ~~~  238 (266)
T 2iwa_A          236 HLV  238 (266)
T ss_dssp             EEC
T ss_pred             ecc
Confidence            543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.85  E-value=1.7e-06  Score=91.12  Aligned_cols=292  Identities=9%  Similarity=-0.033  Sum_probs=161.6

Q ss_pred             CcccccccCccceeEEEeecCc---------ceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMD---------WWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEG  372 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~---------~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~  372 (701)
                      +.|..+|..+|+.+........         .+. .......+     +.++.+..+|..+|+.+-..          ..
T Consensus        63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~----------~~  131 (376)
T 3q7m_A           63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLS-GGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQT----------KV  131 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECCC---CCSCCCCCEE-EEEEEETTEEEEEETTSEEEEEETTTCCEEEEE----------EC
T ss_pred             CeEEEEEccCCceeeeecCccccccccccCcccc-cCceEeCCEEEEEcCCCEEEEEECCCCCEEEEE----------eC
Confidence            5677888888988877665321         111 12223333     66789999999999876541          11


Q ss_pred             CCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCc-eeEeecCCCCC-CCCEEEEEEe
Q 005342          373 RPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSF-GGRVVRLIYS  450 (701)
Q Consensus       373 ~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~-~~~l~~~~~~~-~~~v~~l~~s  450 (701)
                      ...+                  .......  +..++.++.++.+..+|..    +++ .+......... ..........
T Consensus       132 ~~~~------------------~~~p~~~--~~~v~v~~~~g~l~~~d~~----tG~~~W~~~~~~~~~~~~~~~~~~~~  187 (376)
T 3q7m_A          132 AGEA------------------LSRPVVS--DGLVLIHTSNGQLQALNEA----DGAVKWTVNLDMPSLSLRGESAPTTA  187 (376)
T ss_dssp             SSCC------------------CSCCEEE--TTEEEEECTTSEEEEEETT----TCCEEEEEECCC-----CCCCCCEEE
T ss_pred             CCce------------------EcCCEEE--CCEEEEEcCCCeEEEEECC----CCcEEEEEeCCCCceeecCCCCcEEE
Confidence            1000                  0011111  3477778888999999987    444 33322211000 0000111122


Q ss_pred             cCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe-ecccCCCCCCe-EEEEecCCEEEEEe-CCeE
Q 005342          451 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSI-SCFALRGSHLFSAS-GGKI  527 (701)
Q Consensus       451 pdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v-~~l~~s~~~l~s~s-dg~I  527 (701)
                        +..+++++.++.+..+|..++..            +|......... ..+.  .-..+ ......+..++.++ ++.+
T Consensus       188 --~~~v~~g~~~g~l~~~d~~tG~~------------~w~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~v~~~~~~g~l  251 (376)
T 3q7m_A          188 --FGAAVVGGDNGRVSAVLMEQGQM------------IWQQRISQATGSTEID--RLSDVDTTPVVVNGVVFALAYNGNL  251 (376)
T ss_dssp             --TTEEEECCTTTEEEEEETTTCCE------------EEEEECCC-------------CCCCCCEEETTEEEEECTTSCE
T ss_pred             --CCEEEEEcCCCEEEEEECCCCcE------------EEEEecccCCCCcccc--cccccCCCcEEECCEEEEEecCcEE
Confidence              34677788889898886643321            11111000000 0000  00001 11122366777777 8999


Q ss_pred             EEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeC
Q 005342          528 SIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGA  606 (701)
Q Consensus       528 ~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~~l~s~s~  606 (701)
                      ..+|..+++.+.....  .....+... ++.+++++.++.++.+|..+++.+..... ....+.....  .+..|+.++.
T Consensus       252 ~~~d~~tG~~~w~~~~--~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~  326 (376)
T 3q7m_A          252 TALDLRSGQIMWKREL--GSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDS  326 (376)
T ss_dssp             EEEETTTCCEEEEECC--CCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred             EEEECCCCcEEeeccC--CCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence            9999999998877652  234444443 22788888999999999999988766652 2222233333  3467888999


Q ss_pred             CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeE-EEEEcCCCCEEEEEecCeEEEEE
Q 005342          607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN-HIQFHPDQIHLLSIHEGQIDVYE  664 (701)
Q Consensus       607 D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~-~v~~spdg~~l~sg~Dg~I~iwd  664 (701)
                      +|.++++|..+|+......+.    +     ..+. .... .++.+++.+.+|.|+.|+
T Consensus       327 ~g~l~~~d~~tG~~~~~~~~~----~-----~~~~~~~~~-~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          327 EGYLHWINVEDGRFVAQQKVD----S-----SGFQTEPVA-ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECC----T-----TCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEecC----C-----CcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence            999999999999754333221    1     1111 1111 245444445789998887

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.85  E-value=1.8e-06  Score=98.40  Aligned_cols=141  Identities=12%  Similarity=0.030  Sum_probs=99.7

Q ss_pred             eEEEEeCCCCcEEEEecCCC---------CCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCCC------
Q 005342          526 KISIFSLETFQTLATFANPP---------PIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQ------  586 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~~~~---------~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~------  586 (701)
                      .|..+|..+|+.+..++...         .....+....+|    .+++++.+|.++++|..+|+.+..+....      
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            59999999999998876321         112222333355    68889999999999999999876554211      


Q ss_pred             ----C-Ce------------------------EEEEEecCCCEEEEEeC-------------------------------
Q 005342          587 ----N-RI------------------------TCLAYSLSLNVLVSSGA-------------------------------  606 (701)
Q Consensus       587 ----~-~V------------------------~~v~~spdg~~l~s~s~-------------------------------  606 (701)
                          + ++                        ..++++|++.++++.+.                               
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                0 01                        15688998887776543                               


Q ss_pred             ------------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeee
Q 005342          607 ------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ  673 (701)
Q Consensus       607 ------------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~  673 (701)
                                  .+.|..||+.+|+..-.....          .++.+..++.++..++++ .||.+++||..+|+.+.+
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~  513 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE  513 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCCC----------CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence                        278999999999754433222          334445566777777776 799999999999999998


Q ss_pred             eee
Q 005342          674 VLL  676 (701)
Q Consensus       674 l~~  676 (701)
                      +..
T Consensus       514 ~~~  516 (677)
T 1kb0_A          514 APT  516 (677)
T ss_dssp             EEC
T ss_pred             eeC
Confidence            874

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.82  E-value=8.6e-10  Score=116.42  Aligned_cols=185  Identities=10%  Similarity=0.035  Sum_probs=99.2

Q ss_pred             CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEE
Q 005342          452 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS  528 (701)
Q Consensus       452 dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~  528 (701)
                      ++..+++++.||.+..||.                     .+|+..-. +. .  ..+.+..+.  +..+++++ ||.|+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~---------------------~tG~~~W~-~~-~--~~~~s~p~~~~g~~~v~~s~dg~l~   62 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSK---------------------RTGSIKWT-LK-E--DPVLQVPTHVEEPAFLPDPNDGSLY   62 (369)
T ss_dssp             CTTEEEEEETTSEEEEEET---------------------TTCCEEEE-EE-C--CCSCCCC-----CCEEECTTTCCEE
T ss_pred             eCCEEEEEcCCCEEEEEEC---------------------CCCCEEEE-ec-C--CCceecceEcCCCEEEEeCCCCEEE
Confidence            5678999999999999965                     44443321 11 1  222222222  55677766 99999


Q ss_pred             EEeCCCCcEEEEecCCCCC-e-EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC
Q 005342          529 IFSLETFQTLATFANPPPI-A-TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA  606 (701)
Q Consensus       529 iwd~~~~~~~~~~~~~~~~-i-~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~  606 (701)
                      .||.++|+.+..+..+... + .+..+..++.+++|+.|+.++.||..+|+.+..+..+.    ...++|++..+++++.
T Consensus        63 a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~  138 (369)
T 2hz6_A           63 TLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT  138 (369)
T ss_dssp             EC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE
T ss_pred             EEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec
Confidence            9999999887766533111 1 01111123377788899999999999999888776553    2355678888999999


Q ss_pred             CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC----CCEEEEEecCeEEEEECCCCceeeeeee
Q 005342          607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD----QIHLLSIHEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       607 D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd----g~~l~sg~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      |+.|+.||.++|+.........           .....++++    +..++.+.||.++.||..+|+.+.....
T Consensus       139 dg~v~a~d~~tG~~~W~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  201 (369)
T 2hz6_A          139 EYTITMYDTKTRELRWNATYFD-----------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY  201 (369)
T ss_dssp             EEEEECCCSSSSSCCCEEEEEE-----------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred             CCEEEEEECCCCCEEEeEeccc-----------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence            9999999999987543322220           111223332    4555556899999999999998776653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.81  E-value=1.3e-06  Score=99.60  Aligned_cols=309  Identities=10%  Similarity=0.040  Sum_probs=172.0

Q ss_pred             CcccccccCccceeEEEeecCcce---------eeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCC-
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWW---------VPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQE-  371 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v---------~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~-  371 (701)
                      +.|.-+|..+|+.+...+.+....         ....+....+     +.|+.+..+|..+|+.+-..        ... 
T Consensus        80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~--------~~~~  151 (689)
T 1yiq_A           80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSV--------DTRA  151 (689)
T ss_dssp             GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE--------ECCS
T ss_pred             CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeee--------cCcC
Confidence            556778888999998876543210         0001223333     67899999999999876552        000 


Q ss_pred             CCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc-----CCCcEEEEeccccCCCCce-eEeec-CCC------
Q 005342          372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK-----SLEKSVNLKLQLINEPSEC-RTLLL-PDN------  438 (701)
Q Consensus       372 ~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s-----~d~~v~iw~~~~~~~~~~~-~~l~~-~~~------  438 (701)
                      ....          . .  ....  +... .++..++..+     .++.|..||..    +|+. +.+.. +..      
T Consensus       152 ~~~~----------~-~--~~~~--sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~----tG~~~W~~~~~~~~p~~~~~  211 (689)
T 1yiq_A          152 DHKR----------S-Y--TITG--APRV-VNGKVVIGNGGAEFGVRGYVTAYDAE----TGKEAWRFYTVPGDPKLPPE  211 (689)
T ss_dssp             CTTS----------C-C--BCCS--CCEE-ETTEEEECCBCTTTCCBCEEEEEETT----TCCEEEEEESSCCCTTSCCC
T ss_pred             CCCC----------C-c--cccC--CcEE-ECCEEEEEeCCCccCCCCEEEEEECC----CCcEEEEecccCCCcccccc
Confidence            0000          0 0  0000  0001 1444333322     36889999987    5543 33321 100      


Q ss_pred             --------------------CCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342          439 --------------------SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT  498 (701)
Q Consensus       439 --------------------~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~  498 (701)
                                          ++......++++|++..++.++.++..  |.........|.......+..+|+.+|+.+-
T Consensus       212 ~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~--w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W  289 (689)
T 1yiq_A          212 GKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSL--WDPKWRSQAKGDNLFLSSIVAVNADTGEYVW  289 (689)
T ss_dssp             SHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHHTTCSCCTTTTEEEEEETTTCCEEE
T ss_pred             cccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCc--cccCCCCCCCCCceeeeeEEEEEccCCceeE
Confidence                                000111257888988888888877652  3210000001111111235566778877542


Q ss_pred             ecccCCCC-------CCeE--EEEecCC---EEEEEe-CCeEEEEeCCCCcEEEEecCCC-C------------------
Q 005342          499 NDIAADPK-------DSIS--CFALRGS---HLFSAS-GGKISIFSLETFQTLATFANPP-P------------------  546 (701)
Q Consensus       499 ~~~~~~~~-------~~v~--~l~~s~~---~l~s~s-dg~I~iwd~~~~~~~~~~~~~~-~------------------  546 (701)
                      ..-...|.       .++.  .+.+.|+   .++.++ +|.++++|..+|+.+....... .                  
T Consensus       290 ~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~  369 (689)
T 1yiq_A          290 HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEEN  369 (689)
T ss_dssp             EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHH
T ss_pred             eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhh
Confidence            21101121       1111  2222343   677788 8999999999999874432110 0                  


Q ss_pred             --------------------CeEEEEEcCCC-eEEEEeC-----------------------------------------
Q 005342          547 --------------------IATYFILLPQD-LFAFGFD-----------------------------------------  564 (701)
Q Consensus       547 --------------------~i~~l~~spdg-~l~~gs~-----------------------------------------  564 (701)
                                          .-..++++|+. .+++++.                                         
T Consensus       370 ~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~  449 (689)
T 1yiq_A          370 AAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEM  449 (689)
T ss_dssp             HCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHH
T ss_pred             ccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCC
Confidence                                01237889987 6665432                                         


Q ss_pred             ----CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342          565 ----DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV  640 (701)
Q Consensus       565 ----dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v  640 (701)
                          +|.|+.||+.+++.+-.+..+. ++....+...+.+++.++.|+.++.||.++|+.+....+     +..   ...
T Consensus       450 ~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~-----~~~---~~~  520 (689)
T 1yiq_A          450 AKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA-----ASG---VMA  520 (689)
T ss_dssp             HTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-----SSC---CCS
T ss_pred             CCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC-----CCC---ccc
Confidence                3779999999999988776443 344446667788999999999999999999975533222     221   222


Q ss_pred             EEEEEcCCCCEEEE
Q 005342          641 NHIQFHPDQIHLLS  654 (701)
Q Consensus       641 ~~v~~spdg~~l~s  654 (701)
                      .-+.|..+|+..++
T Consensus       521 ~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          521 APVTYSVDGEQYVT  534 (689)
T ss_dssp             CCEEEEETTEEEEE
T ss_pred             CceEEEECCEEEEE
Confidence            34667889876554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.78  E-value=1.7e-09  Score=114.21  Aligned_cols=219  Identities=9%  Similarity=-0.025  Sum_probs=113.9

Q ss_pred             CCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342          403 DADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN  481 (701)
Q Consensus       403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~  481 (701)
                      ++..+++++.|+.|..||..    +|+. +.+..      +.+.+..+.+++..+++++.||.++.||..+         
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~----tG~~~W~~~~------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t---------   68 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKR----TGSIKWTLKE------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN---------   68 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETT----TCCEEEEEEC------CCSCCCC-----CCEEECTTTCCEEEC-------------
T ss_pred             eCCEEEEEcCCCEEEEEECC----CCCEEEEecC------CCceecceEcCCCEEEEeCCCCEEEEEECCC---------
Confidence            57789999999999999987    5543 33322      2344444556787777778899999997633         


Q ss_pred             cceeeEEeeCCCCeEEeecccCCCCCCe-EEEEe-cCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-
Q 005342          482 VNMESQLYQPSSKLVMTNDIAADPKDSI-SCFAL-RGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-  557 (701)
Q Consensus       482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v-~~l~~-s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-  557 (701)
                                  |+.+.. +.......+ .+..+ .+..+++++ ++.++.||.++|+.+..+..+.    ...++|++ 
T Consensus        69 ------------G~~~w~-~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~  131 (369)
T 2hz6_A           69 ------------NEGLTK-LPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTS  131 (369)
T ss_dssp             -------------CCSEE-CSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC-------------------------
T ss_pred             ------------Cceeee-eeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCC
Confidence                        321110 000000000 01112 245667777 8999999999999988876543    23456777 


Q ss_pred             eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC---CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCC
Q 005342          558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV  634 (701)
Q Consensus       558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg---~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~  634 (701)
                      .+++++.|+.|+.||.++|+.+..+..+.  ....+++++.   ..+++++.||.|+.||..+|+..-...+.       
T Consensus       132 ~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-------  202 (369)
T 2hz6_A          132 LLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-------  202 (369)
T ss_dssp             -EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-------
T ss_pred             EEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-------
Confidence            88999999999999999998766554221  1222333332   45677899999999999999754322211       


Q ss_pred             CCCCCeE-EEEEcCCCCEEEE---EecCeEEEEECCCCc
Q 005342          635 PETTIVN-HIQFHPDQIHLLS---IHEGQIDVYEAPTLN  669 (701)
Q Consensus       635 ~~~~~v~-~v~~spdg~~l~s---g~Dg~I~iwd~~~g~  669 (701)
                         .++. ...++++|...+.   ..++.++.+|..+|+
T Consensus       203 ---~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~  238 (369)
T 2hz6_A          203 ---SPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGE  238 (369)
T ss_dssp             ---SCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred             ---CceEEEEEecCCceEeccceeecccceeeeehhcCC
Confidence               3443 3456667754211   123445555554444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.78  E-value=1.1e-05  Score=80.39  Aligned_cols=210  Identities=10%  Similarity=-0.028  Sum_probs=132.0

Q ss_pred             CCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE
Q 005342          442 GRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  518 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~  518 (701)
                      ..+.+++|++++..|+.+.. ++.|..++..+                     +..... + .........++++  +..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g---------------------~~~~~~-~-~~~~~~p~~ia~d~~~~~   92 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHG---------------------GEPTTI-I-RQDLGSPEGIALDHLGRT   92 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSS---------------------CCCEEE-E-CTTCCCEEEEEEETTTTE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCC---------------------CCcEEE-E-ECCCCCccEEEEEecCCe
Confidence            45789999998777766655 67888886532                     221110 1 1122457788887  566


Q ss_pred             EEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCceEEeec-CCCCCeEE
Q 005342          519 LFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLK-GHQNRITC  591 (701)
Q Consensus       519 l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~---dg~I~iwd~~~~~~~~~l~-~h~~~V~~  591 (701)
                      ++.+.  .+.|.++|...................++++|++ .++.+..   .+.|..+++... ....+. ..-...+.
T Consensus        93 lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~g  171 (267)
T 1npe_A           93 IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNG  171 (267)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEE
T ss_pred             EEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcE
Confidence            66665  6899999986433222222222456899999965 4444333   468988887643 223222 22346789


Q ss_pred             EEEecCCCEE-EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCC
Q 005342          592 LAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL  668 (701)
Q Consensus       592 v~~spdg~~l-~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g  668 (701)
                      ++++|++..| ++....+.|.++|...+...  ..+.   ..     .....++..  +..++. . ..+.|.++|..+|
T Consensus       172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--~~~~---~~-----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--KVLE---GL-----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEE--EEEE---CC-----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEecCCCceE--EEec---CC-----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence            9999987655 45556789999999864311  1111   11     233566654  455555 4 5689999999999


Q ss_pred             ceeeeeee-----eeEEEEEeeEE
Q 005342          669 NHTSQVLL-----ISHIMFVQIVV  687 (701)
Q Consensus       669 ~~~~~l~~-----i~~~~fs~~~~  687 (701)
                      +.+.+++.     ..+++++|..+
T Consensus       240 ~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          240 KEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CceEEEccccccccceeeecCccC
Confidence            99888864     56788877654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.76  E-value=1e-07  Score=98.17  Aligned_cols=228  Identities=9%  Similarity=-0.028  Sum_probs=138.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      +.++...++|... .++.+  +..+|..    ....+....    ...........  +..+..++.++.+..+|.    
T Consensus        62 ~~~~~~~~~g~l~-v~t~~--l~~~d~~----g~~~~~~~~----~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~----  124 (330)
T 3hxj_A           62 ECRPSIGKDGTIY-FGSDK--VYAINPD----GTEKWRFDT----KKAIVSDFTIF--EDILYVTSMDGHLYAINT----  124 (330)
T ss_dssp             EECCEETTTTEEC-CSSCE--EEEECCC----GGGGGGSCC---------CCEEEE--TTEEEEECTTSEEEEECT----
T ss_pred             ccceEEecCCcEE-EecCc--EEEECCC----CcEEEEEEC----CCCcccCceEE--CCEEEEEecCCEEEEEcC----
Confidence            5667777776544 44444  7777753    222222111    11112222233  445777888888888854    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI  552 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~  552 (701)
                                       . ++.... . ..+...+.++... +..+..++ ++.|..+|.. ++....+......+.++.
T Consensus       125 -----------------~-g~~~~~-~-~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          125 -----------------D-GTEKWR-F-KTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             -----------------T-SCEEEE-E-ECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             -----------------C-CCEEEE-E-cCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence                             3 332211 1 1122334455566 55566677 7999999998 888777765566677888


Q ss_pred             EcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCC
Q 005342          553 LLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG  632 (701)
Q Consensus       553 ~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~  632 (701)
                      ..++|.+.+++  +.|+.+| .+++....+......+.++...++|.+ ..++.++.+..+|. +++...  ...   .+
T Consensus       184 ~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~--~~~---~~  253 (330)
T 3hxj_A          184 IGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKW--RFK---TG  253 (330)
T ss_dssp             ECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEE--EEE---CS
T ss_pred             EcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeE--Eee---CC
Confidence            88888444455  8899999 777777666655567888888888864 44677888998885 443321  111   11


Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee
Q 005342          633 LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       633 ~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      .    ..+.++.+.+++.+.+.+.+|.|..+|. +|+.+..+.
T Consensus       254 ~----~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~  291 (330)
T 3hxj_A          254 K----RIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFE  291 (330)
T ss_dssp             S----CCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred             C----CccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEE
Confidence            1    2233455666777666567889999996 777666554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.76  E-value=2e-06  Score=90.44  Aligned_cols=199  Identities=14%  Similarity=0.094  Sum_probs=128.8

Q ss_pred             Ee--cCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc------CCCCCCeEEEEec-CCE
Q 005342          449 YS--HSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA------ADPKDSISCFALR-GSH  518 (701)
Q Consensus       449 ~s--pdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~v~~l~~s-~~~  518 (701)
                      ++  ++++++++.+. ++.|.++|+.+.                 +..-++... +.      +........+..+ +..
T Consensus        89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~-----------------p~~p~~~k~-ie~~~~~~~~g~s~Ph~~~~~pdGi  150 (462)
T 2ece_A           89 GKPNIERRFLIVPGLRSSRIYIIDTKPN-----------------PREPKIIKV-IEPEEVKKVSGYSRLHTVHCGPDAI  150 (462)
T ss_dssp             CCTTCCSCEEEEEBTTTCCEEEEECCSC-----------------TTSCEEEEE-ECHHHHHHHHCEEEEEEEEECSSCE
T ss_pred             cCCCccCCEEEEccCCCCeEEEEECCCC-----------------CCCceeeee-echhhcccccCCCcccceeECCCeE
Confidence            36  88888877666 789999987542                 111122211 10      0001123345555 335


Q ss_pred             EEEEe-C------CeEEEEeCCCCcEEEEecCCC---CCeEEEEEcCCC-eEEEEe-------------------CCCcE
Q 005342          519 LFSAS-G------GKISIFSLETFQTLATFANPP---PIATYFILLPQD-LFAFGF-------------------DDSSI  568 (701)
Q Consensus       519 l~s~s-d------g~I~iwd~~~~~~~~~~~~~~---~~i~~l~~spdg-~l~~gs-------------------~dg~I  568 (701)
                      ++++. +      |.|.++|.++++.+.++....   ..-..+.|+|++ .+++..                   .+.+|
T Consensus       151 ~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V  230 (462)
T 2ece_A          151 YISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRI  230 (462)
T ss_dssp             EEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred             EEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEE
Confidence            55544 4      789999999999999886322   223568899999 777663                   36799


Q ss_pred             EEEeCCCCceEEeecCC-C-CCeEEEEE--ecCCCEEEEEe------CCCeEEEEECCCCeeeeeeeeeeccCCC----C
Q 005342          569 LVHCPCTKKTKAKLKGH-Q-NRITCLAY--SLSLNVLVSSG------ADAQLCVWDAVGWKKLCSKFLHSFQTGL----V  634 (701)
Q Consensus       569 ~iwd~~~~~~~~~l~~h-~-~~V~~v~~--spdg~~l~s~s------~D~~I~vwd~~~g~~~~~~~l~~~~~~~----~  634 (701)
                      .+||+.+++.++++.-. . .....+.|  +|+++++..++      .+++|.+|....|.......+. +....    .
T Consensus       231 ~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId-i~~~~v~~~l  309 (462)
T 2ece_A          231 HFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE-IPAEPLEGNL  309 (462)
T ss_dssp             EEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE-ECCEECCSSC
T ss_pred             EEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe-CCCccccccc
Confidence            99999999888887642 1 23445555  99999877666      5678988887766433333322 21110    0


Q ss_pred             C--------CCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC
Q 005342          635 P--------ETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP  666 (701)
Q Consensus       635 ~--------~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~  666 (701)
                      +        .......|.+||||++|.++  ..+.|.+||+.
T Consensus       310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            0        01446789999999999987  47899999985

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.74  E-value=4.7e-06  Score=87.67  Aligned_cols=225  Identities=8%  Similarity=-0.039  Sum_probs=136.0

Q ss_pred             CCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342          403 DADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN  481 (701)
Q Consensus       403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~  481 (701)
                      ++..++.++.++.+..+|..    +++. +...........++    . . +..+++++.++.+..+|.           
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~----tG~~~W~~~~~~~~~~~p~----~-~-~~~v~v~~~~g~l~~~d~-----------  160 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTS----DGTVAWQTKVAGEALSRPV----V-S-DGLVLIHTSNGQLQALNE-----------  160 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETT----TCCEEEEEECSSCCCSCCE----E-E-TTEEEEECTTSEEEEEET-----------
T ss_pred             eCCEEEEEcCCCEEEEEECC----CCCEEEEEeCCCceEcCCE----E-E-CCEEEEEcCCCeEEEEEC-----------
Confidence            45677788888999999987    5543 34333111111111    1 1 446788888998888865           


Q ss_pred             cceeeEEeeCCCCeEEeecccCCCCCCe------EEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC-------
Q 005342          482 VNMESQLYQPSSKLVMTNDIAADPKDSI------SCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPI-------  547 (701)
Q Consensus       482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v------~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~-------  547 (701)
                                .+|+..-. ..  ....+      ......+..++.++ ++.+..+|..+++.+.........       
T Consensus       161 ----------~tG~~~W~-~~--~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  227 (376)
T 3q7m_A          161 ----------ADGAVKWT-VN--LDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR  227 (376)
T ss_dssp             ----------TTCCEEEE-EE--CCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC---------
T ss_pred             ----------CCCcEEEE-Ee--CCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccc
Confidence                      34432211 00  00111      12223356677777 899999999999988776532110       


Q ss_pred             ---e-EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342          548 ---A-TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       548 ---i-~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                         + ...... ++.+++++.++.++.+|..+++.+.....  .....+..  ++..++.++.++.++.+|..+|+..-.
T Consensus       228 ~~~~~~~p~~~-~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~  302 (376)
T 3q7m_A          228 LSDVDTTPVVV-NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT  302 (376)
T ss_dssp             --CCCCCCEEE-TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             ccccCCCcEEE-CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe
Confidence               1 111111 23777888899999999999988766542  23444443  466788888899999999999864322


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ..   .. +.    ..+.....  .+..|+++ .+|.+..+|..+|+.+.....
T Consensus       303 ~~---~~-~~----~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          303 QS---DL-LH----RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             EC---TT-TT----SCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ec---cc-CC----CcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            11   00 11    11222222  23455555 789999999999998776653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.69  E-value=5.6e-07  Score=93.97  Aligned_cols=252  Identities=6%  Similarity=-0.119  Sum_probs=153.4

Q ss_pred             cccccccCccceeEEEeecCcceeeeEEEEccC------C-----------CCCeEEEEeccCCccccccccccCCCCCC
Q 005342          308 KLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------A-----------NNETISLKDFPTVSNLRYASSILTDKPNQ  370 (701)
Q Consensus       308 ~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s-----------~d~~i~lWd~~~~~~~~~~~~~~~~~~~~  370 (701)
                      .|.+.|.++++.+.++.....    |.+.|+||      +           .+++|.+||..+++....+       . +
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~----P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I-------~-v  114 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFL----SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI-------E-L  114 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT----CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE-------E-E
T ss_pred             eEEEEECCCCeEEEEEeCCCC----CceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEE-------E-C
Confidence            566899999999999875443    27999999      2           2689999999999987773       0 1


Q ss_pred             CCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcC--CCcEEE--EeccccCCCCceeEeecCCCCCCCCEEE
Q 005342          371 EGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS--LEKSVN--LKLQLINEPSECRTLLLPDNSFGGRVVR  446 (701)
Q Consensus       371 ~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~--d~~v~i--w~~~~~~~~~~~~~l~~~~~~~~~~v~~  446 (701)
                      .+...            .+.+ .....++++|||++++.+..  +..+.+  +|..    +  ...+..+     +.   
T Consensus       115 ~~~~~------------~~~g-~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~----t--v~~i~v~-----~~---  167 (368)
T 1mda_H          115 PDAPR------------FSVG-PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS----D--DQLTKSA-----SC---  167 (368)
T ss_dssp             TTSCS------------CCBS-CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE----E--EEEEECS-----SC---
T ss_pred             CCccc------------cccC-CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchh----h--ceEEECC-----Cc---
Confidence            10000            0000 01235899999999998864  467888  8886    2  2333321     11   


Q ss_pred             EEEecCCC-EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe---ecccCCCCCCeEEEEec-C-CEEE
Q 005342          447 LIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT---NDIAADPKDSISCFALR-G-SHLF  520 (701)
Q Consensus       447 l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~v~~l~~s-~-~~l~  520 (701)
                      ....|+|+ .+++.+.||.+.+.+..+....                .++...   ..+.. ...+.   +.. + .+++
T Consensus       168 ~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~----------------~~~v~~~~t~~i~v-g~~P~---~~~~~~~~~~  227 (368)
T 1mda_H          168 FHIHPGAAATHYLGSCPASLAASDLAAAPAA----------------AGIVGAQCTGAQNC-SSQAA---QANYPGMLVW  227 (368)
T ss_dssp             CCCEEEETTEEECCCCTTSCEEEECCSSCCC----------------CEECCCCSCTTSCB-CSCCE---EETTTTEEEE
T ss_pred             eEEccCCCeEEEEEcCCCCEEEEECcccccc----------------CCeEEEEeeeeeeC-CCCcc---ccccCCEEEE
Confidence            12345554 3445566888877765331000                011110   00101 12232   233 4 3444


Q ss_pred             EEeCCeEEEEeCCCCc--EEEEecCC----------CCCeEEEEEcCCC-eEEEEeC---------CCcEEEEeCCCCce
Q 005342          521 SASGGKISIFSLETFQ--TLATFANP----------PPIATYFILLPQD-LFAFGFD---------DSSILVHCPCTKKT  578 (701)
Q Consensus       521 s~sdg~I~iwd~~~~~--~~~~~~~~----------~~~i~~l~~spdg-~l~~gs~---------dg~I~iwd~~~~~~  578 (701)
                      +.. +.+.+.|..+..  .+..+...          ......++++||+ .++++..         ++.+.++|..+++.
T Consensus       228 vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v  306 (368)
T 1mda_H          228 AVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT  306 (368)
T ss_dssp             CBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE
T ss_pred             EcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE
Confidence            444 889999986532  22222110          1112237899999 5555432         23566999999999


Q ss_pred             EEeecCCCCCeEEEEEecCCC-EEEEEe-CCCeEEEEECCCCee
Q 005342          579 KAKLKGHQNRITCLAYSLSLN-VLVSSG-ADAQLCVWDAVGWKK  620 (701)
Q Consensus       579 ~~~l~~h~~~V~~v~~spdg~-~l~s~s-~D~~I~vwd~~~g~~  620 (701)
                      +.++.... ....++|+|||+ .+++.. .+++|.++|+.+++.
T Consensus       307 v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          307 SGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             EEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence            99887543 588999999998 566677 599999999999753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.68  E-value=4.3e-06  Score=81.56  Aligned_cols=188  Identities=9%  Similarity=0.047  Sum_probs=122.9

Q ss_pred             CCCEEEEEEecCCCEEEEEECCC--cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCE
Q 005342          441 GGRVVRLIYSHSGDFLVALTQTA--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH  518 (701)
Q Consensus       441 ~~~v~~l~~spdg~~l~s~s~dg--~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~  518 (701)
                      ..-...+.|+ ++....+.+.+|  .|+++                     |+.++++.... .-.....--.++..++.
T Consensus        42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~v---------------------D~~Tgkv~~~~-~l~~~~FgeGit~~g~~   98 (262)
T 3nol_A           42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKV---------------------DIESGKTLQQI-ELGKRYFGEGISDWKDK   98 (262)
T ss_dssp             TCEEEEEEEE-TTEEEEEEEETTEEEEEEE---------------------CTTTCCEEEEE-ECCTTCCEEEEEEETTE
T ss_pred             CcccceEEEE-CCEEEEECCCCCCceEEEE---------------------ECCCCcEEEEE-ecCCccceeEEEEeCCE
Confidence            3446888998 676666666666  77777                     55777755432 11111122345556666


Q ss_pred             EEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC--C---CCeE
Q 005342          519 LFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--Q---NRIT  590 (701)
Q Consensus       519 l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h--~---~~V~  590 (701)
                      |....  ++.+.+||.++++.+.++......   ..+++|+ .++.+..++.|+++|..+.+.+.++.-.  .   ..++
T Consensus        99 ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A           99 IVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN  175 (262)
T ss_dssp             EEEEESSSSEEEEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred             EEEEEeeCCEEEEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence            66666  799999999999999998754322   2334567 6665556788999999999888876542  1   3456


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCC---CCCCCCCeEEEEEcCCCCEEEE-E
Q 005342          591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG---LVPETTIVNHIQFHPDQIHLLS-I  655 (701)
Q Consensus       591 ~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~---~~~~~~~v~~v~~spdg~~l~s-g  655 (701)
                      .+.|. +|+..|..-.++.|.+.|.++|+....-.+..+...   ..+.....+.|+|+|+++.|.+ |
T Consensus       176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            67886 777666665788999999999975543333212111   0111245699999998776665 5

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.67  E-value=1.3e-06  Score=85.16  Aligned_cols=171  Identities=12%  Similarity=0.088  Sum_probs=118.6

Q ss_pred             CCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeE--EEEEcCCCeEEEEeCCCcEEEEeCCCCceEE
Q 005342          505 PKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKA  580 (701)
Q Consensus       505 ~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~--~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~  580 (701)
                      .......+.++ +....+.+ +|.|+++|+++++.+..+ -. ....  .+++..+....+...++.+.+||..+.+.+.
T Consensus        53 ~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           53 TNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             TTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             CccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEE
Confidence            34456788888 44444555 789999999999988877 22 2333  3555433344456678899999999999999


Q ss_pred             eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCe
Q 005342          581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ  659 (701)
Q Consensus       581 ~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~  659 (701)
                      ++... ..-..++  +|++.|+.+..+++|.++|..+.+......+..  .+..  -..++.+.|. +|+..+.. .++.
T Consensus       131 ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~--~g~~--v~~lNeLe~~-dG~lyanvw~s~~  202 (268)
T 3nok_A          131 TTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL--RGQP--VELINELECA-NGVIYANIWHSSD  202 (268)
T ss_dssp             EEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE--TTEE--CCCEEEEEEE-TTEEEEEETTCSE
T ss_pred             EEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC--CCcc--cccccccEEe-CCEEEEEECCCCe
Confidence            88753 2223444  677877777778999999999976544333321  1110  0356778887 77655545 5789


Q ss_pred             EEEEECCCCceeeeeee-----------------eeEEEEEee
Q 005342          660 IDVYEAPTLNHTSQVLL-----------------ISHIMFVQI  685 (701)
Q Consensus       660 I~iwd~~~g~~~~~l~~-----------------i~~~~fs~~  685 (701)
                      |.+.|..+|+.+..+..                 .+++||+|.
T Consensus       203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence            99999999999888764                 378999875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.66  E-value=7.9e-06  Score=80.66  Aligned_cols=192  Identities=8%  Similarity=-0.026  Sum_probs=128.7

Q ss_pred             eEEEEEcCCCCeEEEEcC--CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecC
Q 005342          395 SRESTSLPDADSAVCAKS--LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQ  471 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~--d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~  471 (701)
                      ...++|+||+.+.++.+.  ++.|.+.|+.    +++... .++... ......+++  +|+.+..+.. ++.+.++   
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~----tg~v~~-~i~l~~-~~fgeGi~~--~g~~lyv~t~~~~~v~vi---   91 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQ----TGKVEN-IHKMDD-SYFGEGLTL--LNEKLYQVVWLKNIGFIY---   91 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETT----TCCEEE-EEECCT-TCCEEEEEE--ETTEEEEEETTCSEEEEE---
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECC----CCCEEE-EEecCC-CcceEEEEE--eCCEEEEEEecCCEEEEE---
Confidence            467999999766666553  5799999998    665544 212221 122234444  4666666655 7888888   


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCC-----
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPP-----  545 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~-----  545 (701)
                                        |+.+.+.+.. +..+ ...-..++.+|+.++++. ++.|.++|..+.+.+..+....     
T Consensus        92 ------------------D~~t~~v~~~-i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~  151 (266)
T 2iwa_A           92 ------------------DRRTLSNIKN-FTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV  151 (266)
T ss_dssp             ------------------ETTTTEEEEE-EECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             ------------------ECCCCcEEEE-EECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence                              5566665543 3223 122234666666666555 7999999999998888776321     


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC-------------CCCeEEEEEecCCC-EEEEEeCCCeE
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-------------QNRITCLAYSLSLN-VLVSSGADAQL  610 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h-------------~~~V~~v~~spdg~-~l~s~s~D~~I  610 (701)
                      .....+.+. +| ..+....++.|.+.|..+++.+..+.-.             ....+.++|+|+++ +++++...+++
T Consensus       152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v  230 (266)
T 2iwa_A          152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL  230 (266)
T ss_dssp             CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence            135677888 77 5566667889999999999998887631             12568999999886 55667778899


Q ss_pred             EEEECCCC
Q 005342          611 CVWDAVGW  618 (701)
Q Consensus       611 ~vwd~~~g  618 (701)
                      ++.++...
T Consensus       231 ~~i~l~~~  238 (266)
T 2iwa_A          231 FEIKLHLV  238 (266)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecc
Confidence            88887653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.65  E-value=1.5e-06  Score=84.88  Aligned_cols=171  Identities=13%  Similarity=0.063  Sum_probs=116.5

Q ss_pred             CCCeEEEEec-CCEEEEEe-CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE
Q 005342          506 KDSISCFALR-GSHLFSAS-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK  579 (701)
Q Consensus       506 ~~~v~~l~~s-~~~l~s~s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~  579 (701)
                      ......+.|+ +....+++ +|  .|+++|+++++.+..+.... ......+.+++  ...+...++.+.+||..+.+.+
T Consensus        42 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           42 KAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             TCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             CcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence            3445788888 64445555 55  89999999999998886433 33333333344  4444556889999999999999


Q ss_pred             EeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC
Q 005342          580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG  658 (701)
Q Consensus       580 ~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg  658 (701)
                      .++.....   ...+++|++.|+.+..+++|.++|..+.+......+.  ..+...  ..++.+.|. +|+..+.. .++
T Consensus       121 ~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~--~~g~~~--~~lNELe~~-~G~lyan~w~~~  192 (262)
T 3nol_A          121 RSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT--AHGEEL--PELNELEWV-DGEIFANVWQTN  192 (262)
T ss_dssp             EEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE--ETTEEC--CCEEEEEEE-TTEEEEEETTSS
T ss_pred             EEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec--cCCccc--cccceeEEE-CCEEEEEEccCC
Confidence            98874322   2234467776666666789999999997654332222  111110  345678887 77655555 688


Q ss_pred             eEEEEECCCCceeeeeee----------------eeEEEEEee
Q 005342          659 QIDVYEAPTLNHTSQVLL----------------ISHIMFVQI  685 (701)
Q Consensus       659 ~I~iwd~~~g~~~~~l~~----------------i~~~~fs~~  685 (701)
                      .|.+.|..+|+.+..+..                .+++||+|.
T Consensus       193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~  235 (262)
T 3nol_A          193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE  235 (262)
T ss_dssp             EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred             eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence            999999999999887763                378999986

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.65  E-value=0.00025  Score=82.54  Aligned_cols=238  Identities=9%  Similarity=-0.007  Sum_probs=152.2

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCC-----CCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-----~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      |.++...++|.+.+ |+.++.+..|+..    ++....+....     ......|.++...++|+.|..|+.++-+..||
T Consensus       359 V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          359 VSCIVEDKDKNLWI-GTNDGGLNLYNPI----TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             EEEEEECTTSCEEE-EESSSCEEEECTT----TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             eEEEEECCCCCEEE-EECCCCeEEEcCC----CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence            99999998887554 6666778999886    45444433211     11246799999999998566777777788885


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecc--cCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecC---
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDI--AADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFAN---  543 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~---  543 (701)
                      .                     .++++.....  ...+...|.++... ...|..|+.+.+.+||..+++.......   
T Consensus       434 ~---------------------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~  492 (795)
T 4a2l_A          434 R---------------------NSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDG  492 (795)
T ss_dssp             T---------------------TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTC
T ss_pred             C---------------------CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccc
Confidence            4                     3333222100  00124578888888 4445555535588999877654332211   


Q ss_pred             ---CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeec-------CCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342          544 ---PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSLSLNVLVSSGADAQLCVW  613 (701)
Q Consensus       544 ---~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~v~~spdg~~l~s~s~D~~I~vw  613 (701)
                         ....|.++..+++|.+..|+. +-+..||..+++.  .+.       .....|.++...++|.+.++. .. -+..|
T Consensus       493 ~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~  567 (795)
T 4a2l_A          493 TPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCF  567 (795)
T ss_dssp             CBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEE
T ss_pred             cccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeE
Confidence               235689999998884455555 5688899877655  222       133578999999999865543 33 58899


Q ss_pred             ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce
Q 005342          614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH  670 (701)
Q Consensus       614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~  670 (701)
                      |..+++.   ..+. ...+-.  ...|.++...++|++.+++ ++.|..||..+++.
T Consensus       568 d~~~~~~---~~~~-~~~gl~--~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~  617 (795)
T 4a2l_A          568 NEKDKQI---KRYN-TTNGLP--NNVVYGILEDSFGRLWLST-NRGISCFNPETEKF  617 (795)
T ss_dssp             ETTTTEE---EEEC-GGGTCS--CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEE
T ss_pred             CCCCCcE---EEeC-CCCCCc--hhheEEEEECCCCCEEEEc-CCceEEEcCCCCcE
Confidence            9887642   2222 222221  1568999999999876665 56688889876653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.61  E-value=0.00013  Score=84.92  Aligned_cols=241  Identities=11%  Similarity=0.019  Sum_probs=151.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeec-C--CCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL-P--DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ  471 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~-~--~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  471 (701)
                      |.++...++|... .|+.++.|..++..    .+....+.. +  ..-....|.++...++|. |-.|+.++-+..|+. 
T Consensus       312 i~~i~~D~~g~lW-igt~~~Gl~~~~~~----~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~-  384 (795)
T 4a2l_A          312 VRSIFMDSQGGMW-LGTYFGGLNYYHPI----RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNP-  384 (795)
T ss_dssp             EEEEEECTTSCEE-EEESSSCEEEECGG----GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECT-
T ss_pred             EEEEEEeCCcCEE-EEECCCCeEEeCCC----cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcC-
Confidence            9999999998755 45566778888875    333332221 1  111346799999999887 556777777888854 


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccC------CCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAA------DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA  542 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~  542 (701)
                                          .++.+.......      -....|.++..+  |..|..|+ ++.+..||..+++...-..
T Consensus       385 --------------------~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~  444 (795)
T 4a2l_A          385 --------------------ITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ  444 (795)
T ss_dssp             --------------------TTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT
T ss_pred             --------------------CCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec
Confidence                                333322110000      123578888887  55377777 7889999998876443221


Q ss_pred             ----CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC------CCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342          543 ----NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG------HQNRITCLAYSLSLNVLVSSGADAQLCV  612 (701)
Q Consensus       543 ----~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~------h~~~V~~v~~spdg~~l~s~s~D~~I~v  612 (701)
                          .....|.++...++|.|..|+. +-+.+||..+++.......      ....|.++...++|.+.+.. . +-+..
T Consensus       445 ~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~  521 (795)
T 4a2l_A          445 RNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSV  521 (795)
T ss_dssp             TTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEE
T ss_pred             CCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEE
Confidence                1245689999988884555555 4589999887755432211      23578999999999866544 3 45889


Q ss_pred             EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce
Q 005342          613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH  670 (701)
Q Consensus       613 wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~  670 (701)
                      ||..++..    .+.............|.++...++|.+.+++.. .+..||..+++.
T Consensus       522 ~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~  574 (795)
T 4a2l_A          522 FKQEGLDI----QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQI  574 (795)
T ss_dssp             EEEETTEE----EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEE
T ss_pred             EeCCCCeE----EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcE
Confidence            99887642    111000000011257899999999987665544 688899876654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.61  E-value=4.8e-06  Score=87.52  Aligned_cols=230  Identities=11%  Similarity=0.008  Sum_probs=136.3

Q ss_pred             CCCCeEEE-EcCCCcEEEEeccccCCCCceeEeecCC----CCCCCCEEEEEEecCCCEEEEEECC------CcEEEEec
Q 005342          402 PDADSAVC-AKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALTQT------ATHKLWKW  470 (701)
Q Consensus       402 pdg~~l~s-~s~d~~v~iw~~~~~~~~~~~~~l~~~~----~~~~~~v~~l~~spdg~~l~s~s~d------g~i~vwd~  470 (701)
                      +++++|+. |..++.|.++|+.+.+..-+..+..-+.    ......-..+..+|+| .++++..+      |.+.+.  
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vl--  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILML--  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEE--
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEE--
Confidence            77887765 5577899999986322211222211000    0011234567788999 66665555      567666  


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccC-CCCCCeEEEEec--CCEEEEEe--------------------CCeE
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFALR--GSHLFSAS--------------------GGKI  527 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~v~~l~~s--~~~l~s~s--------------------dg~I  527 (701)
                                         |..+++++.+.-.. +....-..+.|+  ++.+++..                    +.+|
T Consensus       170 -------------------D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V  230 (462)
T 2ece_A          170 -------------------DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRI  230 (462)
T ss_dssp             -------------------CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred             -------------------ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEE
Confidence                               55666655442111 111223356677  66777763                    6899


Q ss_pred             EEEeCCCCcEEEEecCCC--CCeEEEEE--cCCC-eEEEEe------CCCcEEEEeCCCCce--EEee--cC--------
Q 005342          528 SIFSLETFQTLATFANPP--PIATYFIL--LPQD-LFAFGF------DDSSILVHCPCTKKT--KAKL--KG--------  584 (701)
Q Consensus       528 ~iwd~~~~~~~~~~~~~~--~~i~~l~~--spdg-~l~~gs------~dg~I~iwd~~~~~~--~~~l--~~--------  584 (701)
                      .+||+.+++.+.++....  .....+.|  +|++ ++.+++      .+++|.+|....++.  .+.+  ..        
T Consensus       231 ~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp  310 (462)
T 2ece_A          231 HFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLP  310 (462)
T ss_dssp             EEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCC
T ss_pred             EEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccc
Confidence            999999998888887431  23455555  9999 655555      566887766544321  1111  10        


Q ss_pred             --------CCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC-eeeeeeeeeeccCCCC----------CCCCCeEEEE
Q 005342          585 --------HQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGW-KKLCSKFLHSFQTGLV----------PETTIVNHIQ  644 (701)
Q Consensus       585 --------h~~~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~g-~~~~~~~l~~~~~~~~----------~~~~~v~~v~  644 (701)
                              -......+.+||||++|..+.. .+.|.+||+... ..   +.+..+..|..          +..+.-..++
T Consensus       311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~---~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~  387 (462)
T 2ece_A          311 EILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP---VLTGKVKLGGIFHRADHPAGHKLTGAPQMLE  387 (462)
T ss_dssp             GGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC---EEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred             ccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc---EEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence                    0234788999999998876554 789999998632 22   22222333300          0001357899


Q ss_pred             EcCCCCEEEEEe
Q 005342          645 FHPDQIHLLSIH  656 (701)
Q Consensus       645 ~spdg~~l~sg~  656 (701)
                      ++|||++|+++.
T Consensus       388 lSpDGk~LyVaN  399 (462)
T 2ece_A          388 ISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSSEEEEEC
T ss_pred             EcCCCCEEEEEc
Confidence            999999998864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.58  E-value=6.6e-07  Score=97.34  Aligned_cols=235  Identities=11%  Similarity=0.067  Sum_probs=139.7

Q ss_pred             cCCCCeEEEEcC-CCcEEEEeccccCCCCceeEee-cCCCCCCCCEEEEEE-e-cCCCEEEEEEC---------------
Q 005342          401 LPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIY-S-HSGDFLVALTQ---------------  461 (701)
Q Consensus       401 spdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~-s-pdg~~l~s~s~---------------  461 (701)
                      .|||+++..+.. ++.|.+.|+.    +.++..+. +|.   ......+++ + |+++++++++.               
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~----t~~~~~ii~ip~---g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~  170 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCD----VMKCDAILEIPN---AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  170 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETT----TTEEEEEEECSS---CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             CcCCCEEEEEcCCCCEEEEEECC----CceEeeEEeCCC---CCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence            358888777655 5679999998    55554432 322   345778887 5 99999988863               


Q ss_pred             ---CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C-----------
Q 005342          462 ---TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-----------  524 (701)
Q Consensus       462 ---dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d-----------  524 (701)
                         ++.+.+.|.                     ++.++.....-.+   ....++++  |+++++++ +           
T Consensus       171 ~~~~~~vtvID~---------------------~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~  226 (595)
T 1fwx_A          171 ANYVNVFTAVDA---------------------DKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMT  226 (595)
T ss_dssp             GGEEEEEEEEET---------------------TTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHT
T ss_pred             cccCceEEEEEC---------------------CCCeEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhcc
Confidence               234555544                     4433222111001   11222233  33333333 1           


Q ss_pred             ---------------------------CeEEEEeCCC--CcE-EEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEe
Q 005342          525 ---------------------------GKISIFSLET--FQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHC  572 (701)
Q Consensus       525 ---------------------------g~I~iwd~~~--~~~-~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd  572 (701)
                                                 +.|.+.|..+  ++. +..+.. .....++.++|||  .++++..+.+|.++|
T Consensus       227 ~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid  305 (595)
T 1fwx_A          227 AAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLD  305 (595)
T ss_dssp             CCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred             ccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence                                       3488888887  444 455542 2345789999999  555566778999999


Q ss_pred             CCCCc------------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC------eeeeeeeeeeccCCCC
Q 005342          573 PCTKK------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW------KKLCSKFLHSFQTGLV  634 (701)
Q Consensus       573 ~~~~~------------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g------~~~~~~~l~~~~~~~~  634 (701)
                      +.+.+            .+...... .....++|+|+|...++.--|++|.+||+..+      +.. ...+.+++.+..
T Consensus       306 ~~~~~~~~~~~l~~~~~v~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~-~~vi~kidV~yq  383 (595)
T 1fwx_A          306 VTRFDAVFYENADPRSAVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV-DPIKDKLDVHYQ  383 (595)
T ss_dssp             GGGHHHHHHSCCCGGGGEEECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSC-CCEEEEEECSSC
T ss_pred             CcccccccccccCcccceEEEcCCC-CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhccccc-ceeEEEeecccc
Confidence            98653            33444322 35788999999944445667999999999872      111 234444444432


Q ss_pred             C-CCCCeEEEEEcCCCCEEEEE---ecCeE-----------EEEECCCCc
Q 005342          635 P-ETTIVNHIQFHPDQIHLLSI---HEGQI-----------DVYEAPTLN  669 (701)
Q Consensus       635 ~-~~~~v~~v~~spdg~~l~sg---~Dg~I-----------~iwd~~~g~  669 (701)
                      + |...-.++..+|||++|+++   +-..+           .++|+..++
T Consensus       384 pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          384 PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            1 00111233568999999985   32334           899996555

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.58  E-value=3.5e-05  Score=74.47  Aligned_cols=188  Identities=13%  Similarity=0.114  Sum_probs=122.5

Q ss_pred             CCCEEEEEEecCCCEEEEEECC--CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCE
Q 005342          441 GGRVVRLIYSHSGDFLVALTQT--ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH  518 (701)
Q Consensus       441 ~~~v~~l~~spdg~~l~s~s~d--g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~  518 (701)
                      ..-...+.|++ +....+.+.+  +.|+.+                     |+.++++.... .-.....--.++..++.
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~v---------------------D~~tgkv~~~~-~l~~~~fgeGi~~~~~~   76 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKV---------------------DLETGRILQRA-EVPPPYFGAGIVAWRDR   76 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEE---------------------ETTTCCEEEEE-ECCTTCCEEEEEEETTE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEE---------------------ECCCCCEEEEE-eCCCCcceeEEEEeCCE
Confidence            45678899986 5555555554  477777                     55677755431 11111122345555666


Q ss_pred             EEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-----CCeE
Q 005342          519 LFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRIT  590 (701)
Q Consensus       519 l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----~~V~  590 (701)
                      |....  ++.+.+||.++.+.+.++.....+ ..++  +++ .++++..++.|+++|..+.+.+.++.-..     ..++
T Consensus        77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN  153 (243)
T 3mbr_X           77 LIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN  153 (243)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             EEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence            66666  899999999999999998854332 3444  567 56665668899999999998888776421     2456


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCC----CCCCCCeEEEEEcCCCCEEE-EE
Q 005342          591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL----VPETTIVNHIQFHPDQIHLL-SI  655 (701)
Q Consensus       591 ~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~----~~~~~~v~~v~~spdg~~l~-sg  655 (701)
                      .+.|. +|+..|..-.+..|.+.|.++|+....-.+..+....    .+.....+.|+++|+++.|. +|
T Consensus       154 eLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          154 ELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             eeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            67765 7776666656889999999999765544433222111    11124679999999866555 56

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.56  E-value=1.1e-05  Score=78.08  Aligned_cols=173  Identities=15%  Similarity=0.099  Sum_probs=117.9

Q ss_pred             CCCCeEEEEec-CCEEEEEe-C--CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCCeEEEEeCCCcEEEEeCCCCceE
Q 005342          505 PKDSISCFALR-GSHLFSAS-G--GKISIFSLETFQTLATFANPPPIA-TYFILLPQDLFAFGFDDSSILVHCPCTKKTK  579 (701)
Q Consensus       505 ~~~~v~~l~~s-~~~l~s~s-d--g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~  579 (701)
                      .......+.|+ +....+.+ +  ..|+.+|+++++.+..+....... -.++...+........++.+.+||..+.+.+
T Consensus        19 ~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           19 TTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             TTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             CccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            44567789999 54444444 3  499999999999998886433221 3344443224455677899999999999999


Q ss_pred             EeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC
Q 005342          580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG  658 (701)
Q Consensus       580 ~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg  658 (701)
                      .++..... -..+  .+|+..|+.+..+++|.++|..+.+......+.  ..+..  -..++.+.|. +|+..+.. .++
T Consensus        99 ~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~--~~g~~--~~~lNeLe~~-~G~lyanvw~s~  170 (243)
T 3mbr_X           99 ARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT--AGGRP--LDNLNELEWV-NGELLANVWLTS  170 (243)
T ss_dssp             EEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECE--ETTEE--CCCEEEEEEE-TTEEEEEETTTT
T ss_pred             EEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc--cCCcc--cccceeeEEe-CCEEEEEECCCC
Confidence            98875322 2344  456776666666889999999997654333332  11110  0345777776 67655555 578


Q ss_pred             eEEEEECCCCceeeeeee-----------------eeEEEEEee
Q 005342          659 QIDVYEAPTLNHTSQVLL-----------------ISHIMFVQI  685 (701)
Q Consensus       659 ~I~iwd~~~g~~~~~l~~-----------------i~~~~fs~~  685 (701)
                      .|.+.|..+|+.+..+..                 .++++|+|.
T Consensus       171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~  214 (243)
T 3mbr_X          171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE  214 (243)
T ss_dssp             EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence            999999999999888762                 578999885

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.56  E-value=9e-05  Score=73.68  Aligned_cols=215  Identities=11%  Similarity=0.000  Sum_probs=131.6

Q ss_pred             eEEEEEcCCCCeE-EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCC
Q 005342          395 SRESTSLPDADSA-VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg~~l-~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~  472 (701)
                      +..++|+|++..| ++...++.|..++..    ++....+. +  ........++++|++..++.+.. ++.|.+++.+.
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~----g~~~~~~~-~--~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLH----GGEPTTII-R--QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESS----SCCCEEEE-C--TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecC----CCCcEEEE-E--CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence            6689999976555 455567889999986    33322221 1  12256789999998776666655 67888886622


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C---CeEEEEeCCCCcEEEEec-CCC
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFA-NPP  545 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d---g~I~iwd~~~~~~~~~~~-~~~  545 (701)
                      .                   ....+   . .........++++  +..++.+. .   +.|..+++.. .....+. ...
T Consensus       111 ~-------------------~~~~~---~-~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~  166 (267)
T 1npe_A          111 T-------------------QRRVL---F-DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNL  166 (267)
T ss_dssp             C-------------------SCEEE---E-CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTC
T ss_pred             C-------------------CEEEE---E-ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCC
Confidence            1                   11111   1 1112356788888  56665554 3   6888888853 3333332 223


Q ss_pred             CCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342          546 PIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       546 ~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                      .....++++|++  ++++....+.|.++|.........+.+. .....++.. ++.++++....+.|.++|..+|+..  
T Consensus       167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~--  242 (267)
T 1npe_A          167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM--  242 (267)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE--
T ss_pred             CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce--
Confidence            456899999987  5555666789999998765444333332 334566654 3444455556789999999988533  


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQI  650 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~  650 (701)
                         ..+..+..   .....+++.|++.
T Consensus       243 ---~~i~~g~~---~~p~gi~~~~~~~  263 (267)
T 1npe_A          243 ---DTFHPHKQ---TRLYGITIALSQC  263 (267)
T ss_dssp             ---EEECCSSC---CCCCCEEEECSCC
T ss_pred             ---EEEccccc---cccceeeecCccC
Confidence               22322321   2457788888864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.52  E-value=9.3e-05  Score=75.32  Aligned_cols=219  Identities=13%  Similarity=0.094  Sum_probs=131.1

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc--EEEEecCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT--HKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~--i~vwd~~~  472 (701)
                      ...++|+|+|+++++...++.|..|+..    ......+..     ...+..++++++|+.+++....+.  +..+    
T Consensus        34 pegia~~~~g~lyv~d~~~~~I~~~d~~----g~~~~~~~~-----~~~p~gia~~~dG~l~vad~~~~~~~v~~~----  100 (306)
T 2p4o_A           34 LENLASAPDGTIFVTNHEVGEIVSITPD----GNQQIHATV-----EGKVSGLAFTSNGDLVATGWNADSIPVVSL----  100 (306)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT----CCEEEEEEC-----SSEEEEEEECTTSCEEEEEECTTSCEEEEE----
T ss_pred             cceEEECCCCCEEEEeCCCCeEEEECCC----CceEEEEeC-----CCCceeEEEcCCCcEEEEeccCCcceEEEE----
Confidence            6789999999988887788999999875    332222222     356889999999996555443333  4444    


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEE-e-CCeEEEEeCCCCc-EEEEec------
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-S-GGKISIFSLETFQ-TLATFA------  542 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~-s-dg~I~iwd~~~~~-~~~~~~------  542 (701)
                                       +..++++... ...........++.. +..++.+ . ++.|+++|..+++ .+....      
T Consensus       101 -----------------d~~~g~~~~~-~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~  162 (306)
T 2p4o_A          101 -----------------VKSDGTVETL-LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS  162 (306)
T ss_dssp             -----------------ECTTSCEEEE-EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             -----------------cCCCCeEEEE-EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence                             3344443211 000111223444444 5444444 3 7899999987643 121110      


Q ss_pred             ---CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-Cce--EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342          543 ---NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD  614 (701)
Q Consensus       543 ---~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-~~~--~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd  614 (701)
                         ..-.....+  +|++  ++++-+..+.|+.+|+.. ++.  ...+.. ......++++++|++.++....+.|.++|
T Consensus       163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~  239 (306)
T 2p4o_A          163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIA  239 (306)
T ss_dssp             STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence               111234555  7887  455556678999999874 322  112211 13456789999999877777788999999


Q ss_pred             CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc---CCCCEEEEE
Q 005342          615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH---PDQIHLLSI  655 (701)
Q Consensus       615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s---pdg~~l~sg  655 (701)
                      .. |+..   .+..+..+-    ...++++|.   ||++.|++.
T Consensus       240 ~~-G~~~---~~~~~~~~~----~~p~~~a~~g~~~d~~~LyVt  275 (306)
T 2p4o_A          240 PD-RSTT---IIAQAEQGV----IGSTAVAFGQTEGDCTAIYVV  275 (306)
T ss_dssp             TT-CCEE---EEECGGGTC----TTEEEEEECCSTTTTTEEEEE
T ss_pred             CC-CCEE---EEeeccccc----CCceEEEEecccCCCCEEEEE
Confidence            76 5321   122132221    457899999   898777664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.51  E-value=1.6e-05  Score=77.50  Aligned_cols=187  Identities=11%  Similarity=-0.002  Sum_probs=121.8

Q ss_pred             CCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEE
Q 005342          441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF  520 (701)
Q Consensus       441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~  520 (701)
                      ..-...+.|+ ++...++.+.+|.|+++                     |+.++++....+  .....--.+++.++.|.
T Consensus        54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~i---------------------D~~Tgkv~~~~l--~~~~FgeGit~~g~~Ly  109 (268)
T 3nok_A           54 NAFTQGLVFH-QGHFFESTGHQGTLRQL---------------------SLESAQPVWMER--LGNIFAEGLASDGERLY  109 (268)
T ss_dssp             TCCEEEEEEE-TTEEEEEETTTTEEEEC---------------------CSSCSSCSEEEE--CTTCCEEEEEECSSCEE
T ss_pred             ccccceEEEE-CCEEEEEcCCCCEEEEE---------------------ECCCCcEEeEEC--CCCcceeEEEEeCCEEE
Confidence            3456788887 35555666667888888                     456666443322  11122234666655555


Q ss_pred             EEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-----CCeEEE
Q 005342          521 SAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRITCL  592 (701)
Q Consensus       521 s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----~~V~~v  592 (701)
                      ...  ++.+.+||.++++.+.++...... ..++  +|+ .++.+..++.|+++|..+.+.+.++.-..     ..++.+
T Consensus       110 ~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL  186 (268)
T 3nok_A          110 QLTWTEGLLFTWSGMPPQRERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL  186 (268)
T ss_dssp             EEESSSCEEEEEETTTTEEEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             EEEccCCEEEEEECCcCcEEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence            555  899999999999999998754322 3444  567 66666678899999999999888776421     245677


Q ss_pred             EEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC--C--CCCCCCCeEEEEEcCCCC-EEEEE
Q 005342          593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--G--LVPETTIVNHIQFHPDQI-HLLSI  655 (701)
Q Consensus       593 ~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~--~--~~~~~~~v~~v~~spdg~-~l~sg  655 (701)
                      .|. +|...|..-.++.|.+-|.++|+....-.+..+..  .  ........+.|+|+|+++ ++++|
T Consensus       187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          187 ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            876 77766656568899999999997554433332210  0  001114679999999854 55556

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=0.00034  Score=81.19  Aligned_cols=240  Identities=9%  Similarity=0.042  Sum_probs=150.2

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |.++...++|.+. .|+.++.+..++..    ++....+..+.......|.++...++|.. ..|+.++-+..+      
T Consensus       365 v~~i~~d~~g~lW-igt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~------  432 (781)
T 3v9f_A          365 VSSVCDDGQGKLW-IGTDGGGINVFENG----KRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYY------  432 (781)
T ss_dssp             EEEEEECTTSCEE-EEEBSSCEEEEETT----EEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEE------
T ss_pred             eEEEEEcCCCCEE-EEeCCCcEEEEECC----CCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEE------
Confidence            8899998887755 45555668888875    33222211111223567999998888874 556666667777      


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecCC-----CCCe
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANP-----PPIA  548 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~~-----~~~i  548 (701)
                                     ++.++++............|.++... ...+..|+.+.+..||..+++........     ...|
T Consensus       433 ---------------~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i  497 (781)
T 3v9f_A          433 ---------------NTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFV  497 (781)
T ss_dssp             ---------------CSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCE
T ss_pred             ---------------cCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCccccccccee
Confidence                           44444433210001134578888888 55666666567999998876644332212     3568


Q ss_pred             EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC----CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          549 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       549 ~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      .++...++|.|.+|+.++-+..||..+++... +..    ....|.++...++|.+.++ +.+|.|..||..+++.   .
T Consensus       498 ~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~---~  572 (781)
T 3v9f_A          498 RSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDY---Q  572 (781)
T ss_dssp             EEEEECTTCCEEEEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCC---E
T ss_pred             EEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcE---E
Confidence            99999988856666765568889987665433 321    2346899999889886554 4466669999887642   2


Q ss_pred             eeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce
Q 005342          625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH  670 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~  670 (701)
                      .+. ...+-.  ...|.++...++|.+.+++.+ .|..++..+++.
T Consensus       573 ~~~-~~~gl~--~~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~  614 (781)
T 3v9f_A          573 VFQ-RKEGLP--NTHIRAISEDKNGNIWASTNT-GISCYITSKKCF  614 (781)
T ss_dssp             EEC-GGGTCS--CCCCCEEEECSSSCEEEECSS-CEEEEETTTTEE
T ss_pred             Ecc-ccCCCC--CceEEEEEECCCCCEEEEcCC-ceEEEECCCCce
Confidence            222 112221  156788999999987666544 477788866543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.47  E-value=6.8e-06  Score=89.45  Aligned_cols=195  Identities=9%  Similarity=-0.026  Sum_probs=128.9

Q ss_pred             cCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEe---c-CCEEEEEe-
Q 005342          451 HSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFAL---R-GSHLFSAS-  523 (701)
Q Consensus       451 pdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~---s-~~~l~s~s-  523 (701)
                      +||+++..... ++.|.+.|+                     .+.++... .+.  ....+..+++   . ++++++++ 
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl---------------------~t~~~~~ii~ip--~g~~phg~~~~~~p~~~~v~~~~~  155 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRC---------------------DVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGE  155 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEET---------------------TTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEEC
T ss_pred             cCCCEEEEEcCCCCEEEEEEC---------------------CCceEeeEEeCC--CCCCCcceeeeecCCCcEEEEecc
Confidence            58888888766 456887755                     55553321 121  2234667776   3 67776662 


Q ss_pred             ------------------CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC------------------
Q 005342          524 ------------------GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS------------------  566 (701)
Q Consensus       524 ------------------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg------------------  566 (701)
                                        ++.+.++|..+.+...++.... ....++++|+| ++++.+.+.                  
T Consensus       156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~  234 (595)
T 1fwx_A          156 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV  234 (595)
T ss_dssp             SCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred             cccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEE
Confidence                              4689999999999888876333 45678899999 777776543                  


Q ss_pred             --------------------cEEEEeCCC--Cce-EEeecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCee--
Q 005342          567 --------------------SILVHCPCT--KKT-KAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKK--  620 (701)
Q Consensus       567 --------------------~I~iwd~~~--~~~-~~~l~~h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~g~~--  620 (701)
                                          .|.+.|.++  ++. +..+... ....++.++|||++++.++ .+.+|.++|+.+.+.  
T Consensus       235 V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~  313 (595)
T 1fwx_A          235 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF  313 (595)
T ss_dssp             EEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred             EeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc
Confidence                                467777776  444 4444422 2356789999999776554 688999999996420  


Q ss_pred             ----eee-eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCC----------Cceeeeeee
Q 005342          621 ----LCS-KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT----------LNHTSQVLL  676 (701)
Q Consensus       621 ----~~~-~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~----------g~~~~~l~~  676 (701)
                          ... .....+..|     .....++|+||| .+.+.  -|++|.+||+.+          .+.+..++.
T Consensus       314 ~~~l~~~~~v~~~v~vG-----~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV  380 (595)
T 1fwx_A          314 YENADPRSAVVAEPELG-----LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV  380 (595)
T ss_dssp             HSCCCGGGGEEECCBCC-----SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred             ccccCcccceEEEcCCC-----CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec
Confidence                000 112223333     567899999999 66664  699999999987          455555554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=0.00036  Score=81.03  Aligned_cols=239  Identities=12%  Similarity=0.039  Sum_probs=150.2

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeec------CCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL------PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~------~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      |.++...++|.+ ..|+.++-|..++..    .+....+..      +.......|.++...++|. |..|+.++-+..|
T Consensus       315 v~~i~~D~~g~l-Wigt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~  388 (781)
T 3v9f_A          315 ARYIFQDSFNNI-WIGTWGGGINFISNA----PPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVF  388 (781)
T ss_dssp             EEEEEECSSCCE-EEEEBSSCEEEECSS----CCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEE
T ss_pred             EEEEEEeCCCCE-EEEecCCeEEEeCCC----CCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEE
Confidence            899999988864 456656778888876    333333221      1111346799999988887 4566666667777


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeec-ccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEec---
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTND-IAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA---  542 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~---  542 (701)
                      +.                     .++...... -.......|.++... ...|..|+ ++.+..+|..+++.. .+.   
T Consensus       389 ~~---------------------~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~  446 (781)
T 3v9f_A          389 EN---------------------GKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEK  446 (781)
T ss_dssp             ET---------------------TEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTT
T ss_pred             EC---------------------CCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCC
Confidence            54                     222211100 001234578888887 55566677 678999998776543 332   


Q ss_pred             CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCC-----CCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          543 NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH-----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       543 ~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h-----~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      .....|.++...++|.+..|+. +-+..||..+++........     ...|.++...++|.+.+ |+.++-+..||..+
T Consensus       447 ~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~  524 (781)
T 3v9f_A          447 NELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDM  524 (781)
T ss_dssp             TCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTC
T ss_pred             CCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCC
Confidence            1345789999988885555666 56899998876554322211     35789999999888655 44434478899887


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN  669 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~  669 (701)
                      ++.   ..+. ...+-  ....|.++...++|.+.+++.+|-+..||..+++
T Consensus       525 ~~~---~~~~-~~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          525 QLV---RKFN-QYEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFD  570 (781)
T ss_dssp             CEE---EEEC-TTTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCC
T ss_pred             CeE---EEcc-CCCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCc
Confidence            642   1222 11111  1267899999999987666554444888887665

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.41  E-value=0.00014  Score=74.53  Aligned_cols=238  Identities=12%  Similarity=0.073  Sum_probs=136.4

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC--------C--------CCCCEEEEEEec-CCCEEE
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN--------S--------FGGRVVRLIYSH-SGDFLV  457 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~--------~--------~~~~v~~l~~sp-dg~~l~  457 (701)
                      ...++|.|+|++++++..++.|..|+..    .+....+..+..        +        ....+..+++.+ +|+ |+
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~   95 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGP----NSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LY   95 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCT----TTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCC----CCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EE
Confidence            3468899999988888888999999876    443333321110        0        013578999998 555 56


Q ss_pred             EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeE--EeecccCCCCCCeEEEEec---CCEEEEEe---------
Q 005342          458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV--MTNDIAADPKDSISCFALR---GSHLFSAS---------  523 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~v~~l~~s---~~~l~s~s---------  523 (701)
                      ++...+.+..+|.                     .++..  +..............++++   |+..++..         
T Consensus        96 v~d~~~~i~~~d~---------------------~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~  154 (322)
T 2fp8_A           96 IVDCYYHLSVVGS---------------------EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV  154 (322)
T ss_dssp             EEETTTEEEEECT---------------------TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred             EEECCCCEEEEeC---------------------CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence            6655555766654                     22221  1000000011235566665   33333321         


Q ss_pred             ---------CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCc--eEEeecCCCCCeE
Q 005342          524 ---------GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTKK--TKAKLKGHQNRIT  590 (701)
Q Consensus       524 ---------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~g-s~dg~I~iwd~~~~~--~~~~l~~h~~~V~  590 (701)
                               ++.|..||..+++...... .......++++|+| .++++ +.++.|++|++....  ....+....+ ..
T Consensus       155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~  232 (322)
T 2fp8_A          155 QQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PG  232 (322)
T ss_dssp             HHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EE
T ss_pred             ceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CC
Confidence                     2678889987665432222 12234679999999 55544 566899999987521  1112211223 78


Q ss_pred             EEEEecCCCEEEEEeC----------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCe
Q 005342          591 CLAYSLSLNVLVSSGA----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ  659 (701)
Q Consensus       591 ~v~~spdg~~l~s~s~----------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~  659 (701)
                      .+++.++|++.++...          .+.|..+|.. |+..  ..+. ...+..  ...+.++.+ .++++.+++ ..+.
T Consensus       233 gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~--~~~~-~~~g~~--~~~~~~~~~-~~g~L~v~~~~~~~  305 (322)
T 2fp8_A          233 NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNIL--EVIP-LPPPFA--GEHFEQIQE-HDGLLYIGTLFHGS  305 (322)
T ss_dssp             EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEE--EEEE-CCTTTT--TSCCCEEEE-ETTEEEEECSSCSE
T ss_pred             CeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEE--EEEE-CCCCCc--cccceEEEE-eCCEEEEeecCCCc
Confidence            8999999997666544          4678888875 4422  2232 222211  044666666 456555554 6788


Q ss_pred             EEEEECCC
Q 005342          660 IDVYEAPT  667 (701)
Q Consensus       660 I~iwd~~~  667 (701)
                      |.++++..
T Consensus       306 i~~~~~~~  313 (322)
T 2fp8_A          306 VGILVYDK  313 (322)
T ss_dssp             EEEEEC--
T ss_pred             eEEEeccc
Confidence            99998853

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.38  E-value=2.7e-05  Score=88.51  Aligned_cols=141  Identities=13%  Similarity=0.008  Sum_probs=94.5

Q ss_pred             eEEEEeCCCCcEEEEecCC--C-------CCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCCC------
Q 005342          526 KISIFSLETFQTLATFANP--P-------PIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQ------  586 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~~~--~-------~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~------  586 (701)
                      .|..+|..+|+.+..++..  .       .+.....+..+|    .++.++.+|.++++|..+|+.+.......      
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  350 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence            4999999999999888642  1       222222333355    58899999999999999999874332111      


Q ss_pred             -----C-C------------------------eEEEEEecCCCEEEEE--------------------------------
Q 005342          587 -----N-R------------------------ITCLAYSLSLNVLVSS--------------------------------  604 (701)
Q Consensus       587 -----~-~------------------------V~~v~~spdg~~l~s~--------------------------------  604 (701)
                           + +                        -..++++|+...++..                                
T Consensus       351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  430 (668)
T 1kv9_A          351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (668)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCC
Confidence                 0 0                        0126788876655431                                


Q ss_pred             ----eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          605 ----GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       605 ----s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                          ..+|.|+.||+.+|+..-.....          .+.....+...+.+++++ .|+.++.||..+|+.+..+..
T Consensus       431 ~p~~~~~g~l~A~D~~tG~~~W~~~~~----------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          431 VPAAVVSGALLAWDPVKQKAAWKVPYP----------THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEES----------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCCccceEEEEeCCCCcEEEEccCC----------CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence                13488999999999754333322          223333444567777776 799999999999999887765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.31  E-value=0.00017  Score=81.86  Aligned_cols=174  Identities=13%  Similarity=0.105  Sum_probs=103.7

Q ss_pred             EEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCC-------CCeEE--EEecC
Q 005342          446 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-------DSISC--FALRG  516 (701)
Q Consensus       446 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------~~v~~--l~~s~  516 (701)
                      .+++.|++..++.++.++..  |+........|.......+..+|+.+|+..-..-...|.       .+...  +.+.|
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~--w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G  311 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSP--WNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG  311 (668)
T ss_dssp             CEEEETTTTEEEEECCCEES--SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             ceEEcCCCCEEEEeCCCCCc--cccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence            46788888888888776542  321000000111111223556677888754221111121       22222  22334


Q ss_pred             C---EEEEEe-CCeEEEEeCCCCcEEEEecCCC------------CC------------------------eEEEEEcCC
Q 005342          517 S---HLFSAS-GGKISIFSLETFQTLATFANPP------------PI------------------------ATYFILLPQ  556 (701)
Q Consensus       517 ~---~l~s~s-dg~I~iwd~~~~~~~~~~~~~~------------~~------------------------i~~l~~spd  556 (701)
                      +   .++.++ +|.++++|..+|+.+.......            .+                        -..++++|+
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~  391 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG  391 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred             cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence            3   577777 8999999999999874432111            00                        012678888


Q ss_pred             C-eEEEEe------------------------------------CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCC
Q 005342          557 D-LFAFGF------------------------------------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN  599 (701)
Q Consensus       557 g-~l~~gs------------------------------------~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~  599 (701)
                      . .+++..                                    .+|.|+.||+.+++.+-+...+ .++....+...+.
T Consensus       392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg  470 (668)
T 1kv9_A          392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGN  470 (668)
T ss_dssp             TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTT
T ss_pred             CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCC
Confidence            7 444321                                    2378999999999987766533 3344445556778


Q ss_pred             EEEEEeCCCeEEEEECCCCeeee
Q 005342          600 VLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       600 ~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                      +++.++.|+.+++||.++|+.+.
T Consensus       471 ~vf~g~~dg~l~a~d~~tG~~l~  493 (668)
T 1kv9_A          471 LVFQGTAAGQMHAYSADKGEALW  493 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEEECCcccchhhhhhcChhhe
Confidence            88889999999999999997554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.26  E-value=0.0027  Score=65.71  Aligned_cols=239  Identities=10%  Similarity=0.008  Sum_probs=139.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSN  473 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~  473 (701)
                      ..+.+..+++ +|+.+.. ..|+..++.    ......+..    ....+..++|++.+..|+.+.. .+.|..++..  
T Consensus        36 ~~C~~~~~~~-~ll~~~~-~~I~~i~~~----g~~~~~~~~----~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~--  103 (349)
T 3v64_C           36 RSCKALGPEP-VLLFANR-IDIRQVLPH----RSEYTLLLN----NLENAIALDFHHRRELVFWSDVTLDRILRANLN--  103 (349)
T ss_dssp             SCEEESSSCC-EEEEECB-SCEEEECTT----SCCEEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--
T ss_pred             CcccccccCc-eeEeecc-cceEEEeCC----CCeeEEeec----CCCceEEEEEeccccEEEEEeccCCceEEEecC--
Confidence            4455555643 4444433 457777765    333322221    2355889999987776666654 6777777552  


Q ss_pred             CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeE
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIAT  549 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~  549 (701)
                                         ++..... + .........++++  +..|+.+.  .+.|.+.++........+........
T Consensus       104 -------------------g~~~~~~-~-~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~  162 (349)
T 3v64_C          104 -------------------GSNVEEV-V-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPR  162 (349)
T ss_dssp             -------------------SCSCEEE-E-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEE
T ss_pred             -------------------CCCceEE-E-eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcc
Confidence                               2221110 1 1112234567776  55555554  68999999865443333333345678


Q ss_pred             EEEEcCCC--eEEEEeCC-CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCeeeeeee
Q 005342          550 YFILLPQD--LFAFGFDD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKF  625 (701)
Q Consensus       550 ~l~~spdg--~l~~gs~d-g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~~~~~~  625 (701)
                      .++++|.+  ++++-..+ +.|+.+++............-...+.++++|++..|. +-+..+.|..+|+......  ..
T Consensus       163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~--~~  240 (349)
T 3v64_C          163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK--AV  240 (349)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EE
T ss_pred             eEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE--EE
Confidence            99999966  55555555 7899999765433222222334578999998666554 4455778999998764311  11


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      +.    ...   ....++++. .+...++. ..+.|..++..+|+.+..+..
T Consensus       241 ~~----~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  284 (349)
T 3v64_C          241 IS----QGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN  284 (349)
T ss_dssp             EC----SSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             Ee----CCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence            11    111   445778873 44444444 578898898778877666654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.24  E-value=0.0018  Score=68.03  Aligned_cols=237  Identities=11%  Similarity=0.003  Sum_probs=138.7

Q ss_pred             EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCc
Q 005342          397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQ  475 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~  475 (701)
                      +.+..++ .+|+.+.. ..|+..++.    .+....+..    ....+..++|++.+..|+.+.. .+.|..++.     
T Consensus        81 C~~~~~~-~~l~~~~~-~~I~~i~~~----~~~~~~~~~----~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~-----  145 (386)
T 3v65_B           81 CKALGPE-PVLLFANR-IDIRQVLPH----RSEYTLLLN----NLENAIALDFHHRRELVFWSDVTLDRILRANL-----  145 (386)
T ss_dssp             EEECSSC-CEEEEECB-SCEEEECTT----SCCCEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEET-----
T ss_pred             ECCcccc-ceeEeecC-ccceeeccC----CCcEEEEec----CCCccEEEEEecCCCeEEEEeCCCCcEEEEec-----
Confidence            4444553 34444443 567777775    333333221    2356889999987776666554 677777754     


Q ss_pred             cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYF  551 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l  551 (701)
                                      .++..... +. ........++++  +..|+.+.  .+.|.+.++........+.........+
T Consensus       146 ----------------~g~~~~~~-~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gi  207 (386)
T 3v65_B          146 ----------------NGSNVEEV-VS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI  207 (386)
T ss_dssp             ----------------TSCCEEEE-EC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEE
T ss_pred             ----------------CCCCcEEE-Ee-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEE
Confidence                            33221110 11 111234456666  55555544  6899999986544333333334567899


Q ss_pred             EEcCCC--eEEEEeCC-CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCeeeeeeeee
Q 005342          552 ILLPQD--LFAFGFDD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLH  627 (701)
Q Consensus       552 ~~spdg--~l~~gs~d-g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~~~~~~l~  627 (701)
                      +++|.+  ++++-..+ +.|+.+++............-...+.++|+|++..|+ +-+..+.|..+|+.....   ..+.
T Consensus       208 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~  284 (386)
T 3v65_B          208 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVI  284 (386)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---EEEE
T ss_pred             EEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---EEEE
Confidence            999876  44454455 7899999765433332333334578999998666554 455678899999876431   1111


Q ss_pred             eccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          628 SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       628 ~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                        . ...   ....++++ ..+..+++. ..+.|..++..+|+.+..+..
T Consensus       285 --~-~~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          285 --S-QGL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             --C-SSC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             --E-CCC---CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence              1 111   44577888 334444444 678899999778877776654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.22  E-value=0.00044  Score=70.75  Aligned_cols=201  Identities=11%  Similarity=0.017  Sum_probs=124.1

Q ss_pred             CEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccC-----------------CC
Q 005342          443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-----------------DP  505 (701)
Q Consensus       443 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~-----------------~~  505 (701)
                      ...+++|+++|+.+.++..++.|..|+..+                     +.+.......                 ..
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   78 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPN---------------------SGFVDFAYASPYWNKAFCENSTDAEKRPL   78 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTT---------------------TCEEEEEESCTTCCHHHHTTCCCGGGHHH
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCC---------------------CceEEEecccccccccccccccchhcccc
Confidence            345678999998778888888998886532                     2211100000                 00


Q ss_pred             CCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec----C-CCCCeEEEEEcC-CC-eEEEEeC-----------
Q 005342          506 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA----N-PPPIATYFILLP-QD-LFAFGFD-----------  564 (701)
Q Consensus       506 ~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~----~-~~~~i~~l~~sp-dg-~l~~gs~-----------  564 (701)
                      ...+..++++  +..|+++. .+.|..+|..++.. ..+.    + .......+++++ +| +.++...           
T Consensus        79 ~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~  157 (322)
T 2fp8_A           79 CGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI  157 (322)
T ss_dssp             HCCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred             CCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence            1246788887  45666665 66688999876542 2221    1 113468899999 88 4444322           


Q ss_pred             ------CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342          565 ------DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET  637 (701)
Q Consensus       565 ------dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~  637 (701)
                            ++.|+.||..+++......+ -...+.++++|+|++|+.+ +..+.|++|++.....-....+...    .   
T Consensus       158 ~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~----~---  229 (322)
T 2fp8_A          158 MDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI----P---  229 (322)
T ss_dssp             HHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC----S---
T ss_pred             hcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC----C---
Confidence                  36799999877764332222 2345789999999865544 5678999999885311011112111    1   


Q ss_pred             CCeEEEEEcCCCCEEEEE-e----------cCeEEEEECCCCceeeeee
Q 005342          638 TIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       638 ~~v~~v~~spdg~~l~sg-~----------Dg~I~iwd~~~g~~~~~l~  675 (701)
                      + ...+++.++|++.++. .          .+.|..+|. .|+.+..+.
T Consensus       230 g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~  276 (322)
T 2fp8_A          230 N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP  276 (322)
T ss_dssp             S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE
T ss_pred             C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEE
Confidence            3 6789999999877764 3          366888887 577776664

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.22  E-value=0.0062  Score=61.99  Aligned_cols=232  Identities=10%  Similarity=0.015  Sum_probs=134.3

Q ss_pred             EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCcccccccccee
Q 005342          407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNME  485 (701)
Q Consensus       407 l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~  485 (701)
                      |+.+.. ..|+..++.    +.....+. +   ....+.+++|++++..|+.+.. ++.|..++..+..           
T Consensus         4 ll~~~~-~~I~~i~~~----~~~~~~~~-~---~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~-----------   63 (316)
T 1ijq_A            4 LFFTNR-HEVRKMTLD----RSEYTSLI-P---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH-----------   63 (316)
T ss_dssp             EEEECB-SSEEEEETT----SCCCEEEE-C---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------
T ss_pred             EEEECC-CeEEEEECC----CcceEehh-c---CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCC-----------
Confidence            444444 467888886    33332221 1   2456889999997776666655 5788888653210           


Q ss_pred             eEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eE
Q 005342          486 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LF  559 (701)
Q Consensus       486 i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l  559 (701)
                             .+......+ .........++++  +..|+.+.  .+.|.++|.........+.........++++|.+  .+
T Consensus        64 -------~~~~~~~~~-~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly  135 (316)
T 1ijq_A           64 -------GVSSYDTVI-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  135 (316)
T ss_dssp             -----------CEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             -------CCcccEEEE-eCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEE
Confidence                   001000001 1112244677776  55555554  6899999986544333333334567899999966  44


Q ss_pred             EEEeCC-CcEEEEeCCCCceEEee-cCCCCCeEEEEEecCCCEEEE-EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCC
Q 005342          560 AFGFDD-SSILVHCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE  636 (701)
Q Consensus       560 ~~gs~d-g~I~iwd~~~~~~~~~l-~~h~~~V~~v~~spdg~~l~s-~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~  636 (701)
                      ++.... +.|...++.. .....+ ...-...+.++++|++..|+. -+..+.|..+|+.....   ..+.... +..  
T Consensus       136 ~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~---~~~~~~~-~~~--  208 (316)
T 1ijq_A          136 WTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDE-KRL--  208 (316)
T ss_dssp             EEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECT-TTT--
T ss_pred             EEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce---EEEeecC-Ccc--
Confidence            444443 7899998754 333333 223346789999997766654 45567999999985431   2221111 111  


Q ss_pred             CCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342          637 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       637 ~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                       ....++++. .+..+++- ..+.|..++..+|+.+..+.
T Consensus       209 -~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          209 -AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             -SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             -CCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence             345677774 34444443 57889999988887666554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.22  E-value=0.00014  Score=80.86  Aligned_cols=140  Identities=9%  Similarity=-0.049  Sum_probs=92.5

Q ss_pred             eEEEEeCCCCcEEEEecCCC----------CCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCCC-----
Q 005342          526 KISIFSLETFQTLATFANPP----------PIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----  586 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~~~~----------~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----  586 (701)
                      .|..+|.++|+.+..++...          .++ -+...++|    .++.++.+|.++++|..+|+.+....-..     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            69999999999988876321          111 12222456    36778899999999999998876554211     


Q ss_pred             --------CCe--------------------------EEEEEecCCCEEEEEe---------------------------
Q 005342          587 --------NRI--------------------------TCLAYSLSLNVLVSSG---------------------------  605 (701)
Q Consensus       587 --------~~V--------------------------~~v~~spdg~~l~s~s---------------------------  605 (701)
                              .++                          ..++++|+..+++..+                           
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                    111                          2467888877666543                           


Q ss_pred             ----------CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeee
Q 005342          606 ----------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       606 ----------~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l  674 (701)
                                .++.|+.||..+|+..-.....          ..+.+......+..++++ .|+.++.||..+|+.+.++
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----------FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEES----------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCC----------CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence                      3578999999998754332222          112222223345556665 7999999999999999888


Q ss_pred             ee
Q 005342          675 LL  676 (701)
Q Consensus       675 ~~  676 (701)
                      ..
T Consensus       502 ~~  503 (571)
T 2ad6_A          502 KM  503 (571)
T ss_dssp             EC
T ss_pred             eC
Confidence            75

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.19  E-value=0.00032  Score=80.91  Aligned_cols=196  Identities=11%  Similarity=-0.031  Sum_probs=104.8

Q ss_pred             EEEEcCCCCeEEEEcCC-----CcEEEEeccccCCCCcee-EeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEE
Q 005342          397 ESTSLPDADSAVCAKSL-----EKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKL  467 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d-----~~v~iw~~~~~~~~~~~~-~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~v  467 (701)
                      .++|+|||+.|+....|     ..|..+++.    +++.. .+.... ........+.|||||++|+..+.+   ..+.+
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg----t~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~  299 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMG----KLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHL  299 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETT----SCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECC----CCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEE
Confidence            57899999988877665     257777775    33211 111111 122346788999999998876642   34444


Q ss_pred             EecCCCCccccccccceeeEEeeCCCC--eE-EeecccCCCCCCeEEEEec-CCEEEEEe--C----CeEEEEeCCCCcE
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSK--LV-MTNDIAADPKDSISCFALR-GSHLFSAS--G----GKISIFSLETFQT  537 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~--~~-~~~~~~~~~~~~v~~l~~s-~~~l~s~s--d----g~I~iwd~~~~~~  537 (701)
                      +|+                     .++  .. +.. +.........++.|+ |+.|+..+  +    ..|..+|+.++..
T Consensus       300 ~d~---------------------~~~~~~~~~~~-l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~  357 (751)
T 2xe4_A          300 LDL---------------------RKGNAHNTLEI-VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSD  357 (751)
T ss_dssp             EES---------------------SSCTTCCCEEE-SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTC
T ss_pred             EEC---------------------CCCCCCceeEE-eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccc
Confidence            544                     332  12 011 223344566777766 76665544  3    3688888865322


Q ss_pred             EEE-ecCCCC--CeEEEEEcCCCeEEEEeCCC--cEEEEeC-------CCCceEEeecC-CCCCeEEEEE----ecCCC-
Q 005342          538 LAT-FANPPP--IATYFILLPQDLFAFGFDDS--SILVHCP-------CTKKTKAKLKG-HQNRITCLAY----SLSLN-  599 (701)
Q Consensus       538 ~~~-~~~~~~--~i~~l~~spdg~l~~gs~dg--~I~iwd~-------~~~~~~~~l~~-h~~~V~~v~~----spdg~-  599 (701)
                      ... +..+..  .+..+.+..+.++++...++  .|+++|+       .+++....+.- ....+..+.+    ++++. 
T Consensus       358 ~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~  437 (751)
T 2xe4_A          358 WSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPT  437 (751)
T ss_dssp             CCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSC
T ss_pred             ceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCE
Confidence            222 222333  34455554211667777777  4666775       34441333321 1122333332    34555 


Q ss_pred             EEEEEeCC---CeEEEEECCCCe
Q 005342          600 VLVSSGAD---AQLCVWDAVGWK  619 (701)
Q Consensus       600 ~l~s~s~D---~~I~vwd~~~g~  619 (701)
                      ++++.+..   ..++.+|+.+++
T Consensus       438 l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          438 FRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             EEEEEEETTEEEEEEEECTTTCC
T ss_pred             EEEEEeCCCCCCEEEEEECCCCc
Confidence            44444432   468888888875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.18  E-value=0.00019  Score=79.92  Aligned_cols=141  Identities=9%  Similarity=-0.045  Sum_probs=90.5

Q ss_pred             eEEEEeCCCCcEEEEecCCCC---------CeEEEEEc-CCC----eEEEEeCCCcEEEEeCCCCceEEeecCCC-----
Q 005342          526 KISIFSLETFQTLATFANPPP---------IATYFILL-PQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----  586 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~~~~~---------~i~~l~~s-pdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----  586 (701)
                      .|.-+|.++|+.+..++....         ...-+... .+|    .++.++.+|.++++|.++|+.+....-..     
T Consensus       279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~  358 (599)
T 1w6s_A          279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF  358 (599)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccc
Confidence            899999999999888764321         11112222 455    46678899999999999998876543110     


Q ss_pred             --------CCe--------------------------EEEEEecCCCEEEEEe---------------------------
Q 005342          587 --------NRI--------------------------TCLAYSLSLNVLVSSG---------------------------  605 (701)
Q Consensus       587 --------~~V--------------------------~~v~~spdg~~l~s~s---------------------------  605 (701)
                              .++                          ..++++|+..++++..                           
T Consensus       359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  438 (599)
T 1w6s_A          359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM  438 (599)
T ss_dssp             EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence                    011                          2457777766554421                           


Q ss_pred             ------------CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342          606 ------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       606 ------------~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~  672 (701)
                                  .+|.+..||+.+|+.+-.....          .+..+-.....+..++.+ .|+.++.||..+|+.+-
T Consensus       439 ~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----------~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW  508 (599)
T 1w6s_A          439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----------FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW  508 (599)
T ss_dssp             EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----------CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence                        3478999999998754433322          111111122245566665 79999999999999988


Q ss_pred             eeee
Q 005342          673 QVLL  676 (701)
Q Consensus       673 ~l~~  676 (701)
                      ++..
T Consensus       509 ~~~l  512 (599)
T 1w6s_A          509 KFKI  512 (599)
T ss_dssp             EEEC
T ss_pred             EeeC
Confidence            7764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.16  E-value=0.00014  Score=83.83  Aligned_cols=237  Identities=8%  Similarity=-0.001  Sum_probs=125.7

Q ss_pred             eEEEEEc-CCCCeEEEEcC-C----CcEEEEeccccCCCC-ceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC----
Q 005342          395 SRESTSL-PDADSAVCAKS-L----EKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA----  463 (701)
Q Consensus       395 V~~l~~s-pdg~~l~s~s~-d----~~v~iw~~~~~~~~~-~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg----  463 (701)
                      +...+|| |||++||.+.. +    ..|+++|+.    ++ +...-.+     ......++|+|||+.|+....+.    
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~----~g~~~l~~~~-----~~~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRIS----DPSQTIADKV-----SGTNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETT----CTTCCCCCCE-----EEECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECC----CCCEeCCccc-----cCceeeEEEecCCCEEEEEEECCCCCC
Confidence            7789999 99999886543 2    259999997    44 3111000     11134678999999888877652    


Q ss_pred             -cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe----CCeEEEEeCCCCc
Q 005342          464 -THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS----GGKISIFSLETFQ  536 (701)
Q Consensus       464 -~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s----dg~I~iwd~~~~~  536 (701)
                       .|..+++.++.                 ....++   +..........+.|+  |++|+..+    ...|+++|+.++.
T Consensus       247 ~~v~~~~lgt~~-----------------~~~~lv---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~  306 (751)
T 2xe4_A          247 NKVWRHVMGKLQ-----------------SEDVCL---YEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN  306 (751)
T ss_dssp             EEEEEEETTSCG-----------------GGCEEE---EECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred             CEEEEEECCCCc-----------------hhcEEE---EecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence             34444432210                 001122   111223345678888  77777654    2578999998752


Q ss_pred             -EE--EEec-CCCCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCCceEEe-ecCCCC--CeEEEEEecCCC-EEEE
Q 005342          537 -TL--ATFA-NPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAK-LKGHQN--RITCLAYSLSLN-VLVS  603 (701)
Q Consensus       537 -~~--~~~~-~~~~~i~~l~~spdg-~l~~gs~d----g~I~iwd~~~~~~~~~-l~~h~~--~V~~v~~spdg~-~l~s  603 (701)
                       ..  ..+. .......++.|+.++ +++....+    ..|+.+|+.++..... +..|..  .+..+.+  ++. ++++
T Consensus       307 ~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~  384 (751)
T 2xe4_A          307 AHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVA  384 (751)
T ss_dssp             TCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEE
T ss_pred             CCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEE
Confidence             22  3343 234445666655545 44454443    3688888765322222 223433  3344444  444 4556


Q ss_pred             EeCCCe--EEEEEC-------CCCeeeeeeeeeeccCCCCCCCCCeEEEEE----cCCCCEEE-E--E--ecCeEEEEEC
Q 005342          604 SGADAQ--LCVWDA-------VGWKKLCSKFLHSFQTGLVPETTIVNHIQF----HPDQIHLL-S--I--HEGQIDVYEA  665 (701)
Q Consensus       604 ~s~D~~--I~vwd~-------~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~----spdg~~l~-s--g--~Dg~I~iwd~  665 (701)
                      ...++.  |+++|+       .+++.  ...+. ++ +.    ..+..+.+    ++++..++ +  +  .-..+..+|+
T Consensus       385 ~~~~g~~~l~~~dl~~~~~~~~~g~~--~~~l~-l~-~~----~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~  456 (751)
T 2xe4_A          385 GRRAGLTRIWTMMADSQDGVFKAGTG--LREVV-ME-EP----IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSP  456 (751)
T ss_dssp             EEETTEEEEEEEECCTTTSCCCTTTC--CEECC-CC-CS----SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECT
T ss_pred             EEeCCEEEEEEEecccccccccCCcc--ceEEC-CC-Cc----eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            666775  556665       33320  11222 21 11    22334433    34665443 3  2  2356888888


Q ss_pred             CCCce
Q 005342          666 PTLNH  670 (701)
Q Consensus       666 ~~g~~  670 (701)
                      .+++.
T Consensus       457 ~~~~~  461 (751)
T 2xe4_A          457 QDHSR  461 (751)
T ss_dssp             TTCCE
T ss_pred             CCCcE
Confidence            77763

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.16  E-value=0.00024  Score=78.91  Aligned_cols=129  Identities=12%  Similarity=-0.015  Sum_probs=83.8

Q ss_pred             EEEEEe-CCeEEEEeCCCCcEEEEecCCC-------------CCe--------------------------EEEEEcCCC
Q 005342          518 HLFSAS-GGKISIFSLETFQTLATFANPP-------------PIA--------------------------TYFILLPQD  557 (701)
Q Consensus       518 ~l~s~s-dg~I~iwd~~~~~~~~~~~~~~-------------~~i--------------------------~~l~~spdg  557 (701)
                      .++.++ +|.++++|..+|+.+..+....             .++                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            466677 8999999999999887664221             011                          246788887


Q ss_pred             -eEEEEe-------------------------------------CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCC
Q 005342          558 -LFAFGF-------------------------------------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN  599 (701)
Q Consensus       558 -~l~~gs-------------------------------------~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~  599 (701)
                       .+++++                                     .+|.|+.||..+++.+-++... ..+........+.
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg  476 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGG  476 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTT
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCC
Confidence             555543                                     3578999999999987776532 2333333344566


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342          600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI  655 (701)
Q Consensus       600 ~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg  655 (701)
                      .++.++.|+.++.||.++|+.+....+.   .+..  ..+   +.+..+|+.+++.
T Consensus       477 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~---~~~~--~~p---~~~~~~G~~yv~~  524 (571)
T 2ad6_A          477 LVWYATLDGYLKALDNKDGKELWNFKMP---SGGI--GSP---MTYSFKGKQYIGS  524 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECS---SCCC--SCC---EEEEETTEEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCCEEEEEeCC---CCcE--eee---EEEEECCEEEEEE
Confidence            7777999999999999999755433222   1111  022   3466788766653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.14  E-value=0.00077  Score=65.99  Aligned_cols=205  Identities=12%  Similarity=0.050  Sum_probs=122.2

Q ss_pred             CCCCCCCCEEEEEEecCCCEEEE-EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEe
Q 005342          436 PDNSFGGRVVRLIYSHSGDFLVA-LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL  514 (701)
Q Consensus       436 ~~~~~~~~v~~l~~spdg~~l~s-~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~  514 (701)
                      +..+-...+..++|+|++..|++ ...++.|...|                     +. +.+... +.-+-....-.+++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld---------------------~~-g~v~~~-i~l~g~~D~EGIa~   77 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMT---------------------TN-GDLIRT-IPLDFVKDLETIEY   77 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEE---------------------TT-CCEEEE-EECSSCSSEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEe---------------------CC-CCEEEE-EecCCCCChHHeEE
Confidence            33345568999999998776665 44566666664                     44 444432 11122246778888


Q ss_pred             c-CCEEEEEe--CCeEEEEeCCCCcE---EEEec------CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC---CCce
Q 005342          515 R-GSHLFSAS--GGKISIFSLETFQT---LATFA------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---TKKT  578 (701)
Q Consensus       515 s-~~~l~s~s--dg~I~iwd~~~~~~---~~~~~------~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~---~~~~  578 (701)
                      . +..++.++  ++.+.++++.....   +....      ........++++|++ .++++.+.....+|.+.   ....
T Consensus        78 ~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~  157 (255)
T 3qqz_A           78 IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE  157 (255)
T ss_dssp             CSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred             eCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence            8 44444444  68899998765432   22222      123446899999999 66666655444444432   1111


Q ss_pred             EEeec-------CCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCC---CCCCeEEEEEcC
Q 005342          579 KAKLK-------GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP---ETTIVNHIQFHP  647 (701)
Q Consensus       579 ~~~l~-------~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~---~~~~v~~v~~sp  647 (701)
                      +..+.       .+...+.+++++|. +++++.......+.++|.... .+....   +..+..+   .-.....|+|.|
T Consensus       158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~---L~~g~~~l~~~~~qpEGia~d~  233 (255)
T 3qqz_A          158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMS---LTKGSRGLSHNIKQAEGVAMDA  233 (255)
T ss_dssp             CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEE---CSTTGGGCSSCCCSEEEEEECT
T ss_pred             eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEE---cCCccCCcccccCCCCeeEECC
Confidence            22221       13346789999994 556677777889999997753 332222   3333210   003568999999


Q ss_pred             CCCEEEEEecCeEEEEECCC
Q 005342          648 DQIHLLSIHEGQIDVYEAPT  667 (701)
Q Consensus       648 dg~~l~sg~Dg~I~iwd~~~  667 (701)
                      +|++.+++..+.++++.-..
T Consensus       234 ~G~lyIvsE~n~~y~f~~~~  253 (255)
T 3qqz_A          234 SGNIYIVSEPNRFYRFTPQS  253 (255)
T ss_dssp             TCCEEEEETTTEEEEEEC--
T ss_pred             CCCEEEEcCCceEEEEEecC
Confidence            99988888777777776543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.04  E-value=0.0019  Score=65.52  Aligned_cols=206  Identities=10%  Similarity=-0.062  Sum_probs=122.5

Q ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE
Q 005342          442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  519 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l  519 (701)
                      .....++|+++|+.+++-..++.|..||.                     .++....  +.  ....+..++++  |+++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~---------------------~g~~~~~--~~--~~~~p~gia~~~dG~l~   86 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITP---------------------DGNQQIH--AT--VEGKVSGLAFTSNGDLV   86 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECT---------------------TCCEEEE--EE--CSSEEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECC---------------------CCceEEE--Ee--CCCCceeEEEcCCCcEE
Confidence            45778999999986555556788888754                     3322111  11  12457788998  6654


Q ss_pred             EEEe-C--CeEEEEeCCCCcEEEEecC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEee---------cC
Q 005342          520 FSAS-G--GKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKL---------KG  584 (701)
Q Consensus       520 ~s~s-d--g~I~iwd~~~~~~~~~~~~-~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~-~~~l---------~~  584 (701)
                      ++.. .  ..|..+|..+++....... .......++..+++ .+++...++.|+.+|..+++. +...         .+
T Consensus        87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~  166 (306)
T 2p4o_A           87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES  166 (306)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred             EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence            4443 2  2577788878775433321 12233556666666 555555688999999876421 1100         01


Q ss_pred             CCCCeEEEEEecCCCEE-EEEeCCCeEEEEECCC-CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEE
Q 005342          585 HQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID  661 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l-~s~s~D~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~  661 (701)
                      .-...+.+  +|++++| ++-+..++|+++++.. |.......+...        .....++++++|++.++. ..+.|.
T Consensus       167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--------~~P~gi~vd~dG~l~va~~~~~~V~  236 (306)
T 2p4o_A          167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--------TNIDDFAFDVEGNLYGATHIYNSVV  236 (306)
T ss_dssp             CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--------CCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred             CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--------CCCCCeEECCCCCEEEEeCCCCeEE
Confidence            11234555  8888755 4555678999999875 432111112111        234568899999876664 578899


Q ss_pred             EEECCCCceee--eeee----eeEEEEE
Q 005342          662 VYEAPTLNHTS--QVLL----ISHIMFV  683 (701)
Q Consensus       662 iwd~~~g~~~~--~l~~----i~~~~fs  683 (701)
                      ++|.. |+...  .+..    .++++|.
T Consensus       237 ~~~~~-G~~~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          237 RIAPD-RSTTIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             EECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred             EECCC-CCEEEEeecccccCCceEEEEe
Confidence            99974 76532  2332    6777776

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.04  E-value=0.00048  Score=78.14  Aligned_cols=232  Identities=7%  Similarity=-0.045  Sum_probs=125.6

Q ss_pred             EEEEEcCCCCeEEEEcC-CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CC-----CcEEEE
Q 005342          396 RESTSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QT-----ATHKLW  468 (701)
Q Consensus       396 ~~l~~spdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~d-----g~i~vw  468 (701)
                      .++++.++|+.++.|+. +..+.+||..    +.+...+. +... ...-.+++..++|+.++.|+ .+     ..+.+|
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~----t~~W~~~~-~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y  319 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSS----SDSWIPGP-DMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY  319 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGG----GTEEEECC-CCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCc----CCceeECC-CCCc-cccccceEEecCCeEEEEeCcccCCcccccceEe
Confidence            35778899999999984 4689999987    44433322 1111 11123455667999888888 34     456777


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCC-------CCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEE
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD-------PKDSISCFALR-GSHLFSASGGKISIFSLETFQTLAT  540 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~  540 (701)
                      |..++..              ........ ..+...       +...+..+... |..+..+....+..||..+......
T Consensus       320 d~~t~~W--------------~~~~~~~~-~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~  384 (656)
T 1k3i_A          320 SPSSKTW--------------TSLPNAKV-NPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS  384 (656)
T ss_dssp             ETTTTEE--------------EEETTSCS-GGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred             CCCCCcc--------------eeCCCccc-cccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec
Confidence            6544321              10000000 000000       11222222222 3333222245788999887664332


Q ss_pred             ecCCC---------CCeEEEEEcC-CC-eEEEEeCCC-----------cEEEEeCCCCceEEee--cCCCCCe-EEEEEe
Q 005342          541 FANPP---------PIATYFILLP-QD-LFAFGFDDS-----------SILVHCPCTKKTKAKL--KGHQNRI-TCLAYS  595 (701)
Q Consensus       541 ~~~~~---------~~i~~l~~sp-dg-~l~~gs~dg-----------~I~iwd~~~~~~~~~l--~~h~~~V-~~v~~s  595 (701)
                      ...+.         ..-.++.+.. ++ .+++|+.++           .|.+||..+.......  ..+.... .+++..
T Consensus       385 ~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l  464 (656)
T 1k3i_A          385 AGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVL  464 (656)
T ss_dssp             EEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEEC
T ss_pred             CCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEEC
Confidence            22111         1234455544 56 777777532           6888998877654433  1122222 344666


Q ss_pred             cCCCEEEEEeCC-----------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342          596 LSLNVLVSSGAD-----------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI  655 (701)
Q Consensus       596 pdg~~l~s~s~D-----------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg  655 (701)
                      |++++++.|+.+           ..+.+||..+++-..   +.......    .......+.|||+.++.|
T Consensus       465 ~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~---~~~~~~~R----~~hs~a~ll~dg~v~v~G  528 (656)
T 1k3i_A          465 PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK---QNPNSIVR----VYHSISLLLPDGRVFNGG  528 (656)
T ss_dssp             TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE---CCCCSSCC----CTTEEEEECTTSCEEEEE
T ss_pred             CCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee---cCCCCCcc----ccccHhhcCCCcEEEecC
Confidence            899999998854           568999998864222   22121111    233455677999999986

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.02  E-value=0.02  Score=60.30  Aligned_cols=235  Identities=10%  Similarity=-0.010  Sum_probs=138.7

Q ss_pred             eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccce
Q 005342          406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNM  484 (701)
Q Consensus       406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~  484 (701)
                      +|+.+.. ..|+..++.    ......+.    .....+..++|++.+..|+.+.. ++.|..+++....          
T Consensus        85 ~ll~~~~-~~I~~i~l~----~~~~~~~~----~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~----------  145 (400)
T 3p5b_L           85 YLFFTNR-HEVRKMTLD----RSEYTSLI----PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH----------  145 (400)
T ss_dssp             EEEEEET-TEEEEECTT----SCSCEEEE----CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred             eeEEecc-ceeEEEccC----CcceeEec----cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCC----------
Confidence            4444433 677777876    33322222    13467899999997777766655 5777777653210          


Q ss_pred             eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eE
Q 005342          485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF  559 (701)
Q Consensus       485 ~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l  559 (701)
                           .......+   + .........++++  +..|+.+.  .+.|.+.|+........+.........++++|.+ .|
T Consensus       146 -----~~~~~~~~---~-~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l  216 (400)
T 3p5b_L          146 -----GVSSYDTV---I-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM  216 (400)
T ss_dssp             -------CCCEEE---E-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEE
T ss_pred             -----CCCcceEE---E-eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeE
Confidence                 00001111   1 1223456778887  56666555  6899999997655444444344557899999966 44


Q ss_pred             EEEe-C-CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCC
Q 005342          560 AFGF-D-DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE  636 (701)
Q Consensus       560 ~~gs-~-dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~  636 (701)
                      +... . .+.|...++............-...+.++++|++..|+.+ +..+.|..+|+.....   ..+.... +..  
T Consensus       217 y~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~-~~l--  290 (400)
T 3p5b_L          217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDE-KRL--  290 (400)
T ss_dssp             EEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC---EEEEECS-STT--
T ss_pred             EEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc---EEEEeCC-CCC--
Confidence            4433 3 4789999986543333333333567999999977766554 4567999999876432   1221111 111  


Q ss_pred             CCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          637 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       637 ~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                       ....++++. .+.++.+- ..+.|..+|..+|+.+..+..
T Consensus       291 -~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          291 -AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE  329 (400)
T ss_dssp             -SSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred             -CCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence             334567763 23333343 577899999888887776654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.96  E-value=0.0073  Score=59.00  Aligned_cols=203  Identities=7%  Similarity=0.011  Sum_probs=121.5

Q ss_pred             CCCc-eEEEEEcCCCCeEEE-EcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          391 DNNQ-SRESTSLPDADSAVC-AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s-~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      +-.. +..++|.|++..|++ ...++.|...|..    ......+.  .. .......+++.+++.++++.-.++.+.++
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~----g~v~~~i~--l~-g~~D~EGIa~~~~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN----GDLIRTIP--LD-FVKDLETIEYIGDNQFVISDERDYAIYVI   96 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT----CCEEEEEE--CS-SCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC----CCEEEEEe--cC-CCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence            4434 899999998765554 6667777777774    22223332  22 23578889999999866665557888888


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecc-cCCCCCCeEEEEec--CCEEEEEe--CC-eEEEEeC-CCCcEEEEe
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDI-AADPKDSISCFALR--GSHLFSAS--GG-KISIFSL-ETFQTLATF  541 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~v~~l~~s--~~~l~s~s--dg-~I~iwd~-~~~~~~~~~  541 (701)
                      ++.....     +       +..   ......+ ..........++++  ++.|+++.  +. .|+.|+- .....+..+
T Consensus        97 ~v~~~~~-----i-------~~~---~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~  161 (255)
T 3qqz_A           97 SLTPNSE-----V-------KIL---KKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHIS  161 (255)
T ss_dssp             EECTTCC-----E-------EEE---EEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEE
T ss_pred             EcCCCCe-----e-------eee---eeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeee
Confidence            7633210     0       000   0000001 11234567899998  65666666  33 5566651 111122222


Q ss_pred             c-------CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCC---------CCeEEEEEecCCCEEEE
Q 005342          542 A-------NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQ---------NRITCLAYSLSLNVLVS  603 (701)
Q Consensus       542 ~-------~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~v~~spdg~~l~s  603 (701)
                      .       .....+.+++++|..  +++....+..+..+|.. ++.+..+.-..         .....|+|.|+|++.+ 
T Consensus       162 ~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-  239 (255)
T 3qqz_A          162 KDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-  239 (255)
T ss_dssp             ECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-
T ss_pred             cchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-
Confidence            1       123356899999987  66677777889999965 55655443211         2568899999998554 


Q ss_pred             EeCCCeEEEEECCC
Q 005342          604 SGADAQLCVWDAVG  617 (701)
Q Consensus       604 ~s~D~~I~vwd~~~  617 (701)
                      .|+.+.++++....
T Consensus       240 vsE~n~~y~f~~~~  253 (255)
T 3qqz_A          240 VSEPNRFYRFTPQS  253 (255)
T ss_dssp             EETTTEEEEEEC--
T ss_pred             EcCCceEEEEEecC
Confidence            47888888886544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.95  E-value=0.00083  Score=74.73  Aligned_cols=100  Identities=13%  Similarity=0.137  Sum_probs=70.6

Q ss_pred             CCeEEEEeCCCCcEEEEecCCCCC-------------------------------------e-EEEEEcCCC-eEEEEeC
Q 005342          524 GGKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQD-LFAFGFD  564 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~~~~-------------------------------------i-~~l~~spdg-~l~~gs~  564 (701)
                      +|.|+-+|.++|+.+.++......                                     + ..+++.++. .++.++.
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence            589999999999998877633211                                     0 145677777 7777766


Q ss_pred             C----------------CcEEEEeCCCCceEEeecC--CC--------CCeEEEEEe-cCC---CEEEEEeCCCeEEEEE
Q 005342          565 D----------------SSILVHCPCTKKTKAKLKG--HQ--------NRITCLAYS-LSL---NVLVSSGADAQLCVWD  614 (701)
Q Consensus       565 d----------------g~I~iwd~~~~~~~~~l~~--h~--------~~V~~v~~s-pdg---~~l~s~s~D~~I~vwd  614 (701)
                      +                +.|..+|.++|+.+-.++.  |.        .++. +... .+|   ..++.++.+|.+++.|
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD  339 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLD  339 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEE
Confidence            5                3899999999998876654  21        1121 2222 567   5677899999999999


Q ss_pred             CCCCeeeeee
Q 005342          615 AVGWKKLCSK  624 (701)
Q Consensus       615 ~~~g~~~~~~  624 (701)
                      ..+|+.+...
T Consensus       340 ~~tG~~lw~~  349 (599)
T 1w6s_A          340 RTDGALVSAN  349 (599)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCCEeecc
Confidence            9999866443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.94  E-value=0.0024  Score=70.99  Aligned_cols=81  Identities=19%  Similarity=0.162  Sum_probs=52.0

Q ss_pred             CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEE
Q 005342          565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ  644 (701)
Q Consensus       565 dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~  644 (701)
                      +|.|+.||+.+++.+-+...+ .++..-.....+.+++.++.|+.++.||.++|+.+-...+.   .+.     ...-+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~---~g~-----~a~P~~  535 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG---SGI-----VSPPIT  535 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS---SCC-----CSCCEE
T ss_pred             cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC---CCc-----ccCceE
Confidence            578999999999987665532 22222222234667888999999999999999765433322   221     112256


Q ss_pred             EcCCCCEEEE
Q 005342          645 FHPDQIHLLS  654 (701)
Q Consensus       645 ~spdg~~l~s  654 (701)
                      |..+|+..++
T Consensus       536 y~~~G~qYv~  545 (582)
T 1flg_A          536 WEQDGEQYLG  545 (582)
T ss_dssp             EEETTEEEEE
T ss_pred             EEECCEEEEE
Confidence            6778875554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.89  E-value=0.0002  Score=81.23  Aligned_cols=241  Identities=7%  Similarity=0.010  Sum_probs=132.1

Q ss_pred             EEEEcC-CCCeEEEEcCCC-----------cEEEEeccccCCCCceeEee-cCCCCCCCCEEEEEEecCCCEEEEEEC-C
Q 005342          397 ESTSLP-DADSAVCAKSLE-----------KSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ-T  462 (701)
Q Consensus       397 ~l~~sp-dg~~l~s~s~d~-----------~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~-d  462 (701)
                      ..++.| +|+.++.|+.+.           .+.+||..    +++...+. ++. .+.....++++.++|+.++.|+. +
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~----t~~w~~~~~~~~-~~~~~~~~~~~~~~g~lyv~GG~~~  264 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPS----TGIVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGNDA  264 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTT----TCCBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSSST
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCC----CCcEEeCcccCC-CCCCccccccCCCCCCEEEeCCCCC
Confidence            466777 889989887543           57888887    44433322 111 12233445778899999888885 4


Q ss_pred             CcEEEEecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEec-CCEEEEEe--C-----CeEEEEeCC
Q 005342          463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR-GSHLFSAS--G-----GKISIFSLE  533 (701)
Q Consensus       463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s-~~~l~s~s--d-----g~I~iwd~~  533 (701)
                      +.+.+||..+                     ++.... .+. ..........+. |+.++.|+  +     ..+.+||..
T Consensus       265 ~~v~~yd~~t---------------------~~W~~~~~~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          265 KKTSLYDSSS---------------------DSWIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             TCEEEEEGGG---------------------TEEEECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             CceEEecCcC---------------------CceeECCCCC-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            5777776533                     321110 011 122223344453 77777776  3     468999998


Q ss_pred             CCcEEEEe----cCCCCCeEEEEEcCCC-eEEEEeCCC---------cEEEEeCCCCceEEeecCCC---------CCeE
Q 005342          534 TFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDS---------SILVHCPCTKKTKAKLKGHQ---------NRIT  590 (701)
Q Consensus       534 ~~~~~~~~----~~~~~~i~~l~~spdg-~l~~gs~dg---------~I~iwd~~~~~~~~~l~~h~---------~~V~  590 (701)
                      +++-...-    ......-....+..++ .++.|+.+|         .+..||..+.........+.         ..-.
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence            77533220    0000000011223445 445554443         56788887765443322121         1234


Q ss_pred             EEEEec-CCCEEEEEeCCC-----------eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec
Q 005342          591 CLAYSL-SLNVLVSSGADA-----------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE  657 (701)
Q Consensus       591 ~v~~sp-dg~~l~s~s~D~-----------~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D  657 (701)
                      ++.|.. ++++++.|+.++           .|.+||..+..-.... ...++..     ..-.+....|+|++++.| .+
T Consensus       403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~-----R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFA-----RTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSC-----CBSCEEEECTTSCEEEECCBS
T ss_pred             eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCC-----cccCCeEECCCCCEEEECCcc
Confidence            555654 777888887532           6888888875421111 0012111     112345667899999985 32


Q ss_pred             -----------CeEEEEECCCCce
Q 005342          658 -----------GQIDVYEAPTLNH  670 (701)
Q Consensus       658 -----------g~I~iwd~~~g~~  670 (701)
                                 ..+.+||..+++-
T Consensus       477 ~~~~~~~~~~~~~v~~ydp~t~~W  500 (656)
T 1k3i_A          477 RGIPFEDSTPVFTPEIYVPEQDTF  500 (656)
T ss_dssp             BCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred             cCcCcCCCCcccceEEEcCCCCce
Confidence                       4689999977653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.85  E-value=0.0033  Score=69.86  Aligned_cols=141  Identities=10%  Similarity=-0.024  Sum_probs=90.9

Q ss_pred             CeEEEEeCCCCcEEEEecC--CC--------CCeEEEEEc-CCC----eEEEEeCCCcEEEEeCCCCceEEeecCCC---
Q 005342          525 GKISIFSLETFQTLATFAN--PP--------PIATYFILL-PQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQ---  586 (701)
Q Consensus       525 g~I~iwd~~~~~~~~~~~~--~~--------~~i~~l~~s-pdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~---  586 (701)
                      +.|.-+|..+|+.+..++.  |.        .++ -+... .+|    .++.++.+|.++++|..+|+.+..+....   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            5899999999999988753  21        111 11221 455    57789999999999999998876554321   


Q ss_pred             ----------CC--------------------------------eEEEEEecCCCEEEEEe-------------------
Q 005342          587 ----------NR--------------------------------ITCLAYSLSLNVLVSSG-------------------  605 (701)
Q Consensus       587 ----------~~--------------------------------V~~v~~spdg~~l~s~s-------------------  605 (701)
                                .+                                -..++++|+..+++...                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      00                                01346677555444322                   


Q ss_pred             --------------CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce
Q 005342          606 --------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH  670 (701)
Q Consensus       606 --------------~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~  670 (701)
                                    .+|.|+.||+.+|+..-.....          .++..-.....+..++.+ .|+.++.||.++|+.
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~----------~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH----------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES----------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC----------CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence                          3688999999999755433322          111111112235566666 799999999999999


Q ss_pred             eeeeee
Q 005342          671 TSQVLL  676 (701)
Q Consensus       671 ~~~l~~  676 (701)
                      +..+..
T Consensus       520 lW~~~~  525 (582)
T 1flg_A          520 LWKFQT  525 (582)
T ss_dssp             EEEEEC
T ss_pred             EEEecC
Confidence            988875

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.78  E-value=0.046  Score=55.76  Aligned_cols=248  Identities=8%  Similarity=-0.009  Sum_probs=133.9

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-cCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                      +.++.|.+++..+++| .++.| +...+    .++.+... .+.......+.++.+++ +. +++++.+|.+..-     
T Consensus        38 ~~~v~~~~~~~~~~~G-~~g~i-~~s~D----gG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~S-----  104 (327)
T 2xbg_A           38 ILDMSFIDRHHGWLVG-VNATL-METRD----GGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLHT-----  104 (327)
T ss_dssp             EEEEEESSSSCEEEEE-TTTEE-EEESS----TTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEEE-----
T ss_pred             EEEEEECCCCcEEEEc-CCCeE-EEeCC----CCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEEE-----
Confidence            8889998888888855 45654 33333    44434322 21111244688999986 44 4445556644432     


Q ss_pred             CccccccccceeeEEeeCCCCeEEeec-ccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEE-EEecCCCCCeE
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTND-IAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTL-ATFANPPPIAT  549 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~-~~~~~~~~~i~  549 (701)
                                       .+.|+-.... ....+...+..+.+.  +..++++.+|.|..- ...|+.- ....+....+.
T Consensus       105 -----------------~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~  166 (327)
T 2xbg_A          105 -----------------TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMR  166 (327)
T ss_dssp             -----------------SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEE
T ss_pred             -----------------CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceE
Confidence                             1222211110 000122446677766  444554446654321 2223322 22233456788


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEE-EeC--CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342          550 YFILLPQD-LFAFGFDDSSILV-HCP--CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF  625 (701)
Q Consensus       550 ~l~~spdg-~l~~gs~dg~I~i-wd~--~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~  625 (701)
                      .+++.|++ +++++. +|.++. .|-  .+-+.+.  .+....+..++++|++..++ ++.+|.+++++...|+.     
T Consensus       167 ~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t-----  237 (327)
T 2xbg_A          167 NLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN-----  237 (327)
T ss_dssp             EEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE-----
T ss_pred             EEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe-----
Confidence            99999999 776664 455444 442  2223332  23456788999999987654 55678888775333321     


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee------e-eeEEEEE
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL------L-ISHIMFV  683 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~------~-i~~~~fs  683 (701)
                      ...+.....+....+.++.+.|++..++++.++.+ .+....|+.-..+.      . +.++.|.
T Consensus       238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~  301 (327)
T 2xbg_A          238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF  301 (327)
T ss_dssp             ECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred             eEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence            11111110001145889999999998888888877 45555565444332      2 6666664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.76  E-value=0.017  Score=58.96  Aligned_cols=230  Identities=10%  Similarity=0.031  Sum_probs=125.4

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      +..+.|+| +..++ ++.++.|.. ..+    .++.+............+..+.+.+++..+++ +.+|.+..-      
T Consensus        82 ~~~i~~~~-~~~~~-~g~~g~i~~-S~D----gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~g~v~~S------  147 (327)
T 2xbg_A           82 FNSVSFQG-NEGWI-VGEPPIMLH-TTD----GGQSWSQIPLDPKLPGSPRLIKALGNGSAEMI-TNVGAIYRT------  147 (327)
T ss_dssp             EEEEEEET-TEEEE-EEETTEEEE-ESS----TTSSCEECCCCTTCSSCEEEEEEEETTEEEEE-ETTCCEEEE------
T ss_pred             EEEEEecC-CeEEE-EECCCeEEE-ECC----CCCCceECccccCCCCCeEEEEEECCCCEEEE-eCCccEEEE------
Confidence            78888986 44444 445564433 222    44444422111112345788888877765544 455644321      


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEE-EeC--CCCcEEEEecCCCCCeE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISI-FSL--ETFQTLATFANPPPIAT  549 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~i-wd~--~~~~~~~~~~~~~~~i~  549 (701)
                                      .+.|.-... ........+..+++.  +.+++++.+|.+.. .|-  .+.+.+.  ......+.
T Consensus       148 ----------------~DgG~tW~~-~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~  208 (327)
T 2xbg_A          148 ----------------KDSGKNWQA-LVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLH  208 (327)
T ss_dssp             ----------------SSTTSSEEE-EECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEE
T ss_pred             ----------------cCCCCCCEE-eecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccc
Confidence                            122221111 112344568888887  66666665555444 442  2223332  23456788


Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeec-C---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342          550 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK-G---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF  625 (701)
Q Consensus       550 ~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~-~---h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~  625 (701)
                      .+++++++.+++++.+|.+++.+...++.-..+. +   +...+.++++.|++..++++. ++.| .+....|+.  -..
T Consensus       209 ~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~t--W~~  284 (327)
T 2xbg_A          209 NMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQT--WQQ  284 (327)
T ss_dssp             EEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSS--CEE
T ss_pred             eeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcc--cEE
Confidence            9999998833345567888877433344333222 1   223588999998888766554 6766 344554531  111


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  665 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~  665 (701)
                      +. ......   ..+.++.|.+++..+++|.+|.|.-++-
T Consensus       285 ~~-~~~~~~---~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          285 DV-DVKKVP---SNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             CG-GGTTSS---SCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             cC-ccCCCC---CCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            21 111111   5678899987778777789998776653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.74  E-value=0.0094  Score=63.55  Aligned_cols=237  Identities=9%  Similarity=0.027  Sum_probs=130.3

Q ss_pred             eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-C----cEEEE
Q 005342          395 SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-A----THKLW  468 (701)
Q Consensus       395 V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g----~i~vw  468 (701)
                      ...++++| ++..|..+...+.|..+|+.    .+....+..    .......++|+++|++|+++... +    .+.+.
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~----~~~v~~~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~  210 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFE----KEYVSTVYS----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL  210 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETT----TTEEEEEEC----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECC----CCEEEEEec----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence            56889998 45556655554788888886    544444321    34568899999999966666552 2    22222


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecC-
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFAN-  543 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~-  543 (701)
                      +...      ..           .....+..      ......++++  +..|+.+.  ++.|..+|..++........ 
T Consensus       211 ~~~g------~~-----------~~~~~l~~------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~  267 (430)
T 3tc9_A          211 TRES------GF-----------KVITELTK------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ  267 (430)
T ss_dssp             EGGG------TS-----------CSEEEEEE------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             eCCC------ce-----------eeeeeecc------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC
Confidence            2110      00           00011110      1234466676  34455444  68999999977654222221 


Q ss_pred             CCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCCC--Cce--EEeecCC---------------CCCeE-EEEEe------
Q 005342          544 PPPIATYFILLPQD-LFA-FGFDDSSILVHCPCT--KKT--KAKLKGH---------------QNRIT-CLAYS------  595 (701)
Q Consensus       544 ~~~~i~~l~~spdg-~l~-~gs~dg~I~iwd~~~--~~~--~~~l~~h---------------~~~V~-~v~~s------  595 (701)
                      .......++++|+| +++ +-...+.|+.++...  +..  +..+.+.               -.... .++..      
T Consensus       268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~  347 (430)
T 3tc9_A          268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKG  347 (430)
T ss_dssp             SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTT
T ss_pred             CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccc
Confidence            22346799999999 554 445677899987653  221  1222211               01123 45553      


Q ss_pred             --cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec----cCCC-C------CCCCCeEEEEEcCC-CCEEEEE-ecCeE
Q 005342          596 --LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF----QTGL-V------PETTIVNHIQFHPD-QIHLLSI-HEGQI  660 (701)
Q Consensus       596 --pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~----~~~~-~------~~~~~v~~v~~spd-g~~l~sg-~Dg~I  660 (701)
                        ++|.+.++-...+.|+.++ ..|...   .+...    ..+. .      ..-.....++++|+ +.++++- ..+.|
T Consensus       348 ~D~~g~lyvaD~~n~~I~~i~-~~G~v~---~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rI  423 (430)
T 3tc9_A          348 SSDEYDFYFCDRENHCIRILT-PQGRVT---TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRI  423 (430)
T ss_dssp             SSCCEEEEEEEGGGTEEEEEC-TTSEEE---EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEE
T ss_pred             cCCCCeEEEEECCCcEEEEEC-CCCcEE---EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence              3466666666678899988 445322   11100    0010 0      00035789999995 5444443 56778


Q ss_pred             EEEECC
Q 005342          661 DVYEAP  666 (701)
Q Consensus       661 ~iwd~~  666 (701)
                      +.++++
T Consensus       424 r~i~~e  429 (430)
T 3tc9_A          424 RKIGYE  429 (430)
T ss_dssp             EEEEEC
T ss_pred             EEEccC
Confidence            887764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.74  E-value=0.026  Score=57.36  Aligned_cols=224  Identities=10%  Similarity=-0.016  Sum_probs=129.4

Q ss_pred             CcEEEEeccccCCCCc-eeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeC
Q 005342          414 EKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQP  491 (701)
Q Consensus       414 ~~v~iw~~~~~~~~~~-~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~  491 (701)
                      ..|+..++..    .. ...+..   .....+.++.|.+.+..|..+.. .+.|..++..+..                 
T Consensus        13 ~~I~~i~l~~----~~~~~~~~~---~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~-----------------   68 (318)
T 3sov_A           13 RDLRLVDATN----GKENATIVV---GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-----------------   68 (318)
T ss_dssp             EEEEEEETTC----TTSCCEEEE---EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSS-----------------
T ss_pred             CeEEEEECCC----CceEEEEEe---cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCC-----------------
Confidence            5688888862    21 111111   01245778999987666665554 6777777653210                 


Q ss_pred             CCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe--C
Q 005342          492 SSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF--D  564 (701)
Q Consensus       492 ~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs--~  564 (701)
                      ....++.     ..-.....++++  +..|+.+.  .+.|.++++........+.........++++|.+ .++...  .
T Consensus        69 ~~~~~~~-----~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~  143 (318)
T 3sov_A           69 SVQNVVV-----SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE  143 (318)
T ss_dssp             CCCEEEE-----ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSS
T ss_pred             ceEEEEc-----CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence            0001111     111234567776  55555554  6899999986543333333344567899999976 544444  3


Q ss_pred             CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEE
Q 005342          565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI  643 (701)
Q Consensus       565 dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v  643 (701)
                      .+.|+..++............-...+.++++|++..|+ +-+..+.|..+|+.....   ..+.   .+..   ....++
T Consensus       144 ~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~---~~~~---~~P~gl  214 (318)
T 3sov_A          144 VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAVV---KGSL---PHPFAL  214 (318)
T ss_dssp             SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEE---CSCC---SCEEEE
T ss_pred             CCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce---EEEe---cCCC---CCceEE
Confidence            57899998764332222222234578999999666554 445678999999875431   1121   1121   445677


Q ss_pred             EEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          644 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       644 ~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ++.. +..+.+- ..+.|..++..+|+..+.+..
T Consensus       215 av~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          215 TLFE-DILYWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             EEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             EEeC-CEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence            7753 3333343 578899999988887666543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.69  E-value=0.02  Score=59.95  Aligned_cols=194  Identities=8%  Similarity=-0.039  Sum_probs=118.0

Q ss_pred             eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCC
Q 005342          395 SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~  472 (701)
                      +..++|++.+. ++++-...+.|..++..    .+....+..   ........+++.+.+..|+.+.. .+.|.+.+++.
T Consensus       118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~----g~~~~~~~~---~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg  190 (386)
T 3v65_B          118 AIALDFHHRRELVFWSDVTLDRILRANLN----GSNVEEVVS---TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  190 (386)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT----SCCEEEEEC---SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred             cEEEEEecCCCeEEEEeCCCCcEEEEecC----CCCcEEEEe---CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence            67899997655 44555567888888886    333333221   11234567888886666655544 56677665421


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--C-CeEEEEeCCCCcEEEEecCCCCC
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G-GKISIFSLETFQTLATFANPPPI  547 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--d-g~I~iwd~~~~~~~~~~~~~~~~  547 (701)
                      .                   ....+   + .........++++  +..|+.+.  . +.|..+++............-..
T Consensus       191 ~-------------------~~~~l---~-~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~  247 (386)
T 3v65_B          191 A-------------------HRKVL---L-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW  247 (386)
T ss_dssp             C-------------------SCEEE---E-CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred             C-------------------ceEEe---e-cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC
Confidence            1                   11111   1 1223456788888  55555554  4 78999998543332222323345


Q ss_pred             eEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342          548 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       548 i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      ...++++|++  ++++-+..+.|..+|+........+.........+++ ..+.++++....+.|..+|..+|+
T Consensus       248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence            6899999876  5555566778999998754333333333445678888 445566666778899999977764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.69  E-value=0.028  Score=57.94  Aligned_cols=153  Identities=8%  Similarity=-0.027  Sum_probs=101.4

Q ss_pred             CCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEE
Q 005342          507 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA  580 (701)
Q Consensus       507 ~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~  580 (701)
                      ..+..++|+  ++.|+.+.  .+.|+.+++..+.....+.........+++++.+  ++++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            347788988  56666655  6899999997665444333233445789999865  55666677899999987544333


Q ss_pred             eecCCCCCeEEEEEecCCCEE-EEEeCC-CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--e
Q 005342          581 KLKGHQNRITCLAYSLSLNVL-VSSGAD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H  656 (701)
Q Consensus       581 ~l~~h~~~V~~v~~spdg~~l-~s~s~D-~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~  656 (701)
                      .+...-...+.++++|.+..| ++-... +.|...++.....   ..+   .....   ...+.++++|++..|+.+  .
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~---~~~~~---~~PnGla~d~~~~~lY~aD~~  223 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RII---ADTHL---FWPNGLTIDYAGRRMYWVDAK  223 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EES---CCSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc---EEE---EECCC---CCcceEEEeCCCCEEEEEECC
Confidence            333333567899999965544 444445 7899999876421   111   11111   557899999988777765  4


Q ss_pred             cCeEEEEECCCC
Q 005342          657 EGQIDVYEAPTL  668 (701)
Q Consensus       657 Dg~I~iwd~~~g  668 (701)
                      .+.|..+|+...
T Consensus       224 ~~~I~~~~~dG~  235 (349)
T 3v64_C          224 HHVIERANLDGS  235 (349)
T ss_dssp             TTEEEEEETTSC
T ss_pred             CCEEEEEeCCCC
Confidence            678999998643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.68  E-value=0.036  Score=63.52  Aligned_cols=234  Identities=10%  Similarity=-0.011  Sum_probs=135.1

Q ss_pred             eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccce
Q 005342          406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNM  484 (701)
Q Consensus       406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~  484 (701)
                      +|+.+.. ..|+..++.    ......+..    ....+..++|.+.+..|+.... .+.|+.+++.....         
T Consensus       397 ~Ll~an~-~~Ir~i~l~----~~~~~~l~~----~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~---------  458 (791)
T 3m0c_C          397 YLFFTNR-HEVRKMTLD----RSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---------  458 (791)
T ss_dssp             EEEEECB-SSEEEECTT----SCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred             ccccccc-cceeEeecc----CCcceeeec----CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCC---------
Confidence            3443333 557777765    333333221    3467889999986666665554 57777776532100         


Q ss_pred             eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eE
Q 005342          485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF  559 (701)
Q Consensus       485 ~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l  559 (701)
                            ......+   + .........++++  ++.|+.+.  .+.|.+.++........+.........|+++|.+ .|
T Consensus       459 ------~~~~~~v---i-~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~L  528 (791)
T 3m0c_C          459 ------VSSYDTV---I-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM  528 (791)
T ss_dssp             ---------CEEE---E-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred             ------CcceeEE---E-ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCE
Confidence                  0001111   1 1123345678887  66666665  6899999996554433333344567899999975 44


Q ss_pred             -EEEeCC-CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCC
Q 005342          560 -AFGFDD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE  636 (701)
Q Consensus       560 -~~gs~d-g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~  636 (701)
                       ++-..+ +.|...++........+...-...+.|++++.+..|+.+ ...+.|...++......  ..+. - .+..  
T Consensus       529 YwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~--~v~~-~-~~~l--  602 (791)
T 3m0c_C          529 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--TILE-D-EKRL--  602 (791)
T ss_dssp             EEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEEE-C-TTTT--
T ss_pred             EEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE--EEec-C-CCcc--
Confidence             443333 789999986544433333333578999999876655544 45678999998764321  1111 1 0111  


Q ss_pred             CCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCceeeeeee
Q 005342          637 TTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       637 ~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                       ....+|++.  +..|+..  ..+.|...|..+|+.+..+..
T Consensus       603 -~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~  641 (791)
T 3m0c_C          603 -AHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE  641 (791)
T ss_dssp             -SSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             -CCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence             234566664  3455554  567888888888877666643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.64  E-value=0.026  Score=60.06  Aligned_cols=236  Identities=10%  Similarity=0.003  Sum_probs=131.8

Q ss_pred             eEEEEEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC----c-EEE
Q 005342          395 SRESTSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA----T-HKL  467 (701)
Q Consensus       395 V~~l~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg----~-i~v  467 (701)
                      ...++|+|+  +..|..+...+.|+.++..    .+....+..    .......++++++|+ |+.+...+    . +..
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~----~g~v~~~~~----~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~  211 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFV----NQYVDIKTT----NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYL  211 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETT----TTEEEEECC----CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEE
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECC----CCEEEEeec----CCCCccEEEECCCCC-EEEEcCCCCcccceEEE
Confidence            568999995  4445444444889999986    555444321    345689999999999 55544422    1 222


Q ss_pred             EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEe-c
Q 005342          468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATF-A  542 (701)
Q Consensus       468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~-~  542 (701)
                      .+....      .           .......      .......++++  +..|+.+.  ++.|+.+|..++.....+ .
T Consensus       212 ~~~~~~------~-----------~~~~~~~------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~  268 (433)
T 4hw6_A          212 FTRASG------F-----------TERLSLC------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM  268 (433)
T ss_dssp             ECGGGT------T-----------CCEEEEE------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE
T ss_pred             EECCCC------e-----------ecccccc------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec
Confidence            211000      0           0001111      11233455666  34455444  689999999877652222 2


Q ss_pred             C-CCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCC--CCce--EEeecCC---------------CCCeEEEEE------
Q 005342          543 N-PPPIATYFILLPQD-LFA-FGFDDSSILVHCPC--TKKT--KAKLKGH---------------QNRITCLAY------  594 (701)
Q Consensus       543 ~-~~~~i~~l~~spdg-~l~-~gs~dg~I~iwd~~--~~~~--~~~l~~h---------------~~~V~~v~~------  594 (701)
                      . .......++++|+| .|+ +-...+.|+.++..  ++..  ...+.+.               -.....+++      
T Consensus       269 ~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y  348 (433)
T 4hw6_A          269 MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAY  348 (433)
T ss_dssp             CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGG
T ss_pred             cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccc
Confidence            1 22233579999999 554 44556789998765  3321  1122221               123567899      


Q ss_pred             ---ecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc----CCCCC-------CCCCeEEEEEc-CCCCEEEEE-ecC
Q 005342          595 ---SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ----TGLVP-------ETTIVNHIQFH-PDQIHLLSI-HEG  658 (701)
Q Consensus       595 ---spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~----~~~~~-------~~~~v~~v~~s-pdg~~l~sg-~Dg  658 (701)
                         .++|.+.++-...+.|+.++. +|...   .+....    .+...       .-.....|+++ ++|.++++- ..+
T Consensus       349 ~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~---t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~  424 (433)
T 4hw6_A          349 AGEEDEYDFYFCDRDSHTVRVLTP-EGRVT---TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH  424 (433)
T ss_dssp             TTSSCCEEEEEEETTTTEEEEECT-TSEEE---EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred             cccCCCCcEEEEECCCCEEEEECC-CCCEE---EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence               677877777777889999985 45321   111000    00000       01346789999 556555553 577


Q ss_pred             eEEEEECC
Q 005342          659 QIDVYEAP  666 (701)
Q Consensus       659 ~I~iwd~~  666 (701)
                      .|+.++++
T Consensus       425 rIr~i~~e  432 (433)
T 4hw6_A          425 RVRKIAPE  432 (433)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecC
Confidence            78887764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.58  E-value=0.079  Score=53.63  Aligned_cols=152  Identities=9%  Similarity=-0.034  Sum_probs=97.3

Q ss_pred             CCeEEEEec--CCEEEEEe--CCeEEEEeCCC----CcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC
Q 005342          507 DSISCFALR--GSHLFSAS--GGKISIFSLET----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK  576 (701)
Q Consensus       507 ~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~----~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~  576 (701)
                      ..+..++|+  ++.|+.+.  ++.|..+++.+    ......+...-.....+++++.+  ++++-..++.|.++|....
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            457788998  56666665  68999999875    22222232222345789999755  5566677889999998754


Q ss_pred             ceEEeecCCCCCeEEEEEecCCCEEEEEeC-C-CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       577 ~~~~~l~~h~~~V~~v~~spdg~~l~s~s~-D-~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      .....+...-.....++++|.+..|+.+.. . +.|...++.....   ..+.   ....   ...+.++++|++..|+.
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~~~---~~~~---~~P~gla~d~~~~~lY~  180 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLV---TENI---QWPNGITLDLLSGRLYW  180 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEE---CSSC---SCEEEEEEETTTTEEEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EEEE---ECCC---CCceEEEEeccCCEEEE
Confidence            433333323346789999996665544443 3 7899988865321   1121   1111   56789999998887776


Q ss_pred             E--ecCeEEEEECCC
Q 005342          655 I--HEGQIDVYEAPT  667 (701)
Q Consensus       655 g--~Dg~I~iwd~~~  667 (701)
                      +  ..+.|..+|+..
T Consensus       181 ~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          181 VDSKLHSISSIDVNG  195 (316)
T ss_dssp             EETTTTEEEEEETTS
T ss_pred             EECCCCeEEEEecCC
Confidence            5  467899999864

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.58  E-value=0.028  Score=57.09  Aligned_cols=185  Identities=11%  Similarity=0.141  Sum_probs=115.6

Q ss_pred             CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC----CCE--EEEEEC----CCcEEEEecCC
Q 005342          403 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS----GDF--LVALTQ----TATHKLWKWQS  472 (701)
Q Consensus       403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd----g~~--l~s~s~----dg~i~vwd~~~  472 (701)
                      ....++.....+.+.++|+.    ......+.      .+.+..+..-|+    |+.  ++.++.    ++++.+|++  
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~----G~~l~~~~------~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i--  106 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLD----GKMLHSYN------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI--  106 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETT----SCEEEEEC------CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE--
T ss_pred             CccEEEEEcCCCCEEEEcCC----CcEEEEcc------CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE--
Confidence            34556666677899999995    43333321      245666666552    332  333333    478999977  


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccC------CCCCCeEEEEe--c---CC-EEEEEe-CCeEEEEeCC------
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAA------DPKDSISCFAL--R---GS-HLFSAS-GGKISIFSLE------  533 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~v~~l~~--s---~~-~l~s~s-dg~I~iwd~~------  533 (701)
                                       |+.++.+..  +..      .....+..+++  +   +. ++++.. +|.+..|++.      
T Consensus       107 -----------------Dp~~~~l~~--i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~  167 (355)
T 3amr_A          107 -----------------DGKNGTLQS--MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY  167 (355)
T ss_dssp             -----------------CTTTCCEEE--CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred             -----------------CCCCCceee--ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence                             444444221  100      01134555666  4   44 455555 8999998872      


Q ss_pred             -CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-----CCceEEeec-CC-CCCeEEEEE--ecCCC-EE
Q 005342          534 -TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-----TKKTKAKLK-GH-QNRITCLAY--SLSLN-VL  601 (701)
Q Consensus       534 -~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~-----~~~~~~~l~-~h-~~~V~~v~~--spdg~-~l  601 (701)
                       +++.++++.. .+.+-.+...+.. .|+++-++.-|..+|.+     +++.+..+. ++ ...+..+++  .++++ +|
T Consensus       168 ~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL  246 (355)
T 3amr_A          168 ISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL  246 (355)
T ss_dssp             EEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred             ccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence             3456778774 4578889999888 99999999888888855     345665543 22 236888888  45556 55


Q ss_pred             EEEe-CCCeEEEEECC-CCe
Q 005342          602 VSSG-ADAQLCVWDAV-GWK  619 (701)
Q Consensus       602 ~s~s-~D~~I~vwd~~-~g~  619 (701)
                      ++++ .+++..|||.. +.+
T Consensus       247 ivSsQG~~s~~Vydr~~~~~  266 (355)
T 3amr_A          247 MASSQGNSSYAIYDRQGKNK  266 (355)
T ss_dssp             EEEEGGGTEEEEEESSTTCC
T ss_pred             EEEcCCCCEEEEEECCCCCc
Confidence            5555 67899999997 443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.56  E-value=0.034  Score=56.43  Aligned_cols=147  Identities=10%  Similarity=0.050  Sum_probs=96.9

Q ss_pred             CeEEEEeCC--CCcEEEEecC------CC-CCeEEEEE--cCC-C--eEEEEeCCCcEEEEeCC-------CCceEEeec
Q 005342          525 GKISIFSLE--TFQTLATFAN------PP-PIATYFIL--LPQ-D--LFAFGFDDSSILVHCPC-------TKKTKAKLK  583 (701)
Q Consensus       525 g~I~iwd~~--~~~~~~~~~~------~~-~~i~~l~~--spd-g--~l~~gs~dg~I~iwd~~-------~~~~~~~l~  583 (701)
                      ++|.+|++.  ++. +..+..      .. ..+..+++  +|. +  ++++...+|.+..|++.       +.+.++++.
T Consensus        99 n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           99 NTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            689999773  333 444421      11 45566777  774 4  78888999999999882       346677777


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEE--cCCCC-EEEE-E-ecC
Q 005342          584 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF--HPDQI-HLLS-I-HEG  658 (701)
Q Consensus       584 ~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~--spdg~-~l~s-g-~Dg  658 (701)
                      . .+.+..++..+....|+.+-+|.-|..++.....-.....+..+..++..  ..+..+++  .++++ +|++ + .++
T Consensus       178 l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~--aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          178 M-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLT--RDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             C-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBC--SCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             C-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccc--cCcceEEEEecCCCCEEEEEEcCCCC
Confidence            4 35688899999888999999987777777542110011223323333331  46788887  56666 5665 5 688


Q ss_pred             eEEEEECC-CCceeeeee
Q 005342          659 QIDVYEAP-TLNHTSQVL  675 (701)
Q Consensus       659 ~I~iwd~~-~g~~~~~l~  675 (701)
                      +..+||.+ +.+.+..+.
T Consensus       255 s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          255 SYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEEESSTTCCEEEEEE
T ss_pred             EEEEEECCCCCcEEEEEE
Confidence            99999996 677777774

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.53  E-value=0.02  Score=61.40  Aligned_cols=253  Identities=9%  Similarity=0.030  Sum_probs=136.4

Q ss_pred             eEEEEEcC-CCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEE-------ecCCCEEEEEECCC-c
Q 005342          395 SRESTSLP-DADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY-------SHSGDFLVALTQTA-T  464 (701)
Q Consensus       395 V~~l~~sp-dg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~-------spdg~~l~s~s~dg-~  464 (701)
                      ...++|+| ++..|+ +....+.|++.|..    .+.+..+.-...........++|       +++|++++++...+ .
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~----~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLK----NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETT----TTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECC----CCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            67899999 344444 44444678888876    55544433111112346899999       99999777776643 2


Q ss_pred             ------EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCC-
Q 005342          465 ------HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE-  533 (701)
Q Consensus       465 ------i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~-  533 (701)
                            +.+.+...    .|....        ...+..+.. +  .   ....++++  +..|+.+.  ++.|..+|+. 
T Consensus       217 ~~~~~~V~~i~r~~----~G~~~~--------~~~~~~v~~-~--~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~  278 (496)
T 3kya_A          217 GDESPSVYIIKRNA----DGTFDD--------RSDIQLIAA-Y--K---QCNGATIHPINGELYFNSYEKGQVFRLDLVD  278 (496)
T ss_dssp             GGGEEEEEEEECCT----TSCCST--------TSCEEEEEE-E--S---CCCCEEECTTTCCEEEEETTTTEEEEECHHH
T ss_pred             cccCceEEEEecCC----CCceee--------cccceeecc-C--C---CceEEEEcCCCCeEEEEECCCCEEEEEeccc
Confidence                  33443211    000000        000011111 1  1   22355666  45555554  6899999987 


Q ss_pred             ------CCcE-----------EEE-ec-CCCCCeEEEEEcCCC-eE-EEEeCCCcEEEEeC--CCCce--EEeecCC---
Q 005342          534 ------TFQT-----------LAT-FA-NPPPIATYFILLPQD-LF-AFGFDDSSILVHCP--CTKKT--KAKLKGH---  585 (701)
Q Consensus       534 ------~~~~-----------~~~-~~-~~~~~i~~l~~spdg-~l-~~gs~dg~I~iwd~--~~~~~--~~~l~~h---  585 (701)
                            ++..           ... +. +.....+.++++|+| .+ ++-+..+.|+.++.  .++..  ...+-|.   
T Consensus       279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~  358 (496)
T 3kya_A          279 YFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ  358 (496)
T ss_dssp             HHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB
T ss_pred             ccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC
Confidence                  4543           112 22 123446899999999 54 44456778998654  33322  1222221   


Q ss_pred             C------------CCeE-EEEEe-------cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec----------cCCCCC
Q 005342          586 Q------------NRIT-CLAYS-------LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF----------QTGLVP  635 (701)
Q Consensus       586 ~------------~~V~-~v~~s-------pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~----------~~~~~~  635 (701)
                      .            .... .++..       ++|.+.++-...++|+.++ .+|..   ..+..-          ..|...
T Consensus       359 ~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v---~TiaG~g~~~~~~~~~~~G~~d  434 (496)
T 3kya_A          359 SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV---STYAGRGASTSLADGNQWGTDD  434 (496)
T ss_dssp             CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE---EEEEESCTTHHHHHSCSCCCCC
T ss_pred             CcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE---EEEecccccccccCccccccCC
Confidence            1            1234 45554       5677777777788999999 45532   122100          001100


Q ss_pred             -------CCCCeEEEEEcCC-CCEEEEE-ecCeEEEEECCCCceeee
Q 005342          636 -------ETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAPTLNHTSQ  673 (701)
Q Consensus       636 -------~~~~v~~v~~spd-g~~l~sg-~Dg~I~iwd~~~g~~~~~  673 (701)
                             .-.....|+++++ |.+.++- ....|+.++++....++-
T Consensus       435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~  481 (496)
T 3kya_A          435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG  481 (496)
T ss_dssp             EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred             CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence                   0134678999997 6655553 677899999876655543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.36  E-value=0.0011  Score=75.34  Aligned_cols=207  Identities=9%  Similarity=-0.016  Sum_probs=115.7

Q ss_pred             CCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE
Q 005342          442 GRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  518 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~  518 (701)
                      ..+..++|++.+..|+.+.. .+.|..+++.+...                . .... ..+ .........++++  +..
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~----------------~-~~~~-~~i-~~~~~~P~glavD~~~g~  466 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG----------------V-SSYD-TVI-SRDIQAPDGLAVDWIHSN  466 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC------------------CCCC-CBC-CSCC--CCCEECCCSSSB
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCC----------------C-cceE-EEE-eCCCCCcceEEEEeeCCc
Confidence            45678899987777766554 57787776532100                0 0000 001 0111223456665  444


Q ss_pred             EEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-e-EEEEeCC-CcEEEEeCCCCceEEeecCCCCCeEEEE
Q 005342          519 LFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDD-SSILVHCPCTKKTKAKLKGHQNRITCLA  593 (701)
Q Consensus       519 l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~-l~~gs~d-g~I~iwd~~~~~~~~~l~~h~~~V~~v~  593 (701)
                      |+.+.  .+.|.++++........+.........++++|.+ . +++.... +.|+.+++............-...+.|+
T Consensus       467 LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGla  546 (699)
T 1n7d_A          467 IYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT  546 (699)
T ss_dssp             CEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEE
T ss_pred             EEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEE
Confidence            44443  6899999986554333333223455789999976 4 4443333 7888888754322222222234567899


Q ss_pred             EecCCC-EEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCce
Q 005342          594 YSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH  670 (701)
Q Consensus       594 ~spdg~-~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~  670 (701)
                      |+|++. +.++-+..+.|.++++.....   ..+.... +..   ....++++..+  .|+..  ..+.|..++..+|+.
T Consensus       547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~---~~~~~~~-~~~---~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          547 LDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDE-KRL---AHPFSLAVFED--KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             ECTTTCCEEEEETTTTEEEEECSSSSCC---EEECCCS-SSC---SSCCCCEEETT--EEEEECSTTTCEEEEETTTEEE
T ss_pred             EeccCCEEEEEecCCCeEEEEccCCCce---EEEEecC-CcC---CCceEeEEECC--EEEEEeCCCCeEEEEEccCCCc
Confidence            999755 555556678999999975431   1121011 111   22344555443  44443  577899999988888


Q ss_pred             eeeeee
Q 005342          671 TSQVLL  676 (701)
Q Consensus       671 ~~~l~~  676 (701)
                      +..+..
T Consensus       618 ~~~i~~  623 (699)
T 1n7d_A          618 VNLLAE  623 (699)
T ss_dssp             EECCCT
T ss_pred             eEEeec
Confidence            777653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.36  E-value=0.18  Score=52.99  Aligned_cols=154  Identities=8%  Similarity=-0.045  Sum_probs=101.6

Q ss_pred             CCCeEEEEec--CCEEEEEe--CCeEEEEeCCCC----cEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC
Q 005342          506 KDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT  575 (701)
Q Consensus       506 ~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~  575 (701)
                      ...+..++|+  ++.|+.+.  .+.|+.+++...    .....+.........+++++.+  ++++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            3567789998  66666665  689999998652    2223333234567899999854  666667788999999876


Q ss_pred             CceEEeecCCCCCeEEEEEecCCCEEEEEe-C-CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342          576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-A-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  653 (701)
Q Consensus       576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s-~-D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~  653 (701)
                      ......+...-.....++++|.+.+|+.+. . .+.|...++.....   ..+.  . ...   ...+.++++|++..|+
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---~~~~--~-~~l---~~P~glavd~~~~~lY  261 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLV--T-ENI---QWPNGITLDLLSGRLY  261 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---EEEE--C-SSC---SCEEEEEEETTTTEEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---EEEE--E-CCC---CceEEEEEEeCCCEEE
Confidence            554444443334578999999666555444 2 47899999876431   1111  1 111   5678999999888887


Q ss_pred             EE--ecCeEEEEECCCC
Q 005342          654 SI--HEGQIDVYEAPTL  668 (701)
Q Consensus       654 sg--~Dg~I~iwd~~~g  668 (701)
                      .+  ..+.|..+|+...
T Consensus       262 ~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          262 WVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             EEETTTTEEEEEETTSC
T ss_pred             EEECCCCEEEEEeCCCC
Confidence            75  4678999998543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.22  E-value=0.057  Score=55.45  Aligned_cols=195  Identities=11%  Similarity=0.072  Sum_probs=108.8

Q ss_pred             EEEEcCCCCeEEEEc------------CCCcEEEEeccccCCCCceeEeecC---CCCCCCCEEEEEEec--CCC-EEEE
Q 005342          397 ESTSLPDADSAVCAK------------SLEKSVNLKLQLINEPSECRTLLLP---DNSFGGRVVRLIYSH--SGD-FLVA  458 (701)
Q Consensus       397 ~l~~spdg~~l~s~s------------~d~~v~iw~~~~~~~~~~~~~l~~~---~~~~~~~v~~l~~sp--dg~-~l~s  458 (701)
                      .++..|+|..+++++            .+|.|.++|..+..  .+...+.+.   .....-....+.+.+  +|. +|++
T Consensus        54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~--~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKE--PAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             EEEECTTSEEEEEECCC-----------CCEEEEEETTSSS--CCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCC--CceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            456788887766662            68999999986321  222333321   111234667777766  454 3444


Q ss_pred             EEC---CCcEEEEecCCCCccccccccceeeEEeeCCCCeE-EeecccCCCCCCeEEEEec--CCEEEEEe---------
Q 005342          459 LTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV-MTNDIAADPKDSISCFALR--GSHLFSAS---------  523 (701)
Q Consensus       459 ~s~---dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~l~~s--~~~l~s~s---------  523 (701)
                      +..   +.++.+|++                   +..++.. ....+....-...+++++.  |.+.++..         
T Consensus       132 vnh~~~~s~ielf~~-------------------d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~  192 (355)
T 3sre_A          132 VNHPGSSSTVEVFKF-------------------QEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK  192 (355)
T ss_dssp             EECSTTCCEEEEEEE-------------------ETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred             EECCCCCCeEEEEEE-------------------ECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence            432   456777765                   4444431 1111222233467788887  55544432         


Q ss_pred             ---------CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-e-EEEEeCCCcEEEEeCCC-Cce--EEeecCCCCCe
Q 005342          524 ---------GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCPCT-KKT--KAKLKGHQNRI  589 (701)
Q Consensus       524 ---------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~-l~~gs~dg~I~iwd~~~-~~~--~~~l~~h~~~V  589 (701)
                               .|.|..+|.  ++. ..+...-...+.++|+||+ . +++-+..+.|+.|++.. ++.  .+.+. ..+..
T Consensus       193 ~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~P  268 (355)
T 3sre_A          193 SWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLV  268 (355)
T ss_dssp             HHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEE
T ss_pred             cchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCC
Confidence                     144555554  222 2222122345899999999 4 45556678999999863 332  22332 24567


Q ss_pred             EEEEEec-CCCEEEEEeCC-CeEEEEECC
Q 005342          590 TCLAYSL-SLNVLVSSGAD-AQLCVWDAV  616 (701)
Q Consensus       590 ~~v~~sp-dg~~l~s~s~D-~~I~vwd~~  616 (701)
                      -.+++.+ +|++.+++..+ +.|..|+..
T Consensus       269 DGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          269 DNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             ceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            7889999 59977766543 455555554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.22  E-value=0.022  Score=57.33  Aligned_cols=158  Identities=13%  Similarity=0.069  Sum_probs=105.3

Q ss_pred             CCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEE-ecC----CC--CCeEEEEE---cCCC-eEEEEe-------
Q 005342          506 KDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLAT-FAN----PP--PIATYFIL---LPQD-LFAFGF-------  563 (701)
Q Consensus       506 ~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---spdg-~l~~gs-------  563 (701)
                      .....+++|+  +..+..++  .++|..||...+..... +.+    ..  ..+..+.+   .|++ ++++..       
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            3445577887  56666666  79999999976644333 222    11  13578999   6889 655433       


Q ss_pred             ------CCCcEEEEeCC---CCceEEeec--CC----------C-CCeEEEEEecCCCEEEEEeCC-CeEEEEECCCCee
Q 005342          564 ------DDSSILVHCPC---TKKTKAKLK--GH----------Q-NRITCLAYSLSLNVLVSSGAD-AQLCVWDAVGWKK  620 (701)
Q Consensus       564 ------~dg~I~iwd~~---~~~~~~~l~--~h----------~-~~V~~v~~spdg~~l~s~s~D-~~I~vwd~~~g~~  620 (701)
                            .+..+..||+.   +++.+....  +.          . ...+.++..++|+.-++++.. +.|...+..... 
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence                  26789999998   776654332  11          1 248899999999988888888 888888776532 


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  667 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~  667 (701)
                      .....+. .+....  ....+.|+++|+|+.|++. .+|.+..+|+.+
T Consensus       171 ~~~~~~~-~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          171 VSTFAWE-SGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEEC-CCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             Eeeeeec-CCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            2111122 111111  1457899999999988885 588899999764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.21  E-value=0.064  Score=57.05  Aligned_cols=192  Identities=11%  Similarity=0.045  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCeEEEEcCC---Cc-EEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcEEEEe
Q 005342          395 SRESTSLPDADSAVCAKSL---EK-SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWK  469 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d---~~-v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd  469 (701)
                      ...++++|+|+++++....   .. +...+..    .+......++   .......++++| +|...++-..++.|..++
T Consensus       184 P~giavd~dG~lyVad~~~~~~~~gv~~~~~~----~~~~~~~~~~---~~~~P~giavd~~~G~lyv~d~~~~~V~~~d  256 (433)
T 4hw6_A          184 CADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA----SGFTERLSLC---NARGAKTCAVHPQNGKIYYTRYHHAMISSYD  256 (433)
T ss_dssp             EEEEEECTTCCEEEEECCSCTTSEEEEEECGG----GTTCCEEEEE---ECSSBCCCEECTTTCCEEECBTTCSEEEEEC
T ss_pred             ccEEEECCCCCEEEEcCCCCcccceEEEEECC----CCeecccccc---ccCCCCEEEEeCCCCeEEEEECCCCEEEEEE
Confidence            7789999999955554421   12 2222222    1110000010   123445678888 565444444467777774


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCC--CCcE--EEEe
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE--TFQT--LATF  541 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~--~~~~--~~~~  541 (701)
                                           +.++......+..+.......++++  |++|+.+.  .+.|+.++..  ++..  ...+
T Consensus       257 ---------------------~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~  315 (433)
T 4hw6_A          257 ---------------------PATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIV  315 (433)
T ss_dssp             ---------------------TTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEE
T ss_pred             ---------------------CCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEE
Confidence                                 4444431111111222233468998  77666665  6899998865  3321  1222


Q ss_pred             cCC---------------CCCeEEEEE---------cCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC-----------
Q 005342          542 ANP---------------PPIATYFIL---------LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-----------  585 (701)
Q Consensus       542 ~~~---------------~~~i~~l~~---------spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h-----------  585 (701)
                      .+.               -.....+++         .++| ++++-..++.|+.++. ++.. .++.|.           
T Consensus       316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG  393 (433)
T 4hw6_A          316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDG  393 (433)
T ss_dssp             EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCE
T ss_pred             EecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCC
Confidence            211               123467899         6777 6666677789999985 5643 333321           


Q ss_pred             -------CCCeEEEEEe-cCCCEEEEEeCCCeEEEEECC
Q 005342          586 -------QNRITCLAYS-LSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       586 -------~~~V~~v~~s-pdg~~l~s~s~D~~I~vwd~~  616 (701)
                             -.....++++ ++|.++++-...++|+.++++
T Consensus       394 ~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          394 ELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                   1136778888 567666666667778777653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.18  E-value=0.23  Score=50.22  Aligned_cols=193  Identities=10%  Similarity=-0.052  Sum_probs=116.1

Q ss_pred             eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCCCce--eEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEec
Q 005342          395 SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSEC--RTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~~~~--~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~  470 (701)
                      +..++|++.+ ....+-...+.|..++..    ++..  ..+..    .-.....+++.+.+..|+.+. ..+.|.+++.
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~----g~~~~~~~~~~----~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~  108 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFN----KTESVQNVVVS----GLLSPDGLACDWLGEKLYWTDSETNRIEVSNL  108 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETT----SSSCCCEEEEE----CCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEcc----CCCceEEEEcC----CCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence            5688999854 455565667888888886    2211  11111    123456788887665555554 4677888765


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe---CCeEEEEeCCCCcEEEEe-cCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATF-ANP  544 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s---dg~I~iwd~~~~~~~~~~-~~~  544 (701)
                      +..                   ....+   + .........++++  +..|+.+.   .+.|...++.. .....+ ...
T Consensus       109 dG~-------------------~~~~l---~-~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~  164 (318)
T 3sov_A          109 DGS-------------------LRKVL---F-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSE  164 (318)
T ss_dssp             TSC-------------------SCEEE---E-CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSS
T ss_pred             CCC-------------------cEEEE---E-eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECC
Confidence            221                   11111   1 1223456788887  45555544   37899998853 333333 222


Q ss_pred             CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          545 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       545 ~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      -.....++++|++  +.++-+..+.|..+|+..........+.......+++.. +.++++-...+.|..++..+|+.
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence            3456899999976  555556678999999864333222333344567788753 34555666778999999987753

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.15  E-value=0.48  Score=52.74  Aligned_cols=155  Identities=14%  Similarity=0.016  Sum_probs=88.3

Q ss_pred             eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC--CCcEEEEecC
Q 005342          395 SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQ  471 (701)
Q Consensus       395 V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~  471 (701)
                      ...+++.+.+. ..++-...+.|.+.+++    +.....+..   ..-.....+++.|.+.+|..+..  .+.|...+++
T Consensus        86 P~GlAvD~~~~~ly~~d~~~~~I~v~~~d----G~~~~~l~~---~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d  158 (619)
T 3s94_A           86 PDGLACDWLGEKLYWTDSETNRIEVSNLD----GSLRKVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  158 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEEC---SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             cCeEEEEecCCEEEEEeCCCCEEEEEECC----CCCEEEEEe---CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence            67899998655 44555667889999986    333323221   12345668899997666666553  2444444331


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCC
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPI  547 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~  547 (701)
                      .                   .....+   . ...-.....++++  ++.|+.+.  .+.|..+|+..........+....
T Consensus       159 G-------------------~~~~~l---~-~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~  215 (619)
T 3s94_A          159 G-------------------SSRFII---I-NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH  215 (619)
T ss_dssp             S-------------------CSCEEE---E-CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------
T ss_pred             C-------------------CceEEE---E-eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCC
Confidence            1                   111112   1 1223467789998  67777766  588999998643322222212222


Q ss_pred             eEEEEEcCCCeEEEEeCCCcEEEEeCCCCceE
Q 005342          548 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTK  579 (701)
Q Consensus       548 i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~  579 (701)
                      ...+++..+..+++-..++.|...|..+++..
T Consensus       216 P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          216 PFALTLFEDILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             CCCEEESSSEEEEECTTTCSEEEEESSSCCCC
T ss_pred             ceEEEEeCCEEEEecCCCCEEEEEECCCCccc
Confidence            34667765545555566778999998776543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.13  E-value=0.66  Score=55.51  Aligned_cols=256  Identities=10%  Similarity=0.027  Sum_probs=138.8

Q ss_pred             eEEEEEcCC------CCeEEEEcC-CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEe--cCCCEEEEEECCCcE
Q 005342          395 SRESTSLPD------ADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS--HSGDFLVALTQTATH  465 (701)
Q Consensus       395 V~~l~~spd------g~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~s--pdg~~l~s~s~dg~i  465 (701)
                      |.|+++.|.      ++++|.|.. |++++|+++.+   -.......++.   .....++.+.  ....+|..|-.||.+
T Consensus       556 vscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~---l~~~~~~~L~~---~~~p~si~l~~~~~~~~L~igl~dG~l  629 (1158)
T 3ei3_A          556 VACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS---FELLHKEMLGG---EIIPRSILMTTFESSHYLLCALGDGAL  629 (1158)
T ss_dssp             EEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT---CCEEEEEECCS---SCCEEEEEEEEETTEEEEEEEETTSEE
T ss_pred             eEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC---CCeEEEEECCC---CCCCcEEEEEEeCCCcEEEEEeCCCeE
Confidence            889998764      468999986 99999999973   12222212321   1233344333  234578888899998


Q ss_pred             EEEecCCC--Cc------cccccccceeeEEeeCC------------------CCeEEeecccCCCCCCeE-EEEec---
Q 005342          466 KLWKWQSN--KQ------SLEEENVNMESQLYQPS------------------SKLVMTNDIAADPKDSIS-CFALR---  515 (701)
Q Consensus       466 ~vwd~~~~--~~------~~g~~~~~~~i~~~d~~------------------~~~~~~~~~~~~~~~~v~-~l~~s---  515 (701)
                      ..+.++..  ..      ..|..  .+.+..+...                  .+.+....+   ....+. ...|+   
T Consensus       630 ~~~~~d~~tg~l~d~r~~~LG~~--pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l---~~~~v~~~~~F~se~  704 (1158)
T 3ei3_A          630 FYFGLNIETGLLSDRKKVTLGTQ--PTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV---NLKEVNYMCPLNSDG  704 (1158)
T ss_dssp             EEEEECTTTCCEEEEEEEECCSS--CCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB---SSSCCCEEEEECCSS
T ss_pred             EEEEEcCCCCccccceeEEcCCC--ceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc---ChHHhceEeccCccc
Confidence            77766432  22      11110  0111111111                  111111001   111222 22343   


Q ss_pred             -CCEEEEEeCCeEEEEeCCCCc--EEEEecCCCCCeEEEEEcCCC-eEEEEe-C--------------------------
Q 005342          516 -GSHLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LFAFGF-D--------------------------  564 (701)
Q Consensus       516 -~~~l~s~sdg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~spdg-~l~~gs-~--------------------------  564 (701)
                       .+-++..+++.+++..+.+..  .+++++ -...+..++++|+. .++++. .                          
T Consensus       705 ~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  783 (1158)
T 3ei3_A          705 YPDSLALANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSV  783 (1158)
T ss_dssp             STTEEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEE
T ss_pred             CCCcEEEEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcc
Confidence             344555556668888775432  344444 34577889999877 333322 1                          


Q ss_pred             ----------------------CCcEEEEeCCCCceEEeecC-CCCCeEEEE---EecC-CCEEEEEe----------CC
Q 005342          565 ----------------------DSSILVHCPCTKKTKAKLKG-HQNRITCLA---YSLS-LNVLVSSG----------AD  607 (701)
Q Consensus       565 ----------------------dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~---~spd-g~~l~s~s----------~D  607 (701)
                                            -+.|++.|..+.+.+..+.- ....+.+++   |..+ ..+++.|.          ..
T Consensus       784 ~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~  863 (1158)
T 3ei3_A          784 SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ  863 (1158)
T ss_dssp             CCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred             cccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence                                  02467778777776655542 222345544   3222 46888776          35


Q ss_pred             CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceee
Q 005342          608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       608 ~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~  672 (701)
                      |.|++|++..++..   .+.+...     .++|++++-- +| +|++|-...|++|++...+.++
T Consensus       864 Gri~vf~v~~~kL~---lv~~~~v-----~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~  918 (1158)
T 3ei3_A          864 GRIVVFQYSDGKLQ---TVAEKEV-----KGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR  918 (1158)
T ss_dssp             EEEEEEEEETTEEE---EEEEEEE-----SSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE
T ss_pred             eEEEEEEEECCEEE---EEEEEEc-----CCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE
Confidence            78999999855322   2221111     1778887643 34 6777777899999997665433

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.08  E-value=0.14  Score=51.10  Aligned_cols=142  Identities=12%  Similarity=0.060  Sum_probs=76.2

Q ss_pred             CCEEEEEe-C-----CeEEEEeCCCCcEE--EEecCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEe
Q 005342          516 GSHLFSAS-G-----GKISIFSLETFQTL--ATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK  581 (701)
Q Consensus       516 ~~~l~s~s-d-----g~I~iwd~~~~~~~--~~~~~~~~~i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~  581 (701)
                      +..++.|+ +     ..+.+||..+.+-.  ..+.........+.  -++ .++.|+.+     ..+.+||+.+.+....
T Consensus       113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  190 (301)
T 2vpj_A          113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV  190 (301)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred             CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence            66666665 3     36899998876533  22221111222222  256 66666654     3689999988755432


Q ss_pred             --ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          582 --LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       582 --l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                        +.........+.  -++++++.|+.+     ..+.+||+.+.+-.   .+..++...    .....+.+  ++++++.
T Consensus       191 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~---~~~~~p~~r----~~~~~~~~--~~~i~v~  259 (301)
T 2vpj_A          191 TPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT---TVTSMTTPR----CYVGATVL--RGRLYAI  259 (301)
T ss_dssp             CCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE---EECCCSSCC----BSCEEEEE--TTEEEEE
T ss_pred             CCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEE---ECCCCCCcc----cceeEEEE--CCEEEEE
Confidence              111111112222  366777777654     46999999986432   222222222    22222322  5666666


Q ss_pred             E-ec-----CeEEEEECCCCce
Q 005342          655 I-HE-----GQIDVYEAPTLNH  670 (701)
Q Consensus       655 g-~D-----g~I~iwd~~~g~~  670 (701)
                      | .+     ..+.+||+.+.+-
T Consensus       260 GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          260 AGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             CCBCSSSBEEEEEEEETTTTEE
T ss_pred             cCcCCCcccccEEEEcCCCCeE
Confidence            4 33     4588999987653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.07  E-value=0.58  Score=52.18  Aligned_cols=228  Identities=8%  Similarity=-0.002  Sum_probs=136.1

Q ss_pred             eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccce
Q 005342          406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNM  484 (701)
Q Consensus       406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~  484 (701)
                      +|+.+ ....|+..++.    +..... .++.. .-..+..++|++.+..++.+.. ++.|..+++...           
T Consensus         8 ~Ll~s-~~~~I~~i~l~----~~~~~~-~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~-----------   69 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLE----TNNNNV-AIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS-----------   69 (628)
T ss_dssp             EEEEE-ETTEEEEEESS----CTTCEE-ECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----------
T ss_pred             EEEEE-eCCcEEEEECC----CCCcce-EEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC-----------
Confidence            44444 34678888886    332222 22322 2356889999998777766654 678877755221           


Q ss_pred             eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eE
Q 005342          485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF  559 (701)
Q Consensus       485 ~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l  559 (701)
                              ..+.+   +.. .......++++  +..|+.+.  .+.|.+.++........+...-.....++++|.. .|
T Consensus        70 --------~~~~v---~~~-g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~l  137 (628)
T 4a0p_A           70 --------ALEHV---VEF-GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFM  137 (628)
T ss_dssp             --------SCEEE---ECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEE
T ss_pred             --------CcEEE---EeC-CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeE
Confidence                    11111   111 12345577777  56565555  5899999986543322232334456899999965 44


Q ss_pred             EEEe--CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCC
Q 005342          560 AFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE  636 (701)
Q Consensus       560 ~~gs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~  636 (701)
                      +...  ..+.|...++.......... .-...+.+++++++..|+.+ ...+.|...|+..+..   ..+.    ...  
T Consensus       138 Y~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~---~v~~----~~l--  207 (628)
T 4a0p_A          138 YWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR---EVIA----DDL--  207 (628)
T ss_dssp             EEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEE----ECC--
T ss_pred             EEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce---EEee----ccC--
Confidence            4433  35688888876544333233 34567899999976665544 5577999999977532   2222    111  


Q ss_pred             CCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342          637 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       637 ~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                       ....++++.. +...++- ..+.|...|..+|+....+.
T Consensus       208 -~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          208 -PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQ  245 (628)
T ss_dssp             -SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             -CCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence             3345777765 3333443 57889999988887655554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.04  E-value=0.15  Score=52.48  Aligned_cols=229  Identities=13%  Similarity=0.063  Sum_probs=115.1

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEe-ecC-CCCCCCCEEEEEEecC---CCEEEEEEC-C-----C
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL-LLP-DNSFGGRVVRLIYSHS---GDFLVALTQ-T-----A  463 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l-~~~-~~~~~~~v~~l~~spd---g~~l~s~s~-d-----g  463 (701)
                      .+.++|.|||+++++- .++.|.+++ .    . ....+ .++ ..........++++|+   +..|.++.. +     +
T Consensus        33 P~~ia~~pdG~l~V~e-~~g~I~~i~-~----g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           33 PWALAFLPDGGMLIAE-RPGRIRLFR-E----G-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             EEEEEECTTSCEEEEE-TTTEEEEEE-T----T-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             ceEEEEcCCCeEEEEe-CCCeEEEEE-C----C-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            6789999999966664 458888887 3    2 11111 121 1123457899999998   555555443 2     4


Q ss_pred             cEEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc--CCCCCCeEEEEec--CCEEEEEeC--------------C
Q 005342          464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCFALR--GSHLFSASG--------------G  525 (701)
Q Consensus       464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~l~~s--~~~l~s~sd--------------g  525 (701)
                      .|..++......                .+.+.+...+.  .........++|.  |.+.++.++              |
T Consensus       106 ~v~r~~~~~~~~----------------~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g  169 (352)
T 2ism_A          106 QVVRLRHLGERG----------------VLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGG  169 (352)
T ss_dssp             EEEEEEECSSCE----------------EEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSS
T ss_pred             EEEEEEeCCCCc----------------CceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCce
Confidence            566665532100                00011101111  1111223578888  544444322              4


Q ss_pred             eEEEEeCCCC------------cEEEEe-cCCCCCeEEEEEcC-CC-eEEEEeCCCc--------EEEEeCCCCc-----
Q 005342          526 KISIFSLETF------------QTLATF-ANPPPIATYFILLP-QD-LFAFGFDDSS--------ILVHCPCTKK-----  577 (701)
Q Consensus       526 ~I~iwd~~~~------------~~~~~~-~~~~~~i~~l~~sp-dg-~l~~gs~dg~--------I~iwd~~~~~-----  577 (701)
                      .|..+|....            .....+ .++ .....++|+| +| ++++-.....        |.+..  .+.     
T Consensus       170 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp  246 (352)
T 2ism_A          170 KILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWP  246 (352)
T ss_dssp             EEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTT
T ss_pred             EEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCC
Confidence            6666665420            000111 122 2246789999 55 4443332222        43332  221     


Q ss_pred             -------------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee-eeeeeeccCCCCCCCCCeEEE
Q 005342          578 -------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPETTIVNHI  643 (701)
Q Consensus       578 -------------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~-~~~l~~~~~~~~~~~~~v~~v  643 (701)
                                   ++..+..| .....++| .+|.++++.-..+.|...++....... ......+....    ..+..+
T Consensus       247 ~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~----~rp~~v  320 (352)
T 2ism_A          247 RVVGRGNDPRYRDPLYFWPQG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGF----GRLREV  320 (352)
T ss_dssp             TCCSCCCCTTSCCCSEECTTC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESS----CCEEEE
T ss_pred             cccCCCCCCCCcCCeEecCCC-CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccC----CCeeEE
Confidence                         22233222 34567777 577777766667788887776432100 00011121121    678999


Q ss_pred             EEcCCCCEEEEE
Q 005342          644 QFHPDQIHLLSI  655 (701)
Q Consensus       644 ~~spdg~~l~sg  655 (701)
                      ++.|||.+.++.
T Consensus       321 ~~~pdG~lyv~~  332 (352)
T 2ism_A          321 QVGPDGALYVTT  332 (352)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EECCCCcEEEEE
Confidence            999999877764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.02  E-value=0.38  Score=55.06  Aligned_cols=155  Identities=9%  Similarity=-0.029  Sum_probs=100.3

Q ss_pred             CCCeEEEEec--CCEEEEEe--CCeEEEEeCCCC----cEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC
Q 005342          506 KDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT  575 (701)
Q Consensus       506 ~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~  575 (701)
                      ...+..++++  +..|+.+.  .+.|+.+++...    .....+.........|++++.+  ++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            3456788888  56666555  688999998653    2223333234456789999877  566666778999999875


Q ss_pred             CceEEeecCCCCCeEEEEEecCCCEEEEEe-CC-CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342          576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-AD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  653 (701)
Q Consensus       576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s-~D-~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~  653 (701)
                      ......+...-.....|+++|.+.+|+.+. .. +.|.+.++.....   ..+.   ....   ...+.|++.+.+..|+
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~---~~lv---~~~l---~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLV---TENI---QWPNGITLDLLSGRLY  573 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEE---CSSC---SCEEEEEEETTTTEEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce---EEEE---eCCC---CCceEEEEecCCCeEE
Confidence            544333333344688999999765555444 33 7899999876431   1111   1221   5678999998877777


Q ss_pred             EE--ecCeEEEEECCCCc
Q 005342          654 SI--HEGQIDVYEAPTLN  669 (701)
Q Consensus       654 sg--~Dg~I~iwd~~~g~  669 (701)
                      .+  ..+.|...++....
T Consensus       574 waD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          574 WVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EEETTTTEEEEEETTSCS
T ss_pred             EEeCCCCcEEEEecCCCc
Confidence            65  46789999985443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.01  E-value=0.027  Score=59.99  Aligned_cols=148  Identities=12%  Similarity=0.076  Sum_probs=95.6

Q ss_pred             CeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC-CC----cEEEEeCCCCc
Q 005342          508 SISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS----SILVHCPCTKK  577 (701)
Q Consensus       508 ~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~-dg----~I~iwd~~~~~  577 (701)
                      ....++++   +..|+++. .+.|+.+|..++...... ........++++++| .|+++.. ++    .+..++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            34567776   35666666 588999999776544433 345567899999999 5665554 22    3444543 332


Q ss_pred             eE--EeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          578 TK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       578 ~~--~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      ..  ..+.. ......++++| +|.++++-..++.|+.++..++...   .+.....+     ...+.++|+|+|++|+.
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---~~~~~~~~-----~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---PLFTIQDS-----GWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence            22  22221 23457789999 7777777777899999999876421   12212111     44689999999996666


Q ss_pred             E--ecCeEEEEECC
Q 005342          655 I--HEGQIDVYEAP  666 (701)
Q Consensus       655 g--~Dg~I~iwd~~  666 (701)
                      .  ..+.|..++..
T Consensus       287 ~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          287 VVVNQHYILRSDYD  300 (430)
T ss_dssp             EETTTTEEEEEEEE
T ss_pred             EECCCCEEEEEeCC
Confidence            4  57789998764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.99  E-value=0.18  Score=51.94  Aligned_cols=231  Identities=8%  Similarity=-0.015  Sum_probs=118.1

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-cC-CCCCCCCEEEEEEecC---CCEEEEEEC----C---
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LP-DNSFGGRVVRLIYSHS---GDFLVALTQ----T---  462 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~~-~~~~~~~v~~l~~spd---g~~l~s~s~----d---  462 (701)
                      .+.++|.|||+++++- .++.|.+++.     .+. ..+. ++ ..........++++|+   +..|.++..    +   
T Consensus        31 P~~ia~~pdG~l~V~e-~~g~I~~~d~-----~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           31 PWSIAPLGGGRYLVTE-RPGRLVLISP-----SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             EEEEEEEETTEEEEEE-TTTEEEEECS-----SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CeEEEEcCCCeEEEEe-CCCEEEEEeC-----CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            6789999999866654 4488888863     233 2221 22 1122456899999998   445554433    2   


Q ss_pred             -CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC--------------C
Q 005342          463 -ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG--------------G  525 (701)
Q Consensus       463 -g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd--------------g  525 (701)
                       +.|..|+......   . .          .+.+.+...+..........++|.  |.+.++.++              |
T Consensus       104 ~~~v~r~~~~~~~~---~-~----------~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G  169 (354)
T 3a9g_A          104 RNRVIRGRLDGSTF---K-L----------KEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAG  169 (354)
T ss_dssp             EEEEEEEEECSSSC---C-E----------EEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSS
T ss_pred             ceEEEEEEECCCCc---C-c----------CccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCe
Confidence             4566665432100   0 0          000111000111111134567887  554444322              4


Q ss_pred             eEEEEeCCCC---------cEEEEecCCCCCeEEEEEcC-CC-eEEEEeCCC---cEEEEeCCC--------C-------
Q 005342          526 KISIFSLETF---------QTLATFANPPPIATYFILLP-QD-LFAFGFDDS---SILVHCPCT--------K-------  576 (701)
Q Consensus       526 ~I~iwd~~~~---------~~~~~~~~~~~~i~~l~~sp-dg-~l~~gs~dg---~I~iwd~~~--------~-------  576 (701)
                      .|..+|....         ..+.. .++. ....++|+| +| ++++-....   .|.+...-.        +       
T Consensus       170 ~I~ri~~dG~~p~~npf~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~  247 (354)
T 3a9g_A          170 KILRVDEEGRPPADNPFPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEF  247 (354)
T ss_dssp             EEEEECTTSCCCTTSSSTTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred             EEEEEcCCCCCCCCCCCCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCC
Confidence            5666665321         01111 1232 246899999 55 433322221   243332110        0       


Q ss_pred             -ceEEee-cCCCCCeEEEEEe-------cCCCEEEEEeCCCeEEEEECCCC-eeeeeeeeeeccCCCCCCCCCeEEEEEc
Q 005342          577 -KTKAKL-KGHQNRITCLAYS-------LSLNVLVSSGADAQLCVWDAVGW-KKLCSKFLHSFQTGLVPETTIVNHIQFH  646 (701)
Q Consensus       577 -~~~~~l-~~h~~~V~~v~~s-------pdg~~l~s~s~D~~I~vwd~~~g-~~~~~~~l~~~~~~~~~~~~~v~~v~~s  646 (701)
                       .++..+ ..| .....++|.       .+|.++++.-..+.|...++... +...   ...+..+..   ..+..+++.
T Consensus       248 ~~p~~~~~~~~-~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~---~~~~~~~~~---~rp~~v~~~  320 (354)
T 3a9g_A          248 VDPVIDTGSET-WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRK---ISTFFKNVF---GRLRDVVID  320 (354)
T ss_dssp             CCCSEECTTCC-CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEE---EEEECTTTS---CCEEEEEEC
T ss_pred             cCCEeecCCCC-cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccc---eeeeccCCC---CCeeEEEEC
Confidence             122233 222 356788883       57777777777788988888753 2211   111222222   678999999


Q ss_pred             CCCCEEEEE
Q 005342          647 PDQIHLLSI  655 (701)
Q Consensus       647 pdg~~l~sg  655 (701)
                      |||.+.++.
T Consensus       321 pDG~lyv~~  329 (354)
T 3a9g_A          321 DDGGILIST  329 (354)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCcEEEEE
Confidence            999876665

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.89  E-value=0.075  Score=53.47  Aligned_cols=152  Identities=12%  Similarity=0.087  Sum_probs=100.1

Q ss_pred             EEEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccC-----CCCCCeEEEEe---
Q 005342          444 VVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-----DPKDSISCFAL---  514 (701)
Q Consensus       444 v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~v~~l~~---  514 (701)
                      -.++.|.+....+..++ ..+.|..|+.                     ..+......+..     .....+..+.+   
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~---------------------~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~   73 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNP---------------------KTQSHFNVVIDGASSNGDGEQQMSGLSLLTH   73 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECT---------------------TTCCEEEECCTTTCCSSCCSEEEEEEEESSS
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcC---------------------CCCeEEEEecCCccccCCCcceeeEEEEecc
Confidence            34678988666677766 5899999955                     333221111211     01113567888   


Q ss_pred             c--CCEEEEEe--------------CCeEEEEeCC---CCcEEEEecC-------------CCCCeEEEEEcCCC-eEEE
Q 005342          515 R--GSHLFSAS--------------GGKISIFSLE---TFQTLATFAN-------------PPPIATYFILLPQD-LFAF  561 (701)
Q Consensus       515 s--~~~l~s~s--------------dg~I~iwd~~---~~~~~~~~~~-------------~~~~i~~l~~spdg-~l~~  561 (701)
                      .  +.++++..              +..+..||+.   +++.+....-             .......++..++| ..++
T Consensus        74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt  153 (334)
T 2p9w_A           74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA  153 (334)
T ss_dssp             SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred             CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence            4  55555332              4679999998   7876654431             11247899999999 7777


Q ss_pred             EeCC-CcEEEEeCCCCceEEeec------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          562 GFDD-SSILVHCPCTKKTKAKLK------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       562 gs~d-g~I~iwd~~~~~~~~~l~------~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      ++.. +.|..++.... .+..+.      ......+.++++|+|+.|+....++.+..+|+..
T Consensus       154 ~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          154 FALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            8888 88988886543 333221      1222467999999999888776699999999885

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.86  E-value=0.56  Score=48.74  Aligned_cols=225  Identities=11%  Similarity=0.073  Sum_probs=135.4

Q ss_pred             CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC
Q 005342          413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS  492 (701)
Q Consensus       413 d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~  492 (701)
                      +..|.|-|+.+....  .++   |.     ...+...+|..+.++.-. ..++.++|+                     +
T Consensus        47 ~~~vvIiDl~~~~~~--~rr---pi-----~AdsAIMnP~~~iiALra-g~~lQiFnl---------------------e   94 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNP--IRR---PI-----SADSAIMNPASKVIALKA-GKTLQIFNI---------------------E   94 (494)
T ss_dssp             CCEEEEEETTSTTSC--EEE---EC-----CCSEEEECSSSSCEEEEE-TTEEEEEET---------------------T
T ss_pred             CCeEEEEECCCCCcc--eec---cc-----ccceeeeCCCCcEEEEec-CCeEEEEch---------------------H
Confidence            347888888742221  111   11     122344677777555443 678888866                     4


Q ss_pred             CCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCC-cEEEEecCC----CCCeEEEEEcCCC--eEEEEe-
Q 005342          493 SKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETF-QTLATFANP----PPIATYFILLPQD--LFAFGF-  563 (701)
Q Consensus       493 ~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~-~~~~~~~~~----~~~i~~l~~spdg--~l~~gs-  563 (701)
                      +...+.. .  ....+|.-..|- .+.|+..++..|+-|++... .+.+.|..|    ...|..-..+++.  .+++|- 
T Consensus        95 ~K~klks-~--~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~  171 (494)
T 1bpo_A           95 MKSKMKA-H--TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGIS  171 (494)
T ss_dssp             TTEEEEE-E--ECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEE
T ss_pred             Hhhhhcc-e--ecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeec
Confidence            4442221 1  123467677777 88999999999999999643 466666654    4567788889998  444443 


Q ss_pred             -----CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecC---CCEEEEEeCC---CeEEEEECCCC---e-eeeeeeeee
Q 005342          564 -----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---LNVLVSSGAD---AQLCVWDAVGW---K-KLCSKFLHS  628 (701)
Q Consensus       564 -----~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spd---g~~l~s~s~D---~~I~vwd~~~g---~-~~~~~~l~~  628 (701)
                           -.|.+.+|..+. +.-+.+.||......+....+   .+.++.+...   ++++|-++...   . ....+... 
T Consensus       172 ~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd-  249 (494)
T 1bpo_A          172 AQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD-  249 (494)
T ss_dssp             EETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE-
T ss_pred             ccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee-
Confidence                 346789999754 456778888665443333211   1245545443   78999988532   1 11112222 


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeee
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l  674 (701)
                      +.........--.++..|+....+.. ..-|.|++||++||.++..-
T Consensus       250 v~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          250 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (494)
T ss_dssp             CCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence            21111101134468888988777766 68899999999999986543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.80  E-value=0.38  Score=48.01  Aligned_cols=143  Identities=12%  Similarity=0.042  Sum_probs=74.7

Q ss_pred             CCEEEEEe-C------CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEeC---------CCcEEEEeCCCCc
Q 005342          516 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD---------DSSILVHCPCTKK  577 (701)
Q Consensus       516 ~~~l~s~s-d------g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~---------dg~I~iwd~~~~~  577 (701)
                      +..++.|+ +      ..+.+||..+.+-...-..+.... .+++. -++ .++.|+.         -..+.+||..+.+
T Consensus       102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~  180 (306)
T 3ii7_A          102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET  180 (306)
T ss_dssp             TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred             CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence            66666665 4      468999998775332211111111 22222 255 5555543         3458999998875


Q ss_pred             eEEe--ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342          578 TKAK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  650 (701)
Q Consensus       578 ~~~~--l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~  650 (701)
                      ....  +......- +++. -++++++.|+.+     ..+.+||..+.+-..   +..++...    .....+.+  +++
T Consensus       181 W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r----~~~~~~~~--~~~  249 (306)
T 3ii7_A          181 WTELCPMIEARKNH-GLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM---VSPMPWKG----VTVKCAAV--GSI  249 (306)
T ss_dssp             EEEECCCSSCCBSC-EEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEE---CCCCSCCB----SCCEEEEE--TTE
T ss_pred             EEECCCccchhhcc-eEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEE---CCCCCCCc----cceeEEEE--CCE
Confidence            4332  11111111 2222 266677766643     468999999864222   22122221    22233333  566


Q ss_pred             EEEEE-ec-----CeEEEEECCCCce
Q 005342          651 HLLSI-HE-----GQIDVYEAPTLNH  670 (701)
Q Consensus       651 ~l~sg-~D-----g~I~iwd~~~g~~  670 (701)
                      +++.| .+     ..+.+||+.+.+-
T Consensus       250 i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          250 VYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             EEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             EEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence            66665 32     4689999987654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.73  E-value=0.41  Score=47.67  Aligned_cols=142  Identities=10%  Similarity=0.058  Sum_probs=74.8

Q ss_pred             CCEEEEEe-C-----CeEEEEeCCCCcEEEE--ecCCCCCeEEEEEcCCC-eEEEEeCC-------CcEEEEeCCCCceE
Q 005342          516 GSHLFSAS-G-----GKISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-------SSILVHCPCTKKTK  579 (701)
Q Consensus       516 ~~~l~s~s-d-----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~spdg-~l~~gs~d-------g~I~iwd~~~~~~~  579 (701)
                      +..++.|+ +     ..+.+||..+.+-...  +...... .+++. -++ .++.|+.+       ..+.+||+.+.+..
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            66666666 4     3688999887653322  1111111 22222 255 55555432       35899999877543


Q ss_pred             Ee--ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE
Q 005342          580 AK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  652 (701)
Q Consensus       580 ~~--l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l  652 (701)
                      ..  +.........+.  -++++++.|+.+     ..+.+||..+++-.   .+..++...    .....+.  -+++++
T Consensus       187 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~~~~~r----~~~~~~~--~~~~i~  255 (302)
T 2xn4_A          187 YIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR---QVADMNMCR----RNAGVCA--VNGLLY  255 (302)
T ss_dssp             EECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEE---EECCCSSCC----BSCEEEE--ETTEEE
T ss_pred             ECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEe---eCCCCCCcc----ccCeEEE--ECCEEE
Confidence            32  221111112222  267777777654     46999999986432   222222222    1112222  256666


Q ss_pred             EEE-ec-----CeEEEEECCCCce
Q 005342          653 LSI-HE-----GQIDVYEAPTLNH  670 (701)
Q Consensus       653 ~sg-~D-----g~I~iwd~~~g~~  670 (701)
                      +.| .+     ..+.+||+.+.+-
T Consensus       256 v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          256 VVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             EECCBCSSSBCCCEEEEETTTTEE
T ss_pred             EECCcCCCcccccEEEEcCCCCeE
Confidence            664 33     3489999987753

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.66  E-value=0.076  Score=55.10  Aligned_cols=137  Identities=13%  Similarity=0.097  Sum_probs=90.2

Q ss_pred             CCEEEEEeCCeEEEEeCCCCcEEEEecCC----CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc------------e
Q 005342          516 GSHLFSASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK------------T  578 (701)
Q Consensus       516 ~~~l~s~sdg~I~iwd~~~~~~~~~~~~~----~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~------------~  578 (701)
                      |..++.+.++.||.-++......+.+...    -..+..+..+|+| ++|..+ +..|.|..+..+.            .
T Consensus        32 ~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q  110 (452)
T 3pbp_A           32 GTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ  110 (452)
T ss_dssp             TTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred             CCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence            88888888999999998755555555433    2367889999999 777764 5688888876321            1


Q ss_pred             EEeecC------CCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC--CCCCCCCCeEEEEEcC
Q 005342          579 KAKLKG------HQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GLVPETTIVNHIQFHP  647 (701)
Q Consensus       579 ~~~l~~------h~~~V~~v~~sp---dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~--~~~~~~~~v~~v~~sp  647 (701)
                      .+.+.-      ...+|..+.|+|   .+..|++-..|++|++||+........ .+.....  +.......|.+++|++
T Consensus       111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT
T ss_pred             eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC
Confidence            122221      246799999999   456899999999999999997432211 2221100  1011115678888888


Q ss_pred             CCCEEEE
Q 005342          648 DQIHLLS  654 (701)
Q Consensus       648 dg~~l~s  654 (701)
                      ++-.|.+
T Consensus       190 ~~lTLYv  196 (452)
T 3pbp_A          190 DGLTLYC  196 (452)
T ss_dssp             TSSCEEE
T ss_pred             CCcEEEE
Confidence            7654444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.58  E-value=0.26  Score=52.84  Aligned_cols=152  Identities=9%  Similarity=0.040  Sum_probs=91.0

Q ss_pred             CCEEEEEEec-CCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCC--CCCCeEEEEe---
Q 005342          442 GRVVRLIYSH-SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFAL---  514 (701)
Q Consensus       442 ~~v~~l~~sp-dg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~v~~l~~---  514 (701)
                      .....++|+| ++..|+++.. .+.|++.                     |+.++.+... ...+  .......++|   
T Consensus       139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~I---------------------D~~~~~v~~l-~~~~~~~~~~p~~ia~~~~  196 (496)
T 3kya_A          139 SDNGRLAFDPLNKDHLYICYDGHKAIQLI---------------------DLKNRMLSSP-LNINTIPTNRIRSIAFNKK  196 (496)
T ss_dssp             CSEEEEEEETTEEEEEEEEEETEEEEEEE---------------------ETTTTEEEEE-ECCTTSSCSBEEEEEECCC
T ss_pred             CCCCEEEEccCCCCEEEEEECCCCeEEEE---------------------ECCCCEEEEE-EccCccccCCCcEEEEeec
Confidence            4577899998 4555555544 3445554                     5566664431 1111  2235789999   


Q ss_pred             ----c--CCEEEEEe-CC-------eEEEEeCCC-CcEE-----EEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEe
Q 005342          515 ----R--GSHLFSAS-GG-------KISIFSLET-FQTL-----ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHC  572 (701)
Q Consensus       515 ----s--~~~l~s~s-dg-------~I~iwd~~~-~~~~-----~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd  572 (701)
                          +  |++|+++. .+       .|.+++... +...     ..+... .....++++|++  ++++-..++.|+.+|
T Consensus       197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d  275 (496)
T 3kya_A          197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLD  275 (496)
T ss_dssp             BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred             ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence                7  77677776 32       266776443 2221     122211 233578899965  666777888999999


Q ss_pred             CC-------CCce-----------EEe-ec-CCCCCeEEEEEecCCCE-EEEEeCCCeEEEEECC
Q 005342          573 PC-------TKKT-----------KAK-LK-GHQNRITCLAYSLSLNV-LVSSGADAQLCVWDAV  616 (701)
Q Consensus       573 ~~-------~~~~-----------~~~-l~-~h~~~V~~v~~spdg~~-l~s~s~D~~I~vwd~~  616 (701)
                      +.       ++..           ... +. +.......++|+|+|++ .++-+..+.|+.++..
T Consensus       276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            87       5543           111 11 22345689999999995 4555667899996653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.51  E-value=0.023  Score=64.63  Aligned_cols=198  Identities=10%  Similarity=-0.070  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCCeEEEE-cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEecCC
Q 005342          395 SRESTSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-TQTATHKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg~~l~s~-s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~~~  472 (701)
                      +..++|++.+..|+.+ ...+.|..+++........... .+  .........+++.+.+..|+.+ ...+.|.++++  
T Consensus       408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~-~i--~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~--  482 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-VI--SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT--  482 (699)
T ss_dssp             CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC-BC--CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBS--
T ss_pred             eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE-EE--eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEec--
Confidence            5678999876666555 4557888888762100011111 00  0111234567777555444444 34577777754  


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--C-CeEEEEeCCCCcEEEEe-cCCCC
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G-GKISIFSLETFQTLATF-ANPPP  546 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--d-g~I~iwd~~~~~~~~~~-~~~~~  546 (701)
                                         ....... .+ .........++++  +.+|+.+.  . +.|.++++.. .....+ ...-.
T Consensus       483 -------------------dg~~~~~-l~-~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~  540 (699)
T 1n7d_A          483 -------------------KGVKRKT-LF-REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQ  540 (699)
T ss_dssp             -------------------SSCCEEE-EC-CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCS
T ss_pred             -------------------CCCceEE-EE-eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCC
Confidence                               2222111 01 1112334567776  44444443  3 6888888743 322222 22233


Q ss_pred             CeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          547 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       547 ~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      ....|+++|++  ++++-+..+.|..+|+........+.  +.......+++..+ .++++....+.|..+|..+|+.
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence            45789999987  55555667799999986533322222  11223445666544 4555566678999999888753

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.45  E-value=0.87  Score=45.59  Aligned_cols=146  Identities=10%  Similarity=0.054  Sum_probs=75.2

Q ss_pred             CCEEEEEe-C--------CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEeC-C-----CcEEEEeCCCCce
Q 005342          516 GSHLFSAS-G--------GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD-D-----SSILVHCPCTKKT  578 (701)
Q Consensus       516 ~~~l~s~s-d--------g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~-d-----g~I~iwd~~~~~~  578 (701)
                      +..++.|+ +        ..+.+||..+.+-...-..+.... .+++. -++ .++.|+. +     ..+.+||..+.+.
T Consensus        99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  177 (315)
T 4asc_A           99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW  177 (315)
T ss_dssp             TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred             CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence            55555555 2        468999998765322111111111 22222 355 5666655 2     3689999987754


Q ss_pred             EEe--ecCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCE
Q 005342          579 KAK--LKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH  651 (701)
Q Consensus       579 ~~~--l~~h~~~V~~v~~spdg~~l~s~s~D~-----~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~  651 (701)
                      ...  +......-..+  .-++++++.|+.++     .+.+||..+.+-.   .+..++...    .....+.+  ++++
T Consensus       178 ~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r----~~~~~~~~--~~~l  246 (315)
T 4asc_A          178 KELAPMQTARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA---PFEAFPQER----SSLSLVSL--VGTL  246 (315)
T ss_dssp             EECCCCSSCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEE---EECCCSSCC----BSCEEEEE--TTEE
T ss_pred             EECCCCCCchhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEE---ECCCCCCcc----cceeEEEE--CCEE
Confidence            332  11111111222  23677777777654     5899999886422   222222222    22222322  5566


Q ss_pred             EEEE-ec--------------CeEEEEECCCCceeee
Q 005342          652 LLSI-HE--------------GQIDVYEAPTLNHTSQ  673 (701)
Q Consensus       652 l~sg-~D--------------g~I~iwd~~~g~~~~~  673 (701)
                      ++.| .+              +.+.+||+.+.+-...
T Consensus       247 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          247 YAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             EEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            6654 32              2478899988765444

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.42  E-value=1  Score=45.94  Aligned_cols=238  Identities=14%  Similarity=0.047  Sum_probs=118.8

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-cC--CCCCCCCEEEEEEecC---CCEEEEE-E--CCCcE
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LP--DNSFGGRVVRLIYSHS---GDFLVAL-T--QTATH  465 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~~--~~~~~~~v~~l~~spd---g~~l~s~-s--~dg~i  465 (701)
                      .+.++|.|||+++++-...|.|++++..    .+....+. ++  ..........++++||   +..|... +  .++.|
T Consensus        34 P~~ia~~pdG~llVter~~G~I~~v~~~----~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSRDEATITRVDAK----TGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTT----TCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             ceEEEEcCCCcEEEEEecCCEEEEEECC----CCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            7899999999988887768999988764    33332222 21  1123567899999995   3344433 2  34455


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC--------------CeEEE
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG--------------GKISI  529 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd--------------g~I~i  529 (701)
                      .-|..........           .....+.+...+..........++|.  |.+.++.+|              |.|.-
T Consensus       110 ~R~~~~~~~~~~~-----------~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlR  178 (347)
T 3das_A          110 VRMLYDEKKPSGE-----------QLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILR  178 (347)
T ss_dssp             EEEEBCTTSCTTC-----------CBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEE
T ss_pred             EEEEeCCCCcccc-----------cCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEE
Confidence            5554432110000           00111111111211111234567887  554444322              45555


Q ss_pred             EeCCCC---------cEEEEecCCCCCeEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCc------------------eEE
Q 005342          530 FSLETF---------QTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTKK------------------TKA  580 (701)
Q Consensus       530 wd~~~~---------~~~~~~~~~~~~i~~l~~spdg-~l~~g-s~dg~I~iwd~~~~~------------------~~~  580 (701)
                      ++....         ..+.. .++. ....++|+|+| +.++- +.|+.=.|--+..+.                  ++.
T Consensus       179 i~~dG~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~  256 (347)
T 3das_A          179 MTPDGEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVA  256 (347)
T ss_dssp             ECTTSSBCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSE
T ss_pred             EeCCCCccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcE
Confidence            554321         01111 1333 34688999988 43332 233322222222221                  122


Q ss_pred             eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342          581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI  655 (701)
Q Consensus       581 ~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg  655 (701)
                      .+..+......++|. +|.+++..-..+.|....+..+.... ..-. +..+..   ..+..|+..|||.+.++.
T Consensus       257 ~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~-~~e~-~l~~~~---gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          257 QWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAA-DPQA-FLEGEY---GRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             EECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESS-CCEE-ESTTTS---SCEEEEEEEETTEEEEEE
T ss_pred             ecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceec-ceEE-eecCCC---CCccEEEECCCCcEEEEE
Confidence            222222345667775 46666655556667666666543211 1111 222332   778999999999877663

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.36  E-value=0.77  Score=45.84  Aligned_cols=142  Identities=10%  Similarity=0.030  Sum_probs=75.1

Q ss_pred             CCEEEEEe-C-----CeEEEEeCCCCcEEEE--ecCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEe
Q 005342          516 GSHLFSAS-G-----GKISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK  581 (701)
Q Consensus       516 ~~~l~s~s-d-----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~  581 (701)
                      +..++.|+ +     ..+.+||..+.+-...  +.........+.+  ++ .++.|+.+     ..+.+||+.+.+....
T Consensus       122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  199 (308)
T 1zgk_A          122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI  199 (308)
T ss_dssp             TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC
T ss_pred             CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC
Confidence            66666665 3     4688999987653221  1111111222222  56 66666554     3689999887754332


Q ss_pred             --ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          582 --LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       582 --l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                        +......-..+.+  ++++++.|+.+     ..+.+||+.+.+-..   +..++...    .....+.+  ++++++.
T Consensus       200 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~---~~~~p~~r----~~~~~~~~--~~~i~v~  268 (308)
T 1zgk_A          200 TAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF---VAPMKHRR----SALGITVH--QGRIYVL  268 (308)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE---CCCCSSCC----BSCEEEEE--TTEEEEE
T ss_pred             CCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE---CCCCCCCc----cceEEEEE--CCEEEEE
Confidence              1111111222222  66777777654     569999999864322   22122222    12222222  5666666


Q ss_pred             E-ec-----CeEEEEECCCCce
Q 005342          655 I-HE-----GQIDVYEAPTLNH  670 (701)
Q Consensus       655 g-~D-----g~I~iwd~~~g~~  670 (701)
                      | .+     ..+.+||+.+.+-
T Consensus       269 GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          269 GGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             CCBCSSCBCCEEEEEETTTTEE
T ss_pred             cCcCCCcccceEEEEcCCCCEE
Confidence            4 32     4588999987653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.25  E-value=0.37  Score=49.97  Aligned_cols=159  Identities=13%  Similarity=0.085  Sum_probs=95.0

Q ss_pred             EcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc-ccc
Q 005342          400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-SLE  478 (701)
Q Consensus       400 ~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~-~~g  478 (701)
                      ...+|..++.+-. +.||.-++..   ....+.+..+....-..|..+..+|+|++|+..+ +..|.|..+..+.. ..+
T Consensus        28 ~~~n~t~i~~a~~-n~iR~~~i~~---~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           28 SSQNGTRIVFIQD-NIIRWYNVLT---DSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             EETTTTEEEEEET-TEEEEEETTT---CSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred             EEcCCCEEEEEEC-CEEEEEECCC---CCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcc
Confidence            3456666666555 6777777763   2233444443211233577899999999877764 56888888753221 110


Q ss_pred             -ccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----CCEEEEEe-CCeEEEEeCCCCc--EEEEec-------
Q 005342          479 -EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQ--TLATFA-------  542 (701)
Q Consensus       479 -~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~~~l~s~s-dg~I~iwd~~~~~--~~~~~~-------  542 (701)
                       .....+.++.|....-+       .....+|..+-|+     |..|++-. |+.|++||+....  +. .+.       
T Consensus       103 ~~~~~~~q~~ty~l~~~~-------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg  174 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEE-------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFG  174 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC---------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEE
T ss_pred             cccccccceeEEEcCCcc-------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccC
Confidence             00122233444432110       1245789999998     66777777 9999999997522  22 222       


Q ss_pred             --CCCCCeEEEEEcCCC-eEEE--EeCCCcEEEE
Q 005342          543 --NPPPIATYFILLPQD-LFAF--GFDDSSILVH  571 (701)
Q Consensus       543 --~~~~~i~~l~~spdg-~l~~--gs~dg~I~iw  571 (701)
                        .....|.+++|++++ .+.+  .+++|.|+-.
T Consensus       175 ~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          175 LDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             CCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence              122568899999998 5544  5588998864

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.20  E-value=1.3  Score=45.24  Aligned_cols=64  Identities=13%  Similarity=0.096  Sum_probs=41.7

Q ss_pred             CCeEEEEEec-------CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe
Q 005342          587 NRITCLAYSL-------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH  656 (701)
Q Consensus       587 ~~V~~v~~sp-------dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~  656 (701)
                      ..+..++|..       +|.++++.-..+.|...++..++......   +.....   ..+..+++.|||.+.++.+
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~---~rp~~v~~~pdG~lyv~td  341 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILTDRG---QRIRDVRTGPDGYLYVLTD  341 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESGGGC---CCEEEEEECTTSCEEEEEC
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cccCCC---CceeEEEECCCCcEEEEEe
Confidence            3567778863       47777777778888888887664322222   211211   5789999999998766543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.20  E-value=2.5  Score=48.26  Aligned_cols=229  Identities=10%  Similarity=0.039  Sum_probs=133.2

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |.++.-..+|..- .|+.+| +..||-.      +..............|.++...++|. |-.|+.+| +..||.    
T Consensus        24 V~~I~qD~~G~lW-igT~~G-L~ryDG~------~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigT~~G-l~~yd~----   89 (758)
T 3ott_A           24 VSCFLQDSEGLIW-IGSNKG-LFSYDGY------STQQHFTYGENNNTRIYCGVIIDNTY-LYMGTDNG-ILVYNY----   89 (758)
T ss_dssp             EEEEEECTTSCEE-EEESSC-EEEECSS------CEEECSCTTSTTSSCEEEEEEETTTE-EEEEETTE-EEEEET----
T ss_pred             EEEEEECCCCCEE-EEECCC-ccccCCC------ceEEEEccCCCCCceEEEEEEcCCCc-EEEEeCCC-eEEEeC----
Confidence            8899888887654 445555 5556643      11111111112345788888887774 56666655 667754    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCCCCcEEEEec-----CCCCCeE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA-----NPPPIAT  549 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~~~~~~~~-----~~~~~i~  549 (701)
                                       .++..... . ......|.++...+..|..++.+.+..+|..+++.. .+.     .....|.
T Consensus        90 -----------------~~~~f~~~-~-~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~  149 (758)
T 3ott_A           90 -----------------RADRYEQP-E-TDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIY  149 (758)
T ss_dssp             -----------------TTTEECCC-S-CCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEE
T ss_pred             -----------------CCCEEECc-c-cCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEE
Confidence                             33332210 0 112235766655544566667447889998776543 331     1234688


Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEeCCCCceEEe-ecCC----CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          550 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAK-LKGH----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       550 ~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~-l~~h----~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      ++...++|.+.+|+.+ -+..+|..+++.... ....    ...|.++...+++..|..|+. +-+..+|..+++.....
T Consensus       150 ~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~  227 (758)
T 3ott_A          150 SIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTE  227 (758)
T ss_dssp             EEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEecc
Confidence            8888888844456654 578888776654321 1111    124888888877764444443 45888998876432211


Q ss_pred             eeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342          625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN  669 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~  669 (701)
                      .+.      .   ..|.++...++|.+.+.. ++.+.+++..+++
T Consensus       228 ~l~------~---~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~  262 (758)
T 3ott_A          228 AFH------N---NSIKSLALDGNGDLLAGT-DNGLYVYHNDTTP  262 (758)
T ss_dssp             EEE------E---EEEEEEEECTTCCEEEEE-TTEEEEECCTTSC
T ss_pred             CCC------C---CeEEEEEEcCCCCEEEEe-CCceeEEecCCCc
Confidence            111      1   568888888888776654 5568888876654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.12  E-value=0.96  Score=45.00  Aligned_cols=102  Identities=13%  Similarity=0.070  Sum_probs=55.6

Q ss_pred             CCEEEEEe-C---------CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCce
Q 005342          516 GSHLFSAS-G---------GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD-----SSILVHCPCTKKT  578 (701)
Q Consensus       516 ~~~l~s~s-d---------g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~  578 (701)
                      +..++.|+ +         ..+.+||..+.+-...-....... .+++.. ++ .++.|+.+     ..+.+||+.+.+.
T Consensus       150 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  228 (306)
T 3ii7_A          150 GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEW  228 (306)
T ss_dssp             TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred             CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence            66666664 2         348899998775332211111111 222222 55 66665543     3689999988754


Q ss_pred             EEe--ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCee
Q 005342          579 KAK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKK  620 (701)
Q Consensus       579 ~~~--l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~  620 (701)
                      ...  +.........+.+  ++.+++.|+.+     ..+.+||..+.+-
T Consensus       229 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          229 KMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             EECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             EECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence            332  2211112223333  67777778754     5789999988653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.08  E-value=1.1  Score=44.48  Aligned_cols=101  Identities=13%  Similarity=0.054  Sum_probs=55.9

Q ss_pred             CCEEEEEe-C-----CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEe-
Q 005342          516 GSHLFSAS-G-----GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK-  581 (701)
Q Consensus       516 ~~~l~s~s-d-----g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~-  581 (701)
                      +..++.|+ +     ..+.+||..+.+-...-....... .+++. -++ .++.|+.+     ..+.+||+.+.+.... 
T Consensus       160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  238 (301)
T 2vpj_A          160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT  238 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence            66666665 4     468999998775432211111111 12222 255 66666654     4699999988765432 


Q ss_pred             -ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCe
Q 005342          582 -LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWK  619 (701)
Q Consensus       582 -l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~  619 (701)
                       +.........+.  -++++++.|+.+     ..|.+||..+.+
T Consensus       239 ~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          239 SMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence             111111112222  367777777655     468899998864

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.07  E-value=0.69  Score=45.98  Aligned_cols=189  Identities=11%  Similarity=0.033  Sum_probs=91.8

Q ss_pred             CCCeEEEEcCC-----CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342          403 DADSAVCAKSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  477 (701)
Q Consensus       403 dg~~l~s~s~d-----~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  477 (701)
                      ++..++.|+.+     ..+.+||..    +.+...+. +..........+  .-+++.++.|+.++.-.+-         
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~----~~~W~~~~-~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~---------  124 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPV----KDQWTSVA-NMRDRRSTLGAA--VLNGLLYAVGGFDGSTGLS---------  124 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETT----TTEEEEEC-CCSSCCBSCEEE--EETTEEEEEEEECSSCEEE---------
T ss_pred             CCEEEEEeCcCCCccccceEEECCC----CCceeeCC-CCCccccceEEE--EECCEEEEEcCCCCCccCc---------
Confidence            66777777754     357788876    44433333 111111111222  2356666777654321110         


Q ss_pred             cccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEecCCEEEEEe-C-------CeEEEEeCCCCcEEEE--ecCCCC
Q 005342          478 EEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALRGSHLFSAS-G-------GKISIFSLETFQTLAT--FANPPP  546 (701)
Q Consensus       478 g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s~~~l~s~s-d-------g~I~iwd~~~~~~~~~--~~~~~~  546 (701)
                             .+..||+.+++-... .+. ........+.+.+..++.|+ +       ..+.+||..+.+-...  +.....
T Consensus       125 -------~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~  196 (302)
T 2xn4_A          125 -------SVEAYNIKSNEWFHVAPMN-TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS  196 (302)
T ss_dssp             -------EEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             -------eEEEEeCCCCeEeecCCCC-CcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc
Confidence                   122345555552211 011 11112222222366666664 2       3488999987653322  221111


Q ss_pred             CeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEe--ecCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEE
Q 005342          547 IATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK--LKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVW  613 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~--l~~h~~~V~~v~~spdg~~l~s~s~D~-----~I~vw  613 (701)
                      . .+++.. ++ .++.|+.+     ..+.+||+.+.+....  +........ ++ ..++++++.|+.++     .+.+|
T Consensus       197 ~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~~-~~~~~i~v~GG~~~~~~~~~v~~y  272 (302)
T 2xn4_A          197 G-AGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG-VC-AVNGLLYVVGGDDGSCNLASVEYY  272 (302)
T ss_dssp             S-CEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE-EE-EETTEEEEECCBCSSSBCCCEEEE
T ss_pred             c-ccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe-EE-EECCEEEEECCcCCCcccccEEEE
Confidence            1 222222 55 66666654     3699999988754332  111111111 22 23677777777553     58999


Q ss_pred             ECCCCe
Q 005342          614 DAVGWK  619 (701)
Q Consensus       614 d~~~g~  619 (701)
                      |..+.+
T Consensus       273 d~~~~~  278 (302)
T 2xn4_A          273 NPTTDK  278 (302)
T ss_dssp             ETTTTE
T ss_pred             cCCCCe
Confidence            998864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.07  E-value=2.4  Score=47.01  Aligned_cols=151  Identities=7%  Similarity=-0.076  Sum_probs=94.0

Q ss_pred             CeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEe
Q 005342          508 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK  581 (701)
Q Consensus       508 ~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~  581 (701)
                      .+..++++  ++.|+.+.  .+.|+.+++........+...-.....+++++.+  ++++-+..+.|.+.++........
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l  429 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKIL  429 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEE
Confidence            34567776  55565555  5788888876543333333233456789999755  666666778999999865432222


Q ss_pred             ecCCCCCeEEEEEecC-CCEEEEEe-CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ec
Q 005342          582 LKGHQNRITCLAYSLS-LNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE  657 (701)
Q Consensus       582 l~~h~~~V~~v~~spd-g~~l~s~s-~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~D  657 (701)
                      +...-....++++.|. |.+.++-. ..+.|...++.....   ..+-   ....   ...+.+++++++..|+.+  ..
T Consensus       430 ~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~---~~l~---~~~l---~~P~GlalD~~~~~LY~aD~~~  500 (619)
T 3s94_A          430 ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR---VVLV---NTSL---GWPNGLALDYDEGKIYWGDAKT  500 (619)
T ss_dssp             ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEEE---CSSC---SCEEEEEEETTTTEEEEEETTT
T ss_pred             EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc---EEEE---eCCC---CCCeeeEEcccCCEEEEEECCC
Confidence            2223346789999996 54444432 246787777765321   1111   1222   567899999988777776  45


Q ss_pred             CeEEEEECCC
Q 005342          658 GQIDVYEAPT  667 (701)
Q Consensus       658 g~I~iwd~~~  667 (701)
                      +.|...++..
T Consensus       501 ~~I~~~~~dG  510 (619)
T 3s94_A          501 DKIEVMNTDG  510 (619)
T ss_dssp             TEEEEEESSS
T ss_pred             CEEEEEecCC
Confidence            6788888843

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.92  E-value=1.5  Score=44.85  Aligned_cols=132  Identities=12%  Similarity=0.089  Sum_probs=80.3

Q ss_pred             CCeEEEEeCCC--CcE-EEEecCC-----CCCeEEEEEcC--CC---eEEEEeC--CCcEEEEeCCCC----ceEEeecC
Q 005342          524 GGKISIFSLET--FQT-LATFANP-----PPIATYFILLP--QD---LFAFGFD--DSSILVHCPCTK----KTKAKLKG  584 (701)
Q Consensus       524 dg~I~iwd~~~--~~~-~~~~~~~-----~~~i~~l~~sp--dg---~l~~gs~--dg~I~iwd~~~~----~~~~~l~~  584 (701)
                      +|.|.++|.++  ++. .-.+.+.     .-....+.+.+  +|   ++++...  +++|.+|++...    ..+..+.+
T Consensus        82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g  161 (355)
T 3sre_A           82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  161 (355)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence            78999999873  222 1123321     12456677655  34   4444444  457777766542    23344544


Q ss_pred             CC-CCeEEEEEecCCCEEEEEeC-----------------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc
Q 005342          585 HQ-NRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH  646 (701)
Q Consensus       585 h~-~~V~~v~~spdg~~l~s~s~-----------------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s  646 (701)
                      .. ...+.+++.++|.+.++...                 .|.|+-+|.  ++.  .....    +-    ...+.++||
T Consensus       162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~--~~~~~----~l----~~pNGia~s  229 (355)
T 3sre_A          162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV--RVVAE----GF----DFANGINIS  229 (355)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC--EEEEE----EE----SSEEEEEEC
T ss_pred             CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE--EEeec----CC----cccCcceEC
Confidence            22 36899999999998877641                 245555554  321  11122    11    456999999


Q ss_pred             CCCCEEEEE--ecCeEEEEECCC
Q 005342          647 PDQIHLLSI--HEGQIDVYEAPT  667 (701)
Q Consensus       647 pdg~~l~sg--~Dg~I~iwd~~~  667 (701)
                      ||++.++++  ..+.|..|++..
T Consensus       230 pDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          230 PDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCCEEEEEeCCCCeEEEEEECC
Confidence            999988876  478899999863

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.78  E-value=2.5  Score=44.85  Aligned_cols=62  Identities=8%  Similarity=0.161  Sum_probs=39.7

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-cCCC----CCCCCEEEEEEecC---CCEEEEEE
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LPDN----SFGGRVVRLIYSHS---GDFLVALT  460 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~~~~----~~~~~v~~l~~spd---g~~l~s~s  460 (701)
                      .+.++|.|+|+++++-...+.|.+++..    .+....+. ++..    ........++|+||   +..|..+.
T Consensus        29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~----~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           29 PHALLWGPDNQIWLTERATGKILRVNPE----SGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTT----TCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             ceEEEEcCCCcEEEEEcCCCEEEEEECC----CCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            7899999999988876655578877754    23332222 2211    13467889999996   55554443

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=95.60  E-value=0.0058  Score=47.61  Aligned_cols=61  Identities=13%  Similarity=0.324  Sum_probs=45.9

Q ss_pred             ccccccchhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh--HHHHHHHHhcCCHHHHHHHhc
Q 005342            6 MCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN--VHRFGEIVMNGEWEKAEKYLS   66 (701)
Q Consensus         6 ~~~~~~~~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~   66 (701)
                      |++....++|+-+-|++||...||.+++.+|.+|.|+..+  ...=-.-+|+=+|..|+++=.
T Consensus         3 miLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK   65 (88)
T 1uuj_A            3 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK   65 (88)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence            4444456889999999999999999999999999998874  222345567777777665433

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.57  E-value=4.4  Score=46.17  Aligned_cols=242  Identities=13%  Similarity=0.065  Sum_probs=132.4

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC--CCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN--SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~--~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  472 (701)
                      |.++...++|.+.+.. . +.+..++..    .++...+..+..  .....|.++...+++..|..|+. +-+..+|.  
T Consensus       148 i~~i~~d~~g~lWigt-~-~Gl~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~--  218 (758)
T 3ott_A          148 IYSIIRTKDNQIYVGT-Y-NGLCRYIPS----NGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFP--  218 (758)
T ss_dssp             EEEEEECTTCCEEEEE-T-TEEEEEETT----TTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEET--
T ss_pred             EEEEEEcCCCCEEEEe-C-CCHhhCccC----CCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcC--
Confidence            7888888888876644 3 347777765    443333222211  11235888888887775555554 34666643  


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecC-------C
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFAN-------P  544 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~-------~  544 (701)
                                         .+++....  .......|.++... ...|..|+++-+.++|..+++.......       .
T Consensus       219 -------------------~~~~~~~~--~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~~~~~~~~~~l~  277 (758)
T 3ott_A          219 -------------------STGQIKQT--EAFHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHIIHDSRNIQSLT  277 (758)
T ss_dssp             -------------------TTTEEEEE--EEEEEEEEEEEEECTTCCEEEEETTEEEEECCTTSCCEEECCCTTCTTSCS
T ss_pred             -------------------CCCeEEec--cCCCCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEEEcCCCCcCcCC
Confidence                               44332210  00112357777777 4555566655688899876653322110       1


Q ss_pred             CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeec-----CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342          545 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       545 ~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      ...|.++..+.+|.|.+|+..| +.++.....-......     .....|.++.-..+|.+-+ |+.+| +..++..++.
T Consensus       278 ~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~  354 (758)
T 3ott_A          278 NNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGE  354 (758)
T ss_dssp             CSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSS
T ss_pred             cCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccc
Confidence            2358888888888566666667 5554432211111111     1124688888888887554 44554 6677766542


Q ss_pred             eeeeeeeeeccC-CCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCcee
Q 005342          620 KLCSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT  671 (701)
Q Consensus       620 ~~~~~~l~~~~~-~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~  671 (701)
                      ........ ... ........|.++.-.++|++-+.. ++.+..||..+++..
T Consensus       355 ~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~  405 (758)
T 3ott_A          355 RHDAIWYR-MGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFI  405 (758)
T ss_dssp             CCCCEEEC-TTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE
T ss_pred             cceeEEec-cCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEE
Confidence            11111111 100 000011568888888888765544 678999998877643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.46  E-value=2.4  Score=42.37  Aligned_cols=147  Identities=10%  Similarity=0.073  Sum_probs=75.2

Q ss_pred             CCEEEEEe-C-------CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEeC------CCcEEEEeCCCCceE
Q 005342          516 GSHLFSAS-G-------GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD------DSSILVHCPCTKKTK  579 (701)
Q Consensus       516 ~~~l~s~s-d-------g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~------dg~I~iwd~~~~~~~  579 (701)
                      +..++.|+ +       ..+.+||..+.+-...-....... .+++. .++ .++.|+.      -..+.+||..+.+..
T Consensus       110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~  188 (318)
T 2woz_A          110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK  188 (318)
T ss_dssp             TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred             CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence            66666665 4       358899988765332211111111 12222 456 5555543      236999999887543


Q ss_pred             Ee--ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE
Q 005342          580 AK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  652 (701)
Q Consensus       580 ~~--l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l  652 (701)
                      ..  +.........+.  -++++++.|+.+     ..+.+||+.+.+-.   .+..++...    .....+.  -+++++
T Consensus       189 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r----~~~~~~~--~~~~i~  257 (318)
T 2woz_A          189 DLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE---VMTEFPQER----SSISLVS--LAGSLY  257 (318)
T ss_dssp             EECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEE---ECCCCSSCC----BSCEEEE--ETTEEE
T ss_pred             ECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEE---ECCCCCCcc----cceEEEE--ECCEEE
Confidence            32  111111112222  366777777643     35789999886422   222222222    1222222  246666


Q ss_pred             EEE-ec--------------CeEEEEECCCCceeeee
Q 005342          653 LSI-HE--------------GQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       653 ~sg-~D--------------g~I~iwd~~~g~~~~~l  674 (701)
                      +.| .+              ..+.+||+.+.+-...+
T Consensus       258 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  294 (318)
T 2woz_A          258 AIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGML  294 (318)
T ss_dssp             EECCBCCBC----CCBCCBCCCEEEEETTTTEEEEEE
T ss_pred             EECCeeccCCCCceeccceeeeEEEEeCCCCEehhhc
Confidence            664 32              35889999887655443

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=95.41  E-value=0.011  Score=46.27  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=32.5

Q ss_pred             ccccccchhHHHHHHHHHHHHhcHHHHHHHHHHhcCCch
Q 005342            6 MCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFF   44 (701)
Q Consensus         6 ~~~~~~~~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~   44 (701)
                      |.|.   ..||..||-.||.|.||..||-+|+.||++.-
T Consensus         1 msit---sdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~   36 (90)
T 2xtc_A            1 MSIT---SDEVNFLVYRYLQESGFSHSAFTFGIESHISQ   36 (90)
T ss_dssp             -CCC---HHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred             CCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence            3466   89999999999999999999999999999875

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.40  E-value=3.1  Score=43.31  Aligned_cols=220  Identities=11%  Similarity=0.060  Sum_probs=126.0

Q ss_pred             CCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEec
Q 005342          342 NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKL  421 (701)
Q Consensus       342 ~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~  421 (701)
                      ...++.|+|+++...+...             .                -...|..=.|-.+ +.|+..+. ..|+.|++
T Consensus        84 ag~~lQiFnle~K~klks~-------------~----------------~~e~VvfWkWis~-~~l~lVT~-taVyHWsi  132 (494)
T 1bpo_A           84 AGKTLQIFNIEMKSKMKAH-------------T----------------MTDDVTFWKWISL-NTVALVTD-NAVYHWSM  132 (494)
T ss_dssp             ETTEEEEEETTTTEEEEEE-------------E----------------CSSCCCEEEEEET-TEEEEECS-SEEEEEES
T ss_pred             cCCeEEEEchHHhhhhcce-------------e----------------cCCCceEEEecCC-CeEEEEcC-CeeEEecc
Confidence            3688999999888776651             1                1112334445433 24444443 57999999


Q ss_pred             cccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---C----CcEEEEecCCCCccccccccceeeEEeeCCCC
Q 005342          422 QLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---T----ATHKLWKWQSNKQSLEEENVNMESQLYQPSSK  494 (701)
Q Consensus       422 ~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---d----g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~  494 (701)
                      .....+.+.....-.  -....|..-..+++.++++..|-   +    |.+.+|..                     +.+
T Consensus       133 ~~~s~P~kvFdR~~~--L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~---------------------er~  189 (494)
T 1bpo_A          133 EGESQPVKMFDRHSS--LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV---------------------DRK  189 (494)
T ss_dssp             SSSCCCEEEEECCGG--GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES---------------------TTC
T ss_pred             cCCCCchhheecchh--cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec---------------------ccc
Confidence            642222222211111  12467888888899998775543   2    45555544                     333


Q ss_pred             eEEeecccCCCCCCeEEEEecC-----CEEEEEe----CCeEEEEeCCCC---c------EEEEecCC---CCCeEEEEE
Q 005342          495 LVMTNDIAADPKDSISCFALRG-----SHLFSAS----GGKISIFSLETF---Q------TLATFANP---PPIATYFIL  553 (701)
Q Consensus       495 ~~~~~~~~~~~~~~v~~l~~s~-----~~l~s~s----dg~I~iwd~~~~---~------~~~~~~~~---~~~i~~l~~  553 (701)
                      .-..  + .+|......+...|     ..++.+.    .+.+++.++...   .      .+..+..+   .+-..++.+
T Consensus       190 ~sQ~--i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv  266 (494)
T 1bpo_A          190 VSQP--I-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI  266 (494)
T ss_dssp             CEEE--E-CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred             ccch--h-eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence            2111  1 35543333333331     1233333    378999998532   1      11111111   333467888


Q ss_pred             cCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342          554 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  618 (701)
Q Consensus       554 spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g  618 (701)
                      |+.. .+..-+.-|.|++||+.++.++..-+-....|...+-+....=++.....|.|.--.+...
T Consensus       267 s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             cccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            8887 8888899999999999999998766655556666666555445555667777766665543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.17  E-value=2.9  Score=41.65  Aligned_cols=231  Identities=7%  Similarity=0.019  Sum_probs=124.6

Q ss_pred             EcCCCCeEEEEc--CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC------------cE
Q 005342          400 SLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA------------TH  465 (701)
Q Consensus       400 ~spdg~~l~s~s--~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg------------~i  465 (701)
                      |+++|..++...  .++.+...+.+    .....+++-      .  .+--++++|.+|+.+..+.            .-
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~d----g~~~~~l~~------~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~   88 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNID----GSNIHKLSN------D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRN   88 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETT----SCSCEEEEE------E--EEEEEEECSSEEEEEEECC------CCSSCCSE
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCC----CCCCEEccC------C--ceeeEEEcCCEEEEEECCCCcccccceeccCCC
Confidence            456777776654  24555555544    333344331      1  2345689999988876532            12


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-----CCeEEEEeCCCCcEEEE
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-----GGKISIFSLETFQTLAT  540 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-----dg~I~iwd~~~~~~~~~  540 (701)
                      .||                   ..+.+.+....  +.   ......++..+++|+-..     +..|+..++... ....
T Consensus        89 ~Iy-------------------~i~~dg~~~~~--l~---~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~  143 (302)
T 3s25_A           89 SLC-------------------RIKRNGHGSTV--LD---PDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKK  143 (302)
T ss_dssp             EEE-------------------EEETTSCCCEE--EE---CSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEE
T ss_pred             eEE-------------------EEeCCCCcceE--ee---cCCccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEE
Confidence            222                   22444443211  11   122233444477776553     357777888543 3344


Q ss_pred             ecCCCCCeEEEEEcCCC-eEEEEeC-CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC--CeEEEEECC
Q 005342          541 FANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAV  616 (701)
Q Consensus       541 ~~~~~~~i~~l~~spdg-~l~~gs~-dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D--~~I~vwd~~  616 (701)
                      +..+..    .+++|++ .|+-.+. ...|+..++..+.....+.   +... ..++|++.+|+-...+  ..|..-++.
T Consensus       144 lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld  215 (302)
T 3s25_A          144 IKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN  215 (302)
T ss_dssp             EESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSS
T ss_pred             EeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECC
Confidence            443322    4567888 5554444 6789999987665444333   2222 3466999988876543  467777777


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe---cCeEEEEECCCCceeeeeee--eeEEEEEeeEEeee
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEAPTLNHTSQVLL--ISHIMFVQIVVKFH  690 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~---Dg~I~iwd~~~g~~~~~l~~--i~~~~fs~~~~~f~  690 (701)
                      .+..   ..+.    .     ..+  ..|+|++.+|.-+.   .+.|..-++. |...+.+..  +.+++...+.+.|-
T Consensus       216 G~~~---~~Lt----~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D-G~~r~~l~~~~~~~i~i~~d~Iy~t  279 (302)
T 3s25_A          216 NPNP---VVLT----E-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKND-GTGFKELAKGEFCNINVTSQYVYFT  279 (302)
T ss_dssp             SCCC---EECS----C-----SCE--EEEEEETTEEEEEECSSSCEEEEEETT-SCCCEEEEESCEEEEEECSSEEEEE
T ss_pred             CCCe---EEEe----C-----CCc--ceEEECCCEEEEEECCCCcEEEEEECC-CCccEEeeCCccceEEEeCCEEEEE
Confidence            6542   1221    1     223  34889999887642   3567777774 443344433  54544444444443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.14  E-value=5.2  Score=44.43  Aligned_cols=156  Identities=8%  Similarity=-0.010  Sum_probs=98.3

Q ss_pred             CeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecC------CCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC
Q 005342          508 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFAN------PPPIATYFILLPQD--LFAFGFDDSSILVHCPCT  575 (701)
Q Consensus       508 ~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~------~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~  575 (701)
                      .+..++++  ++.|+.+.  .+.|+.++.........+..      ....+..+++...+  +.++.+..+.|.+.++. 
T Consensus       341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-  419 (628)
T 4a0p_A          341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-  419 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred             CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-
Confidence            45667777  56666655  57888888754332233322      23357899999986  55677778899999975 


Q ss_pred             CceEEee-cCCCCCeEEEEEec-CCCEEEEEeCCC--eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCE
Q 005342          576 KKTKAKL-KGHQNRITCLAYSL-SLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH  651 (701)
Q Consensus       576 ~~~~~~l-~~h~~~V~~v~~sp-dg~~l~s~s~D~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~  651 (701)
                      |+....+ ........++++.| .|.++.+-....  .|...++.....   ..+-   ....   ...+.+++.+++..
T Consensus       420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~---~~l~---~~~l---~~P~gla~D~~~~~  490 (628)
T 4a0p_A          420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER---EVLF---FSGL---SKPIALALDSRLGK  490 (628)
T ss_dssp             SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC---EEEE---CSSC---SCEEEEEEETTTTE
T ss_pred             CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc---EEEE---eccC---CCccEEEEeCCCCE
Confidence            4444433 23345689999999 566555543333  677777765321   1111   1111   56799999999888


Q ss_pred             EEEE--ecCeEEEEECCCCceeeee
Q 005342          652 LLSI--HEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       652 l~sg--~Dg~I~iwd~~~g~~~~~l  674 (701)
                      |+.+  ..+.|...++. |+..+++
T Consensus       491 LYw~D~~~~~I~~~~~d-G~~r~~~  514 (628)
T 4a0p_A          491 LFWADSDLRRIESSDLS-GANRIVL  514 (628)
T ss_dssp             EEEEETTTTEEEEEETT-SCSCEEE
T ss_pred             EEEEeCCCCEEEEEeCC-CCceEEE
Confidence            8776  35789999984 4444444

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.47  E-value=3.1  Score=41.25  Aligned_cols=100  Identities=13%  Similarity=0.015  Sum_probs=55.1

Q ss_pred             CCEEEEEe-C-----CeEEEEeCCCCcEEEE--ecCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEe
Q 005342          516 GSHLFSAS-G-----GKISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK  581 (701)
Q Consensus       516 ~~~l~s~s-d-----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~  581 (701)
                      +..++.|+ +     ..+.+||+.+.+-...  +.........+.+  ++ .++.|+.+     ..+.+||+.+.+....
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  246 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV  246 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence            66666665 4     4689999877653221  1111111222222  56 66666654     4699999988754432


Q ss_pred             --ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCe
Q 005342          582 --LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWK  619 (701)
Q Consensus       582 --l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~  619 (701)
                        +.........+.  -++++++.|+.+     ..+.+||..+.+
T Consensus       247 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          247 APMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence              111111112222  266777777643     468899998864

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.45  E-value=0.077  Score=53.99  Aligned_cols=152  Identities=8%  Similarity=0.019  Sum_probs=81.5

Q ss_pred             CEEEEE-e-CCeEEEEeCCCCcEEEEecCC----CCCeEE---EEE------cCCCeEEEEeCCCcEEEEeCCCCceEEe
Q 005342          517 SHLFSA-S-GGKISIFSLETFQTLATFANP----PPIATY---FIL------LPQDLFAFGFDDSSILVHCPCTKKTKAK  581 (701)
Q Consensus       517 ~~l~s~-s-dg~I~iwd~~~~~~~~~~~~~----~~~i~~---l~~------spdg~l~~gs~dg~I~iwd~~~~~~~~~  581 (701)
                      ..++.. + ||.+..+|..+|.....+...    .+++..   ..+      +.++.+++|+.+|.++..|+++|+.+.+
T Consensus        57 ~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~  136 (339)
T 2be1_A           57 ETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA  136 (339)
T ss_dssp             EEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred             cEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            344443 4 899999999888655544311    122221   001      1233889999999999999999999988


Q ss_pred             ecCCC--CCe-----EEEEEe-----cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe-EEEEEcCC
Q 005342          582 LKGHQ--NRI-----TCLAYS-----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHPD  648 (701)
Q Consensus       582 l~~h~--~~V-----~~v~~s-----pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v-~~v~~spd  648 (701)
                      +....  +.+     .|....     -.+..++.+..+..+.+.+ ++|+ .....+........  ...+ .+-..+.|
T Consensus       137 ~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~--~~~~~~~~~~s~D  212 (339)
T 2be1_A          137 FGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL--DVPLALQNTFSKD  212 (339)
T ss_dssp             ESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT--THHHHTTCSSCSS
T ss_pred             EecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccc--ccccccccccccC
Confidence            86321  110     111110     1234666677777777766 4453 22111111110000  0000 00011245


Q ss_pred             CCEEEEEecCeEEEEECCCCceee
Q 005342          649 QIHLLSIHEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       649 g~~l~sg~Dg~I~iwd~~~g~~~~  672 (701)
                      +.+++++.||.|.-+|..+|+.+-
T Consensus       213 g~~~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          213 GMCIAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             SCCEEEETTTEEEEECSTTCCEEE
T ss_pred             CcEEEECCCCEEEEEECCCCcEEE
Confidence            677666688888888888888664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.34  E-value=5.2  Score=40.77  Aligned_cols=60  Identities=10%  Similarity=0.039  Sum_probs=39.8

Q ss_pred             CCeEEEEEc-------CCC-eEEEEeCCCcEEEEeCCCC-ceE--Eee-cCCCCCeEEEEEecCCCEEEEEe
Q 005342          546 PIATYFILL-------PQD-LFAFGFDDSSILVHCPCTK-KTK--AKL-KGHQNRITCLAYSLSLNVLVSSG  605 (701)
Q Consensus       546 ~~i~~l~~s-------pdg-~l~~gs~dg~I~iwd~~~~-~~~--~~l-~~h~~~V~~v~~spdg~~l~s~s  605 (701)
                      .....+++.       .+| ++++....+.|...++... +..  ..+ .+-...+..+++.|||.+.++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            356778883       567 6666667778988888753 332  223 23345789999999998666553

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.33  E-value=4.6  Score=40.13  Aligned_cols=137  Identities=9%  Similarity=0.026  Sum_probs=80.9

Q ss_pred             EEEEecCCEEEEEe--C-------------CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe----CCCcEE
Q 005342          510 SCFALRGSHLFSAS--G-------------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----DDSSIL  569 (701)
Q Consensus       510 ~~l~~s~~~l~s~s--d-------------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs----~dg~I~  569 (701)
                      ..+...|++|+.+.  +             ..|+..++..++.. .+..  ..  ...+++++ .|+-..    .+..|+
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--DP--CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--SC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--CC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence            33433377777665  2             36788888665432 2321  11  23677888 666554    344777


Q ss_pred             EEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342          570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       570 iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd  648 (701)
                      ..++.... ...+..+..    .+++|+++.|+-.+. ..+|++-++..+...   .+.   .+      ... ..++|+
T Consensus       133 ~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~---~l~---~~------~~~-~~~~P~  194 (302)
T 3s25_A          133 RIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA---LFY---DC------NCY-KPVVLD  194 (302)
T ss_dssp             EEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE---EEE---CS------CEE-EEEEEE
T ss_pred             EEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE---EEe---CC------Ccc-ceeeec
Confidence            77876443 344443432    456888998886665 678999998876522   221   12      222 235699


Q ss_pred             CCEEEEE--ec-CeEEEEECCCCc
Q 005342          649 QIHLLSI--HE-GQIDVYEAPTLN  669 (701)
Q Consensus       649 g~~l~sg--~D-g~I~iwd~~~g~  669 (701)
                      +.+|+-.  .+ ..|..-++..+.
T Consensus       195 g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          195 DTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             TTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             CCEEEEEEcCCCcEEEEEECCCCC
Confidence            9988864  22 367777776554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.32  E-value=0.93  Score=46.43  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=62.0

Q ss_pred             CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCce--EEeec---CCCCCeEEEEEecC---CCEEE-EEeCC-----CeEE
Q 005342          546 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKT--KAKLK---GHQNRITCLAYSLS---LNVLV-SSGAD-----AQLC  611 (701)
Q Consensus       546 ~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~--~~~l~---~h~~~V~~v~~spd---g~~l~-s~s~D-----~~I~  611 (701)
                      .....++|.|+|.++++..+|.|++++  +++.  +..+.   ........++|+|+   +..|+ +-+..     +.|.
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            356799999999333445669999998  4432  22221   12346889999998   44444 33332     6788


Q ss_pred             EEECCCCeeeeeee-eeecc--CCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          612 VWDAVGWKKLCSKF-LHSFQ--TGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       612 vwd~~~g~~~~~~~-l~~~~--~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      .|+...+.....+. +..++  .+..   .....++|.|||.+.++
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~---h~~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGL---HSGGRIAFGPDGMLYVT  151 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCC---CCCCCEEECTTSCEEEE
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCC---cCCceEEECCCCCEEEE
Confidence            88887543211122 22233  1111   23368999999977666

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.27  E-value=12  Score=44.69  Aligned_cols=205  Identities=11%  Similarity=0.035  Sum_probs=104.1

Q ss_pred             eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC------CCEEEEEEC-CCcEEEEecCCCCcccc
Q 005342          406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQ-TATHKLWKWQSNKQSLE  478 (701)
Q Consensus       406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd------g~~l~s~s~-dg~i~vwd~~~~~~~~g  478 (701)
                      .++.++ ++.+.++.++    .++.....-  ..-...|.|+++.|.      ++++++|.. |++++|+++..      
T Consensus       525 ~vvva~-g~~l~~fel~----~~~L~~~~~--~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~------  591 (1158)
T 3ei3_A          525 QVVVAV-GRALYYLQIH----PQELRQISH--TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS------  591 (1158)
T ss_dssp             EEEEEE-TTEEEEEEEE----TTEEEEEEE--EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT------
T ss_pred             EEEEEE-CCEEEEEEee----CCceeeecc--cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC------
Confidence            455554 4677777775    233222110  012467999999864      368899986 99999997732      


Q ss_pred             ccccceeeEEeeCCCCeEEe-ecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEE--eCCCCcEEE---EecCCCCC
Q 005342          479 EENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR----GSHLFSAS-GGKISIF--SLETFQTLA---TFANPPPI  547 (701)
Q Consensus       479 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iw--d~~~~~~~~---~~~~~~~~  547 (701)
                                     -+.+. ..+.  ......++.+.    ..+|..|- ||.+..+  |..+|....   .+-| ..+
T Consensus       592 ---------------l~~~~~~~L~--~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~p  653 (1158)
T 3ei3_A          592 ---------------FELLHKEMLG--GEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQP  653 (1158)
T ss_dssp             ---------------CCEEEEEECC--SSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSC
T ss_pred             ---------------CCeEEEEECC--CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCc
Confidence                           11111 1111  11234444444    33566666 8887544  444554332   2333 345


Q ss_pred             eEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE-EeecCCCCCe-EEEEEecC--CCEEEEEeCCCeEEEEECCCCeee
Q 005342          548 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRI-TCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       548 i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~-~~l~~h~~~V-~~v~~spd--g~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      +.-..+...|  .+++.+ +....+|.-+ ++.. ..+.  -..+ ....|+..  ..-++..+ ++.++|..+..-...
T Consensus       654 v~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~--~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~  728 (1158)
T 3ei3_A          654 TVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVN--LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKL  728 (1158)
T ss_dssp             CEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBS--SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSE
T ss_pred             eEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccC--hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCe
Confidence            5444454445  333333 3444444423 3322 1121  1123 33355442  23344333 456999888653322


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                         .+++++-+     ..+..++++|+.+.++.
T Consensus       729 ---~~~~ipL~-----~Tprri~y~~~~~~~~v  753 (1158)
T 3ei3_A          729 ---HIRTVPLY-----ESPRKICYQEVSQCFGV  753 (1158)
T ss_dssp             ---EEEEEECS-----SEEEEEEEEGGGTEEEE
T ss_pred             ---eEEEEeCC-----CCceEEEEcCCCCEEEE
Confidence               23323333     56789999998776554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.12  E-value=3.3  Score=41.20  Aligned_cols=100  Identities=9%  Similarity=0.052  Sum_probs=53.2

Q ss_pred             CCEEEEEe-C------CeEEEEeCCCCcEEE--EecCCCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEE
Q 005342          516 GSHLFSAS-G------GKISIFSLETFQTLA--TFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKA  580 (701)
Q Consensus       516 ~~~l~s~s-d------g~I~iwd~~~~~~~~--~~~~~~~~i~~l~~spdg-~l~~gs~dg-----~I~iwd~~~~~~~~  580 (701)
                      +..++.|+ +      ..+.+||..+.+-..  .+...... .+++.. ++ .++.|+.++     .+.+||+.+.+...
T Consensus       149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL-FGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc-eEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            66666665 2      468999998765322  11111111 222222 55 666665544     58899998875433


Q ss_pred             ee--cCCCCCeEEEEEecCCCEEEEEeCC--------------CeEEEEECCCCe
Q 005342          581 KL--KGHQNRITCLAYSLSLNVLVSSGAD--------------AQLCVWDAVGWK  619 (701)
Q Consensus       581 ~l--~~h~~~V~~v~~spdg~~l~s~s~D--------------~~I~vwd~~~g~  619 (701)
                      .-  .........+.  -++++++.|+.+              ..+.+||+.+.+
T Consensus       227 ~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          227 FEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             CCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            21  11111112222  366777777653              247788888754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.81  E-value=5.8  Score=39.40  Aligned_cols=100  Identities=11%  Similarity=0.076  Sum_probs=52.3

Q ss_pred             CCEEEEEe-C------CeEEEEeCCCCcEEEE--ecCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEE
Q 005342          516 GSHLFSAS-G------GKISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKA  580 (701)
Q Consensus       516 ~~~l~s~s-d------g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~  580 (701)
                      +..++.|+ +      ..+.+||..+.+-...  +...... .+++.. ++ .++.|+.+     ..+.+||+.+.+...
T Consensus       159 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  236 (318)
T 2woz_A          159 GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEV  236 (318)
T ss_dssp             TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred             CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence            66666664 2      3589999987753322  1111111 222332 45 55555543     257889988775433


Q ss_pred             e--ecCCCCCeEEEEEecCCCEEEEEeCC--------------CeEEEEECCCCe
Q 005342          581 K--LKGHQNRITCLAYSLSLNVLVSSGAD--------------AQLCVWDAVGWK  619 (701)
Q Consensus       581 ~--l~~h~~~V~~v~~spdg~~l~s~s~D--------------~~I~vwd~~~g~  619 (701)
                      .  +.........+  ..++++++.|+.+              ..+.+||+.+.+
T Consensus       237 ~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          237 MTEFPQERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             CCCCSSCCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             CCCCCCcccceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            2  21111111222  2356777766643              357888888754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.80  E-value=3.8  Score=43.42  Aligned_cols=100  Identities=12%  Similarity=0.058  Sum_probs=57.7

Q ss_pred             CCeEEEEec--CCEEEEEeC-CeEEEEeCCCCcE--EEEecC------CCCCeEEEEEcCC----C-eEEEEeC------
Q 005342          507 DSISCFALR--GSHLFSASG-GKISIFSLETFQT--LATFAN------PPPIATYFILLPQ----D-LFAFGFD------  564 (701)
Q Consensus       507 ~~v~~l~~s--~~~l~s~sd-g~I~iwd~~~~~~--~~~~~~------~~~~i~~l~~spd----g-~l~~gs~------  564 (701)
                      .....++|.  |+++++-.. +.|++++..+++.  +..+..      .......|+++|+    + +.++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            356789998  665555555 5799998765543  223321      2345679999995    4 3333322      


Q ss_pred             ------CCcEEEEeCCCC-------ceE-EeecC-CCCCeEEEEEecCCCEEEEEeC
Q 005342          565 ------DSSILVHCPCTK-------KTK-AKLKG-HQNRITCLAYSLSLNVLVSSGA  606 (701)
Q Consensus       565 ------dg~I~iwd~~~~-------~~~-~~l~~-h~~~V~~v~~spdg~~l~s~s~  606 (701)
                            ...|.-++...+       +.+ ..+.. .......++|.|||.+.++.++
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  235666654321       111 11221 1124689999999997776553

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.67  E-value=0.65  Score=43.64  Aligned_cols=145  Identities=12%  Similarity=0.019  Sum_probs=80.8

Q ss_pred             CCeEEEEec--CCEEEEEeCCeEEEEeCCCCcE------EEEecC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC
Q 005342          507 DSISCFALR--GSHLFSASGGKISIFSLETFQT------LATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK  576 (701)
Q Consensus       507 ~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~------~~~~~~-~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~  576 (701)
                      ..+.+++|+  |.+.++ .+|.++-.+..+...      -..+-. --....++.|+|+| +.++  .||.|+-++..+.
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence            367789999  554444 888888877655221      111110 01114789999999 5555  5699998886442


Q ss_pred             ce-------EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee-eeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342          577 KT-------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       577 ~~-------~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~-~~~l~~~~~~~~~~~~~v~~v~~spd  648 (701)
                      ..       ...-.+--..+..+.|.|+|.+-+..  |+.++-+...++.... ...-..+-.+..   ..-+.+.|.|+
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~---~~yr~l~f~~~  192 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW---DTFKFLFFSSV  192 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG---GGEEEEEECTT
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc---ceEEEEEECCC
Confidence            11       11111111467999999999866655  7776554444221000 000000110111   34455779999


Q ss_pred             CCEEEEEecCeE
Q 005342          649 QIHLLSIHEGQI  660 (701)
Q Consensus       649 g~~l~sg~Dg~I  660 (701)
                      |.+.++. ++.+
T Consensus       193 G~l~~v~-~g~~  203 (236)
T 1tl2_A          193 GTLFGVQ-GGKF  203 (236)
T ss_dssp             SCEEEEE-TTEE
T ss_pred             CcEEEEe-CCeE
Confidence            9888777 7744

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.48  E-value=1.8  Score=51.80  Aligned_cols=221  Identities=10%  Similarity=0.061  Sum_probs=125.5

Q ss_pred             CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCC
Q 005342          414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS  493 (701)
Q Consensus       414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~  493 (701)
                      .+|.|.|+.+...   ..+       .+-..-+...+|..+.++. -...++.|+|+++.                    
T Consensus        48 ~~vvIidl~~~~~---~~r-------rpi~AdsAIMnP~~~iiAL-rag~~lQiFnl~~k--------------------   96 (1630)
T 1xi4_A           48 AQVVIIDMNDPSN---PIR-------RPISADSAIMNPASKVIAL-KAGKTLQIFNIEMK--------------------   96 (1630)
T ss_pred             ceEEEEECCCCCC---ccc-------ccccchhhccCCCcceEEE-ecCCeEEEeehHHh--------------------
Confidence            4788888874221   111       1112223345677664443 34678899977432                    


Q ss_pred             CeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCC-cEEEEecCC----CCCeEEEEEcCCC--eEEEEe--
Q 005342          494 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETF-QTLATFANP----PPIATYFILLPQD--LFAFGF--  563 (701)
Q Consensus       494 ~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~-~~~~~~~~~----~~~i~~l~~spdg--~l~~gs--  563 (701)
                       ..+.. .  ....+|.-..|- .+.|+..++..|+-|++... .+++.|..|    ...|..-..+++.  .+++|-  
T Consensus        97 -~klks-~--~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~  172 (1630)
T 1xi4_A           97 -SKMKA-H--TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA  172 (1630)
T ss_pred             -hhhcc-c--ccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeecc
Confidence             21111 0  123467677777 88888888999999999642 344444433    4567778888888  444443  


Q ss_pred             ----CCCcEEEEeCCCCceEEeecCCCCCeEEEEEe--c-CCCEEEEEeC---CCeEEEEECCCC---ee-eeeeeeee-
Q 005342          564 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYS--L-SLNVLVSSGA---DAQLCVWDAVGW---KK-LCSKFLHS-  628 (701)
Q Consensus       564 ----~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s--p-dg~~l~s~s~---D~~I~vwd~~~g---~~-~~~~~l~~-  628 (701)
                          -.|.+.+|..+.+ .-+.+.||.+....+...  + ..+.++.+..   .++++|-++...   .. ...+...- 
T Consensus       173 ~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~  251 (1630)
T 1xi4_A          173 QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF  251 (1630)
T ss_pred             CCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccccc
Confidence                4478899987543 456677776654443332  1 1223333322   368888888542   11 11111110 


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceee
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~  672 (701)
                      ++....  ..-..++..|+....+.. ..-|.|+++|+.||.++-
T Consensus       252 ~~~~~~--~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          252 FPPEAQ--NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             CCcccc--cCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence            111110  122356777877666555 688999999999998754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.10  E-value=0.26  Score=46.35  Aligned_cols=110  Identities=15%  Similarity=0.172  Sum_probs=69.6

Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce------EEee-c-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT------KAKL-K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~------~~~l-~-~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~  616 (701)
                      ..+..++|+|+| +.++  .+|.++-.+..+...      -..+ . +... ..++.|.|+|.+.++  .||.|+-++..
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            367799999998 5555  778888888755221      1111 0 1112 578899999987776  55999988875


Q ss_pred             CCeeeeeeeee---eccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342          617 GWKKLCSKFLH---SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP  666 (701)
Q Consensus       617 ~g~~~~~~~l~---~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~  666 (701)
                      +....  ..+.   .+-.+.-   ..+..|.|.|+|.+.++. |+.++-+...
T Consensus       116 ~~~~~--~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P  162 (236)
T 1tl2_A          116 QSDTD--NWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPP  162 (236)
T ss_dssp             CSTTC--CHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCC
T ss_pred             cCCCC--ceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCC
Confidence            42110  1110   0111111   467999999999998888 8886544443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.37  E-value=4.2  Score=41.26  Aligned_cols=54  Identities=15%  Similarity=0.044  Sum_probs=28.1

Q ss_pred             cEEEEeCCCCceE--EeecCCCCCeEEEEEecCCCEEEEEeCCC------eEEEEECCCCeeee
Q 005342          567 SILVHCPCTKKTK--AKLKGHQNRITCLAYSLSLNVLVSSGADA------QLCVWDAVGWKKLC  622 (701)
Q Consensus       567 ~I~iwd~~~~~~~--~~l~~h~~~V~~v~~spdg~~l~s~s~D~------~I~vwd~~~g~~~~  622 (701)
                      .+.+||+.+.+..  ..+......-.  +...++++++.|+.++      .|.++++++++...
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence            5789998876533  22322222212  2334777778787543      46667888875443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.15  E-value=5.4  Score=39.14  Aligned_cols=233  Identities=12%  Similarity=0.023  Sum_probs=119.8

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |..++-.... .++. . ||.|..|-.+.   .+++-.   |.. ....|..++...+.  .++.. ||.+..|-...  
T Consensus        26 i~~ia~G~~h-~~~l-~-~G~v~~wG~n~---~Gqlg~---p~~-~~~~i~~ia~G~~h--s~~l~-~G~v~~wG~n~--   90 (282)
T 3qhy_B           26 VDAIAGGYFH-GLAL-K-GGKVLGWGANL---NGQLTM---PAA-TQSGVDAIAAGNYH--SLALK-DGEVIAWGGNE--   90 (282)
T ss_dssp             CCEEEECSSE-EEEE-E-TTEEEEEECCS---SSTTSC---CGG-GGSCCCEEEECSSE--EEEEE-TTEEEEEECCT--
T ss_pred             CcEEEeCCCe-EEEE-E-CCEEEEEeCCC---CCCCCC---Ccc-CCCCEEEEEeCCCE--EEEEE-CCEEEEeeCCC--
Confidence            5555554432 2333 4 79999998764   222211   111 12356666655433  23334 89999885321  


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFIL  553 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~  553 (701)
                                        .+++-   ++..-...|..++.. ...++.. +|.|+.|-....-.+..-......|..++.
T Consensus        91 ------------------~Gqlg---~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~  148 (282)
T 3qhy_B           91 ------------------DGQTT---VPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDG  148 (282)
T ss_dssp             ------------------TSTTC---CCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE
T ss_pred             ------------------CCCCC---CCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEc
Confidence                              11110   000112467777777 5566666 999999976542211111112345777776


Q ss_pred             cCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCC
Q 005342          554 LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  633 (701)
Q Consensus       554 spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~  633 (701)
                      ..+..++. . ||.|+.|-......+..-..-...|..++-..+.. ++.  .||.|+.|-....-... .+..     .
T Consensus       149 G~~~~~~l-~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-~p~~-----~  217 (282)
T 3qhy_B          149 GVYTALAV-K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-VPTE-----A  217 (282)
T ss_dssp             CSSEEEEE-E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-CCGG-----G
T ss_pred             ccCEEEEE-E-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-CCcc-----c
Confidence            65542222 3 79999997654221111111134577776654333 333  59999999876531111 0111     1


Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeeeeeEE
Q 005342          634 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHI  680 (701)
Q Consensus       634 ~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~i~~~  680 (701)
                      .   ..|..|+...+...++ . ||.++.|-......+....+|.++
T Consensus       218 ~---~~v~~i~~G~~h~~al-~-~g~v~~wG~n~~gq~~v~~~v~~i  259 (282)
T 3qhy_B          218 L---SGVSAIASGEWYSLAL-K-NGKVIAWGSSRTAPSSVQSGVSSI  259 (282)
T ss_dssp             G---SSCCEEEECSSCEEEE-E-TTEEEEESTTCCCCGGGSSCEEEE
T ss_pred             C---CCceEEEcCCCEEEEE-E-CCEEEEecCCCCccccCCCCcEEE
Confidence            1   4567777665444433 4 999999977554333332234433

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.98  E-value=11  Score=37.90  Aligned_cols=140  Identities=10%  Similarity=-0.104  Sum_probs=65.3

Q ss_pred             CeEEEEeCCCCcEE--EEecCCCCCeEEEEEcCCC-eEEEEeC------CCcEEEEeC--CCCceEE--eecCCCCCeEE
Q 005342          525 GKISIFSLETFQTL--ATFANPPPIATYFILLPQD-LFAFGFD------DSSILVHCP--CTKKTKA--KLKGHQNRITC  591 (701)
Q Consensus       525 g~I~iwd~~~~~~~--~~~~~~~~~i~~l~~spdg-~l~~gs~------dg~I~iwd~--~~~~~~~--~l~~h~~~V~~  591 (701)
                      ..+.+||..+.+-.  ..+......-.+++.. ++ +++.|+.      ...+..||+  .+.+...  .+.........
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            47999999876533  2222111111233333 45 5555543      346788887  4443322  12111111111


Q ss_pred             EEEecCCCEEEEEeCC----------------------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342          592 LAYSLSLNVLVSSGAD----------------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ  649 (701)
Q Consensus       592 v~~spdg~~l~s~s~D----------------------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg  649 (701)
                      .+...++++++.|+.+                      ..+.+||+.+.+-.   .+..++...    ....++  ..++
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r----~~~~~~--~~~~  317 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD---KSGELSQGR----AYGVSL--PWNN  317 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE---EEEECSSCC----BSSEEE--EETT
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee---eCCCCCCCc----ccceeE--EeCC
Confidence            1223466777777632                      25789999875422   222233222    222222  2366


Q ss_pred             CEEEEE-ec--C----eEEEEECCCCceeeee
Q 005342          650 IHLLSI-HE--G----QIDVYEAPTLNHTSQV  674 (701)
Q Consensus       650 ~~l~sg-~D--g----~I~iwd~~~g~~~~~l  674 (701)
                      ++++.| .+  +    .+.++++++++.+...
T Consensus       318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          318 SLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            776664 32  2    3666788888765543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.74  E-value=9.1  Score=46.04  Aligned_cols=195  Identities=9%  Similarity=0.107  Sum_probs=102.1

Q ss_pred             EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342          398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  477 (701)
Q Consensus       398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  477 (701)
                      .-.+|..+.+|.-. ..++.|+|++.   ..+.....+     ...|.-=.|-.+.. |+. =.+..|.-|++.+...+ 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~---k~klks~~~-----~e~VvfWkWis~~~-l~l-VT~~aVyHW~~~~~s~P-  138 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEM---KSKMKAHTM-----TDDVTFWKWISLNT-VAL-VTDNAVYHWSMEGESQP-  138 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHH---hhhhccccc-----CCCceEEEecCCCe-eEE-EcCCeEEEeccCCCCcc-
Confidence            44678877777765 58899999973   112222222     34566556654433 222 22456899988542211 


Q ss_pred             cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEE-------e-CCeEEEEeCCCCcEEEEecCCCCC
Q 005342          478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-------S-GGKISIFSLETFQTLATFANPPPI  547 (701)
Q Consensus       478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~-------s-dg~I~iwd~~~~~~~~~~~~~~~~  547 (701)
                              .+++|....      +   ....|-....+  .++++..       . .|.+.+|..+.+ ..+.+.||...
T Consensus       139 --------~k~fdR~~~------L---~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~  200 (1630)
T 1xi4_A          139 --------VKMFDRHSS------L---AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAAS  200 (1630)
T ss_pred             --------HHHHhcchh------c---ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhh
Confidence                    111111000      0   01223333333  4443322       2 378899998544 44556666544


Q ss_pred             eEEEEEcC--CC--eEEEEeC---CCcEEEEeCCCC---ce------EEeecC---CCCCeEEEEEecCCCEEEEEeCCC
Q 005342          548 ATYFILLP--QD--LFAFGFD---DSSILVHCPCTK---KT------KAKLKG---HQNRITCLAYSLSLNVLVSSGADA  608 (701)
Q Consensus       548 i~~l~~sp--dg--~l~~gs~---dg~I~iwd~~~~---~~------~~~l~~---h~~~V~~v~~spdg~~l~s~s~D~  608 (701)
                      ...+....  ..  .++.+..   .++++|.++...   ..      +..+..   -.....++..|+.-..+...+.-|
T Consensus       201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G  280 (1630)
T 1xi4_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG  280 (1630)
T ss_pred             hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCc
Confidence            43333321  11  2332222   268899887542   11      111111   123345667777666777788899


Q ss_pred             eEEEEECCCCeeee
Q 005342          609 QLCVWDAVGWKKLC  622 (701)
Q Consensus       609 ~I~vwd~~~g~~~~  622 (701)
                      .|+++|+.+|..+.
T Consensus       281 ~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          281 YIHLYDLETGTCIY  294 (1630)
T ss_pred             eEEEEecccchhhh
Confidence            99999999986544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.46  E-value=11  Score=42.23  Aligned_cols=190  Identities=9%  Similarity=0.054  Sum_probs=97.6

Q ss_pred             CCCCeEEEEcCC----CcEEEEeccccCCCCceeEeecC-----CCCCCCCEEEEEEec-CCCEEEEEECCC------cE
Q 005342          402 PDADSAVCAKSL----EKSVNLKLQLINEPSECRTLLLP-----DNSFGGRVVRLIYSH-SGDFLVALTQTA------TH  465 (701)
Q Consensus       402 pdg~~l~s~s~d----~~v~iw~~~~~~~~~~~~~l~~~-----~~~~~~~v~~l~~sp-dg~~l~s~s~dg------~i  465 (701)
                      .++..++.|+.+    ..+.++|..    ++....+..+     ....... .+++..+ +++.++.||.++      .+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~----~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv  470 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIH----YDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDN  470 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEEC----SSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECC----CCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccE
Confidence            566777777753    457788876    4444443311     1111111 2223333 666666766532      23


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEec-CCEEEEEe-C--CeEEEEeCCCCcEEEE
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR-GSHLFSAS-G--GKISIFSLETFQTLAT  540 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s-~~~l~s~s-d--g~I~iwd~~~~~~~~~  540 (701)
                      .+|                     |+.++.-... .+ ......-.++.+. +..++.|+ +  +.+.+||..+..-...
T Consensus       471 ~~y---------------------d~~t~~W~~~~~~-p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~  528 (695)
T 2zwa_A          471 WIF---------------------DMKTREWSMIKSL-SHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV  528 (695)
T ss_dssp             EEE---------------------ETTTTEEEECCCC-SBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred             EEE---------------------eCCCCcEEECCCC-CCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence            344                     5555442210 01 1112223334444 77777776 4  3799999987653221


Q ss_pred             -----ecCCCCCeEEEEEcCC-C-eEEEEeC--C-----CcEEEEeCCCCce-----EEeecC----CCCCeEEEEEecC
Q 005342          541 -----FANPPPIATYFILLPQ-D-LFAFGFD--D-----SSILVHCPCTKKT-----KAKLKG----HQNRITCLAYSLS  597 (701)
Q Consensus       541 -----~~~~~~~i~~l~~spd-g-~l~~gs~--d-----g~I~iwd~~~~~~-----~~~l~~----h~~~V~~v~~spd  597 (701)
                           .........++.+..+ + .++.|+.  +     ..+.+||+.+...     -..+..    ..... +++...+
T Consensus       529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~  607 (695)
T 2zwa_A          529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITP  607 (695)
T ss_dssp             CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEET
T ss_pred             cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCC
Confidence                 1111222344666665 6 6666665  2     3689999988761     111111    11112 2233334


Q ss_pred             CCEEEEEeC--------CCeEEEEECCCCe
Q 005342          598 LNVLVSSGA--------DAQLCVWDAVGWK  619 (701)
Q Consensus       598 g~~l~s~s~--------D~~I~vwd~~~g~  619 (701)
                      +++++.|+.        ...|.+||..++.
T Consensus       608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          608 RKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             TEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             CEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            777777764        3569999999864

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.83  E-value=4.5  Score=41.24  Aligned_cols=141  Identities=10%  Similarity=0.064  Sum_probs=75.2

Q ss_pred             CeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec-------CCCCCeEEEEEcCC----C-eEEEEeC-------C
Q 005342          508 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYFILLPQ----D-LFAFGFD-------D  565 (701)
Q Consensus       508 ~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~-------~~~~~i~~l~~spd----g-~l~~gs~-------d  565 (701)
                      ....+++.  |+.++++. .|.|++++.. +.....+.       ........++++|+    + +.++-+.       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            46788888  66255555 8999999853 33221111       12345689999996    4 3333222       2


Q ss_pred             CcEEEEeCCCC--c--eE----Eeec---CCCCCeEEEEEecCCCEEEEEeC-------------CCeEEEEECCCCeee
Q 005342          566 SSILVHCPCTK--K--TK----AKLK---GHQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKL  621 (701)
Q Consensus       566 g~I~iwd~~~~--~--~~----~~l~---~h~~~V~~v~~spdg~~l~s~s~-------------D~~I~vwd~~~g~~~  621 (701)
                      ..|..|+....  .  ..    ..+.   ........++|.|||.+.++.++             .|+|.-.+.... .-
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~-~p  176 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE-IP  176 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-CC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-CC
Confidence            35766766432  1  11    1121   10112367999999976665543             246777776532 00


Q ss_pred             eee--------eeeeccCCCCCCCCCeEEEEEcC-CCCEEEE
Q 005342          622 CSK--------FLHSFQTGLVPETTIVNHIQFHP-DQIHLLS  654 (701)
Q Consensus       622 ~~~--------~l~~~~~~~~~~~~~v~~v~~sp-dg~~l~s  654 (701)
                      ...        ....+..++    .....++|+| +|++.++
T Consensus       177 ~~npf~~~~~~~~~i~a~G~----rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGI----RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECC----SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCcCCCCCCccEEEEcC----cCccceEEECCCCCEEEE
Confidence            000        001011233    4468999999 6666665

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.06  E-value=0.56  Score=47.57  Aligned_cols=113  Identities=6%  Similarity=-0.040  Sum_probs=69.7

Q ss_pred             eEEEEeCCCcEEEEeCCCCceEEeecCC-CCCeEEEEEe--c-CCCEEEEE-eCCCeEEEEECCCCeeeeeeeeeeccCC
Q 005342          558 LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYS--L-SLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTG  632 (701)
Q Consensus       558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~v~~s--p-dg~~l~s~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~  632 (701)
                      .+++++.||.|+-+|..+|+..-++... ..++....-.  + ++..++.. +.||.++.++..+|.......+..+. .
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv-~   90 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV-S   90 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH-T
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce-e
Confidence            7899999999999999999988877643 1222221100  1 22333333 68999999999998543322222111 1


Q ss_pred             CCCCCCCeEE---EEE------cCCCCEEEE-EecCeEEEEECCCCceeeeeee
Q 005342          633 LVPETTIVNH---IQF------HPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       633 ~~~~~~~v~~---v~~------spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      .    .++..   ...      +.+| .+++ +.+|.+.-.|+.+|+.+.++..
T Consensus        91 ~----SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 T----SPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             T----CSEEEECC----------CCE-EEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             c----cccccCCCceeecccccccCC-EEEEEecCCEEEEEECCCCcEEEEEec
Confidence            0    22221   001      1333 4555 5899999999999999888765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=83.10  E-value=26  Score=34.09  Aligned_cols=181  Identities=9%  Similarity=0.021  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |..++-..+.. ++. . ||.|..|-.+..   +++-.   |.. -...|..++...+  ..++.. ||.+..|-...  
T Consensus        65 i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~---Gqlg~---P~~-~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~--  129 (282)
T 3qhy_B           65 VDAIAAGNYHS-LAL-K-DGEVIAWGGNED---GQTTV---PAE-ARSGVDAIAAGAW--ASYALK-DGKVIAWGDDS--  129 (282)
T ss_dssp             CCEEEECSSEE-EEE-E-TTEEEEEECCTT---STTCC---CGG-GSSSEEEEEEETT--EEEEEE-TTEEEEEECCT--
T ss_pred             EEEEEeCCCEE-EEE-E-CCEEEEeeCCCC---CCCCC---Ccc-cCCCeEEEECcCC--EEEEEe-CCeEEEecCCC--
Confidence            44555544432 333 3 788988887642   22211   111 1346777776644  344555 99999995422  


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFIL  553 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~  553 (701)
                                        .+++-   +.......|..++.. ...++.. ||.++.|-......+..-......|..++.
T Consensus       130 ------------------~gqlg---~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~  187 (282)
T 3qhy_B          130 ------------------DGQTT---VPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAG  187 (282)
T ss_dssp             ------------------TSTTS---CCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE
T ss_pred             ------------------CCcCC---CCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEe
Confidence                              11110   001122356666665 3334433 899999976542221111111346777777


Q ss_pred             cCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          554 LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       554 spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      ..+..++.  .||.|+.|-....-.+..-......|..++-..+...++  . ||.|+.|-...
T Consensus       188 G~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al--~-~g~v~~wG~n~  246 (282)
T 3qhy_B          188 GIFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL--K-NGKVIAWGSSR  246 (282)
T ss_dssp             CSSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE--E-TTEEEEESTTC
T ss_pred             cCCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEE--E-CCEEEEecCCC
Confidence            66553344  599999997654211111011123577776654433333  3 99999998765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=83.04  E-value=42  Score=33.85  Aligned_cols=58  Identities=10%  Similarity=0.080  Sum_probs=36.6

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce----EEeecCCCCCeEEEEEecCCCEEEEEe
Q 005342          547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVSSG  605 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~v~~spdg~~l~s~s  605 (701)
                      ....++|. +| .+......+.|....+.....    ...+.+..+.+..|+..|||.+.++.+
T Consensus       264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            44566666 35 555556666777666654432    233445456899999999998666543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=81.73  E-value=21  Score=39.96  Aligned_cols=149  Identities=11%  Similarity=0.094  Sum_probs=80.3

Q ss_pred             CCEEEEEe-C----CeEEEEeCCCCcEEEEe-c-----CCCC-CeEEEEEcC-CC-eEEEEeCCC------cEEEEeCCC
Q 005342          516 GSHLFSAS-G----GKISIFSLETFQTLATF-A-----NPPP-IATYFILLP-QD-LFAFGFDDS------SILVHCPCT  575 (701)
Q Consensus       516 ~~~l~s~s-d----g~I~iwd~~~~~~~~~~-~-----~~~~-~i~~l~~sp-dg-~l~~gs~dg------~I~iwd~~~  575 (701)
                      +..++.|+ +    ..+.+||..+++-...- .     .... .-.+++..+ ++ .++.|+.++      .+.+||..+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            55666665 3    46889998877543322 1     1111 113333343 67 666666443      588999988


Q ss_pred             CceEEe--ecCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-CC
Q 005342          576 KKTKAK--LKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QI  650 (701)
Q Consensus       576 ~~~~~~--l~~h~~~V~~v~~spdg~~l~s~s~D~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-g~  650 (701)
                      .+....  +...... .+++.-.++.+++.|+.++  .+.+||..++.-.........+...    ....++.+..+ ++
T Consensus       478 ~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~~~~  552 (695)
T 2zwa_A          478 REWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPVSKQ  552 (695)
T ss_dssp             TEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETTTTE
T ss_pred             CcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCCCCE
Confidence            654332  1111111 1223324788888887654  7999999986422211100011111    22234555655 56


Q ss_pred             EEEEE-e--c-----CeEEEEECCCCc
Q 005342          651 HLLSI-H--E-----GQIDVYEAPTLN  669 (701)
Q Consensus       651 ~l~sg-~--D-----g~I~iwd~~~g~  669 (701)
                      +++.| .  +     +.+.+||+.+.+
T Consensus       553 iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          553 GIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            66664 3  2     358899998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	701
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 33/221 (14%), Positives = 69/221 (31%), Gaps = 17/221 (7%)

Query: 449 YSHSGDFLVALTQTATHKLWKWQSNKQ--SLEEENVNMESQLYQPSSKLVMT--NDIAAD 504
              +GD +V+ ++  T K+W+ Q+     +       +          L+ +  ND    
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168

Query: 505 PKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFD 564
                +                +   S     + ++ +      T     P      G  
Sbjct: 169 VWVVATKECK---AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624
           D +I +    T      L GH N +  + +      ++S   D  L VWD    + + + 
Sbjct: 226 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285

Query: 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664
             H            V  + FH    ++++   +  + V+E
Sbjct: 286 NAH---------EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 575 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628
               K  L GH++ +T + +    +V+VS+  DA + VWD        +   H+
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 511 CFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLP----QDLFAFGFDDS 566
           CF   G+   + S                   +   I      +       L   G+DD 
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292

Query: 567 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614
           +  V           L GH NR++CL  +     + +   D+ L +W+
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 21/141 (14%), Positives = 51/141 (36%), Gaps = 15/141 (10%)

Query: 546 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 605
            + +  +     LF  G  D+S  +        +    GH++ I  + +  + N   +  
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245

Query: 606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE-GQIDVYE 664
            DA   ++D    ++L +    +   G       +  + F      LL+ ++    +V++
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICG-------ITSVSFSKSGRLLLAGYDDFNCNVWD 298

Query: 665 APTLN-------HTSQVLLIS 678
           A   +       H ++V  + 
Sbjct: 299 ALKADRAGVLAGHDNRVSCLG 319

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 12/131 (9%)

Query: 527 ISIFSLETFQTLATFANPPPIATYFILLP-QDLFAFGFDDSSILV--HCPCTKKTKAKLK 583
             ++ +       TF             P  + FA G DD++  +       +       
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 584 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 643
                IT +++S S  +L++   D    VWDA+   +            L      V+ +
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV---------LAGHDNRVSCL 318

Query: 644 QFHPDQIHLLS 654
               D + + +
Sbjct: 319 GVTDDGMAVAT 329

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 636
           +T+  L+GH  +I  + +     +LVS+  D +L +WD+    K+ +  L S        
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW------ 99

Query: 637 TTIVNHIQFHPDQIHLLSIHE 657
              V    + P   ++     
Sbjct: 100 ---VMTCAYAPSGNYVACGGL 117

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 25/138 (18%)

Query: 506 KDSISC--FALRGSHLFSASG-GKISIFSLETFQTLATFANPPPIATYFILLPQ------ 556
           KDS+    F   G  + S S    + +++L+     +    P         +        
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 557 -------DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL------NVLVS 603
                  +    G  D  +L     +      L+GH+N +  +A +         NV  +
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 604 SGADAQLCVWDAVGWKKL 621
              D +  +W    +KK+
Sbjct: 374 GSGDCKARIWK---YKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 24/172 (13%), Positives = 54/172 (31%), Gaps = 24/172 (13%)

Query: 504 DPKDSISCFALRGSHLFSASG-GKISIFSLETFQTLATFANPPPIAT------YFILLPQ 556
           D   +++     G ++ + S    + ++  ET   +    +     T      Y ++  +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264

Query: 557 D--LFAFGFDDSSILVH------------CPCTKKTKAKLKGHQNRITCLAYSLSLNVLV 602
           D      G  D S+ +              P +   +    GH++ +  +A + +   ++
Sbjct: 265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 324

Query: 603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654
           S   D  +  WD      L     H      V    + N     P+     +
Sbjct: 325 SGSKDRGVLFWDKKSGNPLLMLQGH---RNSVISVAVANGSSLGPEYNVFAT 373

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 16/142 (11%), Positives = 38/142 (26%), Gaps = 8/142 (5%)

Query: 557 DLFAFGFDDSSILVHCPCTKKTK--AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614
              A   ++  + ++     K     +LK H  ++T + ++   N +V+ G D    VW 
Sbjct: 20  TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79

Query: 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQV 674
             G     +  +                     ++   +      I +      N     
Sbjct: 80  LKGRTWKPTLVILRIN------RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 133

Query: 675 LLISHIMFVQIVVKFHSFKFFY 696
             I   +   ++          
Sbjct: 134 KHIKKPIRSTVLSLDWHPNSVL 155

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 11/104 (10%), Positives = 29/104 (27%), Gaps = 6/104 (5%)

Query: 516 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC 574
            S + +       +F+ ++     +F     +              F   D         
Sbjct: 255 SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS- 313

Query: 575 TKKTKAKLKGHQNRITCLAYS----LSLNVLVSSGADAQLCVWD 614
                     H+N ++ ++         +   ++G D  + +WD
Sbjct: 314 AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 644
               I+C A++     +     + ++ +++  G K +    L             V  + 
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ-------VTGVD 58

Query: 645 FHPDQIHLLS 654
           + PD   +++
Sbjct: 59  WAPDSNRIVT 68

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 8e-06
 Identities = 24/120 (20%), Positives = 35/120 (29%), Gaps = 13/120 (10%)

Query: 505 PKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGF 563
            K  I+C   R   + S S    I ++ +E    L        +              G 
Sbjct: 177 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGA 235

Query: 564 DDSSILV---------HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614
            D  I V           P        L  H  R+  L +      +VSS  D  + +WD
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 3/126 (2%)

Query: 525 GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 584
             I +++  T + + T  N        +     L   G  D++I +           L+G
Sbjct: 158 RTIKVWNTSTCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG 216

Query: 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 644
           H+  + C         +VS   D ++ VWD V      +         LV  +  V  +Q
Sbjct: 217 HEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 274

Query: 645 FHPDQI 650
           F   QI
Sbjct: 275 FDEFQI 280

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 3e-05
 Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 8/117 (6%)

Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 641
             GH   IT L+ S     L S+ A+  +  WD              F        T++ 
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS-----NRVFPDV---HATMIT 59

Query: 642 HIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHIMFVQIVVKFHSFKFFYVA 698
            I+            +  + V  A      S   + + +    + +   +     VA
Sbjct: 60  GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 116

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 7e-05
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 559 FAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616
            A G  D++I ++         K L  H++ +  L +    + LVSSGADA +  W+ V
Sbjct: 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 18/115 (15%)

Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 641
           + GH   IT L  +     L+S   D ++  W +               +     + ++ 
Sbjct: 9   ISGHNKGITALTVN----PLISGSYDGRIMEWSS--------------SSMHQDHSNLIV 50

Query: 642 HIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHIMFVQIVVKFHSFKFFY 696
            +     Q +     +  + V         SQ  + S        V  +      
Sbjct: 51  SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 105

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 15/189 (7%), Positives = 47/189 (24%), Gaps = 2/189 (1%)

Query: 434 LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 493
                    ++  L ++  G  L  L +       +  +  +    ++   E+       
Sbjct: 127 RRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL 186

Query: 494 KLVMTNDIAADPKDSISCFALRGSHLFSASG-GKISIFSLETFQTLATFANPPPIATYFI 552
            +   ++ +                    +    +    LET +          +  +  
Sbjct: 187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST 246

Query: 553 LLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 612
            +           + +         +  ++    +    +  S   + +   GA   L  
Sbjct: 247 AVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAA 305

Query: 613 WDAVGWKKL 621
           +DA   +K 
Sbjct: 306 YDAETLEKK 314

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 557 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614
             F     D+ +         +  +     + +     S+    +V+   D +  V++
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 11/81 (13%)

Query: 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 644
           H++ +  L ++      VS+G D  L  W       +              E++ V    
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ----------SKESSSVLSCD 313

Query: 645 FHPDQIHLLSI-HEGQIDVYE 664
              D  ++++   + +  VYE
Sbjct: 314 ISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 7/109 (6%)

Query: 546 PIATYFILLPQDLFAFGF-DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS 604
           P  ++ +     +    F  D+ I    P   +    L  H   +  +  S      V +
Sbjct: 11  PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNP-TRHVYT 68

Query: 605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653
           G    + VWD                         +   +  PD   L+
Sbjct: 69  GGKGCVKVWDISHPGNKSPVSQLDCLN----RDNYIRSCKLLPDGCTLI 113

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 582 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 641
            +  ++ I+ +    S ++L+ +  D  L V+     +      L S +         + 
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK-FDIQAKNVDLLQSLRY-----KHPLL 60

Query: 642 HIQFHPDQIHLL 653
              F  +    +
Sbjct: 61  CCNFIDNTDLQI 72

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 10/77 (12%)

Query: 575 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 634
             K+   LKGH + +         N +VS   D  L VW AV  K L +   H       
Sbjct: 5   ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH------- 56

Query: 635 PETTIVNHIQFHPDQIH 651
             T  V   Q   + I 
Sbjct: 57  --TGGVWSSQMRDNIII 71

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 12/123 (9%)

Query: 504 DPKDSISCFALRGSHLFSA-SGGKISIFSLETFQTLATFANPPP--IATYFILLPQDLFA 560
             +   S   L+ + L S  +   + I+ ++T Q L T   P     A   +   ++   
Sbjct: 215 GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 274

Query: 561 FGFDDSSILVHCPCTKKTKAKLK-----GHQNRITCLAYSLSLNVLVSSGAD----AQLC 611
              DD ++ +    T +    L      G    +  +  S +  V      +     +L 
Sbjct: 275 TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334

Query: 612 VWD 614
           V D
Sbjct: 335 VLD 337

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 10/143 (6%)

Query: 557 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616
           +    G DD  I V+    KK   +L GH   +  L Y+    +LVS   D  + VWD  
Sbjct: 24  NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK 82

Query: 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL 676
                     H+           ++ +++   +  +    +  + V++ P     S V  
Sbjct: 83  KGCCTHVFEGHNST------VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK---ESSVPD 133

Query: 677 ISHIMFVQIVVKFHSFKFFYVAV 699
                   +V        ++V V
Sbjct: 134 HGEEHDYPLVFHTPEENPYFVGV 156

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 555 PQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---NVLVSSGADAQLC 611
               FA    D++I V    T K   K    + ++      +       ++S   D  L 
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 612 VWD 614
            ++
Sbjct: 322 FYE 324

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	701
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.75
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.48
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.43
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.27
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.11
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.09
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.04
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.01
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.98
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.97
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.96
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.76
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.74
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.71
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.66
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.59
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.53
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.53
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.36
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.33
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.27
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.26
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.19
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.66
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.57
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.54
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.47
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.41
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.32
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.28
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.15
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.13
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.11
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	96.06
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.84
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.77
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.59
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.52
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.42
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.41
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.41
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.99
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.83
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.6
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.27
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.03
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.02
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.82
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.77
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.48
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.15
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	89.08
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.07
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	85.35
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	83.53
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	80.7
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	80.54

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-36  Score=312.89  Aligned_cols=283  Identities=13%  Similarity=0.162  Sum_probs=234.6

Q ss_pred             ccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342          316 KSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF  389 (701)
Q Consensus       316 ~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l  389 (701)
                      ..+.++++ .|...|.  |++|+|+      +.|++|+|||+.++.....+                        .....
T Consensus        41 ~~~~~~~~-~H~~~V~--~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~------------------------~~~~~   93 (337)
T d1gxra_          41 HARQINTL-NHGEVVC--AVTISNPTRHVYTGGKGCVKVWDISHPGNKSPV------------------------SQLDC   93 (337)
T ss_dssp             EEEEEEEE-CCSSCCC--EEEECSSSSEEEEECBSEEEEEETTSTTCCSCS------------------------EEEEC
T ss_pred             CceEEEEC-CCCCcEE--EEEECCCCCEEEEEECCEEEEEEccCCccccee------------------------EEeee
Confidence            34566666 7999999  9999999      56899999999877654431                        01113


Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      .+|.. |.+++|+|||++|++|+.|+.|++||+...  ..++..   ....|...+.+++|+|++.++++++.|+.+.+|
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~--~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~  168 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP--TPRIKA---ELTSSAPACYALAISPDSKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----EEEE---EEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeeccccccccccccc--cccccc---ccccccccccccccccccccccccccccccccc
Confidence            47888 999999999999999999999999998621  111111   223578899999999999999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP  545 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~  545 (701)
                      ++                     .++++...  ...|...|.+++|+  +..+++++ |+.+++||+++++.+..+. +.
T Consensus       169 ~~---------------------~~~~~~~~--~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~  224 (337)
T d1gxra_         169 DL---------------------HNQTLVRQ--FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FT  224 (337)
T ss_dssp             ET---------------------TTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred             cc---------------------cccccccc--ccccccccccccccccccccccccccccccccccccceeecccc-cc
Confidence            65                     45554432  24688899999998  88999998 9999999999999888876 78


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  624 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~  624 (701)
                      ..|.+++|+|++ .+++|+.|+.|++||+++++... ..+|...|++++|+|++++|++|+.||.|++||+.+++.+.  
T Consensus       225 ~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~--  301 (337)
T d1gxra_         225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--  301 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--
T ss_pred             cceEEEEEcccccccceecccccccccccccccccc-ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEE--
Confidence            899999999999 99999999999999999887764 45699999999999999999999999999999999986442  


Q ss_pred             eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      .+     +|.   ..|++++|+|++++|++| .||+|+|||+
T Consensus       302 ~~-----~~~---~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         302 QS-----KES---SSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EE-----ECS---SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             Ec-----cCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            11     233   889999999999999996 7999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-34  Score=294.62  Aligned_cols=283  Identities=15%  Similarity=0.172  Sum_probs=243.1

Q ss_pred             ccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCC
Q 005342          311 FPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDS  383 (701)
Q Consensus       311 iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~  383 (701)
                      .|... ....+.|++|.+.|.  +++|+|+       +.|++|+|||+.+++.+..+                       
T Consensus         2 ~w~p~-~~~~~~L~GH~~~I~--~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-----------------------   55 (317)
T d1vyhc1           2 EWIPR-PPEKYALSGHRSPVT--RVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-----------------------   55 (317)
T ss_dssp             CCCCC-SSCSCEEECCSSCEE--EEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-----------------------
T ss_pred             ccCCC-CCccEEEcCCCCCeE--EEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-----------------------
Confidence            45332 334567899999999  9999998       88999999999998877662                       


Q ss_pred             CCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC
Q 005342          384 NDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT  462 (701)
Q Consensus       384 ~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d  462 (701)
                            .+|.. |.+++|+|++.++++++.++.+..|+..    ......   ....|...+.++.|+|+++.+++++.|
T Consensus        56 ------~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d  122 (317)
T d1vyhc1          56 ------KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ----GFECIR---TMHGHDHNVSSVSIMPNGDHIVSASRD  122 (317)
T ss_dssp             ------CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT----SSCEEE---CCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ------eCCCCcEEEEeeeccccccccccccccccccccc----cccccc---ccccccccceeeeccCCCceEEeeccC
Confidence                  46777 9999999999999999999999999987    443333   344688999999999999999999999


Q ss_pred             CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342          463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA  539 (701)
Q Consensus       463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~  539 (701)
                      +.+++||+                     .++..... + .+|...+.+++++  +.++++++ |+.|++|++.+++...
T Consensus       123 ~~~~~~~~---------------------~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~  179 (317)
T d1vyhc1         123 KTIKMWEV---------------------QTGYCVKT-F-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA  179 (317)
T ss_dssp             SEEEEEET---------------------TTCCEEEE-E-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cceeEeec---------------------ccceeeeE-E-ccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeE
Confidence            99999965                     44443332 2 3688899999999  88999999 9999999999999999


Q ss_pred             EecCCCCCeEEEEEcCCC---------------------eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC
Q 005342          540 TFANPPPIATYFILLPQD---------------------LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL  598 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg---------------------~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg  598 (701)
                      .+.++...+.+++++|++                     .+++|+.|+.|++||+++++.+.++.+|...|.+++|+|++
T Consensus       180 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  259 (317)
T d1vyhc1         180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG  259 (317)
T ss_dssp             EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred             EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCC
Confidence            999999999999988753                     48899999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       599 ~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                      ++|++|+.||.|++||+.+++.+  ..+.    +|.   ..|++++|+|++++|++| .||+|+|||
T Consensus       260 ~~l~s~~~dg~i~iwd~~~~~~~--~~~~----~h~---~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         260 KFILSCADDKTLRVWDYKNKRCM--KTLN----AHE---HFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEETTTEEEEECCTTSCCC--EEEE----CCS---SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCeEEEEECCCCcEE--EEEc----CCC---CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999997533  2333    565   899999999999999996 899999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-33  Score=290.65  Aligned_cols=267  Identities=13%  Similarity=0.199  Sum_probs=213.6

Q ss_pred             EEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCe
Q 005342          334 CINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADS  406 (701)
Q Consensus       334 ~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~  406 (701)
                      +++++|+      +.++.+.+||+.++.....                             +.+|.. |.+++|+|+|++
T Consensus        22 ~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~-----------------------------~~~H~~~v~~~~~sp~g~~   72 (311)
T d1nr0a1          22 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEI-----------------------------YTEHSHQTTVAKTSPSGYY   72 (311)
T ss_dssp             CCEECTTSSEEEEEETTEEEEEETTCSSCCEE-----------------------------ECCCSSCEEEEEECTTSSE
T ss_pred             EEEEcCCCCEEEEEeCCEEEEEECCCCceeEE-----------------------------EcCCCCCEEEEEEeCCCCe
Confidence            7788887      5677899999987765554                             347777 999999999999


Q ss_pred             EEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccc
Q 005342          407 AVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVN  483 (701)
Q Consensus       407 l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~  483 (701)
                      ||+|+.||+|++|++..    +.. ...  ....|...|.+++|+|+++++++++.  ++.+++|+++            
T Consensus        73 latg~~dg~i~iwd~~~----~~~~~~~--~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~------------  134 (311)
T d1nr0a1          73 CASGDVHGNVRIWDTTQ----TTHILKT--TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD------------  134 (311)
T ss_dssp             EEEEETTSEEEEEESSS----TTCCEEE--EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT------------
T ss_pred             EeccccCceEeeeeeec----ccccccc--ccccccCccccccccccccccccccccccccccccccc------------
Confidence            99999999999999973    322 221  22357889999999999999999986  4668899763            


Q ss_pred             eeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-e
Q 005342          484 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L  558 (701)
Q Consensus       484 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~  558 (701)
                               +++.... + .+|...|.+++|+  ++ .+++|+ ||.|++||+++++....+.+|..+|++++++|++ +
T Consensus       135 ---------~~~~~~~-l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~  203 (311)
T d1nr0a1         135 ---------TGTSNGN-L-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL  203 (311)
T ss_dssp             ---------TCCBCBC-C-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             ---------ccccccc-c-cccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccc
Confidence                     3333221 2 4788899999998  55 477888 8999999999999999999999999999999999 9


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEeec-------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC
Q 005342          559 FAFGFDDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT  631 (701)
Q Consensus       559 l~~gs~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~  631 (701)
                      +++|+.|+.|++||..++..+..+.       +|.+.|++++|+|++++|++|+.||+|+|||+++++..  ..+.   .
T Consensus       204 l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~--~~l~---~  278 (311)
T d1nr0a1         204 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE--KTIP---V  278 (311)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEE---C
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEE--EEEE---C
Confidence            9999999999999999988776653       58889999999999999999999999999999998643  2232   2


Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECC
Q 005342          632 GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP  666 (701)
Q Consensus       632 ~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~  666 (701)
                      ++. ....+.++.|+  +..+++ +.||.|++||.+
T Consensus       279 ~~~-~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         279 GTR-IEDQQLGIIWT--KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CSS-GGGCEEEEEEC--SSCEEEEETTCCEEEEETT
T ss_pred             CCC-ccceEEEEEec--CCEEEEEECCCEEEEEeCC
Confidence            321 11344555554  556766 589999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-33  Score=297.41  Aligned_cols=306  Identities=13%  Similarity=0.126  Sum_probs=230.5

Q ss_pred             CcccccccCcccee----EEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcc
Q 005342          307 DKLKFPSMDKSRLL----SLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLD  376 (701)
Q Consensus       307 ~~i~iwd~~~~~~~----~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (701)
                      +...+|+....+..    ....+|.+.|.  |++||||      +.|++|+|||+.+++.+..          +.++...
T Consensus        38 ~~~~~~~~~~~~~~~~~l~~~~~H~~~V~--~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~----------~~~~~~~  105 (388)
T d1erja_          38 DYYILYNPALPREIDVELHKSLDHTSVVC--CVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR----------LSDDSAA  105 (388)
T ss_dssp             SCEEEECTTSCCCEEEEEEEEEECSSCCC--EEEECTTSSEEEEECBSCEEEEETTTCCEEEE----------ECC----
T ss_pred             CcEEEeCCCCCcceeeeeEeeCCCCCcEE--EEEECCCCCEEEEEeCCeEEEEEecccceEee----------ecccccc
Confidence            44456665443322    22336999999  9999999      6699999999999988776          3332210


Q ss_pred             cccCCCCC-CCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC
Q 005342          377 ASSGDDSN-DSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD  454 (701)
Q Consensus       377 ~s~~D~~~-~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~  454 (701)
                      ...  ... ......+|.. |.+++|+|+|++|++|+.||.|++|+..    .++...   ...+|...|.++.+++++.
T Consensus       106 ~~~--~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~----~~~~~~---~~~~h~~~v~~~~~~~~~~  176 (388)
T d1erja_         106 NKD--PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE----NRKIVM---ILQGHEQDIYSLDYFPSGD  176 (388)
T ss_dssp             ---------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEECTTSS
T ss_pred             ccc--ccccccccccCCCCCEEEEEECCCCCcceeccccccccccccc----cccccc---ccccccccccccccccccc
Confidence            000  000 0111346777 9999999999999999999999999997    555444   2346889999999999999


Q ss_pred             EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEE
Q 005342          455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIF  530 (701)
Q Consensus       455 ~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iw  530 (701)
                      .+++++.++.+++||.                     .+...... .  .+.....++.+.   +.+|++++ ||.|++|
T Consensus       177 ~~~~~~~~~~i~~~d~---------------------~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~  232 (388)
T d1erja_         177 KLVSGSGDRTVRIWDL---------------------RTGQCSLT-L--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW  232 (388)
T ss_dssp             EEEEEETTSEEEEEET---------------------TTTEEEEE-E--ECSSCEEEEEECSTTCCEEEEEETTSCEEEE
T ss_pred             cccccccceeeeeeec---------------------cccccccc-c--ccccccccccccCCCCCeEEEEcCCCeEEEe
Confidence            9999999999999965                     33443321 1  233445555555   78999999 9999999


Q ss_pred             eCCCCcEEEEec-------CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc------------eEEeecCCCCCeE
Q 005342          531 SLETFQTLATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK------------TKAKLKGHQNRIT  590 (701)
Q Consensus       531 d~~~~~~~~~~~-------~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~------------~~~~l~~h~~~V~  590 (701)
                      |..++.....+.       +|...|++++|+|++ ++++|+.||.|++||++++.            .......|...|.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  312 (388)
T d1erja_         233 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL  312 (388)
T ss_dssp             ETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEE
T ss_pred             ecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEE
Confidence            999988776653       567889999999999 99999999999999987653            2344556889999


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEE------cCCCCEEEEE-ecCeEEEE
Q 005342          591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF------HPDQIHLLSI-HEGQIDVY  663 (701)
Q Consensus       591 ~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~------spdg~~l~sg-~Dg~I~iw  663 (701)
                      +++|+|++++|++|+.||+|++||+++++++  ..+.    +|.   +.|+++++      +|++++|++| .||+|+||
T Consensus       313 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~--~~l~----~H~---~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW  383 (388)
T d1erja_         313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPL--LMLQ----GHR---NSVISVAVANGSSLGPEYNVFATGSGDCKARIW  383 (388)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTCCEE--EEEE----CCS---SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCcEE--EEEe----CCC---CCEEEEEEecCcccCCCCCEEEEEeCCCEEEEE
Confidence            9999999999999999999999999998643  2333    565   88999875      6789999996 79999999


Q ss_pred             ECC
Q 005342          664 EAP  666 (701)
Q Consensus       664 d~~  666 (701)
                      +++
T Consensus       384 ~~~  386 (388)
T d1erja_         384 KYK  386 (388)
T ss_dssp             EEE
T ss_pred             eee
Confidence            984

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-33  Score=289.57  Aligned_cols=261  Identities=11%  Similarity=0.046  Sum_probs=221.5

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      +|.. |.+++|+|+|++|++|+ ||.|+|||+...........  ....+|.+.|.+++|+|||++|++|+.||.|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~--~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE--EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEE--eeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence            7888 99999999999999998 79999999974332222222  12346888999999999999999999999999998


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP  546 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~  546 (701)
                      +..                   .++..... + ..|...+.+++++  +.++++++ |+.|++||+.+++......+|..
T Consensus       126 ~~~-------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~  184 (337)
T d1gxra_         126 LAA-------------------PTPRIKAE-L-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD  184 (337)
T ss_dssp             CCC-------------------C--EEEEE-E-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             ccc-------------------cccccccc-c-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            732                   23333221 2 3678899999999  78889888 89999999999999999999999


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342          547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF  625 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~  625 (701)
                      .+.+++|++++ .+++|+.|+.|++||+++++.+..+. |.+.|.+++|+|+++++++|+.|+.|++||+.+++...   
T Consensus       185 ~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---  260 (337)
T d1gxra_         185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---  260 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---
T ss_pred             ccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccccc---
Confidence            99999999999 99999999999999999999888775 88899999999999999999999999999999875321   


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEEEeeE
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQIV  686 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~~  686 (701)
                      .    ..|.   ..|++++|+|+|++|+++ .||.|++||+.+++.+..+..   |++++|+|+.
T Consensus       261 ~----~~~~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~  318 (337)
T d1gxra_         261 L----HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD  318 (337)
T ss_dssp             E----CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTS
T ss_pred             c----cccc---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCC
Confidence            1    1444   889999999999999996 799999999999999988776   9999999864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-32  Score=282.09  Aligned_cols=280  Identities=13%  Similarity=0.146  Sum_probs=227.5

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      +..++|++|.+.|.  +++|+|+       +.||+|+|||+.+++.+..+                             .
T Consensus        46 ~~~~tL~GH~~~I~--~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~-----------------------------~   94 (340)
T d1tbga_          46 RTRRTLRGHLAKIY--AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-----------------------------P   94 (340)
T ss_dssp             CEEEEECCCSSCEE--EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-----------------------------E
T ss_pred             eeeEEECCCCCCEE--EEEECCCCCEEEEEECCCceeeeecccceeEEEE-----------------------------e
Confidence            67788999999999  9999999       88999999999998877662                             3


Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  469 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  469 (701)
                      +|.. |.+++|+|++.++++|+.|+.+.+|+............   ...+|.......... .+..+..+..++....+.
T Consensus        95 ~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  170 (340)
T d1tbga_          95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR---ELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWD  170 (340)
T ss_dssp             CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEE---EECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEE
T ss_pred             cccccEEeeEeeccceeeeeecccceeecccccccccccccce---ecccccccccccccc-cccccccccccccccccc
Confidence            5667 99999999999999999999999999874333332222   223455555555444 455678888888888885


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP  546 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~  546 (701)
                      .                     ........ . ..+...+....+.  +.++++++ |+.|++||+++++.+.++.+|..
T Consensus       171 ~---------------------~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~  227 (340)
T d1tbga_         171 I---------------------ETGQQTTT-F-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES  227 (340)
T ss_dssp             T---------------------TTTEEEEE-E-ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSS
T ss_pred             c---------------------cccccccc-c-cccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCC
Confidence            4                     22222211 1 2456677777777  77888888 99999999999999999999999


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342          547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                      .|++++|+|++ ++++|+.||.|++||++....+..+.  .|...|++++|+|++++|++|+.||.|++||+.+++..  
T Consensus       228 ~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~--  305 (340)
T d1tbga_         228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA--  305 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEE--
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEE--
Confidence            99999999999 99999999999999999988777654  46678999999999999999999999999999997633  


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                      ..+.    +|.   .+|++++|+|++++|++| .||+|+|||
T Consensus       306 ~~~~----~H~---~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         306 GVLA----GHD---NRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEC----CCS---SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEc----CCC---CCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            2222    665   899999999999999996 799999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-32  Score=281.79  Aligned_cols=250  Identities=12%  Similarity=0.134  Sum_probs=209.0

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      +..++++|+|+.|+.++. +.+.+|++.    ......   .+.+|.+.|++++|+|+|++|++|+.||.|++||+....
T Consensus        20 ~~~~a~~~~g~~l~~~~~-~~v~i~~~~----~~~~~~---~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYCNG-TSVYTVPVG----SLTDTE---IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             CCCCEECTTSSEEEEEET-TEEEEEETT----CSSCCE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             eEEEEEcCCCCEEEEEeC-CEEEEEECC----CCceeE---EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence            456889999999999864 679999997    443333   224689999999999999999999999999999773321


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C--CeEEEEeCCCCcEEEEecCCCCCeE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--GKISIFSLETFQTLATFANPPPIAT  549 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d--g~I~iwd~~~~~~~~~~~~~~~~i~  549 (701)
                                         .... ..+ ..|..+|.+++|+  ++++++++ +  ..+++|++++++...++.+|...|+
T Consensus        92 -------------------~~~~-~~~-~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~  150 (311)
T d1nr0a1          92 -------------------HILK-TTI-PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN  150 (311)
T ss_dssp             -------------------CCEE-EEE-ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred             -------------------cccc-ccc-ccccCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                               1111 112 4688899999999  88888887 3  5699999999999999999999999


Q ss_pred             EEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeee
Q 005342          550 YFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH  627 (701)
Q Consensus       550 ~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~  627 (701)
                      +++|+|++  .+++|+.|+.|++||+++++....+.+|..+|++++|+|+++++++++.|+.|++||..++.........
T Consensus       151 ~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~  230 (311)
T d1nr0a1         151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD  230 (311)
T ss_dssp             EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred             cccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccc
Confidence            99999999  6889999999999999999999999999999999999999999999999999999999997644322111


Q ss_pred             -eccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          628 -SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       628 -~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                       ....+|.   ..|++++|+|++++|++| .||+|+|||+++++++++++.
T Consensus       231 ~~~~~~h~---~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~  278 (311)
T d1nr0a1         231 SLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV  278 (311)
T ss_dssp             TSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cccccccc---ccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC
Confidence             0122444   899999999999999996 799999999999999999875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-32  Score=279.43  Aligned_cols=315  Identities=15%  Similarity=0.163  Sum_probs=239.9

Q ss_pred             eEEEeecCcce-eeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          320 LSLIKQIMDWW-VPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       320 ~~~l~~h~~~v-~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      ..+|++|.+.| .  |++|+++     +.|++|+|||+.+++++..                             +.+|.
T Consensus         5 ~~tL~GH~~~vit--c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~-----------------------------l~~H~   53 (355)
T d1nexb2           5 RTTLRGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQ-----------------------------LSGHD   53 (355)
T ss_dssp             EEEEECCSSSCEE--EEEEETTEEEEEETTTEEEEEETTTTEEEEE-----------------------------EECCS
T ss_pred             cEEECCcCCCcEE--EEEECCCEEEEEeCCCeEEEEECCCCcEEEE-----------------------------EECCC
Confidence            45789998876 5  8899887     8899999999999988776                             24677


Q ss_pred             c-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342          394 Q-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  472 (701)
Q Consensus       394 ~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  472 (701)
                      . |.+++|+|+ .+|++|+.|+.|++|+..    ...+.... ....+...+....+++++.++++++.|+.+++||+..
T Consensus        54 ~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~  127 (355)
T d1nexb2          54 GGVWALKYAHG-GILVSGSTDRTVRVWDIK----KGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK  127 (355)
T ss_dssp             SCEEEEEEETT-TEEEEEETTCCEEEEETT----TTEEEEEE-CCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC
T ss_pred             CCEEEEEEcCC-CEEEEEeccccccccccc----cccccccc-ccccccccccccccccccceeeeecCCCcEEEEEccC
Confidence            7 999999986 589999999999999997    44433322 2223445566778899999999999999999999876


Q ss_pred             CCcccccc-ccceeeEEeeCCC-CeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeE
Q 005342          473 NKQSLEEE-NVNMESQLYQPSS-KLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT  549 (701)
Q Consensus       473 ~~~~~g~~-~~~~~i~~~d~~~-~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~  549 (701)
                      ........ ............. .....  ....|...+.....+++.++++. |+.|++||+.+++.+....++...+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  205 (355)
T d1nexb2         128 ESSVPDHGEEHDYPLVFHTPEENPYFVG--VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY  205 (355)
T ss_dssp             -----------CCCEEESCTTTCTTEEE--EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             Cceeccccccceeccceeccccccceee--eeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccc
Confidence            54411100 0000111111111 11111  11245666666655588999988 99999999999999999998999999


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          550 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       550 ~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                      ++.++|++ .+++++.|+.|++||.+++..+..+.+|...|.+++|+  +++|++|+.||+|++||+.++...    +. 
T Consensus       206 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~----~~-  278 (355)
T d1nexb2         206 STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK----FS-  278 (355)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE----EE-
T ss_pred             cccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccccee----cc-
Confidence            99999999 99999999999999999999999999999999999886  479999999999999999986422    22 


Q ss_pred             ccCCCCCCCCCeEE-EEEcCCCCEEEEEecCeEEEEECCCCceeee-eee----eeEEEEEeeE
Q 005342          629 FQTGLVPETTIVNH-IQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ-VLL----ISHIMFVQIV  686 (701)
Q Consensus       629 ~~~~~~~~~~~v~~-v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~-l~~----i~~~~fs~~~  686 (701)
                        .++    ..+.+ ..++++++++++|.|++|+|||+++|++++. +.+    |.+++|+|..
T Consensus       279 --~~~----~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~  336 (355)
T d1nexb2         279 --YHH----TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT  336 (355)
T ss_dssp             --EEC----TTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE
T ss_pred             --ccc----CCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe
Confidence              122    33443 4567889988888999999999999998864 333    9999998763

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.3e-32  Score=284.04  Aligned_cols=284  Identities=10%  Similarity=0.077  Sum_probs=220.4

Q ss_pred             CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342          327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES  398 (701)
Q Consensus       327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l  398 (701)
                      .++|.  |++||||       +.|+.|+|||+.+++....                           ..|++|.. |.++
T Consensus         7 ~~pIt--~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~---------------------------~~l~gH~~~V~~l   57 (371)
T d1k8kc_           7 VEPIS--CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV---------------------------HELKEHNGQVTGV   57 (371)
T ss_dssp             SSCCC--EEEECTTSSEEEEECSSSEEEEEEEETTEEEEE---------------------------EEEECCSSCEEEE
T ss_pred             CCCeE--EEEECCCCCEEEEEeCCCEEEEEECCCCCEEEE---------------------------EEecCCCCCEEEE
Confidence            45688  9999999       7899999999987764332                           12468888 9999


Q ss_pred             EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccc
Q 005342          399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  478 (701)
Q Consensus       399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g  478 (701)
                      +|+|++++|++|+.|++|++|++.    .+..... ....+|...|.+++|+|+++.+++|+.|+.+++|++        
T Consensus        58 ~fsp~~~~l~s~s~D~~i~vWd~~----~~~~~~~-~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~--------  124 (371)
T d1k8kc_          58 DWAPDSNRIVTCGTDRNAYVWTLK----GRTWKPT-LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF--------  124 (371)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEE----TTEEEEE-EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE--------
T ss_pred             EECCCCCEEEEEECCCeEEEEeec----ccccccc-cccccccccccccccccccccceeecccCcceeeee--------
Confidence            999999999999999999999997    4443321 233457889999999999999999999999999977        


Q ss_pred             ccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC------------------cE
Q 005342          479 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF------------------QT  537 (701)
Q Consensus       479 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~------------------~~  537 (701)
                                 +..............|...|.+++|+  +.+|++|+ |+.|++||....                  ..
T Consensus       125 -----------~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (371)
T d1k8kc_         125 -----------EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  193 (371)
T ss_dssp             -----------ETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             -----------ecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceee
Confidence                       33333322111335788999999999  88999999 999999997543                  34


Q ss_pred             EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC-
Q 005342          538 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA-  615 (701)
Q Consensus       538 ~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~-  615 (701)
                      +....+|...|.+++|+|+| ++++++.|+.|++||+.++..+..+.+|..+|.+++|+|++++|++|+ |+.+++|+. 
T Consensus       194 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYD  272 (371)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEE
T ss_pred             eeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEee
Confidence            55666788899999999999 999999999999999999999999999999999999999998888665 666666544 


Q ss_pred             -CCCeeeeeeee---------------------------------eeccCCCCCCCCCeEEEEEcCCC----CEEEEE-e
Q 005342          616 -VGWKKLCSKFL---------------------------------HSFQTGLVPETTIVNHIQFHPDQ----IHLLSI-H  656 (701)
Q Consensus       616 -~~g~~~~~~~l---------------------------------~~~~~~~~~~~~~v~~v~~spdg----~~l~sg-~  656 (701)
                       ..+.......+                                 ..+...   |.+.|+++++.|.+    ..++++ .
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---H~~~I~~i~~~~~~~~~~~~~~T~g~  349 (371)
T d1k8kc_         273 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL---HKNSVSQISVLSGGKAKCSQFCTTGM  349 (371)
T ss_dssp             TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS---SSSCEEEEEEEESTTTSCSEEEEEET
T ss_pred             CCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceeccc---ccCCEEEEEEeCCCCcceEEEEEEcC
Confidence             33321110000                                 000011   34889999998864    357775 7


Q ss_pred             cCeEEEEECCC
Q 005342          657 EGQIDVYEAPT  667 (701)
Q Consensus       657 Dg~I~iwd~~~  667 (701)
                      ||.|+|||+++
T Consensus       350 Dg~v~iW~~~~  360 (371)
T d1k8kc_         350 DGGMSIWDVRS  360 (371)
T ss_dssp             TSEEEEEEHHH
T ss_pred             CCeEEEEeCCc
Confidence            99999999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-32  Score=277.63  Aligned_cols=280  Identities=12%  Similarity=0.104  Sum_probs=214.6

Q ss_pred             cceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342          317 SRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF  389 (701)
Q Consensus       317 ~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l  389 (701)
                      |++.+.+.||.+.|.  +++|+|+       +.|++|++||+.++++...+          .                  
T Consensus         2 g~~~~~~~GH~~~V~--~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~----------~------------------   51 (299)
T d1nr0a2           2 GSIDQVRYGHNKAIT--ALSSSADGKTLFSADAEGHINSWDISTGISNRVF----------P------------------   51 (299)
T ss_dssp             TEEEEEECCCSSCEE--EEEECTTSSEEEEEETTSCEEEEETTTCCEEECS----------S------------------
T ss_pred             CccceEcCCCCCCcE--EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE----------c------------------
Confidence            577889999999999  9999999       89999999999999877662          1                  


Q ss_pred             cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      .+|.. |++++|+|+|+++ +++.|+.+++|+......... ..   ....+...+.+++|+|+|+.++++ .++.+.+|
T Consensus        52 ~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~  125 (299)
T d1nr0a2          52 DVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSS-KA---VANKLSSQPLGLAVSADGDIAVAA-CYKHIAIY  125 (299)
T ss_dssp             CSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTT-SC---CEEECSSCEEEEEECTTSSCEEEE-ESSEEEEE
T ss_pred             CCCCCcEEEEEeeccceee-cccceeeEEEeccCCcccccc-cc---cccccccccccccccccccccccc-cccccccc
Confidence            25777 9999999999754 556689999999863211111 11   111356789999999999976554 55788999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE-EecCC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA-TFANP  544 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~-~~~~~  544 (701)
                      +.                       ++...  .  .....+.+++++  ++++++++ ||.|++||+++++... ....|
T Consensus       126 ~~-----------------------~~~~~--~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~  178 (299)
T d1nr0a2         126 SH-----------------------GKLTE--V--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH  178 (299)
T ss_dssp             ET-----------------------TEEEE--E--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEEC
T ss_pred             cc-----------------------ccccc--c--ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            53                       11111  1  123467889998  88899998 9999999998776543 33458


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE---EeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~---~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      ...|++++|+|++ ++++++.|+.|++||+.++...   ..+.+|...|++++|+|++++|++|+.||.|++||++++..
T Consensus       179 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence            8899999999999 9999999999999999887654   45567999999999999999999999999999999998643


Q ss_pred             eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                      ..   +.....++.   ..+.++.| +++++|+++ .|++|++||+.
T Consensus       259 ~~---~~~~~~~~~---~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         259 HP---IIIKGAHAM---SSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CC---EEETTSSTT---SCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             ce---EEEecCCCC---CcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            22   221223333   56776655 556777775 89999999983

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-31  Score=271.99  Aligned_cols=263  Identities=18%  Similarity=0.258  Sum_probs=228.3

Q ss_pred             CccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342          386 SSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT  464 (701)
Q Consensus       386 ~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  464 (701)
                      ...|+||.. |++++|+|++++|+||+.||+|++||+.    ++++..   ...+|...|.+++|+|++.++++++.++.
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~----~~~~~~---~~~~h~~~V~~~~~~~~~~~~~~~~~~~~   82 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE----TGDFER---TLKGHTDSVQDISFDHSGKLLASCSADMT   82 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETT----TCCCCE---EECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC----CCCEEE---EEeCCCCcEEEEeeecccccccccccccc
Confidence            335889999 9999999999999999999999999998    554443   33468999999999999999999999999


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF  541 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~  541 (701)
                      +..|+.                     .......  ....|...+.++.++  ++.+++++ |+.+++||+++++.+..+
T Consensus        83 ~~~~~~---------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  139 (317)
T d1vyhc1          83 IKLWDF---------------------QGFECIR--TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  139 (317)
T ss_dssp             CCEEET---------------------TSSCEEE--CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cccccc---------------------ccccccc--ccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE
Confidence            999865                     3333222  224678889999999  88899998 999999999999999999


Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC--------------------CE
Q 005342          542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL--------------------NV  600 (701)
Q Consensus       542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg--------------------~~  600 (701)
                      .+|...+.+++++|++ ++++|+.|+.|++|+..+++....+.+|...+.+++|+|++                    .+
T Consensus       140 ~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (317)
T d1vyhc1         140 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF  219 (317)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred             ccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCce
Confidence            9999999999999999 99999999999999999999999999999999999998764                    47


Q ss_pred             EEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---
Q 005342          601 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---  676 (701)
Q Consensus       601 l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---  676 (701)
                      +++++.|+.|++||+.+++.+  ..+.    +|.   ..|.+++|+|++++|++| .||.|++||+.+++++.++.+   
T Consensus       220 ~~~~~~d~~i~~~~~~~~~~~--~~~~----~~~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~  290 (317)
T d1vyhc1         220 LLSGSRDKTIKMWDVSTGMCL--MTLV----GHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH  290 (317)
T ss_dssp             EEEEETTSEEEEEETTTTEEE--EEEE----CCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS
T ss_pred             eEeccCCCEEEEEECCCCcEE--EEEe----CCC---CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC
Confidence            899999999999999998633  2233    555   899999999999999986 799999999999999999987   


Q ss_pred             -eeEEEEEeeEE
Q 005342          677 -ISHIMFVQIVV  687 (701)
Q Consensus       677 -i~~~~fs~~~~  687 (701)
                       |++++|+|+..
T Consensus       291 ~V~~~~~s~~~~  302 (317)
T d1vyhc1         291 FVTSLDFHKTAP  302 (317)
T ss_dssp             CEEEEEECSSSS
T ss_pred             CEEEEEEcCCCC
Confidence             99999998643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-31  Score=278.93  Aligned_cols=263  Identities=14%  Similarity=0.135  Sum_probs=206.9

Q ss_pred             CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-ee--------------cCCCCCCCCEEEEEEecCCC
Q 005342          391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LL--------------LPDNSFGGRVVRLIYSHSGD  454 (701)
Q Consensus       391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~--------------~~~~~~~~~v~~l~~spdg~  454 (701)
                      +|.+ |++++|+|||++||+|+ |+.|++|++.    .+++.. +.              .....|...|.+++|+|+|+
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~  134 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVS----DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  134 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETT----TCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEec----ccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence            6888 99999999999999987 8999999997    333211 10              11124677899999999999


Q ss_pred             EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEe
Q 005342          455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS  531 (701)
Q Consensus       455 ~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd  531 (701)
                      +|++|+.||.|++||.                     ..++.+.. . .+|...|.+++++  +..+++++ ++.+++||
T Consensus       135 ~l~s~~~dg~v~i~~~---------------------~~~~~~~~-~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d  191 (388)
T d1erja_         135 FLATGAEDRLIRIWDI---------------------ENRKIVMI-L-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD  191 (388)
T ss_dssp             EEEEEETTSCEEEEET---------------------TTTEEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cceecccccccccccc---------------------cccccccc-c-ccccccccccccccccccccccccceeeeeee
Confidence            9999999999999965                     45554432 2 4789999999999  78888888 89999999


Q ss_pred             CCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee-------cCCCCCeEEEEEecCCCEEEE
Q 005342          532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       532 ~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l-------~~h~~~V~~v~~spdg~~l~s  603 (701)
                      ..+.........+...+....+.+++ ++++|+.||.|++||..++..+..+       .+|.+.|++++|+|++++|++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  271 (388)
T d1erja_         192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  271 (388)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEE
Confidence            99988887777555544444444567 9999999999999999998776654       358889999999999999999


Q ss_pred             EeCCCeEEEEECCCCeeeee-------eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342          604 SGADAQLCVWDAVGWKKLCS-------KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       604 ~s~D~~I~vwd~~~g~~~~~-------~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      |+.|+.|++||+.++.....       .... ....|.   ..|++++|+|+|++|++| .||.|++||+.+++++.++.
T Consensus       272 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEV-TYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             EETTSEEEEEEC---------------CEEE-EEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EECCCcEEEEeccCCccccccccccccceee-eccccc---ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence            99999999999987643211       1111 122444   889999999999999996 79999999999999999998


Q ss_pred             e----eeEEEEEee
Q 005342          676 L----ISHIMFVQI  685 (701)
Q Consensus       676 ~----i~~~~fs~~  685 (701)
                      +    |+++++++.
T Consensus       348 ~H~~~V~~~~~~~~  361 (388)
T d1erja_         348 GHRNSVISVAVANG  361 (388)
T ss_dssp             CCSSCEEEEEECSS
T ss_pred             CCCCCEEEEEEecC
Confidence            7    888887653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.4e-31  Score=271.70  Aligned_cols=267  Identities=15%  Similarity=0.164  Sum_probs=222.3

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .|+||.+ |++++|+|++++||+|+.||+|++||+.    +++...   ....|...|.+++|+|+++++++|+.|+.+.
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~----~~~~~~---~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY----TTNKVH---AIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT----TTEEEE---EEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecc----cceeEE---EEecccccEEeeEeeccceeeeeecccceee
Confidence            4779999 9999999999999999999999999998    554433   2235889999999999999999999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~  544 (701)
                      +|+.....                 ........ + .+|.......... +..+.... +.....++..+.........+
T Consensus       123 ~~~~~~~~-----------------~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (340)
T d1tbga_         123 IYNLKTRE-----------------GNVRVSRE-L-AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH  183 (340)
T ss_dssp             EEESSSSC-----------------SCCCEEEE-E-CCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECC
T ss_pred             cccccccc-----------------ccccccee-c-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            99864321                 11111111 2 3566666666666 77777777 899999999888777777778


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  623 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~  623 (701)
                      ...+....+.+.+ ++++|+.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++|+.|+.|++||+........
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~  263 (340)
T d1tbga_         184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT  263 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccc
Confidence            8889999999999 999999999999999999999999999999999999999999999999999999999998753321


Q ss_pred             eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342          624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV  687 (701)
Q Consensus       624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~  687 (701)
                        +. .. .+.   ..|++++|+|++++|++| .||.|++||+.+++++.++.+    |++++|+|+..
T Consensus       264 --~~-~~-~~~---~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~  325 (340)
T d1tbga_         264 --YS-HD-NII---CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             --EC-CT-TCC---SCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             --cc-cc-ccc---CceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC
Confidence              11 11 232   789999999999999996 799999999999999999987    99999998643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-30  Score=263.12  Aligned_cols=305  Identities=16%  Similarity=0.212  Sum_probs=234.9

Q ss_pred             cccCccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCC
Q 005342          312 PSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDS  386 (701)
Q Consensus       312 wd~~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~  386 (701)
                      |+..+.++...|++|.+.|.+ |+.|+.+     +.|++|+|||+.+++++..          +                
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~----------~----------------   53 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT----------L----------------   53 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE----------C----------------
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEE----------E----------------
Confidence            677778888999999998852 7777777     8999999999999988776          2                


Q ss_pred             ccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342          387 SCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH  465 (701)
Q Consensus       387 ~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i  465 (701)
                         .+|.. |.+++|+|+  +|++|+.|+.+++|+..    ........   ..+...+.....  .+..+..+..|+.+
T Consensus        54 ---~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~d~~i  119 (342)
T d2ovrb2          54 ---VGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE----TGECIHTL---YGHTSTVRCMHL--HEKRVVSGSRDATL  119 (342)
T ss_dssp             ---CCCSSCEEEEEEETT--EEEEEETTSCEEEEETT----TTEEEEEE---CCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred             ---eCCCCCEEEEEeCCC--ccccceecccccccccc----cccceecc---cccceeEeeeec--ccccccccccceeE
Confidence               46777 999999986  99999999999999987    33322211   123444544443  45567888999999


Q ss_pred             EEEecCCCCcc---------------ccccc----cceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CC
Q 005342          466 KLWKWQSNKQS---------------LEEEN----VNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GG  525 (701)
Q Consensus       466 ~vwd~~~~~~~---------------~g~~~----~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg  525 (701)
                      .+|+..+....               .....    ....+++||...+..+.. + .+|...+..+.+++.++++++ ||
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~s~~~dg  197 (342)
T d2ovrb2         120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT-L-QGHTNRVYSLQFDGIHVVSGSLDT  197 (342)
T ss_dssp             EEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEE-E-CCCSSCEEEEEECSSEEEEEETTS
T ss_pred             EEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEE-E-cCcccccccccCCCCEEEEEeCCC
Confidence            99998776540               00000    012378889888876643 2 467777777777788999999 99


Q ss_pred             eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC---CCCCeEEEEEecCCCEEE
Q 005342          526 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLAYSLSLNVLV  602 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~v~~spdg~~l~  602 (701)
                      .|++||+++++.+..+.+|...+.+++++++ ++++|+.||.|++||+.+.+....+.+   |...+.++.+  ++++++
T Consensus       198 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  274 (342)
T d2ovrb2         198 SIRVWDVETGNCIHTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVI  274 (342)
T ss_dssp             CEEEEETTTCCEEEEECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEE
T ss_pred             eEEEeecccceeeeEecccccceeEEecCCC-EEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeE
Confidence            9999999999999999999999988877655 899999999999999999888877776   4455665555  567999


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCe----EEEEECC
Q 005342          603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ----IDVYEAP  666 (701)
Q Consensus       603 s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~----I~iwd~~  666 (701)
                      +|+.||+|++||+++|+.+...... ...+|.   ..|++++|+|++.++++| .||+    |++||+.
T Consensus       275 s~s~Dg~i~iwd~~tg~~i~~~~~~-~~~~~~---~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         275 TSSDDGTVKLWDLKTGEFIRNLVTL-ESGGSG---GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEEEC-TTGGGT---CEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEcCCCEEEEEECCCCCEEEEEecc-cCCCCC---CCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            9999999999999998755432222 223444   789999999999999997 6775    9999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=4.3e-30  Score=271.17  Aligned_cols=238  Identities=11%  Similarity=0.048  Sum_probs=193.8

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      |.+++|+|||++||+|+.|+.|++|+..    +++...+. .+.+|.+.|.+++|+|++++|++|+.|+.|++||+.   
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~----~~~~~~~~-~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~---   81 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKS----GNKWVQVH-ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK---   81 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEE----TTEEEEEE-EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE---
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECC----CCCEEEEE-EecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec---
Confidence            8899999999999999999999999997    55433222 334699999999999999999999999999999762   


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE----EEEecCCCCC
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT----LATFANPPPI  547 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~----~~~~~~~~~~  547 (701)
                                        ++.........+|...|.+++|+  ++.+++++ |+.|++|++.....    .....+|...
T Consensus        82 ------------------~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~  143 (371)
T d1k8kc_          82 ------------------GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST  143 (371)
T ss_dssp             ------------------TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred             ------------------ccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccc
Confidence                              22211111114678899999999  88999999 99999999876542    3344578889


Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEEeCCCC------------------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 005342          548 ATYFILLPQD-LFAFGFDDSSILVHCPCTK------------------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADA  608 (701)
Q Consensus       548 i~~l~~spdg-~l~~gs~dg~I~iwd~~~~------------------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~  608 (701)
                      |.+++|+|++ +|++|+.|+.|++||....                  ..+....+|.+.|.+++|+|+|++|++++.|+
T Consensus       144 v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~  223 (371)
T d1k8kc_         144 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS  223 (371)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred             cccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC
Confidence            9999999999 9999999999999997642                  34566678999999999999999999999999


Q ss_pred             eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342          609 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT  667 (701)
Q Consensus       609 ~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~  667 (701)
                      +|++||+.++...  ..+.    +|.   .+|++++|+||+++|++|.|+.+++|....
T Consensus       224 ~i~iwd~~~~~~~--~~~~----~~~---~~v~s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         224 TVCLADADKKMAV--ATLA----SET---LPLLAVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             EEEEEEGGGTTEE--EEEE----CSS---CCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             cceEEeeecccce--eeee----ccc---ccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence            9999999987532  2222    444   789999999999999999888877766544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=5.2e-29  Score=253.66  Aligned_cols=249  Identities=15%  Similarity=0.106  Sum_probs=194.8

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .+.||.. |++++|+|||++|++|+.||+|++||+.    ++++...  ....|...|.+++|+|+|+ +++++.|+.++
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~----~~~~~~~--~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS----TGISNRV--FPDVHATMITGIKTTSKGD-LFTVSWDDHLK   79 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TCCEEEC--SSCSCSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECC----CCcEEEE--EcCCCCCcEEEEEeeccce-eecccceeeEE
Confidence            4679999 9999999999999999999999999997    5654441  1245889999999999997 56778899999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCC
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~  544 (701)
                      +|+......                ......    ...+...+.+++++  |..+++++++.+.+|+...  .....  .
T Consensus        80 ~~~~~~~~~----------------~~~~~~----~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~  135 (299)
T d1nr0a2          80 VVPAGGSGV----------------DSSKAV----ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--I  135 (299)
T ss_dssp             EECSSSSSS----------------CTTSCC----EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--C
T ss_pred             EeccCCccc----------------cccccc----ccccccccccccccccccccccccccccccccccc--ccccc--c
Confidence            997643211                111111    12356778899998  7777777789999999643  22222  3


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  622 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~  622 (701)
                      ...+.+++++|++ ++++|+.||.|++||+++++... ....|...|++++|+|++++|++++.|+.|++||+.++....
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4567899999999 99999999999999998876544 334589999999999999999999999999999998864321


Q ss_pred             eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeee
Q 005342          623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ  673 (701)
Q Consensus       623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~  673 (701)
                        ... ...+|.   ..|++++|+|++++|++| .||.|++||+.+++....
T Consensus       216 --~~~-~~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~  261 (299)
T d1nr0a2         216 --HTN-SWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI  261 (299)
T ss_dssp             --CCC-CCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred             --ccc-cccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceE
Confidence              222 122454   899999999999999996 799999999988765443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-28  Score=253.96  Aligned_cols=246  Identities=13%  Similarity=0.163  Sum_probs=186.4

Q ss_pred             ccCCC-c-eEEEEEcC--CCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEecCCCEEEEEEC--
Q 005342          389 FNDNN-Q-SRESTSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALTQ--  461 (701)
Q Consensus       389 l~~h~-~-V~~l~~sp--dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spdg~~l~s~s~--  461 (701)
                      +.+|. . |++++|+|  +|.+|++|+.||+|++||+........... .......|.++|.+++|+++|+++++++.  
T Consensus        58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~  137 (325)
T d1pgua1          58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR  137 (325)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS
T ss_pred             EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccc
Confidence            34664 4 99999998  678999999999999999874322211111 11112347789999999999999988775  


Q ss_pred             CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EEEEEe-CCeEEEEeCCCCcE
Q 005342          462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQT  537 (701)
Q Consensus       462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l~s~s-dg~I~iwd~~~~~~  537 (701)
                      ++.+.+|++                     ++++.+.. + .+|...|.+++|+  +. .+++++ |+.+++||..+++.
T Consensus       138 ~~~~~~~~~---------------------~~~~~~~~-~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~  194 (325)
T d1pgua1         138 DNFGVFISW---------------------DSGNSLGE-V-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF  194 (325)
T ss_dssp             SCSEEEEET---------------------TTCCEEEE-C-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred             cceEEEEee---------------------ccccccee-e-eecccccccccccccccceEEEeeccccccccccccccc
Confidence            577888855                     45555443 3 4789999999999  44 467787 99999999988876


Q ss_pred             EEEec---CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe---cCCCEEEEEeCCCe
Q 005342          538 LATFA---NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS---LSLNVLVSSGADAQ  609 (701)
Q Consensus       538 ~~~~~---~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s---pdg~~l~s~s~D~~  609 (701)
                      ...+.   +|...|++++|+|++  ++++|+.|+.|++||+++++.+..+.+|..++.++.|+   |+|++|++++.|++
T Consensus       195 ~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~  274 (325)
T d1pgua1         195 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT  274 (325)
T ss_dssp             EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred             ceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe
Confidence            66553   456789999999985  99999999999999999999999999998887766666   78999999999999


Q ss_pred             EEEEECCCCeeeeeeeeeeccCCCCCCCCCeE--EEEEcCCCCEEEE-EecCeEEEEEC
Q 005342          610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN--HIQFHPDQIHLLS-IHEGQIDVYEA  665 (701)
Q Consensus       610 I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~--~v~~spdg~~l~s-g~Dg~I~iwd~  665 (701)
                      |+|||+++++.+......    ++.   ..+.  ++.|.+++ +|++ |.||+|+|||+
T Consensus       275 i~iwd~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         275 IRVWDVTTSKCVQKWTLD----KQQ---LGNQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEETTTTEEEEEEECC----TTC---GGGCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             EEEEECCCCCEEEEEEec----CCc---ccCeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            999999998644322222    221   3333  44455544 5566 57999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.4e-28  Score=252.98  Aligned_cols=291  Identities=14%  Similarity=0.131  Sum_probs=220.0

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG  380 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  380 (701)
                      ++|++||+.+++++..+++|.+.|.  +++|+|+      +.|++|++|+...+.+....          ..        
T Consensus        33 g~i~vWd~~~~~~~~~l~~H~~~V~--~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~----------~~--------   92 (355)
T d1nexb2          33 KMIRVYDSINKKFLLQLSGHDGGVW--ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVF----------EG--------   92 (355)
T ss_dssp             TEEEEEETTTTEEEEEEECCSSCEE--EEEEETTTEEEEEETTCCEEEEETTTTEEEEEE----------CC--------
T ss_pred             CeEEEEECCCCcEEEEEECCCCCEE--EEEEcCCCEEEEEeccccccccccccccccccc----------cc--------
Confidence            8999999999999999999999999  9999998      89999999999988776651          11        


Q ss_pred             CCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCce-------eEeecCC---------CCCCCC
Q 005342          381 DDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-------RTLLLPD---------NSFGGR  443 (701)
Q Consensus       381 D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~-------~~l~~~~---------~~~~~~  443 (701)
                               ..+.. .....++|++.++++++.|+.|++|++.........       .....+.         ..|...
T Consensus        93 ---------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d1nexb2          93 ---------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS  163 (355)
T ss_dssp             ---------CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC
T ss_pred             ---------ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccc
Confidence                     12223 567788999999999999999999998732111000       0000000         012222


Q ss_pred             EEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEE
Q 005342          444 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS  521 (701)
Q Consensus       444 v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s  521 (701)
                      +  ..+.++++.+++++.|+.+++||+                     .+++.+.. . .++...+.++.++  +..+++
T Consensus       164 v--~~~~~~~~~~~~~~~d~~i~~~d~---------------------~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~  218 (355)
T d1nexb2         164 V--RTVSGHGNIVVSGSYDNTLIVWDV---------------------AQMKCLYI-L-SGHTDRIYSTIYDHERKRCIS  218 (355)
T ss_dssp             E--EEEEEETTEEEEEETTSCEEEEET---------------------TTTEEEEE-E-CCCSSCEEEEEEETTTTEEEE
T ss_pred             c--cccccccceeeeecccceeeeeec---------------------ccccceee-e-eccccccccccccccceeeec
Confidence            3  345678899999999999999965                     44554332 1 3567788889998  888999


Q ss_pred             Ee-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEE-EEecCCC
Q 005342          522 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL-AYSLSLN  599 (701)
Q Consensus       522 ~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v-~~spdg~  599 (701)
                      ++ |+.|++||++++..+..+.+|...|.+++++++ ++++|+.||.|++||++++...  +.+|...+.++ .++++++
T Consensus       219 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~  295 (355)
T d1nexb2         219 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDN  295 (355)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSS-EEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSS
T ss_pred             ccccceEEeeeccccccccccccccccccccccccc-eeeeeeccccccccccccccee--cccccCCceEEEEEcCCCC
Confidence            98 999999999999999999999999999998754 8999999999999999887654  44566666665 5567888


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEE
Q 005342          600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE  664 (701)
Q Consensus       600 ~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd  664 (701)
                      ++++|+ |++|++||+++|+.+     .....+|.   ..|++++|+|+. ++++ +.||+++||.
T Consensus       296 ~l~~g~-d~~i~vwd~~tg~~~-----~~~~~~~~---~~V~~v~~~~~~-~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         296 ILVSGS-ENQFNIYNLRSGKLV-----HANILKDA---DQIWSVNFKGKT-LVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEEEE-TTEEEEEETTTCCBC-----CSCTTTTC---SEEEEEEEETTE-EEEEEESSSCEEEEE
T ss_pred             EEEEEe-CCEEEEEECCCCCEE-----EEEecCCC---CCEEEEEEcCCe-EEEEEECCCcEEEEE
Confidence            777665 899999999998633     22233565   899999999874 5555 4799866554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-27  Score=246.68  Aligned_cols=276  Identities=14%  Similarity=0.161  Sum_probs=210.8

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .|+||.+ |.+ +++++|++||||+.||+|++||+.    ++++..   ...+|...|.+++|+|+  ++++|+.|+.++
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~----~~~~~~---~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~   80 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV----TGKCLR---TLVGHTGGVWSSQMRDN--IIISGSTDRTLK   80 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETT----TCCEEE---ECCCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECC----CCCEEE---EEeCCCCCEEEEEeCCC--ccccceeccccc
Confidence            4789988 765 477789999999999999999998    666655   45679999999999975  899999999999


Q ss_pred             EEecCCCCcccccc-------------------ccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCe
Q 005342          467 LWKWQSNKQSLEEE-------------------NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGK  526 (701)
Q Consensus       467 vwd~~~~~~~~g~~-------------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~  526 (701)
                      +|+...........                   .....+.+|+..++..... + ..+.............+++++ |+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV-L-MGHVAAVRCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEE-E-ECCSSCEEEEEECSSCEEEEETTSC
T ss_pred             ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceee-e-ecccccceeeccccceeeeecCCCe
Confidence            99987665410000                   0112367888877775432 1 122222222222266777777 999


Q ss_pred             EEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEe
Q 005342          527 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG  605 (701)
Q Consensus       527 I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s  605 (701)
                      |++||......+..+.+|...+..+  ++++ .+++|+.||.|++||+++++.+..+.+|...+.+++++  +++|++|+
T Consensus       159 i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s  234 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN  234 (342)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE
T ss_pred             EEEeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEc
Confidence            9999999999999998887766554  4567 99999999999999999999999999999999888775  46999999


Q ss_pred             CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee--------
Q 005342          606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL--------  676 (701)
Q Consensus       606 ~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~--------  676 (701)
                      .|+.|++||+..++..  ..+. ....|.   ..+.++.++  +++++++ .||+|++||+++|++++++..        
T Consensus       235 ~d~~i~iwd~~~~~~~--~~~~-~~~~~~---~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~  306 (342)
T d2ovrb2         235 ADSTVKIWDIKTGQCL--QTLQ-GPNKHQ---SAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG  306 (342)
T ss_dssp             TTSCEEEEETTTCCEE--EEEC-STTSCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred             CCCEEEEEeccccccc--cccc-ccceee---eceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCC
Confidence            9999999999986532  2233 112232   667777665  5688885 899999999999999988853        


Q ss_pred             -eeEEEEEeeEE
Q 005342          677 -ISHIMFVQIVV  687 (701)
Q Consensus       677 -i~~~~fs~~~~  687 (701)
                       |++++|+|...
T Consensus       307 ~v~~v~~s~~~~  318 (342)
T d2ovrb2         307 VVWRIRASNTKL  318 (342)
T ss_dssp             EEEEEEECSSEE
T ss_pred             CEEEEEECCCCC
Confidence             89999998754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.7e-27  Score=240.99  Aligned_cols=265  Identities=11%  Similarity=0.093  Sum_probs=205.5

Q ss_pred             cceeEEEeecCcceeeeEEEEccC---CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342          317 SRLLSLIKQIMDWWVPYCINVMPN---ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN  393 (701)
Q Consensus       317 ~~~~~~l~~h~~~v~~~~l~fspd---s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~  393 (701)
                      .+++++|++|.+.|.  +++|+|=   +.|++|++||+.++.                                  .+|.
T Consensus         3 ~~~i~~l~gH~~~I~--~l~~s~l~sgs~Dg~v~~Wd~~~~~----------------------------------~~h~   46 (287)
T d1pgua2           3 DEVLKTISGHNKGIT--ALTVNPLISGSYDGRIMEWSSSSMH----------------------------------QDHS   46 (287)
T ss_dssp             EEEEEEECCCSSCEE--EEETTTTEEEETTSCEEETTTTEEE----------------------------------CCCC
T ss_pred             cceeEEECCCCCceE--EEEECcEEEEeCCCeEEEEECCCCC----------------------------------CCCC
Confidence            578899999999999  9999997   999999999976531                                  2677


Q ss_pred             c-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342          394 Q-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  472 (701)
Q Consensus       394 ~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  472 (701)
                      . |.++++++++ .+++++.|+++++|++..    .   .       ....+.++.+++++..+++ +.++.+.+|+.  
T Consensus        47 ~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~----~---~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--  108 (287)
T d1pgua2          47 NLIVSLDNSKAQ-EYSSISWDDTLKVNGITK----H---E-------FGSQPKVASANNDGFTAVL-TNDDDLLILQS--  108 (287)
T ss_dssp             SCEEEEECCSTT-CCEEEETTTEEEETTEEE----E---E-------CSSCEEEEEECSSSEEEEE-ETTSEEEEEET--
T ss_pred             CCEEEEEecCCC-eEEEEeeccccccccccc----c---c-------cccceeeeeeccCCceEEE-eecccceeeec--
Confidence            7 9999998764 578999999999999851    1   1       2345778888988876555 55666777743  


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-C-CeEEEEeCCCCcEEEEec-CCCCCeE
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-G-GKISIFSLETFQTLATFA-NPPPIAT  549 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-d-g~I~iwd~~~~~~~~~~~-~~~~~i~  549 (701)
                                         .++..+.. +  .+...+.+++.+++.+++++ + +.+++|++........+. .+...++
T Consensus       109 -------------------~~~~~~~~-~--~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~  166 (287)
T d1pgua2         109 -------------------FTGDIIKS-V--RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS  166 (287)
T ss_dssp             -------------------TTCCEEEE-E--ECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEE
T ss_pred             -------------------cceeeeee-c--cccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCcee
Confidence                               44443332 2  13345556665677777766 5 689999997766555554 4677899


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-eecCCCCCeEEEEEecC----------CCEEEEEeCCCeEEEEECCC
Q 005342          550 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLS----------LNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       550 ~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~v~~spd----------g~~l~s~s~D~~I~vwd~~~  617 (701)
                      +++|+|++ ++++|+.||.|++||+.+++... .+.+|..+|++++|+|+          +.++++|+.|++|++||++.
T Consensus       167 ~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             EEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence            99999999 99999999999999999987654 46789999999999875          46899999999999999987


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  665 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~  665 (701)
                      +.    ..+. ...+|.   ..|++++|+|++.++.+|.|++|++|++
T Consensus       247 ~~----~~~~-~~~~h~---~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         247 PM----KIIK-ALNAHK---DGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             TT----CCEE-ETTSST---TCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CC----eEEE-EeCCCC---CCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            43    2233 334666   8999999999986554579999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-26  Score=231.48  Aligned_cols=274  Identities=15%  Similarity=0.191  Sum_probs=209.6

Q ss_pred             eEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc
Q 005342          320 LSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ  394 (701)
Q Consensus       320 ~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~  394 (701)
                      ++....|...|+  |++|.++     +.|++|+|||+.+++++..+                             .+|..
T Consensus         8 i~~~~~~~~~V~--c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l-----------------------------~~H~~   56 (293)
T d1p22a2           8 IHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL-----------------------------TGHTG   56 (293)
T ss_dssp             EECCCSSCCCEE--EEECCSSEEEEEESSSCEEEEESSSCCEEEEE-----------------------------CCCSS
T ss_pred             EeccCCCCCCEE--EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEE-----------------------------ecCCC
Confidence            344567788899  9888766     89999999999999887772                             46777


Q ss_pred             -eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          395 -SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       395 -V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                       |.+++|  ++++|++|+.|+.+++|++.    .+.......     ........+.+....++++..++.+.+|+....
T Consensus        57 ~V~~v~~--~~~~l~s~s~D~~i~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (293)
T d1p22a2          57 SVLCLQY--DERVIITGSSDSTVRVWDVN----TGEMLNTLI-----HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP  125 (293)
T ss_dssp             CEEEEEC--CSSEEEEEETTSCEEEEESS----SCCEEEEEC-----CCCSCEEEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred             CEeeeec--ccceeecccccccccccccc----ccccccccc-----ccccccccccccccceeecccccceeEeecccc
Confidence             888876  67899999999999999997    444333221     122233446667778999999999999987432


Q ss_pred             CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI  552 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~  552 (701)
                      .                  ......  ....|...+.+..+.+..+++++ |+.|++||.++++.+..+.++...+..+.
T Consensus       126 ~------------------~~~~~~--~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  185 (293)
T d1p22a2         126 T------------------DITLRR--VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ  185 (293)
T ss_dssp             S------------------CCEEEE--EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             c------------------cccccc--cccccccccccceecccccccccCCCceeeecCCCCcEEEEEccccccccccc
Confidence            1                  111111  11367788888887777777777 99999999999999999999988888877


Q ss_pred             EcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee----eeeeeee
Q 005342          553 LLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL----CSKFLHS  628 (701)
Q Consensus       553 ~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~----~~~~l~~  628 (701)
                      +++. .+++++.||.|++||+++.+.+..+.+|...+..  +++++.+|++|+.||.|++||+..+...    ....+..
T Consensus       186 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (293)
T d1p22a2         186 YRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT  262 (293)
T ss_dssp             EETT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE
T ss_pred             CCCC-eEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEE
Confidence            7644 8999999999999999999999999999888765  5678899999999999999997653211    0122332


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  664 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd  664 (701)
                      + .+|.   +.|++++|+  +++|+++ .||+|+|||
T Consensus       263 ~-~~H~---~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         263 L-VEHS---GRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             E-CCCS---SCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             e-cCCC---CCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            2 3565   889999985  5678885 899999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.6e-27  Score=249.09  Aligned_cols=301  Identities=15%  Similarity=0.112  Sum_probs=202.8

Q ss_pred             EEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-
Q 005342          321 SLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-  394 (701)
Q Consensus       321 ~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-  394 (701)
                      ...++|.+.|.  +++++++     +.|++|+|||..+..........    .....|.           ..+  .|.. 
T Consensus         8 ~~~~~H~~~I~--~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~----~~~~~~~-----------~~~--~~~~~   68 (393)
T d1sq9a_           8 NAGKAHDADIF--SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKS----YSHFVHK-----------SGL--HHVDV   68 (393)
T ss_dssp             EESSCSSSCEE--EEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGE----EEEECCT-----------TCE--EEEEE
T ss_pred             ecCCcccCccE--EEEEeCCEEEEEECCCeEEEEECCCCCCCccccee----Eeeeecc-----------CCc--eEeee
Confidence            45589999999  9999998     89999999998766532210000    0000000           000  1111 


Q ss_pred             eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEee---cCCCCCCCCEEEEEEecCC-----CEEEEEECCCcE
Q 005342          395 SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLL---LPDNSFGGRVVRLIYSHSG-----DFLVALTQTATH  465 (701)
Q Consensus       395 V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~---~~~~~~~~~v~~l~~spdg-----~~l~s~s~dg~i  465 (701)
                      ...+..++ ++.++++++.||.|++|++.............   .....+...+..++|.+++     .++++++.||.+
T Consensus        69 ~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i  148 (393)
T d1sq9a_          69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT  148 (393)
T ss_dssp             EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE
T ss_pred             EeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcE
Confidence            22222222 34578899999999999986443332222111   1122345678888888764     578999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEE-eecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEe-
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVM-TNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF-  541 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~-  541 (701)
                      .+|++..............      ....... .......+...+.+++|+ +.++++|+ ||.|++||+.+++.+..+ 
T Consensus       149 ~vw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~  222 (393)
T d1sq9a_         149 YIWKFHPFADESNSLTLNW------SPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFE  222 (393)
T ss_dssp             EEEEEESSSSHHHHTTTCC------CCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEeecCCcccceeeeee------ccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccc
Confidence            9999854432100000000      0000000 000112456678999999 77999999 999999999999877654 


Q ss_pred             -----cCCCCCeEEEEEcCCC-eEEEEeCCCc---EEEEeCCCCceEEeec-------------CCCCCeEEEEEecCCC
Q 005342          542 -----ANPPPIATYFILLPQD-LFAFGFDDSS---ILVHCPCTKKTKAKLK-------------GHQNRITCLAYSLSLN  599 (701)
Q Consensus       542 -----~~~~~~i~~l~~spdg-~l~~gs~dg~---I~iwd~~~~~~~~~l~-------------~h~~~V~~v~~spdg~  599 (701)
                           .+|..+|++++|+|+| +|++|+.|++   |++||+.+++.+..+.             ||.+.|++++|+||++
T Consensus       223 ~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~  302 (393)
T d1sq9a_         223 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE  302 (393)
T ss_dssp             CCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred             cccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC
Confidence                 4678899999999999 9999999974   8999999998877664             7999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeE----EEEEcCCCCEEEEE
Q 005342          600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN----HIQFHPDQIHLLSI  655 (701)
Q Consensus       600 ~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~----~v~~spdg~~l~sg  655 (701)
                      +|+|||.|++|++||+++|+.+  ..+.    +|.   ..|.    .++|+|++..++++
T Consensus       303 ~l~S~s~D~~v~vWd~~~g~~~--~~l~----gH~---~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         303 TLCSAGWDGKLRFWDVKTKERI--TTLN----MHC---DDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             EEEEEETTSEEEEEETTTTEEE--EEEE----CCG---GGCSSGGGCCCBCTTSCBCSSC
T ss_pred             eeEEECCCCEEEEEECCCCCEE--EEEC----CcC---CcccCCccEEEECCCCCEEEEc
Confidence            9999999999999999998643  2333    554   4443    46777777766543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.9e-27  Score=249.55  Aligned_cols=270  Identities=10%  Similarity=0.102  Sum_probs=185.4

Q ss_pred             ccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEE---ec----CCCEEE
Q 005342          387 SCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIY---SH----SGDFLV  457 (701)
Q Consensus       387 ~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~---sp----dg~~l~  457 (701)
                      .+.++|.. |.++++++  ++++||+.|++|++||.......... ....  ...|...+..+..   .+    ++..++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS--HFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE--EECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEe--eeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            34579999 99999875  69999999999999997632211111 0111  0123333332222   11    234677


Q ss_pred             EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-------CCEEEEEe-CCeEEE
Q 005342          458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSAS-GGKISI  529 (701)
Q Consensus       458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-------~~~l~s~s-dg~I~i  529 (701)
                      +++.||.+++|++..........       ....   ...   ....+...+..+++.       +.++++++ ||.+++
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~-------~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v  150 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVI-------FEKL---DLL---DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI  150 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEE-------EEEE---CCS---CTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred             EEeCCCcEEEEEccCCCceeeee-------cccc---cee---eeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence            89999999999874432100000       0000   000   001233456666665       45788888 999999


Q ss_pred             EeCCCCc---------------E---EEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEee------cCC
Q 005342          530 FSLETFQ---------------T---LATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL------KGH  585 (701)
Q Consensus       530 wd~~~~~---------------~---~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l------~~h  585 (701)
                      ||+....               .   ......+...+.+++|+|++++++|+.||+|++||+.+++.+..+      .+|
T Consensus       151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h  230 (393)
T d1sq9a_         151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN  230 (393)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred             EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccc
Confidence            9974221               0   111123455689999999998899999999999999998876544      468


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCe---EEEEECCCCeeeeeeee-------eeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342          586 QNRITCLAYSLSLNVLVSSGADAQ---LCVWDAVGWKKLCSKFL-------HSFQTGLVPETTIVNHIQFHPDQIHLLSI  655 (701)
Q Consensus       586 ~~~V~~v~~spdg~~l~s~s~D~~---I~vwd~~~g~~~~~~~l-------~~~~~~~~~~~~~v~~v~~spdg~~l~sg  655 (701)
                      ..+|++++|+|||++|++|+.|++   |++||+++++.......       .....+|.   ..|++++|+||+++|++|
T Consensus       231 ~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~---~~V~~l~fspd~~~l~S~  307 (393)
T d1sq9a_         231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLCSA  307 (393)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEEECSSSSEEEEE
T ss_pred             cceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeeccc---CceeeeccCCCCCeeEEE
Confidence            999999999999999999999874   99999999865432111       00123555   899999999999999996


Q ss_pred             -ecCeEEEEECCCCceeeeeee
Q 005342          656 -HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       656 -~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                       .|++|+|||+.+|++++++.+
T Consensus       308 s~D~~v~vWd~~~g~~~~~l~g  329 (393)
T d1sq9a_         308 GWDGKLRFWDVKTKERITTLNM  329 (393)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEEECC
Confidence             799999999999999999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.7e-26  Score=238.60  Aligned_cols=256  Identities=13%  Similarity=0.104  Sum_probs=189.1

Q ss_pred             eEEEEEcCCCCeEEEEcCCC-cEEEEeccccCCCCceeEeecCCCCC-CCCEEEEEEec--CCCEEEEEECCCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKSLE-KSVNLKLQLINEPSECRTLLLPDNSF-GGRVVRLIYSH--SGDFLVALTQTATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~-~v~iw~~~~~~~~~~~~~l~~~~~~~-~~~v~~l~~sp--dg~~l~s~s~dg~i~vwd~  470 (701)
                      +.+++|+|+|+.|+.++.+. .++.|+....  ......   ...+| ...|++++|+|  +|.+|++|+.||+|++||+
T Consensus        20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~--~~~~~~---~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS--KVPPVV---QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             CCCCEEETTTTEEEEEETTEEEEEECCSSCC--SSCSEE---EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEEeCCCC--CccceE---EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee
Confidence            55789999999999887654 3455654321  111111   12344 56799999998  5689999999999999988


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe---CCeEEEEeCCCCcEEEEecCCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPP  545 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s---dg~I~iwd~~~~~~~~~~~~~~  545 (701)
                      .....     ....     +   +.... .+ ..|.++|.+++|+  +.++++++   ++.+++|+..+++.+..+.+|.
T Consensus        95 ~~~~~-----~~~~-----~---~~~~~-~~-~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  159 (325)
T d1pgua1          95 TFDKE-----SNSV-----E---VNVKS-EF-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS  159 (325)
T ss_dssp             EEEGG-----GTEE-----E---EEEEE-EE-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred             cCCcc-----eeee-----e---ccccc-cc-ccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence            44321     0000     0   00000 01 2577899999999  78877665   4789999999999999999999


Q ss_pred             CCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEee---cCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCe
Q 005342          546 PIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       546 ~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l---~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~  619 (701)
                      ..|.+++|+|++  .+++++.|+.+++||..+++....+   .+|...|++++|+|+ +.++++++.|+.|++||+++++
T Consensus       160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE  239 (325)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred             cccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc
Confidence            999999999998  6788999999999999888766554   356778999999996 6899999999999999999975


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ..     ..+..+..+....+.++.| |||++|+++ .|++|+|||++++++++.+..
T Consensus       240 ~~-----~~l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~  291 (325)
T d1pgua1         240 FL-----KYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTL  291 (325)
T ss_dssp             EE-----EECCBTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cc-----ccccccccccccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEe
Confidence            32     2233233111133344444 688899885 899999999999999998875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.9e-26  Score=233.57  Aligned_cols=287  Identities=13%  Similarity=0.100  Sum_probs=202.2

Q ss_pred             ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342          318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN  390 (701)
Q Consensus       318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~  390 (701)
                      ++++.+++|.+.|+  +++|+|+       +.|++|+|||+.++.....+                          ....
T Consensus         2 ~~v~~~~~h~d~I~--~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~--------------------------~~~~   53 (342)
T d1yfqa_           2 QIVQIEQAPKDYIS--DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL--------------------------LQSL   53 (342)
T ss_dssp             EEEECSSCCSSCEE--EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE--------------------------EEEE
T ss_pred             CeEEcCCCCCCCEE--EEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE--------------------------EEec
Confidence            35666789999999  9999999       88999999999877554331                          0113


Q ss_pred             CCCc-eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342          391 DNNQ-SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  468 (701)
Q Consensus       391 ~h~~-V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  468 (701)
                      +|.. |.+++|+|++ .+|++|+.|+.|++|+..    .+......  ...+........+.+++..+++++.++.+++|
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  127 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI----GSPSFQAL--TNNEANLGICRICKYGDDKLIAASWDGLIEVI  127 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS----SSSSEEEC--BSCCCCSCEEEEEEETTTEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeecc----cccccccc--ccccccccccccccccccccccccccccccee
Confidence            6888 9999999874 589999999999999997    33322211  12234555666778888999999999999999


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEE---EEec
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL---ATFA  542 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~---~~~~  542 (701)
                      |++....                 ...................+.+.  +..+++++ |+.|++||+.+....   ....
T Consensus       128 d~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  190 (342)
T d1yfqa_         128 DPRNYGD-----------------GVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES  190 (342)
T ss_dssp             CHHHHTT-----------------BCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEEC
T ss_pred             ecccccc-----------------ceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeec
Confidence            8743211                 00111100000111223333444  77888888 999999999776532   2233


Q ss_pred             CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE---------------EeecCCCCCeEEEEEecCCCEEEEEe
Q 005342          543 NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK---------------AKLKGHQNRITCLAYSLSLNVLVSSG  605 (701)
Q Consensus       543 ~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~---------------~~l~~h~~~V~~v~~spdg~~l~s~s  605 (701)
                      .....+.+..+.+..  .+++++.||.+.+|+.......               ....+|...|++++|+|++++||||+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~  270 (342)
T d1yfqa_         191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG  270 (342)
T ss_dssp             SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred             ccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEEC
Confidence            345556666666654  9999999999999987643211               11234667899999999999999999


Q ss_pred             CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       606 ~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      .||+|++||+.+++++     ..+..+     ..+..++|+|+|++++++ .|+++++|..
T Consensus       271 ~Dg~v~vWD~~~~~~l-----~~~~~~-----~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         271 SDGIISCWNLQTRKKI-----KNFAKF-----NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             TTSCEEEEETTTTEEE-----EECCCC-----SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             CCCEEEEEECCCCcEE-----EEecCC-----CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            9999999999997533     223323     445678889999999985 7888888866

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.1e-25  Score=226.60  Aligned_cols=272  Identities=10%  Similarity=0.039  Sum_probs=189.5

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcE
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATH  465 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i  465 (701)
                      .+++|.. |++++|+|++++||+|+.||+|++||+........+..    ..+|...|.+++|+|++ .++++|+.||.+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~----~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ----SLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEE----EEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEE----ecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            3568989 99999999999999999999999999974222222222    12488999999999975 578999999999


Q ss_pred             EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEE----
Q 005342          466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL----  538 (701)
Q Consensus       466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~----  538 (701)
                      ++|++...                     ..... ....+........+.  +..+++++ ++.+++||++++...    
T Consensus        82 ~~w~~~~~---------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~  139 (342)
T d1yfqa_          82 LKVDLIGS---------------------PSFQA-LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             EEECSSSS---------------------SSEEE-CBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             eeeecccc---------------------ccccc-ccccccccccccccccccccccccccccccceeeccccccceeee
Confidence            99976332                     21111 111222233333333  77888888 999999998654422    


Q ss_pred             EEecCC--CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE---eecCCCCCeEEEEEec-CCCEEEEEeCCCeEE
Q 005342          539 ATFANP--PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA---KLKGHQNRITCLAYSL-SLNVLVSSGADAQLC  611 (701)
Q Consensus       539 ~~~~~~--~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~---~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~  611 (701)
                      .....+  ........+.+++ .+++++.|+.|++||+.......   ....+...+.+..+.| ++..+++++.||.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  219 (342)
T d1yfqa_         140 KNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA  219 (342)
T ss_dssp             EESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEE
T ss_pred             cccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEE
Confidence            222222  2334566778888 99999999999999998765432   2233445566666665 678999999999999


Q ss_pred             EEECCCCeeee----eeeee--eccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEE
Q 005342          612 VWDAVGWKKLC----SKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIM  681 (701)
Q Consensus       612 vwd~~~g~~~~----~~~l~--~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~  681 (701)
                      +|+........    .....  .....+..+...|++++|+|++++|++| .||.|++||+.+++.++++..   ++.++
T Consensus       220 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~  299 (342)
T d1yfqa_         220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK  299 (342)
T ss_dssp             EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEE
T ss_pred             EEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEE
Confidence            99987542111    00111  0111222233789999999999999996 899999999999999998865   55666


Q ss_pred             EEee
Q 005342          682 FVQI  685 (701)
Q Consensus       682 fs~~  685 (701)
                      |+|.
T Consensus       300 ~s~~  303 (342)
T d1yfqa_         300 IACS  303 (342)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            6654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=5.5e-25  Score=228.95  Aligned_cols=266  Identities=10%  Similarity=0.010  Sum_probs=197.1

Q ss_pred             EEEEcc-C------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCC
Q 005342          334 CINVMP-N------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDAD  405 (701)
Q Consensus       334 ~l~fsp-d------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~  405 (701)
                      .-.||| |      ..++.|++||+.++...+.                               +|.. |.+++|+|||+
T Consensus         7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~-------------------------------~~~~~v~~~~~spDg~   55 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV-------------------------------PEPLRIRYVRRGGDTK   55 (360)
T ss_dssp             EEEEEECGGGCEEEEETTEEEEECTTSSBEEEC-------------------------------SCCSCEEEEEECSSSE
T ss_pred             cccccCCCCCEEEEEECCeEEEEECCCCcEEEc-------------------------------cCCCCEEEEEECCCCC
Confidence            345888 6      5678999999988876654                               5666 99999999999


Q ss_pred             eEEEEcCCC--cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccc
Q 005342          406 SAVCAKSLE--KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN  483 (701)
Q Consensus       406 ~l~s~s~d~--~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~  483 (701)
                      .|++++.+.  .|++||..    +++...+.    .|...|.+++|+|||++|++++.++.+.+|+.             
T Consensus        56 ~l~~~~~~~g~~v~v~d~~----~~~~~~~~----~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~-------------  114 (360)
T d1k32a3          56 VAFIHGTREGDFLGIYDYR----TGKAEKFE----ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL-------------  114 (360)
T ss_dssp             EEEEEEETTEEEEEEEETT----TCCEEECC----CCCCSEEEEEECTTSSEEEEEETTSEEEEEET-------------
T ss_pred             EEEEEEcCCCCEEEEEECC----CCcEEEee----CCCceEEeeeecccccccceeccccccccccc-------------
Confidence            998877553  78999997    66555532    47899999999999999999999999999965             


Q ss_pred             eeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-----------CCeEEEEeCCCCcEEEEecCCCCCeEE
Q 005342          484 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-----------GGKISIFSLETFQTLATFANPPPIATY  550 (701)
Q Consensus       484 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-----------dg~I~iwd~~~~~~~~~~~~~~~~i~~  550 (701)
                              .++..... + ..|...+.+++|+  |++|+.+.           ++.+++||+.+++.... ..+...+..
T Consensus       115 --------~~~~~~~~-~-~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~  183 (360)
T d1k32a3         115 --------ETGKPTVI-E-RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYA  183 (360)
T ss_dssp             --------TTCCEEEE-E-ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEE
T ss_pred             --------cccceeee-e-ecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee-ccccccccc
Confidence                    44443321 1 3567788899999  88887543           34689999988766544 446778899


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEeCCCCce-------EEeecC------------------------------------CC
Q 005342          551 FILLPQD-LFAFGFDDSSILVHCPCTKKT-------KAKLKG------------------------------------HQ  586 (701)
Q Consensus       551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~-------~~~l~~------------------------------------h~  586 (701)
                      ++|+||| .|++++.++.+.+||......       ...+..                                    ..
T Consensus       184 ~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (360)
T d1k32a3         184 PAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP  263 (360)
T ss_dssp             EEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC
T ss_pred             ccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCc
Confidence            9999999 999999999999998654321       111100                                    01


Q ss_pred             CCeEEEEEecCC-------------CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342          587 NRITCLAYSLSL-------------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  653 (701)
Q Consensus       587 ~~V~~v~~spdg-------------~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~  653 (701)
                      +....+...+++             .++++++.++.|++||+.+++.   ..+.          +.|.+++|||||++|+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~----------~~v~~~~~SpDG~~l~  330 (360)
T d1k32a3         264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV---TEVK----------NNLTDLRLSADRKTVM  330 (360)
T ss_dssp             BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE---EEEE----------EEEEEEEECTTSCEEE
T ss_pred             CceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE---EEec----------CCcCEEEECCCCCEEE
Confidence            122233333322             2345566788999999998642   2222          6689999999999999


Q ss_pred             EE-ecCeEEEEECCCCceeeeee
Q 005342          654 SI-HEGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       654 sg-~Dg~I~iwd~~~g~~~~~l~  675 (701)
                      ++ .||.|++||+.+|+...++.
T Consensus       331 ~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         331 VRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             EEETTSCEEEEESSCTTSCEECC
T ss_pred             EEECCCeEEEEECCCCCcceEEE
Confidence            96 79999999999998777654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.1e-24  Score=212.57  Aligned_cols=243  Identities=16%  Similarity=0.164  Sum_probs=193.9

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGD  381 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D  381 (701)
                      +.|++||+.+++++.++.+|.+.|.  +++|+++     +.|++|++|++..+......          ..+        
T Consensus        35 g~i~vWd~~~~~~~~~l~~H~~~V~--~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~----------~~~--------   94 (293)
T d1p22a2          35 NTIKIWDKNTLECKRILTGHTGSVL--CLQYDERVIITGSSDSTVRVWDVNTGEMLNTL----------IHH--------   94 (293)
T ss_dssp             SCEEEEESSSCCEEEEECCCSSCEE--EEECCSSEEEEEETTSCEEEEESSSCCEEEEE----------CCC--------
T ss_pred             CeEEEEECCCCcEEEEEecCCCCEe--eeecccceeecccccccccccccccccccccc----------ccc--------
Confidence            8999999999999999999999999  9999888     89999999999988776651          111        


Q ss_pred             CCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC
Q 005342          382 DSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ  461 (701)
Q Consensus       382 ~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~  461 (701)
                                  ......+.+....++++..++.+.+|+.......    ........|...+.++.+.+  ..+++++.
T Consensus        95 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~~~s~  156 (293)
T d1p22a2          95 ------------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI----TLRRVLVGHRAAVNVVDFDD--KYIVSASG  156 (293)
T ss_dssp             ------------CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC----EEEEEECCCSSCEEEEEEET--TEEEEEET
T ss_pred             ------------ccccccccccccceeecccccceeEeeccccccc----cccccccccccccccceecc--cccccccC
Confidence                        1123456667788999999999999998742221    11112234677887777664  56889999


Q ss_pred             CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEE
Q 005342          462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLAT  540 (701)
Q Consensus       462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~  540 (701)
                      |+.+++||.                     .+++.+.. + .++...+..+.+++..+++++ ||.|++||+++...+..
T Consensus       157 d~~i~~~d~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  213 (293)
T d1p22a2         157 DRTIKVWNT---------------------STCEFVRT-L-NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV  213 (293)
T ss_dssp             TSEEEEEET---------------------TTCCEEEE-E-ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCceeeecC---------------------CCCcEEEE-E-cccccccccccCCCCeEEEecCCCEEEEEecccceeeee
Confidence            999999965                     44554432 2 356778888888888899988 99999999999999999


Q ss_pred             ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC---------CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342          541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL  610 (701)
Q Consensus       541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~---------~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I  610 (701)
                      +.++...+..  +++++ ++++|+.||.|++||+.+         ...+..+.+|.+.|++++|  ++++|+|||.||+|
T Consensus       214 ~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i  289 (293)
T d1p22a2         214 LEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI  289 (293)
T ss_dssp             ECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred             ecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEE
Confidence            9888887765  56677 999999999999999753         3467888999999999998  46789999999999


Q ss_pred             EEEE
Q 005342          611 CVWD  614 (701)
Q Consensus       611 ~vwd  614 (701)
                      ++||
T Consensus       290 ~iWD  293 (293)
T d1p22a2         290 LIWD  293 (293)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.7e-24  Score=214.14  Aligned_cols=241  Identities=10%  Similarity=0.068  Sum_probs=188.2

Q ss_pred             cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .|.||.. |.+++|+|    |+||+.||+|++||+.    ++  .      ..|...|.++.+++++ .+++++.|++++
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~----~~--~------~~h~~~V~~~~~~~~~-~~~s~s~D~~v~   70 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSS----SM--H------QDHSNLIVSLDNSKAQ-EYSSISWDDTLK   70 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTT----EE--E------CCCCSCEEEEECCSTT-CCEEEETTTEEE
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECC----CC--C------CCCCCCEEEEEecCCC-eEEEEeeccccc
Confidence            4679999 99999998    9999999999999986    22  1      2488999999999766 479999999999


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCC
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANP  544 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~  544 (701)
                      +|++...                              .....+.+++++  +..++++.++.+.+|+..+++.+..+..+
T Consensus        71 ~w~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (287)
T d1pgua2          71 VNGITKH------------------------------EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN  120 (287)
T ss_dssp             ETTEEEE------------------------------ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             ccccccc------------------------------ccccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc
Confidence            9965210                              123356677777  44555555888999999999988887643


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCC-cEEEEeCCCCceEEeec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          545 PPIATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg-~I~iwd~~~~~~~~~l~-~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                       ..  ..+++|++ .+++++.++ .+++|++...+....+. .|.+.+++++|+|++.+|++|+.||.|++||+.++...
T Consensus       121 -~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         121 -SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             -SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             -ce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc
Confidence             33  34667778 777777765 79999998776665554 37789999999999999999999999999999997532


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCC----------CCEEEEE-ecCeEEEEECCC-Cceeeeeee----eeEEEEEee
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPD----------QIHLLSI-HEGQIDVYEAPT-LNHTSQVLL----ISHIMFVQI  685 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spd----------g~~l~sg-~Dg~I~iwd~~~-g~~~~~l~~----i~~~~fs~~  685 (701)
                      .    . ...+|.   ..|++++|+|+          +.++++| .|++|+|||+++ ++.+..+.+    |++++|+|.
T Consensus       198 ~----~-~~~~h~---~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~  269 (287)
T d1pgua2         198 T----S-RWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP  269 (287)
T ss_dssp             E----C-CSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred             c----c-cccccc---cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC
Confidence            1    1 233665   88999999875          4678886 799999999977 556666655    999999875


Q ss_pred             E
Q 005342          686 V  686 (701)
Q Consensus       686 ~  686 (701)
                      .
T Consensus       270 ~  270 (287)
T d1pgua2         270 S  270 (287)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.8e-24  Score=232.26  Aligned_cols=315  Identities=11%  Similarity=0.035  Sum_probs=215.8

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      ++|++||+.+++.+..+..|. .+.  .++||||       +.|+++++||+.+++.....                   
T Consensus        42 g~v~vwD~~t~~~~~~l~~g~-~~~--~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~-------------------   99 (426)
T d1hzua2          42 GQIALVDGDSKKIVKVIDTGY-AVH--ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA-------------------   99 (426)
T ss_dssp             TEEEEEETTTCSEEEEEECCS-SEE--EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE-------------------
T ss_pred             CEEEEEECCCCcEEEEEeCCC-Cee--EEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE-------------------
Confidence            899999999999999999875 478  9999999       78999999999999865541                   


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcCCCCeEEE-EcCCCcEEEEeccccCCCCceeEeecCC--------CCCCCCEEEEEE
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVC-AKSLEKSVNLKLQLINEPSECRTLLLPD--------NSFGGRVVRLIY  449 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s-~s~d~~v~iw~~~~~~~~~~~~~l~~~~--------~~~~~~v~~l~~  449 (701)
                           ......+|.+ +.+++|+|||+++++ +..++.+.+||..    .+.+.......        -.+......+..
T Consensus       100 -----~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  170 (426)
T d1hzua2         100 -----EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE----TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA  170 (426)
T ss_dssp             -----EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT----TCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred             -----EEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCC----ccceeEEeeccCCCccceeecCCCceeEEEE
Confidence                 0111235666 788999999998755 4588999999998    55444322100        012334455556


Q ss_pred             ecCCCEEEEEECC-CcEEEEecCCCCccccccccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEec--CCEEEEEe--
Q 005342          450 SHSGDFLVALTQT-ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALR--GSHLFSAS--  523 (701)
Q Consensus       450 spdg~~l~s~s~d-g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--  523 (701)
                      ++++..++....+ +.+.+++.                     .++. .....+  ++...+..++++  +++++++.  
T Consensus       171 s~d~~~~~~~~~~~~~i~~~~~---------------------~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~a~~~  227 (426)
T d1hzua2         171 SHEHPEFIVNVKETGKVLLVNY---------------------KDIDNLTVTSI--GAAPFLADGGWDSSHRYFMTAANN  227 (426)
T ss_dssp             CSSSSEEEEEETTTTEEEEEEC---------------------SSSSSCEEEEE--ECCSSEEEEEECTTSCEEEEEETT
T ss_pred             CCCCCEEEEecCCCCeEEEEEe---------------------ccccceeeEEe--ccCCccEeeeECCCCcEEEeeeec
Confidence            6666655544442 33333322                     2222 111111  356778899998  78777776  


Q ss_pred             CCeEEEEeCCCCcEEEEecCC--CCCeEEEEEcCCC----eEEEEeCCCcEEEEeCCC-------CceEEeecCCCCCeE
Q 005342          524 GGKISIFSLETFQTLATFANP--PPIATYFILLPQD----LFAFGFDDSSILVHCPCT-------KKTKAKLKGHQNRIT  590 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~--~~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~-------~~~~~~l~~h~~~V~  590 (701)
                      +..+.++|..+++.+......  ........+.+.+    ..+..+.|+.+.+|+...       ++....+.+|...+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~  307 (426)
T d1hzua2         228 SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL  307 (426)
T ss_dssp             CSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCC
T ss_pred             ccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCcee
Confidence            588999999999887776532  2222333333333    333445677888887654       467888999999999


Q ss_pred             EEEEecCCCEEEE-------EeCCCeEEEEECCCCeeeeee-eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE------e
Q 005342          591 CLAYSLSLNVLVS-------SGADAQLCVWDAVGWKKLCSK-FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI------H  656 (701)
Q Consensus       591 ~v~~spdg~~l~s-------~s~D~~I~vwd~~~g~~~~~~-~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg------~  656 (701)
                      .++|+||+++|++       ++.|++|+|||+++++..... ++... .++..+...|.+++|||||++++++      .
T Consensus       308 ~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~-~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~  386 (426)
T d1hzua2         308 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW-ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKND  386 (426)
T ss_dssp             CEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH-HCCCSSCCCEEEEEECSSSSEEEEEECCCTTS
T ss_pred             EEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchh-cccCCCCccEEEEEECCCCCEEEEEEecCCCC
Confidence            9999999999994       556889999999998643211 11100 1111122779999999999977542      3


Q ss_pred             cCeEEEEECCCCceeeeeee
Q 005342          657 EGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       657 Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ++.|+|||..|++..+.+.+
T Consensus       387 ~~~i~v~D~~T~k~~~~i~~  406 (426)
T d1hzua2         387 SSALVVVDDKTLKLKAVVKD  406 (426)
T ss_dssp             CCEEEEEETTTTEEEEEECC
T ss_pred             CCeEEEEECCCCeEEEEECC
Confidence            78899999999999988877

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=1.3e-20  Score=190.27  Aligned_cols=267  Identities=14%  Similarity=0.100  Sum_probs=197.6

Q ss_pred             EccCCCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeE-EEEcCCCc
Q 005342          337 VMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSA-VCAKSLEK  415 (701)
Q Consensus       337 fspds~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l-~s~s~d~~  415 (701)
                      |-.++.|++|.+||+.+++.+..+          +.                   ...+..++|+|||++| ++++.++.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i----------~~-------------------g~~p~~va~spdG~~l~v~~~~~~~   55 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATI----------PV-------------------GSNPMGAVISPDGTKVYVANAHSND   55 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEE----------EC-------------------SSSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEE----------EC-------------------CCCceEEEEeCCCCEEEEEECCCCE
Confidence            333467899999999999887763          11                   1126789999999987 57778899


Q ss_pred             EEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCC
Q 005342          416 SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSK  494 (701)
Q Consensus       416 v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~  494 (701)
                      |.+||+.    +++... .++   ....+..++|++++..+++++. ++.+.+|+.                     .++
T Consensus        56 i~v~d~~----t~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~  106 (301)
T d1l0qa2          56 VSIIDTA----TNNVIA-TVP---AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT---------------------TSN  106 (301)
T ss_dssp             EEEEETT----TTEEEE-EEE---CSSSEEEEEECTTSSEEEEEETTTTEEEEEET---------------------TTT
T ss_pred             EEEEECC----CCceee-eee---ccccccccccccccccccccccccceeeeccc---------------------ccc
Confidence            9999998    554433 111   2346789999999997766555 678888844                     555


Q ss_pred             eEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC-CCcE
Q 005342          495 LVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DSSI  568 (701)
Q Consensus       495 ~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~-dg~I  568 (701)
                      +.... +  .+...+.+++++  |..++.+.  ++.+.+|+..++.....+.. ...+..++++|++ .++++.. ++.+
T Consensus       107 ~~~~~-~--~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (301)
T d1l0qa2         107 TVAGT-V--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSI  182 (301)
T ss_dssp             EEEEE-E--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeee-c--cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEeeccccceeeeccccccc
Confidence            54432 2  234567788888  66665544  78999999999998888874 4567899999999 6665554 4678


Q ss_pred             EEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEE
Q 005342          569 LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF  645 (701)
Q Consensus       569 ~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s---~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~  645 (701)
                      .+|+....+....+..+ ..+..++|+++++.++.++   .+++|++||..+++...  .   +..+     ..+.+++|
T Consensus       183 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~--~---~~~~-----~~~~~va~  251 (301)
T d1l0qa2         183 SVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA--R---IPVG-----PDPAGIAV  251 (301)
T ss_dssp             EEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE--E---EECC-----SSEEEEEE
T ss_pred             ccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEE--E---EcCC-----CCEEEEEE
Confidence            88888877777776644 5578899999999776543   34789999999986432  2   2222     56799999


Q ss_pred             cCCCCEEE-EE-ecCeEEEEECCCCceeeeeee
Q 005342          646 HPDQIHLL-SI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       646 spdg~~l~-sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      +|||++|+ ++ .|++|++||+.+++++++++.
T Consensus       252 spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         252 TPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             eCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            99999875 45 689999999999999988863

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=9e-23  Score=218.92  Aligned_cols=300  Identities=12%  Similarity=0.076  Sum_probs=199.6

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS  379 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  379 (701)
                      ++|.+||..+++++..+..|. .+.  .++||||       +.|+++++||+.+++.....        .+         
T Consensus        42 g~v~v~D~~t~~v~~~~~~g~-~~~--~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~--------~i---------  101 (432)
T d1qksa2          42 GQIALIDGSTYEIKTVLDTGY-AVH--ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--------EI---------  101 (432)
T ss_dssp             TEEEEEETTTCCEEEEEECSS-CEE--EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--------EE---------
T ss_pred             CEEEEEECCCCcEEEEEeCCC-Cee--EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE--------EE---------
Confidence            899999999999999999874 588  9999999       78999999999988754330        00         


Q ss_pred             CCCCCCCccccCCCc-eEEEEEcCCCCeE-EEEcCCCcEEEEeccccCCCCceeEeecC--------CCCCCCCEEEEEE
Q 005342          380 GDDSNDSSCFNDNNQ-SRESTSLPDADSA-VCAKSLEKSVNLKLQLINEPSECRTLLLP--------DNSFGGRVVRLIY  449 (701)
Q Consensus       380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l-~s~s~d~~v~iw~~~~~~~~~~~~~l~~~--------~~~~~~~v~~l~~  449 (701)
                             ....+|.. +.+++|+|||++| ++++.++.+++||..    ++++......        ...+......+.+
T Consensus       102 -------~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~----t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (432)
T d1qksa2         102 -------KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE----TLEPKKIQSTRGMTYDEQEYHPEPRVAAILA  170 (432)
T ss_dssp             -------ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT----TCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             -------ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc----cccceeeeccCCccccceeccCCCceeEEEE
Confidence                   11124555 7788899999986 678889999999998    5554332100        0124567788999


Q ss_pred             ecCCCEEEEE-ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEE-eecccCCCCCCeEEEEec--CCEEEEEe--
Q 005342          450 SHSGDFLVAL-TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM-TNDIAADPKDSISCFALR--GSHLFSAS--  523 (701)
Q Consensus       450 spdg~~l~s~-s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~v~~l~~s--~~~l~s~s--  523 (701)
                      +|+|..++.. +.++.+.+|+.                     .+++.. ...+  .+...+.+++++  |+++++++  
T Consensus       171 s~dg~~~~vs~~~~~~i~~~d~---------------------~~~~~~~~~~i--~~g~~~~~~~~spdg~~~~va~~~  227 (432)
T d1qksa2         171 SHYRPEFIVNVKETGKILLVDY---------------------TDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANA  227 (432)
T ss_dssp             CSSSSEEEEEETTTTEEEEEET---------------------TCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGG
T ss_pred             CCCCCEEEEEEccCCeEEEEEc---------------------cCCCcceEEEE--cccCccccceECCCCCEEEEeccc
Confidence            9999876554 45789999965                     222211 1112  244567889999  88887777  


Q ss_pred             CCeEEEEeCCCCcEEEEecC-----CCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCceEEeecCCCCCeEEEEEe-
Q 005342          524 GGKISIFSLETFQTLATFAN-----PPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGHQNRITCLAYS-  595 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~-----~~~~i~~l~~spdg-~l~~gs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s-  595 (701)
                      ++.+.++|..+++.+..+..     +........+...+ ..++.. .++.|.+|+.....    ...|...+....++ 
T Consensus       228 ~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~  303 (432)
T d1qksa2         228 RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPAL  303 (432)
T ss_dssp             GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECS
T ss_pred             cceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc----ccccccEEEEEEEcC
Confidence            58999999988887766542     22233344444444 333332 36677777754432    11232333333333 


Q ss_pred             ----------------------------------cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeE
Q 005342          596 ----------------------------------LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN  641 (701)
Q Consensus       596 ----------------------------------pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~  641 (701)
                                                        ||++.+++++.|+.+++|++.++.     .   +..++    ..|.
T Consensus       304 ~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~-----~---l~~~~----~~v~  371 (432)
T d1qksa2         304 GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA-----G---ITEGQ----PRVV  371 (432)
T ss_dssp             CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH-----T---CCSSC----CEEE
T ss_pred             CCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEeccccccc-----c---cCCCC----CcEE
Confidence                                              455555555555555555554321     0   22233    6789


Q ss_pred             EEEEcCCCCEEEEE------ecCeEEEEECCCCceeeeeee
Q 005342          642 HIQFHPDQIHLLSI------HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       642 ~v~~spdg~~l~sg------~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      +++|||||++++++      .+|.|.|||..|+++.+.+.+
T Consensus       372 ~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~  412 (432)
T d1qksa2         372 QGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  412 (432)
T ss_dssp             EEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             EeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecC
Confidence            99999999988764      267899999999999888876

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=1.1e-22  Score=211.20  Aligned_cols=255  Identities=11%  Similarity=0.038  Sum_probs=183.0

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-------C--CCCeEEEEeccCCccccccccccCCCCCCCCCCccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------A--NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDA  377 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s--~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (701)
                      ++|.+||...++.++.  +|...|.  +++||||       +  .+..|++||+.++...+.                  
T Consensus        24 g~v~v~d~~~~~~~~~--~~~~~v~--~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~------------------   81 (360)
T d1k32a3          24 GQAFIQDVSGTYVLKV--PEPLRIR--YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF------------------   81 (360)
T ss_dssp             TEEEEECTTSSBEEEC--SCCSCEE--EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC------------------
T ss_pred             CeEEEEECCCCcEEEc--cCCCCEE--EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe------------------
Confidence            8899999999888764  6888999  9999999       2  234899999998876554                  


Q ss_pred             ccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342          378 SSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL  456 (701)
Q Consensus       378 s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l  456 (701)
                                  .+|.. |.+++|+|||++|++++.++.+++|++.    .+++....   ..+...+.+++|+|||++|
T Consensus        82 ------------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~spdg~~l  142 (360)
T d1k32a3          82 ------------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE----TGKPTVIE---RSREAMITDFTISDNSRFI  142 (360)
T ss_dssp             ------------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT----TCCEEEEE---ECSSSCCCCEEECTTSCEE
T ss_pred             ------------eCCCceEEeeeecccccccceecccccccccccc----ccceeeee---ecccccccchhhccceeee
Confidence                        25666 9999999999999999999999999998    55554422   2467788899999999999


Q ss_pred             EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC
Q 005342          457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE  533 (701)
Q Consensus       457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~  533 (701)
                      +.++.++....+           ......+.+|+..+++...  + ..+...+..++|+  |++|++++ ++.+.+||..
T Consensus       143 a~~~~~~~~~~~-----------~~~~~~~~v~d~~~~~~~~--~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         143 AYGFPLKHGETD-----------GYVMQAIHVYDMEGRKIFA--A-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             EEEEEECSSTTC-----------SCCEEEEEEEETTTTEEEE--C-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             eeecccccccee-----------eccccceeeeccccCceee--e-cccccccccccccCCCCEEEEEeCCCceEccccc
Confidence            876543211000           0001113344666666543  2 2456778888999  88999988 8999999865


Q ss_pred             CCcE-------EEEec------------------------------------CCCCCeEEEEEcCCC-------------
Q 005342          534 TFQT-------LATFA------------------------------------NPPPIATYFILLPQD-------------  557 (701)
Q Consensus       534 ~~~~-------~~~~~------------------------------------~~~~~i~~l~~spdg-------------  557 (701)
                      ....       ...+.                                    ........+...+++             
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (360)
T d1k32a3         209 VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA  288 (360)
T ss_dssp             SSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHH
T ss_pred             ccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCe
Confidence            4321       11111                                    011122334433333             


Q ss_pred             -eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          558 -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       558 -~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                       ++++++.++.|++||+.+++..    .|.+.|.+++|||||++|++++.||+|++||+++++.
T Consensus       289 ~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         289 AYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             HHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             eEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence             3455667889999999887653    2445699999999999999999999999999999763

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=6.3e-21  Score=204.23  Aligned_cols=298  Identities=11%  Similarity=0.050  Sum_probs=195.6

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK  420 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~  420 (701)
                      +.|++|+|||+.+++.+..+          +                   .|..+..++|||||+++++++.|+++++||
T Consensus        39 ~~dg~v~vwD~~t~~~~~~l----------~-------------------~g~~~~~vafSPDGk~l~~~~~d~~v~vwd   89 (426)
T d1hzua2          39 RDAGQIALVDGDSKKIVKVI----------D-------------------TGYAVHISRMSASGRYLLVIGRDARIDMID   89 (426)
T ss_dssp             TTTTEEEEEETTTCSEEEEE----------E-------------------CCSSEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             cCCCEEEEEECCCCcEEEEE----------e-------------------CCCCeeEEEECCCCCEEEEEeCCCCEEEEE
Confidence            56999999999999988873          2                   333488999999999999999999999999


Q ss_pred             ccccCCCCceeEe-ec-CCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEE
Q 005342          421 LQLINEPSECRTL-LL-PDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM  497 (701)
Q Consensus       421 ~~~~~~~~~~~~l-~~-~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~  497 (701)
                      +.    +++.... .+ ...+|.+.+.+++|+|||+++++++ .++.+.+||..+....          ..+........
T Consensus        90 ~~----t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~----------~~~~~~~~~~~  155 (426)
T d1hzua2          90 LW----AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK----------QIVSTRGMTVD  155 (426)
T ss_dssp             TT----SSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE----------EEEECCEECSS
T ss_pred             cc----CCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcccee----------EEeeccCCCcc
Confidence            98    4543221 11 1223555667778889999876655 6899999977554320          00000000000


Q ss_pred             eecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEE-EEecCCCCCeEEEEEcCCC-eEEE-EeCCCcEEE
Q 005342          498 TNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD-LFAF-GFDDSSILV  570 (701)
Q Consensus       498 ~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~-~~~~~~~~~i~~l~~spdg-~l~~-gs~dg~I~i  570 (701)
                      ...+  .+......+..+  +..++...  .+.+.+++...+... ....++...+..++++|++ ++++ +..+..+.+
T Consensus       156 ~~~~--~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~  233 (426)
T d1hzua2         156 TQTY--HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAV  233 (426)
T ss_dssp             SCCE--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEE
T ss_pred             ceee--cCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceee
Confidence            0000  133445555666  55655554  477888877665422 2233467788999999999 5554 456668999


Q ss_pred             EeCCCCceEEeecCC--CCCeEEEEEecCCC-EE--EEEeCCCeEEEEECCCCeee--eeeeeeeccCCCCCCCCCeEEE
Q 005342          571 HCPCTKKTKAKLKGH--QNRITCLAYSLSLN-VL--VSSGADAQLCVWDAVGWKKL--CSKFLHSFQTGLVPETTIVNHI  643 (701)
Q Consensus       571 wd~~~~~~~~~l~~h--~~~V~~v~~spdg~-~l--~s~s~D~~I~vwd~~~g~~~--~~~~l~~~~~~~~~~~~~v~~v  643 (701)
                      ++..+++.+......  ........+.+++. .+  ++.+.|+.+.+|+.......  ..+....+. +|.   ..+..+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~-g~~---~~v~~v  309 (426)
T d1hzua2         234 IDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQG---GGSLFI  309 (426)
T ss_dssp             EETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEE-CSS---SCCCCE
T ss_pred             eecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEe-cCC---CceeEE
Confidence            999999887766532  22333444444333 22  23456889999987653110  001222222 555   789999


Q ss_pred             EEcCCCCEEEE-------E-ecCeEEEEECCCCceeeeeee-------------eeEEEEEeeEE
Q 005342          644 QFHPDQIHLLS-------I-HEGQIDVYEAPTLNHTSQVLL-------------ISHIMFVQIVV  687 (701)
Q Consensus       644 ~~spdg~~l~s-------g-~Dg~I~iwd~~~g~~~~~l~~-------------i~~~~fs~~~~  687 (701)
                      +|+|||++|++       + .|++|+|||+.+++...++..             +.+++|||+..
T Consensus       310 ~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk  374 (426)
T d1hzua2         310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD  374 (426)
T ss_dssp             ECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred             EcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCC
Confidence            99999999995       2 478999999999987766531             88899999854

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=1.2e-18  Score=175.60  Aligned_cols=249  Identities=13%  Similarity=0.084  Sum_probs=189.8

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS  378 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  378 (701)
                      ++|.+||.++++.+..+.... .+.  .++|+||        +.++.|++||+.+++.+..+          +       
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g~-~p~--~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~----------~-------   71 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVGS-NPM--GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV----------P-------   71 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSS-SEE--EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE----------E-------
T ss_pred             CEEEEEECCCCeEEEEEECCC-Cce--EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee----------e-------
Confidence            789999999999999987653 467  8999999        67899999999999887762          2       


Q ss_pred             cCCCCCCCccccCCCceEEEEEcCCCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE
Q 005342          379 SGDDSNDSSCFNDNNQSRESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV  457 (701)
Q Consensus       379 ~~D~~~~~~~l~~h~~V~~l~~spdg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~  457 (701)
                                  .|..+..++|++++..++ ++..++.+.+|+..    .++.....    .+.....++.|+|||..++
T Consensus        72 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~dg~~~~  131 (301)
T d1l0qa2          72 ------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT----SNTVAGTV----KTGKSPLGLALSPDGKKLY  131 (301)
T ss_dssp             ------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT----TTEEEEEE----ECSSSEEEEEECTTSSEEE
T ss_pred             ------------ccccccccccccccccccccccccceeeecccc----cceeeeec----cccccceEEEeecCCCeee
Confidence                        233367899999998655 55677889999997    55433311    1356788999999999876


Q ss_pred             EEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeC
Q 005342          458 ALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSL  532 (701)
Q Consensus       458 s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~  532 (701)
                      .++. ++.+.+|+.                     .++..... +  .+...+..++++  +..+++++  ++.+.+|+.
T Consensus       132 ~~~~~~~~~~~~~~---------------------~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (301)
T d1l0qa2         132 VTNNGDKTVSVINT---------------------VTKAVINT-V--SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (301)
T ss_dssp             EEETTTTEEEEEET---------------------TTTEEEEE-E--ECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             eeeccccceeeeec---------------------cccceeee-c--ccCCCceEEEeeccccceeeecccccccccccc
Confidence            6555 778888854                     45554432 1  234567788888  67777666  478889998


Q ss_pred             CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEE-EEEeCC
Q 005342          533 ETFQTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGAD  607 (701)
Q Consensus       533 ~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs---~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l-~s~s~D  607 (701)
                      ...+...... ....+..+++++++ .++++.   .++.|++||..+++.+..+..+ ..+.+++|+|||++| ++++.|
T Consensus       188 ~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~  265 (301)
T d1l0qa2         188 VTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFC  265 (301)
T ss_dssp             TTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTT
T ss_pred             cceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCC
Confidence            8877777766 34567889999999 554443   3468999999999998888754 568999999999976 678889


Q ss_pred             CeEEEEECCCCeee
Q 005342          608 AQLCVWDAVGWKKL  621 (701)
Q Consensus       608 ~~I~vwd~~~g~~~  621 (701)
                      ++|++||+++++.+
T Consensus       266 ~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         266 NTVSVIDTATNTIT  279 (301)
T ss_dssp             TEEEEEETTTTEEE
T ss_pred             CeEEEEECCCCeEE
Confidence            99999999998644

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.9e-19  Score=184.50  Aligned_cols=279  Identities=13%  Similarity=0.057  Sum_probs=190.7

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeE-EEEcCCCcEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSA-VCAKSLEKSVN  418 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l-~s~s~d~~v~i  418 (701)
                      +.|++|++||+++++.+..+          +.+                 .+.. +..++|+|||+++ ++++.++.|.+
T Consensus         8 ~~d~~v~v~D~~s~~~~~~i----------~~~-----------------~~~~~~~~i~~spDg~~l~v~~~~~~~v~v   60 (337)
T d1pbyb_           8 ARPDKLVVIDTEKMAVDKVI----------TIA-----------------DAGPTPMVPMVAPGGRIAYATVNKSESLVK   60 (337)
T ss_dssp             ETTTEEEEEETTTTEEEEEE----------ECT-----------------TCTTCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEEE----------ECC-----------------CCCCCccEEEECCCCCEEEEEECCCCeEEE
Confidence            35899999999999887762          221                 2223 6679999999987 56778999999


Q ss_pred             EeccccCCCCceeE-eecCC-CCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeE
Q 005342          419 LKLQLINEPSECRT-LLLPD-NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV  496 (701)
Q Consensus       419 w~~~~~~~~~~~~~-l~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~  496 (701)
                      ||+.    +++... +.... ..+...+..++|+||++++++++.+.....|....         ....+.+||..++..
T Consensus        61 ~D~~----t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~  127 (337)
T d1pbyb_          61 IDLV----TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV---------QPTRVALYDAETLSR  127 (337)
T ss_dssp             EETT----TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE---------CCCEEEEEETTTTEE
T ss_pred             EECC----CCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccc---------cccceeeccccCCeE
Confidence            9998    555433 22211 11123455789999999998887654444432211         112245567788776


Q ss_pred             EeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-----------------
Q 005342          497 MTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-----------------  557 (701)
Q Consensus       497 ~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-----------------  557 (701)
                      ... +  .+...+..++++  |+++++++ +.+.+||..+++....+..+... ....++|++                 
T Consensus       128 ~~~-~--~~~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (337)
T d1pbyb_         128 RKA-F--EAPRQITMLAWARDGSKLYGLG-RDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPF  202 (337)
T ss_dssp             EEE-E--ECCSSCCCEEECTTSSCEEEES-SSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEE
T ss_pred             EEe-c--cccCCceEEEEcCCCCEEEEEc-CCcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeee
Confidence            543 2  234567788998  77887776 44778999999888777533211 111112211                 


Q ss_pred             --------eEEEEeCCCcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342          558 --------LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  628 (701)
Q Consensus       558 --------~l~~gs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~  628 (701)
                              ....+..++.+.+||..++..... +..+...+..++++|++.+++++  ++.|++||+.+++....  +. 
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~--~~-  277 (337)
T d1pbyb_         203 YTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR--VP-  277 (337)
T ss_dssp             EEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE--EE-
T ss_pred             eeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEE--Ec-
Confidence                    111223344689999988876543 44577788899999999988765  47999999999864432  22 


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                        .+     ..+.+++|+|||++|+++ .|++|+|||..+++.+++++.
T Consensus       278 --~~-----~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         278 --LP-----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             --CS-----SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             --CC-----CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence              12     567899999999999987 899999999999999998864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=7.3e-20  Score=195.95  Aligned_cols=298  Identities=10%  Similarity=-0.010  Sum_probs=183.8

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK  420 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~  420 (701)
                      +.|++|.|||..+++++..+          +                   .|..+..++|||||+++++++.|+.+.+||
T Consensus        39 ~d~g~v~v~D~~t~~v~~~~----------~-------------------~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d   89 (432)
T d1qksa2          39 RDAGQIALIDGSTYEIKTVL----------D-------------------TGYAVHISRLSASGRYLFVIGRDGKVNMID   89 (432)
T ss_dssp             TTTTEEEEEETTTCCEEEEE----------E-------------------CSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             cCCCEEEEEECCCCcEEEEE----------e-------------------CCCCeeEEEECCCCCEEEEEcCCCCEEEEE
Confidence            45899999999999998883          2                   233388999999999999999999999999


Q ss_pred             ccccCCCCceeEe-ecC-CCCCCCCEEEEEEecCCCEE-EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEE
Q 005342          421 LQLINEPSECRTL-LLP-DNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM  497 (701)
Q Consensus       421 ~~~~~~~~~~~~l-~~~-~~~~~~~v~~l~~spdg~~l-~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~  497 (701)
                      +.    +++.... .++ ...|.+.+.+..|+|||+++ ++++.++.+.+||..+....          ..+........
T Consensus        90 ~~----t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~----------~~~~~~~~~~~  155 (432)
T d1qksa2          90 LW----MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK----------KIQSTRGMTYD  155 (432)
T ss_dssp             TT----SSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE----------EEEECCEECTT
T ss_pred             ee----CCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccce----------eeeccCCcccc
Confidence            97    3332111 111 12344556666788899986 56777999999987554320          00000000000


Q ss_pred             eecccCCCCCCeEEEEec--CCEEEE-Ee-CCeEEEEeCCCCcEEE--EecCCCCCeEEEEEcCCC-eEEEEeC-CCcEE
Q 005342          498 TNDIAADPKDSISCFALR--GSHLFS-AS-GGKISIFSLETFQTLA--TFANPPPIATYFILLPQD-LFAFGFD-DSSIL  569 (701)
Q Consensus       498 ~~~~~~~~~~~v~~l~~s--~~~l~s-~s-dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~spdg-~l~~gs~-dg~I~  569 (701)
                      .  ....+......+.++  |..++. .. ++.|.+||..+++...  .+. +...+..++++||| ++++++. ++.+.
T Consensus       156 ~--~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~-~g~~~~~~~~spdg~~~~va~~~~~~v~  232 (432)
T d1qksa2         156 E--QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLV  232 (432)
T ss_dssp             T--CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred             c--eeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc-ccCccccceECCCCCEEEEeccccceEE
Confidence            0  001244566777888  666554 44 6999999998876443  343 45678899999999 6655554 55899


Q ss_pred             EEeCCCCceEEeecC-----CCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeee-----eeeeeeeccCC------
Q 005342          570 VHCPCTKKTKAKLKG-----HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKL-----CSKFLHSFQTG------  632 (701)
Q Consensus       570 iwd~~~~~~~~~l~~-----h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~g~~~-----~~~~l~~~~~~------  632 (701)
                      ++|..+++.+..+..     |........+.+.+...++.. .|+.|.+|+.......     ....+. .+.+      
T Consensus       233 v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~-~~~g~~~~~~  311 (432)
T d1qksa2         233 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP-ALGGGSLFIK  311 (432)
T ss_dssp             EEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEE
T ss_pred             EeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEE-cCCCCeEEEE
Confidence            999999888766542     334445555544555555443 4889999987653210     001111 0000      


Q ss_pred             -CC------------CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-eeEEEEEeeE
Q 005342          633 -LV------------PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-ISHIMFVQIV  686 (701)
Q Consensus       633 -~~------------~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-i~~~~fs~~~  686 (701)
                       +.            ++.....++++ ||++.++++ .|+.+++|++.++..+..-.. +.+++|||+.
T Consensus       312 s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG  379 (432)
T d1qksa2         312 THPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDG  379 (432)
T ss_dssp             CCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTS
T ss_pred             ecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccccccccCCCCCcEEEeEECCCC
Confidence             00            00001122333 667666664 677777887755433322222 8889999885

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=6e-19  Score=180.63  Aligned_cols=273  Identities=12%  Similarity=0.010  Sum_probs=184.0

Q ss_pred             CcccccccCccceeEEEeec--CcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcc
Q 005342          307 DKLKFPSMDKSRLLSLIKQI--MDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLD  376 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h--~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (701)
                      ++|.+||+++++++..+..+  ...+.  .++|+||        +.++.|.+||+.+++.+..+          ..+.. 
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~--~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~----------~~~~~-   77 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIADAGPTPM--VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI----------DLSTP-   77 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCC--CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE----------ECCBT-
T ss_pred             CEEEEEECCCCeEEEEEECCCCCCCcc--EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEE----------ecCCC-
Confidence            78999999999999999764  34566  9999999        67899999999999887762          22211 


Q ss_pred             cccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEc------------CCCcEEEEeccccCCCCceeEeecCCCCCCCC
Q 005342          377 ASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAK------------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGR  443 (701)
Q Consensus       377 ~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s------------~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~  443 (701)
                                   ..+.. +..++|+||+++++++.            .+..+.+||..    ++.+.....    +...
T Consensus        78 -------------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~----~~~~  136 (337)
T d1pbyb_          78 -------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE----TLSRRKAFE----APRQ  136 (337)
T ss_dssp             -------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT----TTEEEEEEE----CCSS
T ss_pred             -------------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc----CCeEEEecc----ccCC
Confidence                         11222 55789999999998876            35678888887    554433111    3456


Q ss_pred             EEEEEEecCCCEEEEEECCCcEEEEecCCCCcccccccc-ceeeEEeeCCCCeEEeecccCCCCCCeEEE--Eec--CCE
Q 005342          444 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV-NMESQLYQPSSKLVMTNDIAADPKDSISCF--ALR--GSH  518 (701)
Q Consensus       444 v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l--~~s--~~~  518 (701)
                      +.+++|+|||+++++++.+  +.+||..+.......... ......+.+......   ....+.......  ...  ...
T Consensus       137 ~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  211 (337)
T d1pbyb_         137 ITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW---NQHESSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             CCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC---CCCTTTTEEEEEEEEEBTTSCT
T ss_pred             ceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceee---ccccccceeeeeeeeeeeccce
Confidence            7789999999999887654  677887554330000000 000000011111100   000111111111  111  222


Q ss_pred             EEEEe-CCeEEEEeCCCCcEEE-EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe
Q 005342          519 LFSAS-GGKISIFSLETFQTLA-TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS  595 (701)
Q Consensus       519 l~s~s-dg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s  595 (701)
                      ...+. ++.+.+||..++.... .+..+...+..++++|++ +++.+  ++.|++||+.+++.+..+. +...+.+++|+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s  288 (337)
T d1pbyb_         212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVS  288 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEEC
T ss_pred             eeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEEC
Confidence            22333 5679999999887554 345567778899999999 77665  4899999999999998876 56778999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCeee
Q 005342          596 LSLNVLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       596 pdg~~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      |||++|++++.|++|+|||..+++.+
T Consensus       289 ~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         289 TDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            99999999999999999999998644

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=3.2e-19  Score=183.44  Aligned_cols=270  Identities=12%  Similarity=0.021  Sum_probs=179.8

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeE-EEEcCCCcEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSA-VCAKSLEKSVN  418 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l-~s~s~d~~v~i  418 (701)
                      +.|++|.+||+.+++.+..+          +-                  .|.. +.+++|+|||+++ +++..++.|.+
T Consensus        15 ~~~~~v~v~D~~t~~~~~t~----------~~------------------~~~~~p~~l~~spDG~~l~v~~~~~~~v~~   66 (346)
T d1jmxb_          15 NYPNNLHVVDVASDTVYKSC----------VM------------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYG   66 (346)
T ss_dssp             ETTTEEEEEETTTTEEEEEE----------EC------------------SSCCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cCCCEEEEEECCCCCEEEEE----------Ec------------------CCCCCcceEEECCCCCEEEEEECCCCcEEE
Confidence            67899999999999887762          11                  2223 6689999999987 56678899999


Q ss_pred             EeccccCCCCceeE-eecCC--CCCCCCEEEEEEecCCCEEEEEEC------------CCcEEEEecCCCCccccccccc
Q 005342          419 LKLQLINEPSECRT-LLLPD--NSFGGRVVRLIYSHSGDFLVALTQ------------TATHKLWKWQSNKQSLEEENVN  483 (701)
Q Consensus       419 w~~~~~~~~~~~~~-l~~~~--~~~~~~v~~l~~spdg~~l~s~s~------------dg~i~vwd~~~~~~~~g~~~~~  483 (701)
                      ||+.    +++... +....  ..+...+..++|+|||+++++++.            ++.+.+|+.             
T Consensus        67 ~d~~----t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~-------------  129 (346)
T d1jmxb_          67 IDLD----TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST-------------  129 (346)
T ss_dssp             EETT----TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG-------------
T ss_pred             EeCc----cCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEec-------------
Confidence            9998    454322 22111  111224567899999999887764            344555543             


Q ss_pred             eeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-----
Q 005342          484 MESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-----  557 (701)
Q Consensus       484 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-----  557 (701)
                              .++......-.......+..+.++ +..++.. ++.+.+||..+++.+..+..+. ....+.++|++     
T Consensus       130 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  199 (346)
T d1jmxb_         130 --------ADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA-GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWP  199 (346)
T ss_dssp             --------GGGGGBCCSEEEECCSSCCCEEECTTSCEEEE-SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCC
T ss_pred             --------ccceeeeEEEeeeccCceEEEEecCCCEEEEe-CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEE
Confidence                    333321100000112344455566 4444433 3558999999998888776432 22333334433     


Q ss_pred             ----------------------eEEEEeCCCcEEEEeCCCCceEE-eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342          558 ----------------------LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD  614 (701)
Q Consensus       558 ----------------------~l~~gs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd  614 (701)
                                            .++++..++.+.+||..++.... .+.+|...+..+.++|++.++++++. +.|++||
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d  278 (346)
T d1jmxb_         200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYD  278 (346)
T ss_dssp             CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEE
T ss_pred             EecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEE
Confidence                                  23334455678889988876554 34557888999999998888877664 5899999


Q ss_pred             CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ..+++....     +..+     ..+.+++|||||++++++ .|+.|+|||+.+++.+++++.
T Consensus       279 ~~~~~~~~~-----~~~~-----~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         279 LKQRKLIKA-----ANLD-----HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             TTTTEEEEE-----EECS-----SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCcEEEE-----EcCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            999864322     2222     568899999999999997 899999999999999998874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.4e-16  Score=162.73  Aligned_cols=272  Identities=10%  Similarity=0.095  Sum_probs=174.5

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEE-EcCCCcEEE
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVC-AKSLEKSVN  418 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s-~s~d~~v~i  418 (701)
                      +.|++|++|++.+...+..+          .                . ..|.. |..++|+|||++|++ +..|+.|++
T Consensus        11 ~~~~~I~v~~~~~~~~l~~~----------~----------------~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~   63 (333)
T d1ri6a_          11 PESQQIHVWNLNHEGALTLT----------Q----------------V-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA   63 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEE----------E----------------E-EECSSCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCcEEEEEEcCCCCeEEE----------E----------------E-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEE
Confidence            45899999999866544331          0                0 14555 888999999999854 556899999


Q ss_pred             EeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEE
Q 005342          419 LKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM  497 (701)
Q Consensus       419 w~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~  497 (701)
                      |++......   ..+.. ...+...+..++|+|||+++++++. ++.+.+|+....                   .....
T Consensus        64 ~~i~~~~~~---~~~~~-~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~-------------------~~~~~  120 (333)
T d1ri6a_          64 YRIAPDDGA---LTFAA-ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-------------------LPVGV  120 (333)
T ss_dssp             EEECTTTCC---EEEEE-EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT-------------------EEEEE
T ss_pred             EEEeCCCCc---EEEee-ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccc-------------------cceec
Confidence            998732111   11110 0113455678999999999999886 678888865221                   11111


Q ss_pred             eecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEE------ecCCCCCeEEEEEcCCC-e-EEEEeCC
Q 005342          498 TNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLAT------FANPPPIATYFILLPQD-L-FAFGFDD  565 (701)
Q Consensus       498 ~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~------~~~~~~~i~~l~~spdg-~-l~~gs~d  565 (701)
                      .. . ..+...+.++.++  ++++++++  +..|.+|+..+......      ..........++|++++ . +.++...
T Consensus       121 ~~-~-~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~  198 (333)
T d1ri6a_         121 VD-V-VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN  198 (333)
T ss_dssp             EE-E-ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             cc-c-cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecccc
Confidence            11 1 2355667788888  77777777  57899999876532211      12234556899999999 4 4455566


Q ss_pred             CcEEEEeCCCCc----eEEeec------CCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCeeeeeeeeeeccCCCC
Q 005342          566 SSILVHCPCTKK----TKAKLK------GHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV  634 (701)
Q Consensus       566 g~I~iwd~~~~~----~~~~l~------~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~  634 (701)
                      +...+|+.....    ......      ........++++|++++++ ++..++.+.+|++....... ........+  
T Consensus       199 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--  275 (333)
T d1ri6a_         199 SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL-SKEGFQPTE--  275 (333)
T ss_dssp             TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE-EEEEEEECS--
T ss_pred             CceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE-EEEEEeCCC--
Confidence            778888765322    111111      1234567789999998665 45667899999987643221 111111111  


Q ss_pred             CCCCCeEEEEEcCCCCEEEEE--ecCeEEEE--ECCCCce
Q 005342          635 PETTIVNHIQFHPDQIHLLSI--HEGQIDVY--EAPTLNH  670 (701)
Q Consensus       635 ~~~~~v~~v~~spdg~~l~sg--~Dg~I~iw--d~~~g~~  670 (701)
                         ..+.+++|+|||++|+++  .+++|++|  |.++|++
T Consensus       276 ---~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         276 ---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             ---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             ---CCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence               556789999999998875  57899999  5567764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=4.9e-17  Score=166.77  Aligned_cols=286  Identities=14%  Similarity=0.046  Sum_probs=182.7

Q ss_pred             CcccccccCccceeEEEe-ecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccc
Q 005342          307 DKLKFPSMDKSRLLSLIK-QIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDA  377 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~-~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (701)
                      ++|.+||+.+++++.++. .|...+.  +++|+||        +.+++|.+||+.+++....+          ....   
T Consensus        18 ~~v~v~D~~t~~~~~t~~~~~~~~p~--~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~----------~~~~---   82 (346)
T d1jmxb_          18 NNLHVVDVASDTVYKSCVMPDKFGPG--TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA----------NLSS---   82 (346)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSSC--EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----------ESCC---
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCCcc--eEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee----------cccc---
Confidence            789999999999999987 4566678  9999999        67899999999999877652          1110   


Q ss_pred             ccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEc------------CCCcEEEEeccccCCCCceeEeecCCCCCCCCE
Q 005342          378 SSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAK------------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRV  444 (701)
Q Consensus       378 s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s------------~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v  444 (701)
                                ....+.. +..++|+|||+++++++            .++.+.+|+..+..........     .....+
T Consensus        83 ----------~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~  147 (346)
T d1jmxb_          83 ----------VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-----PMPRQV  147 (346)
T ss_dssp             ----------STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-----ECCSSC
T ss_pred             ----------cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee-----eccCce
Confidence                      0012222 56799999999998765            4677888888732211111111     123445


Q ss_pred             EEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc-cceeeEEeeCCCCeEEeecccCCCCCCeEEEEe----c--CC
Q 005342          445 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN-VNMESQLYQPSSKLVMTNDIAADPKDSISCFAL----R--GS  517 (701)
Q Consensus       445 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~----s--~~  517 (701)
                      ..+.+++++..+++   ++.+.+|++.+......... .......+.+.......   .......+.....    .  ..
T Consensus       148 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  221 (346)
T d1jmxb_         148 YLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP---HQSPRHEFSMLYTIARFKDDKQ  221 (346)
T ss_dssp             CCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC---CCCTTCEEEEEEEEEEC-----
T ss_pred             EEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEE---EecCCCceEeeeeeeeeccCce
Confidence            56677777775544   24578888755443000000 00000001111111110   0011111111111    1  33


Q ss_pred             EEEEEe-CCeEEEEeCCCCcEEEE-ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE
Q 005342          518 HLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY  594 (701)
Q Consensus       518 ~l~s~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~  594 (701)
                      .++++. ++.+.+||..++..... ...+...+..+.+++++ .++.+.. +.|.+||..+++.+..+. +...+.+++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~  299 (346)
T d1jmxb_         222 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAF  299 (346)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEE
T ss_pred             eEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEE
Confidence            344555 67899999998875543 44577788999999999 7766654 579999999999988776 4457999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCC
Q 005342          595 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  633 (701)
Q Consensus       595 spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~  633 (701)
                      +|||++|++++.|+.|+|||+.+++.+  ..+. ++.++
T Consensus       300 s~DG~~l~v~~~d~~v~v~D~~t~~~i--~~i~-~p~g~  335 (346)
T d1jmxb_         300 DKKGDKLYLGGTFNDLAVFNPDTLEKV--KNIK-LPGGD  335 (346)
T ss_dssp             CSSSSCEEEESBSSEEEEEETTTTEEE--EEEE-CSSSC
T ss_pred             cCCCCEEEEEeCCCcEEEEECccCCEE--EEEE-CCCCC
Confidence            999999999999999999999998744  3444 55554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.75  E-value=1.2e-15  Score=158.85  Aligned_cols=285  Identities=9%  Similarity=-0.050  Sum_probs=185.0

Q ss_pred             ecCcceeeeEEEEccC------------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342          325 QIMDWWVPYCINVMPN------------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN  392 (701)
Q Consensus       325 ~h~~~v~~~~l~fspd------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h  392 (701)
                      .+...+.  .++++||            +.++.+.+||..+++.+..          +..+.                  
T Consensus        18 ~~~~p~~--~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~----------~~~~~------------------   67 (373)
T d2madh_          18 AADGPTN--DEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH----------VNGGF------------------   67 (373)
T ss_pred             cCCCCcc--ccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE----------EeCCC------------------
Confidence            4566677  8888888            3456799999999988776          22221                  


Q ss_pred             CceEEEEEcCCCCeEEEEc----------CCCcEEEEeccccCCCCceeE-eecCCC---CCCCCEEEEEEecCCCEEEE
Q 005342          393 NQSRESTSLPDADSAVCAK----------SLEKSVNLKLQLINEPSECRT-LLLPDN---SFGGRVVRLIYSHSGDFLVA  458 (701)
Q Consensus       393 ~~V~~l~~spdg~~l~s~s----------~d~~v~iw~~~~~~~~~~~~~-l~~~~~---~~~~~v~~l~~spdg~~l~s  458 (701)
                        ...++|+|||+++++++          .++.|.+||..    +++... +..+..   .-......+.|++|++.++.
T Consensus        68 --~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~----t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v  141 (373)
T d2madh_          68 --LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV----TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLF  141 (373)
T ss_pred             --CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECC----CCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEE
Confidence              12589999999999875          45789999998    554433 111110   00112245788888887665


Q ss_pred             EEC--CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE-EEEEe-CCeEEEEeC
Q 005342          459 LTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH-LFSAS-GGKISIFSL  532 (701)
Q Consensus       459 ~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~-l~s~s-dg~I~iwd~  532 (701)
                      ...  ++.+.+|+                     ..+++...      +.....++.++  |+. +++.+ |+.+.+||.
T Consensus       142 ~~~~~~~~~~~~~---------------------~~~~~~~~------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~  194 (373)
T d2madh_         142 FQFAAGPAVGLVV---------------------QGGSSDDQ------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             EEEcCCCceEEee---------------------ccCCeEEE------EeccceeEEEecCCCcEEEEEcCCCeEEEEEc
Confidence            543  45666664                     34444332      22345567777  554 45666 899999999


Q ss_pred             CCCcEEEEecCC------CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEE--eecCCC----------CCeEEEEE
Q 005342          533 ETFQTLATFANP------PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA--KLKGHQ----------NRITCLAY  594 (701)
Q Consensus       533 ~~~~~~~~~~~~------~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~--~l~~h~----------~~V~~v~~  594 (701)
                      .++........+      ........+++++.++..+.++.+++|+..++....  .+..+.          .....+++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (373)
T d2madh_         195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY  274 (373)
T ss_pred             CCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEE
Confidence            888776655422      222345566666655566788999999988765322  222221          22344566


Q ss_pred             ecCCCEEE----------EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE--EEE-ecCeEE
Q 005342          595 SLSLNVLV----------SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL--LSI-HEGQID  661 (701)
Q Consensus       595 spdg~~l~----------s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l--~sg-~Dg~I~  661 (701)
                      +|++..++          +...++.+.+||..+++...  .   +..+     ..+.+++|+|||+.+  +++ .|++|+
T Consensus       275 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~--~---~~~~-----~~~~~~a~spDG~~~l~vt~~~d~~v~  344 (373)
T d2madh_         275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS--Q---ISLG-----HDVDAISVAQDGGPDLYALSAGTEVLH  344 (373)
T ss_pred             ecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE--E---ecCC-----CCeeEEEECCCCCEEEEEEeCCCCeEE
Confidence            66665443          45567789999999986432  1   2212     668899999999853  444 799999


Q ss_pred             EEECCCCceeeeeee----eeEEEE
Q 005342          662 VYEAPTLNHTSQVLL----ISHIMF  682 (701)
Q Consensus       662 iwd~~~g~~~~~l~~----i~~~~f  682 (701)
                      |||+.+|+.++++.+    .+.+++
T Consensus       345 v~D~~tg~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         345 IYDAGAGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             EEECCCCCEEEEECCCCCCCcEEEE
Confidence            999999999999975    555554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.7e-15  Score=154.62  Aligned_cols=264  Identities=8%  Similarity=0.006  Sum_probs=173.3

Q ss_pred             CcccccccCccceeEEEe--ecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcc
Q 005342          307 DKLKFPSMDKSRLLSLIK--QIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLD  376 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~--~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (701)
                      ++|++||+.+...+..++  .|.+.+.  .++||||        ..|++|++|++..+.....          +.++.  
T Consensus        14 ~~I~v~~~~~~~~l~~~~~~~~~~~v~--~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~----------~~~~~--   79 (333)
T d1ri6a_          14 QQIHVWNLNHEGALTLTQVVDVPGQVQ--PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT----------FAAES--   79 (333)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSCCC--CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE----------EEEEE--
T ss_pred             CcEEEEEEcCCCCeEEEEEEcCCCCEe--EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE----------Eeeec--
Confidence            789999997765554444  6788899  9999999        6689999999987655433          11110  


Q ss_pred             cccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcC-CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC
Q 005342          377 ASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD  454 (701)
Q Consensus       377 ~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~  454 (701)
                                    .+.. +..++|+|||++|++++. ++.+.+|+..    ........ ....+...+.++.++||++
T Consensus        80 --------------~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~----~~~~~~~~-~~~~~~~~~~~v~~s~d~~  140 (333)
T d1ri6a_          80 --------------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE----DGLPVGVV-DVVEGLDGCHSANISPDNR  140 (333)
T ss_dssp             --------------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE----TTEEEEEE-EEECCCTTBCCCEECTTSS
T ss_pred             --------------ccCCCceEEEEcCCCCEEeecccCCCceeeeccc----cccceecc-cccCCCccceEEEeeecce
Confidence                          1222 668999999999988874 6788999886    33222211 1123566788899999999


Q ss_pred             EEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEE
Q 005342          455 FLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISI  529 (701)
Q Consensus       455 ~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~i  529 (701)
                      ++++++. +..+.+|+.......                 ..................++++  +..++...  .+...+
T Consensus       141 ~~~~~~~~~~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v  203 (333)
T d1ri6a_         141 TLWVPALKQDRICLFTVSDDGHL-----------------VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDV  203 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCE-----------------EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeccccccceeeEEEeccCCcc-----------------eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEE
Confidence            9888876 567888876332110                 0000000112344566788998  66665554  578888


Q ss_pred             EeCCCCc----EEEEec------CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeec---CCCCCeEEEEE
Q 005342          530 FSLETFQ----TLATFA------NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK---GHQNRITCLAY  594 (701)
Q Consensus       530 wd~~~~~----~~~~~~------~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~v~~  594 (701)
                      |+.....    ......      ........+++++++  .++++..++.+.+|++..........   .+...+..++|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~  283 (333)
T d1ri6a_         204 WELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV  283 (333)
T ss_dssp             EESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEE
T ss_pred             EeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEE
Confidence            8764332    112221      123345778999999  56666778899999887654333222   23456788999


Q ss_pred             ecCCCEEEEEe-CCCeEEEE--ECCCCee
Q 005342          595 SLSLNVLVSSG-ADAQLCVW--DAVGWKK  620 (701)
Q Consensus       595 spdg~~l~s~s-~D~~I~vw--d~~~g~~  620 (701)
                      +|||++|++++ .+++|++|  |..+|+.
T Consensus       284 spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         284 DHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             CTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             eCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            99999876654 56899998  5567754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=7.9e-16  Score=158.82  Aligned_cols=268  Identities=12%  Similarity=0.034  Sum_probs=166.0

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEE----------
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCA----------  410 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~----------  410 (701)
                      ..++++.+||..+++.+..+          ..+                    .+..++|||||++|+.+          
T Consensus        25 ~~~~~v~v~D~~tg~~~~~~----------~~g--------------------~~~~~a~SpDg~~l~v~~~~~~~~~~g   74 (355)
T d2bbkh_          25 AAVTQQFVIDGEAGRVIGMI----------DGG--------------------FLPNPVVADDGSFIAHASTVFSRIARG   74 (355)
T ss_dssp             CSSEEEEEEETTTTEEEEEE----------EEC--------------------SSCEEEECTTSSCEEEEEEEEEETTEE
T ss_pred             CCcCeEEEEECCCCcEEEEE----------ECC--------------------CCCceEEcCCCCEEEEEeCCCcccccc
Confidence            44678999999999887762          211                    12358999999988764          


Q ss_pred             cCCCcEEEEeccccCCCCceeE-eecCCC---CCCCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccce
Q 005342          411 KSLEKSVNLKLQLINEPSECRT-LLLPDN---SFGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNM  484 (701)
Q Consensus       411 s~d~~v~iw~~~~~~~~~~~~~-l~~~~~---~~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~  484 (701)
                      +.|+.|.+||..    +++... +..+..   ........++|+|+|+++++++.  +..+.+|+.              
T Consensus        75 ~~d~~v~v~D~~----t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~--------------  136 (355)
T d2bbkh_          75 ERTDYVEVFDPV----TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL--------------  136 (355)
T ss_dssp             EEEEEEEEECTT----TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET--------------
T ss_pred             CCCCEEEEEECC----CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeec--------------
Confidence            347899999998    454432 222111   11223456899999998887764  567777754              


Q ss_pred             eeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEe------cCCCCCeEEEEEcCCC
Q 005342          485 ESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATF------ANPPPIATYFILLPQD  557 (701)
Q Consensus       485 ~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~------~~~~~~i~~l~~spdg  557 (701)
                             .++..... +. .+ .............+..+ |+....+..........+      ..+...+....+++++
T Consensus       137 -------~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (355)
T d2bbkh_         137 -------EGKAFKRM-LD-VP-DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA  206 (355)
T ss_dssp             -------TTTEEEEE-EE-CC-SEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             -------CCCcEeeE-Ee-cC-CcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCC
Confidence                   44443322 11 11 11111111122222222 444444333222211111      1223345566778888


Q ss_pred             -eEEEEeCCCcEEEEeCCCCceE--EeecCCC----------CCeEEEEEecCCCEEEEEeCC----------CeEEEEE
Q 005342          558 -LFAFGFDDSSILVHCPCTKKTK--AKLKGHQ----------NRITCLAYSLSLNVLVSSGAD----------AQLCVWD  614 (701)
Q Consensus       558 -~l~~gs~dg~I~iwd~~~~~~~--~~l~~h~----------~~V~~v~~spdg~~l~s~s~D----------~~I~vwd  614 (701)
                       .++.++.++.+++|++..+...  ....++.          .....++++|++..++..+.+          ..|.+||
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d  286 (355)
T d2bbkh_         207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  286 (355)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEe
Confidence             8888999999999999877542  2222221          234558899999977765433          4799999


Q ss_pred             CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCE-E-EEE-ecCeEEEEECCCCceeeeeee
Q 005342          615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-L-LSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~-l-~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ..+++........          ..+.+++|+|||+. + +++ .|++|++||+++|+.++++.+
T Consensus       287 ~~t~~~~~~~~~~----------~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         287 AKTGERLAKFEMG----------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             TTTCCEEEEEEEE----------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             CCCCcEEEEecCC----------CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence            9998644322222          56789999999973 3 445 689999999999999999875

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=3e-14  Score=148.02  Aligned_cols=257  Identities=8%  Similarity=-0.062  Sum_probs=170.3

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-----------------CCCCeEEEEeccCCccccccccccCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----------------ANNETISLKDFPTVSNLRYASSILTDKPN  369 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~  369 (701)
                      ..|.+||..+++.+..+..+..  .  .++||||                 +.++.|.+||..+++....          
T Consensus        47 ~~v~v~D~~tg~~~~~~~~~~~--~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~----------  112 (373)
T d2madh_          47 IQQWVLDAGSGSILGHVNGGFL--P--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD----------  112 (373)
T ss_pred             ceEEEEECCCCCEEEEEeCCCC--c--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEE----------
Confidence            5688999999999999876643  3  6899999                 3468899999999988776          


Q ss_pred             CCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc--CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEE
Q 005342          370 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL  447 (701)
Q Consensus       370 ~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s--~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l  447 (701)
                      +..+..           ...........+.|+||++.++...  .++.+.+|+..    ..+...       +.....++
T Consensus       113 ~~~~~~-----------~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~~~  170 (373)
T d2madh_         113 IELPDA-----------PRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG----GSSDDQ-------LLSSPTCY  170 (373)
T ss_pred             EecCCc-----------ceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeecc----CCeEEE-------EeccceeE
Confidence            222211           0000111134688999999776554  45678889886    443222       33456788


Q ss_pred             EEecCCCEE-EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeec----ccCCCCCCeEEEEec-CCEEEE
Q 005342          448 IYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTND----IAADPKDSISCFALR-GSHLFS  521 (701)
Q Consensus       448 ~~spdg~~l-~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~----~~~~~~~~v~~l~~s-~~~l~s  521 (701)
                      .++|+|+.+ ++.+.|+.+.+|+....                     ......    ...+.........++ +..++.
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGG---------------------AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW  229 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCc---------------------eeeEEEeeeccccCccceeeeEEECCCceEEE
Confidence            999999865 57778999999976432                     211100    001122223344455 444444


Q ss_pred             Ee-CCeEEEEeCCCCcEEE--EecCC----------CCCeEEEEEcCCC-eE----------EEEeCCCcEEEEeCCCCc
Q 005342          522 AS-GGKISIFSLETFQTLA--TFANP----------PPIATYFILLPQD-LF----------AFGFDDSSILVHCPCTKK  577 (701)
Q Consensus       522 ~s-dg~I~iwd~~~~~~~~--~~~~~----------~~~i~~l~~spdg-~l----------~~gs~dg~I~iwd~~~~~  577 (701)
                      .+ ++.+.+|+..++....  ....+          ......++++|++ .+          +....++.+.+||..+++
T Consensus       230 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~  309 (373)
T d2madh_         230 PVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ  309 (373)
T ss_pred             ecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc
Confidence            44 8899999987765322  11111          1223445666666 33          345566789999999999


Q ss_pred             eEEeecCCCCCeEEEEEecCCC--EEEEEeCCCeEEEEECCCCeee
Q 005342          578 TKAKLKGHQNRITCLAYSLSLN--VLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       578 ~~~~l~~h~~~V~~v~~spdg~--~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                      .+..+. +...+..++|+|||+  ++++++.|++|+|||+.+|+.+
T Consensus       310 ~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         310 TSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             EEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            988876 566789999999998  4578899999999999998643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=4.7e-14  Score=145.23  Aligned_cols=255  Identities=14%  Similarity=0.040  Sum_probs=161.7

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-----------------CCCCeEEEEeccCCccccccccccCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----------------ANNETISLKDFPTVSNLRYASSILTDKPN  369 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~  369 (701)
                      .+|.+||..+++.+.++..+.  ..  .++||||                 ..|+.|++||..+++....+         
T Consensus        28 ~~v~v~D~~tg~~~~~~~~g~--~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~---------   94 (355)
T d2bbkh_          28 TQQFVIDGEAGRVIGMIDGGF--LP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI---------   94 (355)
T ss_dssp             EEEEEEETTTTEEEEEEEECS--SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEE---------
T ss_pred             CeEEEEECCCCcEEEEEECCC--CC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEE---------
Confidence            568899999999999987653  34  7899999                 13788999999999887762         


Q ss_pred             CCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEc--CCCcEEEEeccccCCCCceeE-eecCCC---CCCC
Q 005342          370 QEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRT-LLLPDN---SFGG  442 (701)
Q Consensus       370 ~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s--~d~~v~iw~~~~~~~~~~~~~-l~~~~~---~~~~  442 (701)
                       ..+..           .-. .... ...++|+|+|++++.++  .+..+.+|+..    .++... +..+..   ....
T Consensus        95 -~~~~~-----------~~~-~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  157 (355)
T d2bbkh_          95 -ELPDA-----------PRF-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE----GKAFKRMLDVPDCYHIFPTA  157 (355)
T ss_dssp             -EETTC-----------CCC-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT----TTEEEEEEECCSEEEEEEEE
T ss_pred             -ecCCc-----------cee-ecCCCCceEEEecCCCeeEEecCCCCceeeeeecC----CCcEeeEEecCCcceEeecC
Confidence             11110           000 1111 44688999999887764  56788999997    444332 111000   0011


Q ss_pred             CEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE
Q 005342          443 RVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  519 (701)
Q Consensus       443 ~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l  519 (701)
                      ....+.+++||+.++.... ++.+.+++.                     ....       ..+...+....++  +..+
T Consensus       158 ~~~~~~~~~dg~~~~v~~~~~~~~~~~~~---------------------~~~~-------~~~~~~~~~~~~~~~~~~~  209 (355)
T d2bbkh_         158 PDTFFMHCRDGSLAKVAFGTEGTPEITHT---------------------EVFH-------PEDEFLINHPAYSQKAGRL  209 (355)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEEC---------------------CCCS-------CTTSCBCSCCEEETTTTEE
T ss_pred             CcceEEEcCCCCEEEEEecCCCeEEEEec---------------------cccc-------ceecceeeeccccCCCCeE
Confidence            2223445555554443322 233333322                     1111       1223334444555  6677


Q ss_pred             EEEe-CCeEEEEeCCCCcEE--EEecCC----------CCCeEEEEEcCCC-eEEEEeCC----------CcEEEEeCCC
Q 005342          520 FSAS-GGKISIFSLETFQTL--ATFANP----------PPIATYFILLPQD-LFAFGFDD----------SSILVHCPCT  575 (701)
Q Consensus       520 ~s~s-dg~I~iwd~~~~~~~--~~~~~~----------~~~i~~l~~spdg-~l~~gs~d----------g~I~iwd~~~  575 (701)
                      +.++ ++.+++|++..+...  .....+          ......+++++++ .++..+.+          ..|.+||..+
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t  289 (355)
T d2bbkh_         210 VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT  289 (355)
T ss_dssp             EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             EEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC
Confidence            7777 899999999877532  111111          1233568899999 55554433          3699999999


Q ss_pred             CceEEeecCCCCCeEEEEEecCCC--EEEEEeCCCeEEEEECCCCee
Q 005342          576 KKTKAKLKGHQNRITCLAYSLSLN--VLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       576 ~~~~~~l~~h~~~V~~v~~spdg~--~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      ++.+..+.. ...+.+++|+|||+  ++++++.|++|+|||+++|+.
T Consensus       290 ~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         290 GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             CcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence            999888874 35688999999997  456778899999999999864

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.59  E-value=7.3e-14  Score=150.41  Aligned_cols=326  Identities=8%  Similarity=-0.074  Sum_probs=192.4

Q ss_pred             CcccccccCccceeEEEeec-----CcceeeeEEEEccC----------------CCCCeEEEEeccCCccccccccccC
Q 005342          307 DKLKFPSMDKSRLLSLIKQI-----MDWWVPYCINVMPN----------------ANNETISLKDFPTVSNLRYASSILT  365 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h-----~~~v~~~~l~fspd----------------s~d~~i~lWd~~~~~~~~~~~~~~~  365 (701)
                      +.+.+||+.+++....+..+     ...+.  ++.||||                +.++.+.+||+++++....      
T Consensus        36 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~--~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l------  107 (470)
T d2bgra1          36 NNILVFNAEYGNSSVFLENSTFDEFGHSIN--DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE------  107 (470)
T ss_dssp             SCEEEEETTTCCEEEEECTTTTTTSSSCCC--EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS------
T ss_pred             CcEEEEECCCCCEEEEEchhhhhhccCccc--eeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccccc------
Confidence            67889999999988777654     46688  9999999                3357788999998865433      


Q ss_pred             CCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC------
Q 005342          366 DKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN------  438 (701)
Q Consensus       366 ~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~------  438 (701)
                                              ..|.. +..+.|||||+.+|... ++.+.+|+..    ++...++.....      
T Consensus       108 ------------------------~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~----~g~~~~~t~~~~~~~~~~  158 (470)
T d2bgra1         108 ------------------------ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEP----NLPSYRITWTGKEDIIYN  158 (470)
T ss_dssp             ------------------------SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESST----TSCCEECCSCCBTTTEEE
T ss_pred             ------------------------ccCCccccccccccCcceeeEee-cccceEEECC----CCceeeeeeccCCCcccc
Confidence                                    34556 88999999999999965 5789999987    554444221000      


Q ss_pred             ---------CCCCCEEEEEEecCCCEEEEEECCC-cEEEEecCCCCc--------------cccccccceeeEEeeCCCC
Q 005342          439 ---------SFGGRVVRLIYSHSGDFLVALTQTA-THKLWKWQSNKQ--------------SLEEENVNMESQLYQPSSK  494 (701)
Q Consensus       439 ---------~~~~~v~~l~~spdg~~l~s~s~dg-~i~vwd~~~~~~--------------~~g~~~~~~~i~~~d~~~~  494 (701)
                               ...+....+.|||||++|+....|. .+..|.+.....              ..|.......+.+|+..++
T Consensus       159 g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~  238 (470)
T d2bgra1         159 GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL  238 (470)
T ss_dssp             SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGC
T ss_pred             cccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCc
Confidence                     0123345688999999999988753 355554321111              1233334455778887766


Q ss_pred             eEEeecc---------cCCCCCCeEEEEec--CCEEEEEe--C---Ce--EEEEeCCCCcEEEEec------CCCC----
Q 005342          495 LVMTNDI---------AADPKDSISCFALR--GSHLFSAS--G---GK--ISIFSLETFQTLATFA------NPPP----  546 (701)
Q Consensus       495 ~~~~~~~---------~~~~~~~v~~l~~s--~~~l~s~s--d---g~--I~iwd~~~~~~~~~~~------~~~~----  546 (701)
                      .......         .......+..+.|.  +..++...  .   ..  +..+|..++.......      ....    
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~  318 (470)
T d2bgra1         239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR  318 (470)
T ss_dssp             CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred             ceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeec
Confidence            5322100         00123345677787  44443322  2   12  3444555555432211      0011    


Q ss_pred             -CeEEEEEcCCC---eEEEEeCCCc--EEEEeCCCCceEEeecCCCCCeEEEEEecCCCEE-EEEeCCC------eEEEE
Q 005342          547 -IATYFILLPQD---LFAFGFDDSS--ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADA------QLCVW  613 (701)
Q Consensus       547 -~i~~l~~spdg---~l~~gs~dg~--I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l-~s~s~D~------~I~vw  613 (701)
                       ......+.+++   .++.+..||.  |++|+...+... .+..+...|..+ ++++++.+ ++++.++      .|+-.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~-~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v  396 (470)
T d2bgra1         319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKI  396 (470)
T ss_dssp             SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCE-ESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             ccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCcee-eeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEE
Confidence             11223444444   5667777875  455565555444 444344567776 55555544 3343322      24444


Q ss_pred             ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE----ecCeEEEEECCCCceeeeeee
Q 005342          614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg----~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      ++..+..  ...+..-..+|.   ..+.+++|||||++++..    ..-.+.+|+..+|+.++.+..
T Consensus       397 ~~~g~~~--~~~lt~~~~~~~---~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~  458 (470)
T d2bgra1         397 QLSDYTK--VTCLSCELNPER---CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED  458 (470)
T ss_dssp             ETTCTTC--EEESSTTTSTTT---BCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCc--eeEecccccCCC---CCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence            5554321  122221112343   789999999999998853    233589999999999998854

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=5e-13  Score=138.77  Aligned_cols=265  Identities=12%  Similarity=-0.050  Sum_probs=165.0

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc---------
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK---------  411 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s---------  411 (701)
                      +.+..+.+||..+++.+..+          .++                   . ...++|+|||+.++..+         
T Consensus        43 ~g~~~~~~~d~~~~~~~~~~----------~~~-------------------~-~~~~a~spDg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          43 AGTTENWVSCAGCGVTLGHS----------LGA-------------------F-LSLAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CSSEEEEEEETTTTEEEEEE----------EEC-------------------T-TCEEEECTTSSCEEEEEEEETTTTSS
T ss_pred             CCcceEEEEeCCCCcEEEEE----------eCC-------------------C-CCcceECCCCCEEEEEcccCcccccc
Confidence            44556778899888877762          211                   1 22588999999998754         


Q ss_pred             -CCCcEEEEeccccCCCCcee-EeecCCC---CCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCcccccccccee
Q 005342          412 -SLEKSVNLKLQLINEPSECR-TLLLPDN---SFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNME  485 (701)
Q Consensus       412 -~d~~v~iw~~~~~~~~~~~~-~l~~~~~---~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~  485 (701)
                       .|+.|.+||..    +++.. .+..+..   ........++|+|||++++++.. ++.+.+||+               
T Consensus        93 ~~d~~v~v~D~~----t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~---------------  153 (368)
T d1mdah_          93 KRTDYVEVFDPV----TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSV---------------  153 (368)
T ss_dssp             SEEEEEEEECTT----TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEE---------------
T ss_pred             ccCCeEEEEECC----CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEEC---------------
Confidence             46789999998    44432 2222221   01122346899999999988875 699999965               


Q ss_pred             eEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEe------cCCCCCeEEEEEcCCC
Q 005342          486 SQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF------ANPPPIATYFILLPQD  557 (701)
Q Consensus       486 i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~------~~~~~~i~~l~~spdg  557 (701)
                            .+++.... +. .+....  +... ...++..+ ||.+.++++.........      ..+...+....+.+++
T Consensus       154 ------~~~~~~~~-~~-~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  223 (368)
T d1mdah_         154 ------PGASDDQL-TK-SASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG  223 (368)
T ss_dssp             ------TTTEEEEE-EE-CSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             ------CCCcEeEE-ee-ccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc
Confidence                  45554332 11 121111  1122 44555556 888888887655433222      2233445667788887


Q ss_pred             -eEEEEeCCCcEEEEeCCCCceEEe--ecCC----------CCCeEEEEEecCCCEEEEEeCC---------CeEEEEEC
Q 005342          558 -LFAFGFDDSSILVHCPCTKKTKAK--LKGH----------QNRITCLAYSLSLNVLVSSGAD---------AQLCVWDA  615 (701)
Q Consensus       558 -~l~~gs~dg~I~iwd~~~~~~~~~--l~~h----------~~~V~~v~~spdg~~l~s~s~D---------~~I~vwd~  615 (701)
                       .+.+  .++.+++++...+.....  ..++          ......++++|++..++....+         ..|.+||.
T Consensus       224 ~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~  301 (368)
T d1mdah_         224 MLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             EEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             EEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence             4443  356677777665543321  1111          1123457899998866544322         36999999


Q ss_pred             CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEE-EE-ecCeEEEEECCCCceeeeeee
Q 005342          616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLL-SI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~-sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      .+++........          ..+.+++|+|||+ +++ ++ .|++|++||..+|+.+++++.
T Consensus       302 ~t~~~~~~~~~~----------~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         302 SVGQTSGPISNG----------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             SSCCEEECCEEE----------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CCCcEeEEecCC----------CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            998644322222          5678999999997 444 44 689999999999999999875

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.43  E-value=3e-12  Score=132.71  Aligned_cols=260  Identities=7%  Similarity=-0.109  Sum_probs=156.8

Q ss_pred             CcccccccCccceeEEEeecCcceeeeEEEEccC-----------------CCCCeEEEEeccCCccccccccccCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----------------ANNETISLKDFPTVSNLRYASSILTDKPN  369 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~  369 (701)
                      ..+.+||..+++.+.++..+..  .  .++|+||                 +.|++|.+||..+++....+         
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~~--~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i---------  112 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAFL--S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI---------  112 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECTT--C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE---------
T ss_pred             ceEEEEeCCCCcEEEEEeCCCC--C--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeee---------
Confidence            3466779999999999887654  3  5789998                 23778999999999887762         


Q ss_pred             CCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEc-CCCcEEEEeccccCCCCceeE-eecCCCCCCCCEEE
Q 005342          370 QEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAK-SLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVR  446 (701)
Q Consensus       370 ~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s-~d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~  446 (701)
                       ..+..          ...  .... ...++|+|||++++.+. .++.+.+||+.    .++... +..+    ....  
T Consensus       113 -~~p~~----------~~~--~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~----~~~~~~~~~~~----~~~~--  169 (368)
T d1mdah_         113 -ELPDA----------PRF--SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP----GASDDQLTKSA----SCFH--  169 (368)
T ss_dssp             -EETTS----------CSC--CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEET----TTEEEEEEECS----SCCC--
T ss_pred             -cCCcc----------cee--cccCCccceEECCCCCEEEEEeCCCCeEEEEECC----CCcEeEEeecc----Ccce--
Confidence             21110          000  0011 33589999999998775 57999999998    554333 2221    1110  


Q ss_pred             EEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCC
Q 005342          447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGG  525 (701)
Q Consensus       447 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg  525 (701)
                       .+......+++.+.||.+.+++..........          ...      . ....+...+....+. ....+...++
T Consensus       170 -~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~----------~~~------~-~~~~~~~~~~~~~~~~~g~~~~~~~~  231 (368)
T d1mdah_         170 -IHPGAAATHYLGSCPASLAASDLAAAPAAAGI----------VGA------Q-CTGAQNCSSQAAQANYPGMLVWAVAS  231 (368)
T ss_dssp             -CEEEETTEEECCCCTTSCEEEECCSSCCCCEE----------CCC------C-SCTTSCBCSCCEEETTTTEEEECBSS
T ss_pred             -EccCCCceEEEEcCCCCEEEEEecCCceeeee----------eec------c-cccccccceeecccccCcEEEEecCC
Confidence             11122345666677888877765332110000          000      0 001222333344555 3344433455


Q ss_pred             eEEEEeCCCCcEEEEec--CC----------CCCeEEEEEcCCC-eEEEEeCC---------CcEEEEeCCCCceEEeec
Q 005342          526 KISIFSLETFQTLATFA--NP----------PPIATYFILLPQD-LFAFGFDD---------SSILVHCPCTKKTKAKLK  583 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~--~~----------~~~i~~l~~spdg-~l~~gs~d---------g~I~iwd~~~~~~~~~l~  583 (701)
                      .+++++...+.......  ..          ......++++|++ .+++...+         ..|.+||..+++.+..+.
T Consensus       232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~  311 (368)
T d1mdah_         232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS  311 (368)
T ss_dssp             CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred             CEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec
Confidence            66666665544322111  10          1123458899998 44443222         259999999999988876


Q ss_pred             CCCCCeEEEEEecCCC--EEEEEeCCCeEEEEECCCCeee
Q 005342          584 GHQNRITCLAYSLSLN--VLVSSGADAQLCVWDAVGWKKL  621 (701)
Q Consensus       584 ~h~~~V~~v~~spdg~--~l~s~s~D~~I~vwd~~~g~~~  621 (701)
                       +...+.+++|+|||+  ++++++.|++|++||..+|+.+
T Consensus       312 -~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         312 -NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             -EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             -CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence             345688999999997  3467778999999999998643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.27  E-value=2.2e-10  Score=122.60  Aligned_cols=109  Identities=9%  Similarity=0.050  Sum_probs=83.6

Q ss_pred             EEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeE
Q 005342          334 CINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSA  407 (701)
Q Consensus       334 ~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l  407 (701)
                      .+.|.++     ..|+.+.+||+.+++....          +.++              .+..|.. |.++.|||||++|
T Consensus        21 ~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~----------~~~~--------------~~~~~~~~i~~~~~SpDg~~i   76 (470)
T d2bgra1          21 SLRWISDHEYLYKQENNILVFNAEYGNSSVF----------LENS--------------TFDEFGHSINDYSISPDGQFI   76 (470)
T ss_dssp             CCEECSSSEEEEESSSCEEEEETTTCCEEEE----------ECTT--------------TTTTSSSCCCEEEECTTSSEE
T ss_pred             CCEeCCCCEEEEEcCCcEEEEECCCCCEEEE----------Echh--------------hhhhccCccceeEECCCCCEE
Confidence            4556666     4688999999999988765          2222              3456777 9999999999999


Q ss_pred             EEEcC---------CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342          408 VCAKS---------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       408 ~s~s~---------d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  475 (701)
                      +.++.         ++.+.+||+.    +++...    ...+...+..+.|||||+.++.. .++.+.+|+..++..
T Consensus        77 ~~~~~~~~~~r~s~~~~~~l~d~~----~~~~~~----l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~  144 (470)
T d2bgra1          77 LLEYNYVKQWRHSYTASYDIYDLN----KRQLIT----EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS  144 (470)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETT----TTEECC----SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC
T ss_pred             EEEECCcceeeeccCceEEEEECC----CCcccc----cccCCccccccccccCcceeeEe-ecccceEEECCCCce
Confidence            98753         5678899998    665443    33477889999999999998885 567899998876654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.20  E-value=2.8e-11  Score=125.67  Aligned_cols=293  Identities=9%  Similarity=0.003  Sum_probs=175.5

Q ss_pred             CcccccccCccceeEEEee------------------------------cCcceeeeEEEEccC--------CCCCeEEE
Q 005342          307 DKLKFPSMDKSRLLSLIKQ------------------------------IMDWWVPYCINVMPN--------ANNETISL  348 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~------------------------------h~~~v~~~~l~fspd--------s~d~~i~l  348 (701)
                      ++|++||+++++.+..+.-                              |.....  +..++||        ..+++|.+
T Consensus        21 G~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s--~t~gtpDGr~lfV~d~~~~rVav   98 (441)
T d1qnia2          21 GEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHIS--MTDGRYDGKYLFINDKANTRVAR   98 (441)
T ss_dssp             CCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEE--EETTEEEEEEEEEEETTTTEEEE
T ss_pred             CcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcc--eecccCCCCEEEEEcCCCCEEEE
Confidence            7788888888887777632                              222223  4445666        67889999


Q ss_pred             EeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCC--eEEEEcCCC-----------
Q 005342          349 KDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDAD--SAVCAKSLE-----------  414 (701)
Q Consensus       349 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~--~l~s~s~d~-----------  414 (701)
                      ||+.++++...+          +-                  .+.. +..++|+|||+  |++..+.+.           
T Consensus        99 IDl~t~k~~~ii----------~i------------------P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~  150 (441)
T d1qnia2          99 IRLDIMKTDKIT----------HI------------------PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS  150 (441)
T ss_dssp             EETTTTEEEEEE----------EC------------------TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred             EECCCCcEeeEE----------ec------------------CCCCCccceEEeccCCEEEEEeccCCcccccCcccccc
Confidence            999998876642          10                  1222 77899999998  444444322           


Q ss_pred             ------cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC-cEEEEecCCCCccccccccceeeE
Q 005342          415 ------KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA-THKLWKWQSNKQSLEEENVNMESQ  487 (701)
Q Consensus       415 ------~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg-~i~vwd~~~~~~~~g~~~~~~~i~  487 (701)
                            .+..+|..+   .....++..     ......+.++|||+++++.+.+. .+..++.                 
T Consensus       151 ~~~~~~~~~~iD~~t---~~v~~qI~v-----~~~p~~v~~spdGk~a~vt~~nse~~~~id~-----------------  205 (441)
T d1qnia2         151 LDNSYTMFTAIDAET---MDVAWQVIV-----DGNLDNTDADYTGKYATSTCYNSERAVDLAG-----------------  205 (441)
T ss_dssp             GGGEEEEEEEEETTT---CSEEEEEEE-----SSCCCCEEECSSSSEEEEEESCTTCCSSHHH-----------------
T ss_pred             cccccceEEeecCcc---ceeeEEEec-----CCCccceEECCCCCEEEEEecCCCceEEEec-----------------
Confidence                  123355542   111122222     24567899999999988887653 2222211                 


Q ss_pred             EeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEe
Q 005342          488 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGF  563 (701)
Q Consensus       488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs  563 (701)
                          .+...... +.  .......+.++  |+++..++++.+.+++..+.+.+..+..... ...+.++|||  .+++|.
T Consensus       206 ----~t~~~~d~-i~--v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~  277 (441)
T d1qnia2         206 ----TMRNDRDW-VV--VFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGK  277 (441)
T ss_dssp             ----HTCSSBCE-EE--EEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECT
T ss_pred             ----cCcceEEE-EE--eCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCC
Confidence                11110000 00  00000111222  6666665678888888877777777775544 5789999999  556788


Q ss_pred             CCCcEEEEeCCCCce--------EEeecCCC---CCeEEEEEecCCCEEEEEeCCCeEEEEECCC------Ceeeeeeee
Q 005342          564 DDSSILVHCPCTKKT--------KAKLKGHQ---NRITCLAYSLSLNVLVSSGADAQLCVWDAVG------WKKLCSKFL  626 (701)
Q Consensus       564 ~dg~I~iwd~~~~~~--------~~~l~~h~---~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~------g~~~~~~~l  626 (701)
                      .+++|.+||+.+...        ...+.++.   -.....+|+++|+...|.+-|++|..|++..      ++.. ...+
T Consensus       278 ~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~-~~v~  356 (441)
T d1qnia2         278 LSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRV-NYIR  356 (441)
T ss_dssp             TSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCC-CCEE
T ss_pred             cCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCC-ceeE
Confidence            899999999865321        01111111   1234468999998888899999999999742      1110 0111


Q ss_pred             eec----cCCCCCCCCCeEEEEEcCCCCEEEEE----ecC----------eEEEEECC
Q 005342          627 HSF----QTGLVPETTIVNHIQFHPDQIHLLSI----HEG----------QIDVYEAP  666 (701)
Q Consensus       627 ~~~----~~~~~~~~~~v~~v~~spdg~~l~sg----~Dg----------~I~iwd~~  666 (701)
                      ..+    ..||.   ..+.+.+++|||++|+++    .|+          +-.+.|+.
T Consensus       357 ~~~~v~y~~GH~---~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~  411 (441)
T d1qnia2         357 QKLDVQYQPGHN---HASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDIS  411 (441)
T ss_dssp             EEEECSSCEEEE---EETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECS
T ss_pred             eccccccCCCCC---ccccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEec
Confidence            212    23554   667778899999999996    243          34678884

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=4.8e-08  Score=95.17  Aligned_cols=211  Identities=11%  Similarity=0.013  Sum_probs=127.3

Q ss_pred             eEEEEEcCCCCeEEEEcCCC---cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKSLE---KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~---~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~  470 (701)
                      +.+.+|||||+.||......   .+.+.+..    .+....+..    +........|+|+|+.++.... ++...++..
T Consensus        41 ~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~  112 (269)
T d2hqsa1          41 LMSPAWSPDGSKLAYVTFESGRSALVIQTLA----NGAVRQVAS----FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  112 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETT----TCCEEEEEC----CSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             eeeeEECCCCCEEEEEEeeccCcceeeeecc----cCceeEEee----eecccccceecCCCCeeeEeeecCCccceeec
Confidence            77899999999999765432   34455554    444344332    5677889999999999887665 333333322


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CC--eEEEEeCCCCcEEEEecCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GG--KISIFSLETFQTLATFANP  544 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg--~I~iwd~~~~~~~~~~~~~  544 (701)
                                         .........  . ...........++  +..+...+  +|  .|...++.++... .....
T Consensus       113 -------------------~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~  169 (269)
T d2hqsa1         113 -------------------DLASGQIRQ--V-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWE  169 (269)
T ss_dssp             -------------------ETTTCCEEE--C-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCS
T ss_pred             -------------------cccccccee--e-eeccccccccccccccccceecccccCCceEeeeecccccce-eeecc
Confidence                               112222221  1 1222333344444  44444333  43  6777777665433 33345


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCC-C--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECCC
Q 005342          545 PPIATYFILLPQD-LFAFGFDD-S--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVG  617 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~d-g--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~---D~~I~vwd~~~  617 (701)
                      ........++|++ .++..+.+ +  .+.+.|...+.. . ...+........|||||++|+..+.   ...|+++++..
T Consensus       170 ~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         170 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q-VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-E-ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cccccccccccccceeEEEeecCCceeeeEeecccccc-e-EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            5667788999999 65555444 4  455556555543 2 3335556778899999998886554   35789999988


Q ss_pred             CeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342          618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  648 (701)
Q Consensus       618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd  648 (701)
                      +...   .   +....    +.+...+|||-
T Consensus       248 ~~~~---~---lt~~~----g~~~~p~WSP~  268 (269)
T d2hqsa1         248 RFKA---R---LPATD----GQVKFPAWSPY  268 (269)
T ss_dssp             CCEE---E---CCCSS----SEEEEEEECCC
T ss_pred             CCEE---E---EeCCC----CcEEeEEeCCC
Confidence            6422   2   22222    67788999983

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.09  E-value=1.7e-07  Score=92.13  Aligned_cols=239  Identities=10%  Similarity=0.038  Sum_probs=156.1

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCC--CCCCCCEEEEEEecCCCEEEEEEC--CCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD--NSFGGRVVRLIYSHSGDFLVALTQ--TATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~--~~~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~  470 (701)
                      ...++++|+|+.+++-..+..|++||.+    ..-+..+....  .+.......+++.++....+....  ++.+..++ 
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~----G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~-   99 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE----GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-   99 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT----SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC----CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc-
Confidence            5689999999999988888999999974    32222221110  112223456666665443333332  44555553 


Q ss_pred             CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec--CCC
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA--NPP  545 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~--~~~  545 (701)
                                          . .+..... +..........+++.  |..+++.. .+.+.+++. +++.+.++.  .+.
T Consensus       100 --------------------~-~g~~~~~-~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~  156 (279)
T d1q7fa_         100 --------------------Q-YGQFVRK-FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL  156 (279)
T ss_dssp             --------------------T-TSCEEEE-ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred             --------------------c-cccceee-cCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccc
Confidence                                2 2332221 222344567788887  66555555 688888886 566666653  344


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec--CCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCeee
Q 005342          546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKL  621 (701)
Q Consensus       546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~g~~~  621 (701)
                      .....++++++| .+++....+.|++||. +++.+.++.  ++......+++.|+|+++++-+. ++.|.+|+.. |+.+
T Consensus       157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~  234 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI  234 (279)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE
T ss_pred             cccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEE
Confidence            567889999999 8888888899999995 566666663  34456789999999997776544 4579999854 5432


Q ss_pred             eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce
Q 005342          622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH  670 (701)
Q Consensus       622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~  670 (701)
                        ..+.. . ...   .....|++.|||.++++..++.|++|...+..+
T Consensus       235 --~~~~~-~-~~~---~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         235 --SALES-K-VKH---AQCFDVALMDDGSVVLASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             --EEEEE-S-SCC---SCEEEEEEETTTEEEEEETTTEEEEEECSCCCC
T ss_pred             --EEEeC-C-CCC---CCEeEEEEeCCCcEEEEeCCCeEEEEEeeeecC
Confidence              22221 1 111   457899999999877766788999999877643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.06  E-value=6.5e-08  Score=96.41  Aligned_cols=225  Identities=12%  Similarity=0.078  Sum_probs=149.3

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      +..++++|||+++++...+++|..|+..     +....+.    .....+.+++|+|||+.+++...++.+..|+.    
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~-----g~~~~~~----~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~----   96 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPD-----GNQQIHA----TVEGKVSGLAFTSNGDLVATGWNADSIPVVSL----   96 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-----CCEEEEE----ECSSEEEEEEECTTSCEEEEEECTTSCEEEEE----
T ss_pred             cCCEEECCCCCEEEEeCCCCEEEEEeCC-----CCEEEEE----cCCCCcceEEEcCCCCeEEEecCCceEEEEEe----
Confidence            7789999999999999999998888864     3333322    13567999999999998888888888888865    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec---------
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA---------  542 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~---------  542 (701)
                                     +...+..... ...........+++.  |+++++.+ ++.+..+|..++.......         
T Consensus        97 ---------------~~~~~~~~~~-~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  160 (302)
T d2p4oa1          97 ---------------VKSDGTVETL-LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNS  160 (302)
T ss_dssp             ---------------ECTTSCEEEE-EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSST
T ss_pred             ---------------cccccceeec-cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeec
Confidence                           2222322110 111234567888888  55555555 7899999987765332221         


Q ss_pred             -CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342          543 -NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  619 (701)
Q Consensus       543 -~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~  619 (701)
                       ........+.++.+.++++.+..+.|+.++...........  .+......++++++|++.++...+++|..++...+.
T Consensus       161 ~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~  240 (302)
T d2p4oa1         161 ESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST  240 (302)
T ss_dssp             TCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE
T ss_pred             cCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE
Confidence             11223456666543367777888899999877643322111  123345679999999988888889999999877532


Q ss_pred             eeeeeeeeeccCCCCCCCCCeEEEEE---cCCCCEEEEEe
Q 005342          620 KLCSKFLHSFQTGLVPETTIVNHIQF---HPDQIHLLSIH  656 (701)
Q Consensus       620 ~~~~~~l~~~~~~~~~~~~~v~~v~~---spdg~~l~sg~  656 (701)
                          ..+.....+.    ...++++|   ++|++.|+++.
T Consensus       241 ----~~~~~~~~~~----~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         241 ----TIIAQAEQGV----IGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             ----EEEECGGGTC----TTEEEEEECCSTTTTTEEEEEE
T ss_pred             ----EEEEecCCCC----CCceEEEEcCCCCCCCEEEEEC
Confidence                2222233332    56799999   77888887643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=2.3e-07  Score=90.16  Aligned_cols=228  Identities=10%  Similarity=-0.017  Sum_probs=139.6

Q ss_pred             cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-CcEEEEecCCCCccccccccceeeEEeeCCC
Q 005342          415 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQSNKQSLEEENVNMESQLYQPSS  493 (701)
Q Consensus       415 ~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~  493 (701)
                      .|.+-|..    ......+.-    +...+...+|||||+.|+..... +...+|..                   +..+
T Consensus        20 ~l~i~d~d----G~~~~~l~~----~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~-------------------~~~~   72 (269)
T d2hqsa1          20 ELRVSDYD----GYNQFVVHR----SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQ-------------------TLAN   72 (269)
T ss_dssp             EEEEEETT----SCSCEEEEE----ESSCEEEEEECTTSSEEEEEECTTSSCEEEEE-------------------ETTT
T ss_pred             EEEEEcCC----CCCcEEEec----CCCceeeeEECCCCCEEEEEEeeccCcceeee-------------------eccc
Confidence            46666665    444444432    35678899999999999877653 33333322                   4344


Q ss_pred             CeEEeecccCCCCCCeEEEEec--CCEEEEEe--CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCC
Q 005342          494 KLVMTNDIAADPKDSISCFALR--GSHLFSAS--GG--KISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD  565 (701)
Q Consensus       494 ~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~d  565 (701)
                      +.....   ..+........|+  |..++...  ++  .+..+.......... ...........+++++  .+++...+
T Consensus        73 ~~~~~~---~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (269)
T d2hqsa1          73 GAVRQV---ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQA  148 (269)
T ss_dssp             CCEEEE---ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             CceeEE---eeeecccccceecCCCCeeeEeeecCCccceeecccccccceee-eeccccccccccccccccceeccccc
Confidence            443221   2356677888898  77777655  33  333344433333332 2344445666788887  55555555


Q ss_pred             C--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342          566 S--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV  640 (701)
Q Consensus       566 g--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v  640 (701)
                      |  .|.+.++..+.... +..+........|+|+++.++..+.++   .|.+.+...+..   ..+.    +.    ...
T Consensus       149 g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~----~~----~~~  216 (269)
T d2hqsa1         149 GRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLS----ST----FLD  216 (269)
T ss_dssp             SSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---EECC----CS----SSC
T ss_pred             CCceEeeeeccccccee-eecccccccccccccccceeEEEeecCCceeeeEeecccccc---eEee----cC----ccc
Confidence            5  56677776664433 344566677889999999888766544   455556665431   1111    22    566


Q ss_pred             EEEEEcCCCCEEEE-Ee---cCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342          641 NHIQFHPDQIHLLS-IH---EGQIDVYEAPTLNHTSQVLL---ISHIMFVQI  685 (701)
Q Consensus       641 ~~v~~spdg~~l~s-g~---Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~  685 (701)
                      ....|||||+.|+. +.   ...|+++++..+...+....   +...+|||.
T Consensus       217 ~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         217 ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             cceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence            78899999999886 32   34689999977765443333   788899984

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.6e-07  Score=99.35  Aligned_cols=331  Identities=9%  Similarity=-0.003  Sum_probs=188.3

Q ss_pred             CcccccccCccceeEEEeecCc-ceeeeEEEEccC----------------CCCCeEEEEeccCCccccccccccCCCCC
Q 005342          307 DKLKFPSMDKSRLLSLIKQIMD-WWVPYCINVMPN----------------ANNETISLKDFPTVSNLRYASSILTDKPN  369 (701)
Q Consensus       307 ~~i~iwd~~~~~~~~~l~~h~~-~v~~~~l~fspd----------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~  369 (701)
                      +.|.+||+.+++....+..+.- ........||||                +..+.+.++|+.++.....          
T Consensus        37 g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l----------  106 (465)
T d1xfda1          37 GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL----------  106 (465)
T ss_dssp             SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC----------
T ss_pred             CcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeec----------
Confidence            5677888888876555554332 112226678887                3456778888887765443          


Q ss_pred             CCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCC------
Q 005342          370 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGR------  443 (701)
Q Consensus       370 ~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~------  443 (701)
                      ....                .+...+....|||||+.+|.... +.+.+.+..    .+...+++.  .+..+.      
T Consensus       107 ~~~~----------------~~~~~l~~~~wSPDG~~iafv~~-~nl~~~~~~----~~~~~~lt~--~g~~~~i~nG~~  163 (465)
T d1xfda1         107 DPPE----------------VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHV----GKQAIRVVS--TGKEGVIYNGLS  163 (465)
T ss_dssp             CCTT----------------CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSS----SSCCEEEEC--CCBTTTEEEEEC
T ss_pred             cCcc----------------CCccccceeeeccCCceEEEEec-ceEEEEecC----CCceEEEec--ccCcceeecccc
Confidence            0000                01111445779999999998765 677777765    333333331  111121      


Q ss_pred             -----------EEEEEEecCCCEEEEEEC-CCcEEEEecCCC--Cc----------cccccccceeeEEeeCCCCeEEee
Q 005342          444 -----------VVRLIYSHSGDFLVALTQ-TATHKLWKWQSN--KQ----------SLEEENVNMESQLYQPSSKLVMTN  499 (701)
Q Consensus       444 -----------v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~--~~----------~~g~~~~~~~i~~~d~~~~~~~~~  499 (701)
                                 -.++.|||||++|+.... +..+..+.+...  ..          ..|.....+.+.++|..++.....
T Consensus       164 d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~  243 (465)
T d1xfda1         164 DWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE  243 (465)
T ss_dssp             CHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE
T ss_pred             chhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEE
Confidence                       257889999999998875 455666654321  11          344555556688889877653211


Q ss_pred             cccC----CCCCCeEEEEec--CCEEEEEe--C---CeEEEEeCCCCcEEEEecCC-CCC----eEEEEEcCCC-e--EE
Q 005342          500 DIAA----DPKDSISCFALR--GSHLFSAS--G---GKISIFSLETFQTLATFANP-PPI----ATYFILLPQD-L--FA  560 (701)
Q Consensus       500 ~~~~----~~~~~v~~l~~s--~~~l~s~s--d---g~I~iwd~~~~~~~~~~~~~-~~~----i~~l~~spdg-~--l~  560 (701)
                      ....    .....+..+.|+  ++.++...  +   ..+.++|..+++....+... ...    -....|+||| .  ++
T Consensus       244 ~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi  323 (465)
T d1xfda1         244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (465)
T ss_dssp             CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             EeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEE
Confidence            1111    122346778898  44444432  2   36889999999866554322 111    2456899999 3  23


Q ss_pred             EEe-CCC--cEEEEeCC------CCceEEeecCCCCCeEEE-EEecCCCEEE-EEeCCC----eEEEEECCCCeeeeeee
Q 005342          561 FGF-DDS--SILVHCPC------TKKTKAKLKGHQNRITCL-AYSLSLNVLV-SSGADA----QLCVWDAVGWKKLCSKF  625 (701)
Q Consensus       561 ~gs-~dg--~I~iwd~~------~~~~~~~l~~h~~~V~~v-~~spdg~~l~-s~s~D~----~I~vwd~~~g~~~~~~~  625 (701)
                      ..+ .+|  .++..++.      .+..+..+....-.|..+ +|+++++.|. ++..++    .++--++..+..  ..+
T Consensus       324 ~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~  401 (465)
T d1xfda1         324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQC  401 (465)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBC
T ss_pred             EeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--cee
Confidence            233 333  34433321      233344444334456665 6888887665 343332    344444444321  111


Q ss_pred             eeeccCCCCCCCCCeEEEEEcCCCCEEEEE----ecCeEEEEECCCCceeeeeee
Q 005342          626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg----~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      +. ......   ....++.|||++++++..    .--.+.+++..+|+.+..+..
T Consensus       402 lt-~~~~~~---~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~  452 (465)
T d1xfda1         402 LS-CDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLET  452 (465)
T ss_dssp             SS-TTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEEC
T ss_pred             ec-cccCCC---CCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEcC
Confidence            11 111111   567799999999999863    223588999999999888754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.98  E-value=1.6e-07  Score=96.18  Aligned_cols=254  Identities=12%  Similarity=0.041  Sum_probs=146.1

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEe-ecCCCCCCCCEEEEEEecCCCEEEEEEC---CCcEEEEec
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKW  470 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l-~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~  470 (701)
                      +..++|+|+++.|+++.. +.+..|.+..   .+..... ..+.   ......+.++++++.+.....   .+.+..+.+
T Consensus        42 ~s~la~s~d~~~ly~~~~-~~~~~~~i~~---~~~~~~~~~~~~---~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          42 ISWMTFDHERKNIYGAAM-KKWSSFAVKS---PTEIVHEASHPI---GGHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             CSEEEECTTSSEEEEEEB-TEEEEEEEEE---TTEEEEEEEEEC---CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEeC-CcEEEEEEeC---CCCeEEEeeecC---CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence            557999999999988765 5678887763   2222221 1111   233456778889885433322   466666544


Q ss_pred             CCCCccccccccceeeEEeeCCCCe---EEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCC-CcE--EEE
Q 005342          471 QSNKQSLEEENVNMESQLYQPSSKL---VMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQT--LAT  540 (701)
Q Consensus       471 ~~~~~~~g~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~-~~~--~~~  540 (701)
                      .....    ..   .+.-.+ ..+.   .... ........+.++.|+  |+++++++  ...|.+|+... +..  ...
T Consensus       115 ~~~~~----~~---~~~~~~-~~~~~~~~~~~-~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~  185 (365)
T d1jofa_         115 YKFAG----YG---NVFSVS-ETGKLEKNVQN-YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS  185 (365)
T ss_dssp             SSSCC----EE---EEEEEC-TTCCEEEEEEE-EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred             cCCCC----cc---eeEeee-ecceecCcccC-cccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc
Confidence            22110    00   000001 1111   1111 011233457899999  88888887  47899988653 322  222


Q ss_pred             ec--CCCCCeEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCceEE-----eec--------------CCCCCeEEEEEecC
Q 005342          541 FA--NPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKA-----KLK--------------GHQNRITCLAYSLS  597 (701)
Q Consensus       541 ~~--~~~~~i~~l~~spdg-~l-~~gs~dg~I~iwd~~~~~~~~-----~l~--------------~h~~~V~~v~~spd  597 (701)
                      ..  ......+.++|+|++ ++ +++-.+++|.+|++..++...     ...              .+......+.++||
T Consensus       186 ~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spd  265 (365)
T d1jofa_         186 VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS  265 (365)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT
T ss_pred             eeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCC
Confidence            21  234577999999999 55 555567899999987654321     111              11223567899999


Q ss_pred             CCEEEEEeC------CCeEEEEECCCC-eeeeeeeeeeccCCCCCCCCCeEEEEEcC-CCCEEEEE--ecCeEEEEECCC
Q 005342          598 LNVLVSSGA------DAQLCVWDAVGW-KKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI--HEGQIDVYEAPT  667 (701)
Q Consensus       598 g~~l~s~s~------D~~I~vwd~~~g-~~~~~~~l~~~~~~~~~~~~~v~~v~~sp-dg~~l~sg--~Dg~I~iwd~~~  667 (701)
                      |++|+++..      ...|..|++... .......+.......    ....+++++| +|++|+++  .++.|.+|++..
T Consensus       266 G~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         266 GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            998876632      224777776542 211112222111111    3457799998 89988875  689999998854


Q ss_pred             C
Q 005342          668 L  668 (701)
Q Consensus       668 g  668 (701)
                      .
T Consensus       342 ~  342 (365)
T d1jofa_         342 E  342 (365)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.97  E-value=2.5e-08  Score=103.11  Aligned_cols=228  Identities=7%  Similarity=-0.079  Sum_probs=145.0

Q ss_pred             EEEEcCCCcEEEEeccccCCCCceeE-eec--C------------------------CCCCCCCEEEEEEecCCCEEEEE
Q 005342          407 AVCAKSLEKSVNLKLQLINEPSECRT-LLL--P------------------------DNSFGGRVVRLIYSHSGDFLVAL  459 (701)
Q Consensus       407 l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~--~------------------------~~~~~~~v~~l~~spdg~~l~s~  459 (701)
                      ++||+.+|.|.+|++.    +++..+ +..  +                        ...|.........+|||+++++.
T Consensus        14 f~Sgg~sG~V~V~dlp----S~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~   89 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVP----SMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIN   89 (441)
T ss_dssp             EEECBTTCCEEEEEET----TTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCC----CCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEE
Confidence            6788889999999987    333222 110  0                        01233445556678999998777


Q ss_pred             EC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC--EEEEEeCCe--------
Q 005342          460 TQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS--HLFSASGGK--------  526 (701)
Q Consensus       460 s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~--~l~s~sdg~--------  526 (701)
                      .. ++.|.++|+                     .+++.... +.-.....+..++++  |+  +++..++..        
T Consensus        90 d~~~~rVavIDl---------------------~t~k~~~i-i~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          90 DKANTRVARIRL---------------------DIMKTDKI-THIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             ETTTTEEEEEET---------------------TTTEEEEE-EECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cCCCCEEEEEEC---------------------CCCcEeeE-EecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            65 788988855                     55553321 112345678888998  66  444443333        


Q ss_pred             ----------EEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC------------------------------
Q 005342          527 ----------ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD------------------------------  565 (701)
Q Consensus       527 ----------I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d------------------------------  565 (701)
                                +..+|..+.+...++.. ......+.++|+| ++++++.+                              
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                      35688888887777763 3456889999999 77766543                              


Q ss_pred             -----------CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCeee------eeeeee
Q 005342          566 -----------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKL------CSKFLH  627 (701)
Q Consensus       566 -----------g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~~------~~~~l~  627 (701)
                                 +.+.+++....+.+..+..+.+ ...++++|||++++ ++..+++|.|||+.+....      ....+.
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~  305 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV  305 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence                       3444555555556666665554 47789999999764 6778999999998752110      001111


Q ss_pred             eccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342          628 SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP  666 (701)
Q Consensus       628 ~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~  666 (701)
                          ++....-.....+|.++|....+. .|..|..|++.
T Consensus       306 ----~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         306 ----AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             ----ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ----eecccccCcccceecCCceEEEcccccceEEEeccc
Confidence                111011334667899999766664 79999999974

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=2.2e-07  Score=90.18  Aligned_cols=231  Identities=10%  Similarity=-0.030  Sum_probs=144.8

Q ss_pred             eEEEEEcCCCCeEEEE-cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          395 SRESTSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       395 V~~l~~spdg~~l~s~-s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                      -..+++.++|+..++. +..+.+..++..    ......  .... .......++++++|+.+++...++.++++     
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~----~~~~~~--~~~~-~~~~p~gvav~~~g~i~v~d~~~~~i~~~-----   83 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATG----STGTTV--LPFN-GLYQPQGLAVDGAGTVYVTDFNNRVVTLA-----   83 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC--------CEEE--CCCC-SCCSCCCEEECTTCCEEEEETTTEEEEEC-----
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCC----CceEEE--eccC-CccCceEEEEcCCCCEEEeeeeeceeeee-----
Confidence            5689999999976665 455677777664    221112  1111 12345678899999876665555555544     


Q ss_pred             CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEE
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY  550 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~  550 (701)
                                      +..++..+.   .........+++++  |+++++-. +..+..++...................
T Consensus        84 ----------------~~~~~~~~~---~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  144 (260)
T d1rwia_          84 ----------------AGSNNQTVL---PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG  144 (260)
T ss_dssp             ----------------TTCSCCEEC---CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCE
T ss_pred             ----------------eeccceeee---eeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcce
Confidence                            222222221   11223567889987  66655544 677888887554322221122344578


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342          551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  629 (701)
Q Consensus       551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~  629 (701)
                      ++++|+| .+++...++.|..+|.............-.....+++.++|+++++....+.|..++...+..   ..+   
T Consensus       145 i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~---~~~---  218 (260)
T d1rwia_         145 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---TVL---  218 (260)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC---EEC---
T ss_pred             eeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE---EEE---
Confidence            9999999 878888888999999776544333223445678999999999988888889999998766421   111   


Q ss_pred             cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342          630 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  665 (701)
Q Consensus       630 ~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~  665 (701)
                      .....   .....|+++++|.++++. .++.|+.++.
T Consensus       219 ~~~~~---~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         219 PFTGL---NTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CCCSC---CCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             ccCCC---CCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            11111   456899999999877774 5666665554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.76  E-value=9.1e-07  Score=87.80  Aligned_cols=243  Identities=9%  Similarity=0.005  Sum_probs=144.0

Q ss_pred             ccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCC
Q 005342          313 SMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSND  385 (701)
Q Consensus       313 d~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~  385 (701)
                      ++.+.+.++.+... .++.  .++++||       ..+++|..|+.... ...                           
T Consensus        14 ~~~~~~v~~~~p~~-~~~e--~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~---------------------------   62 (302)
T d2p4oa1          14 ELAPAKIITSFPVN-TFLE--NLASAPDGTIFVTNHEVGEIVSITPDGN-QQI---------------------------   62 (302)
T ss_dssp             CCCCEEEEEEECTT-CCEE--EEEECTTSCEEEEETTTTEEEEECTTCC-EEE---------------------------
T ss_pred             cCCcccEEEECCCC-CCcC--CEEECCCCCEEEEeCCCCEEEEEeCCCC-EEE---------------------------
Confidence            45566666666532 3577  8999996       34455544443221 111                           


Q ss_pred             CccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342          386 SSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT  464 (701)
Q Consensus       386 ~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  464 (701)
                         +..... +.+++|+|||+++++...++.+..|+....  .+....+.  ..........+++.++|+++++-+.++.
T Consensus        63 ---~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~n~i~~~~~g~~~v~~~~~~~  135 (302)
T d2p4oa1          63 ---HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS--DGTVETLL--TLPDAIFLNGITPLSDTQYLTADSYRGA  135 (302)
T ss_dssp             ---EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT--TSCEEEEE--ECTTCSCEEEEEESSSSEEEEEETTTTE
T ss_pred             ---EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc--ccceeecc--ccCCccccceeEEccCCCEEeecccccc
Confidence               223344 889999999999999988888888877531  12222222  1123456889999999988877777888


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEE-e-CCeEEEEeCCCCcEEE---
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSA-S-GGKISIFSLETFQTLA---  539 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~-s-dg~I~iwd~~~~~~~~---  539 (701)
                      +..++......           .+|-........  ...........+++++..++.+ + .+.|..++........   
T Consensus       136 i~~~~~~~~~~-----------~~~~~~~~~~~~--~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~  202 (302)
T d2p4oa1         136 IWLIDVVQPSG-----------SIWLEHPMLARS--NSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPE  202 (302)
T ss_dssp             EEEEETTTTEE-----------EEEEECGGGSCS--STTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCE
T ss_pred             ceeeeccCCcc-----------eeEecCCcccee--eccCcccccccccccCCceeeecCCCCeEEeccccccccccccc
Confidence            87776533211           000000000000  0012223456677775555444 4 7999999876543221   


Q ss_pred             EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-eEEeecCCCCCeEEEEE---ecCCCEEEEEeCC
Q 005342          540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAY---SLSLNVLVSSGAD  607 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~v~~---spdg~~l~s~s~D  607 (701)
                      .+. .......++++++| ++++...++.|..++..... .+......-...++++|   +||++.|+.++..
T Consensus       203 ~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         203 IFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            111 23345679999999 77777888999999865432 12223323346899999   6688877655543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.74  E-value=1.4e-06  Score=88.88  Aligned_cols=159  Identities=12%  Similarity=0.055  Sum_probs=99.1

Q ss_pred             CCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeE--EeecccCCCCCCeEEEEec--
Q 005342          441 GGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV--MTNDIAADPKDSISCFALR--  515 (701)
Q Consensus       441 ~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~v~~l~~s--  515 (701)
                      ...+.++.|+|||+++++++. ...|.+|+...                    ++.+  ...............++|+  
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~--------------------~g~~~~~~~~~~~~~g~gPr~i~f~pd  203 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLA--------------------SGEVELVGSVDAPDPGDHPRWVAMHPT  203 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECT--------------------TSCEEEEEEEECSSTTCCEEEEEECTT
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccC--------------------CCceeeccceeecCCCCceEEEEECCC
Confidence            345789999999999888876 46777776522                    1211  1110112334578889998  


Q ss_pred             CCEEEEEe--CCeEEEEeCCCCcEE--E---EecC--------------CCCCeEEEEEcCCC-eEEEEeC-CC-----c
Q 005342          516 GSHLFSAS--GGKISIFSLETFQTL--A---TFAN--------------PPPIATYFILLPQD-LFAFGFD-DS-----S  567 (701)
Q Consensus       516 ~~~l~s~s--dg~I~iwd~~~~~~~--~---~~~~--------------~~~~i~~l~~spdg-~l~~gs~-dg-----~  567 (701)
                      ++++++..  +++|.+|++..++..  .   ....              .......+.++||| +++++.. +.     .
T Consensus       204 g~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~  283 (365)
T d1jofa_         204 GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGY  283 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCE
T ss_pred             CceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceE
Confidence            77776665  799999998765422  1   1110              01124678999999 6665532 22     3


Q ss_pred             EEEEeCCCCceEEe------ecCCCCCeEEEEEec-CCCEEEEE-eCCCeEEEEECCCCe
Q 005342          568 ILVHCPCTKKTKAK------LKGHQNRITCLAYSL-SLNVLVSS-GADAQLCVWDAVGWK  619 (701)
Q Consensus       568 I~iwd~~~~~~~~~------l~~h~~~V~~v~~sp-dg~~l~s~-s~D~~I~vwd~~~g~  619 (701)
                      |..|++.....+..      .........+++++| +|++|+.+ ..++.|.+|++....
T Consensus       284 i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         284 IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            77777654322211      111223567799998 89977655 567999999987653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.71  E-value=6e-06  Score=82.40  Aligned_cols=229  Identities=10%  Similarity=0.025  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC--CcEEEEecCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT--ATHKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d--g~i~vwd~~~  472 (701)
                      +..++|.++|++.++-...+.|..|+..    ++.......   ........+++++||+.+++...+  ....++.+  
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~----g~~~~~~~~---~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~--  112 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPE----TKEIKRPFV---SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA--  112 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTT----TCCEEEEEE---CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE--
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECC----CCeEEEEEe---CCCCCeeEEEECCCCCEEEEecCCCccceeEEEE--
Confidence            4578999999988888888999888876    444333222   134567899999999877665432  23333322  


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC-------CeEEEEeCCCCcEEEEecC
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG-------GKISIFSLETFQTLATFAN  543 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd-------g~I~iwd~~~~~~~~~~~~  543 (701)
                                       +..++.+...............+++.  |++.++...       +.+..++...+ .+..+..
T Consensus       113 -----------------~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~  174 (319)
T d2dg1a1         113 -----------------TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQ  174 (319)
T ss_dssp             -----------------CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEE
T ss_pred             -----------------cCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEee
Confidence                             33333322110111223456778888  665554322       34666665433 3333222


Q ss_pred             CCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEe-------ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342          544 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAK-------LKGHQNRITCLAYSLSLNVLVSSGADAQLCVW  613 (701)
Q Consensus       544 ~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~~~-------l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vw  613 (701)
                      .-...+.++|+|++  ++++-+..+.|+.||+... .....       ..........+++.++|++.++....+.|.+|
T Consensus       175 ~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~  254 (319)
T d2dg1a1         175 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVF  254 (319)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEE
Confidence            23345789999999  4566677889999987632 21111       11112235679999999988888889999999


Q ss_pred             ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      |. .|+.+.  .+. ++.....+...+++++|.|++..+++
T Consensus       255 ~p-~G~~l~--~i~-~P~~~~~~~~~~~~~~~~~~~~~~~~  291 (319)
T d2dg1a1         255 NK-RGYPIG--QIL-IPGRDEGHMLRSTHPQFIPGTNQLII  291 (319)
T ss_dssp             CT-TSCEEE--EEE-CTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred             CC-CCcEEE--EEe-CCCcCCCcCceeeeEEEeCCCCEEEE
Confidence            96 565443  233 33211111156789999998876665

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=4.9e-06  Score=80.35  Aligned_cols=191  Identities=9%  Similarity=-0.022  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  474 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  474 (701)
                      ...++++++|+.+++....+.+++++-.    ... ...  +. .......++++.++|+.+++-..+..+..++.    
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~----~~~-~~~--~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~----  126 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGS----NNQ-TVL--PF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAA----  126 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTC----SCC-EEC--CC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECT----
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeec----cce-eee--ee-eeeeecccccccccceeEeecccccccccccc----
Confidence            5578999999988887777766665543    221 111  11 12356789999999987666545565666533    


Q ss_pred             ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342          475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF  551 (701)
Q Consensus       475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l  551 (701)
                                       .......  ...........++++  |+.+++.. ++.|..+|...................+
T Consensus       127 -----------------~~~~~~~--~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi  187 (260)
T d1rwia_         127 -----------------GSKTQTV--LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGI  187 (260)
T ss_dssp             -----------------TCSSCEE--CCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEE
T ss_pred             -----------------ccceeee--eeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccc
Confidence                             2222111  111122345678887  67666655 7899999986554333222344556899


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342          552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  617 (701)
Q Consensus       552 ~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~  617 (701)
                      +++++| ++++....+.|..++..... ...+. ..-.....++++++|+++++-..+++|+..+...
T Consensus       188 ~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         188 AVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             EECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             eeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence            999999 88888888899999865443 22222 2334578999999999888777777777655443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.59  E-value=9.4e-06  Score=80.66  Aligned_cols=236  Identities=11%  Similarity=0.104  Sum_probs=140.4

Q ss_pred             eEEEEEcCCCCeEEEEcC-------CCcEEEEeccccCCCCceeEeecCC-CCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          395 SRESTSLPDADSAVCAKS-------LEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~-------d~~v~iw~~~~~~~~~~~~~l~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      ...++|.|+|++.++...       ++.|..|+..    ++....+..+. .........++|.++|+.++++...+.+.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~----~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK----TGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTT----TCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECC----CCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            567899999998876543       4668888876    44433322111 11123467899999999888887766677


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecc-cCCC-CCCeEEEEec--CCEEEEEe----------------CCe
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDI-AADP-KDSISCFALR--GSHLFSAS----------------GGK  526 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~-~~~~-~~~v~~l~~s--~~~l~s~s----------------dg~  526 (701)
                      ..+.                     +++....... ..+. -...++++++  |++.++-.                .|.
T Consensus        96 ~~~~---------------------~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~  154 (314)
T d1pjxa_          96 VVQT---------------------DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             EEET---------------------TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             EEeC---------------------CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCce
Confidence            7654                     2222111000 0000 1124567777  55544421                134


Q ss_pred             EEEEeCCCCcEEEEecCCCCCeEEEEEcCCC------eEEEEeCCCcEEEEeCCCCceE------EeecC-CCCCeEEEE
Q 005342          527 ISIFSLETFQTLATFANPPPIATYFILLPQD------LFAFGFDDSSILVHCPCTKKTK------AKLKG-HQNRITCLA  593 (701)
Q Consensus       527 I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg------~l~~gs~dg~I~iwd~~~~~~~------~~l~~-h~~~V~~v~  593 (701)
                      |..++. .++...... .-...+.++|+|++      ++++-+..+.|+.||+.....+      ..+.+ +......++
T Consensus       155 v~~~~~-dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia  232 (314)
T d1pjxa_         155 IYCFTT-DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEEECT-TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             EEEEee-cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeE
Confidence            555554 333333222 22234678888764      3344567788999987643222      12222 223456799


Q ss_pred             EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECC
Q 005342          594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP  666 (701)
Q Consensus       594 ~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~  666 (701)
                      +.++|++.++....+.|.+||...++..  ..+. .  ..    ...++++|.||++.|+. . .+|.|...++.
T Consensus       233 vD~~GnlyVa~~~~g~I~~~dp~~g~~~--~~i~-~--p~----~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         233 FDEDNNLLVANWGSSHIEVFGPDGGQPK--MRIR-C--PF----EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCS--EEEE-C--SS----SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EecCCcEEEEEcCCCEEEEEeCCCCEEE--EEEE-C--CC----CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            9999998888888899999999876532  2222 1  11    56789999999976554 4 57888888764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.53  E-value=1.8e-05  Score=78.52  Aligned_cols=209  Identities=9%  Similarity=0.039  Sum_probs=122.6

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCC-CCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSF-GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  473 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~-~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  473 (701)
                      -..++|.|+|..++++.....+...+.+    .+....+.....+. -.....+++.++|+..++-.. +....|+....
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~----g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~~~  147 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTD----GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYTRS  147 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETT----SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCCBT
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCC----CcEEEEEeccccccccCCCcEEEECCCCCEEEecCc-cCcccccccce
Confidence            4579999999988888776778888875    33211111111111 123567889999986555322 21111111000


Q ss_pred             CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC----EEEEEe--CCeEEEEeCCCCcEEE------
Q 005342          474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS----HLFSAS--GGKISIFSLETFQTLA------  539 (701)
Q Consensus       474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~----~l~s~s--dg~I~iwd~~~~~~~~------  539 (701)
                           .....-.+..++++. ..... .  ..-...+.++|+  ++    .|+++.  .+.|..||+.....+.      
T Consensus       148 -----~~~~~G~v~~~~~dg-~~~~~-~--~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~  218 (314)
T d1pjxa_         148 -----MQEKFGSIYCFTTDG-QMIQV-D--TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG  218 (314)
T ss_dssp             -----TSSSCEEEEEECTTS-CEEEE-E--EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred             -----eccCCceEEEEeecC-ceeEe-e--CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEE
Confidence                 000001122223332 22110 0  112234567786  32    455554  6899999875432221      


Q ss_pred             EecCC-CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECC
Q 005342          540 TFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAV  616 (701)
Q Consensus       540 ~~~~~-~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~-~l~s~s~D~~I~vwd~~  616 (701)
                      .+.+. ....-.+++.++| +.++....+.|++||.+.++.+..+.......++++|.||++ +.++.+.+++|...++.
T Consensus       219 ~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         219 HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            22221 2234689999999 767777889999999988877777766666789999999987 55777788999888876


Q ss_pred             C
Q 005342          617 G  617 (701)
Q Consensus       617 ~  617 (701)
                      .
T Consensus       299 ~  299 (314)
T d1pjxa_         299 R  299 (314)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.53  E-value=4e-05  Score=74.54  Aligned_cols=209  Identities=9%  Similarity=0.061  Sum_probs=142.4

Q ss_pred             CEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc-----CCCCCCeEEEEec--
Q 005342          443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA-----ADPKDSISCFALR--  515 (701)
Q Consensus       443 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~v~~l~~s--  515 (701)
                      ....++++|+|+.+++-..++.|++||.+.                      .++.. +.     .+.......+++.  
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G----------------------~~~~~-~~~~~~~~~~~~~p~~~~~~~~   80 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG----------------------RFKFQ-FGECGKRDSQLLYPNRVAVVRN   80 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS----------------------CEEEE-ECCBSSSTTCBSSEEEEEEETT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC----------------------CEEEE-ecccCCCccccccccccccccc
Confidence            468899999999777766678898886422                      21111 10     0111233445544  


Q ss_pred             -CCEEEEEe--CCeEEEEeCCCCcEEEEecC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec--CCCCC
Q 005342          516 -GSHLFSAS--GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNR  588 (701)
Q Consensus       516 -~~~l~s~s--dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~~  588 (701)
                       +..+++..  ++.|..++. .+.....+.. .......+++.++| .+++....+.+.+++. +++.+..+.  .+...
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~  158 (279)
T d1q7fa_          81 SGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEF  158 (279)
T ss_dssp             TTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSS
T ss_pred             ccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccc
Confidence             45555544  578888886 5666666642 34556899999999 7777777888999985 566666653  35567


Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC
Q 005342          589 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP  666 (701)
Q Consensus       589 V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~  666 (701)
                      ...+++.++++.+++....+.|++||.... ..  ..+.  ..+..   .....|++.|+|+.+++-  .++.|.+|+. 
T Consensus       159 ~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~-~~--~~~g--~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~~-  229 (279)
T d1q7fa_         159 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YL--RQIG--GEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ-  229 (279)
T ss_dssp             EEEEEECSSSEEEEEEGGGTEEEEEETTCC-EE--EEES--CTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT-
T ss_pred             cceeeeccceeEEeeeccccceeeeecCCc-ee--eeec--ccccc---cCCcccccccCCeEEEEECCCCcEEEEECC-
Confidence            889999999998888888999999997653 11  1111  11222   567899999999988773  3557999985 


Q ss_pred             CCceeeeeee------eeEEEEEee
Q 005342          667 TLNHTSQVLL------ISHIMFVQI  685 (701)
Q Consensus       667 ~g~~~~~l~~------i~~~~fs~~  685 (701)
                      +|+.+.++..      ..++++.|+
T Consensus       230 ~G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         230 DGQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             CCCEEEEEeCCCCCCCEeEEEEeCC
Confidence            7988887754      567777665

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.36  E-value=2.3e-05  Score=75.74  Aligned_cols=228  Identities=11%  Similarity=0.008  Sum_probs=126.1

Q ss_pred             EEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CC---cEEEEecCC
Q 005342          399 TSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TA---THKLWKWQS  472 (701)
Q Consensus       399 ~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg---~i~vwd~~~  472 (701)
                      ..+||  |+.+|..+. +.|.+.|+.    +++..+++.    +.+.+...+|||||+.|+.... ++   ...+|-   
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~----~g~~~~Lt~----~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~---   72 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLK----SGSTRKIVS----NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYF---   72 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETT----TCCEEEEEC----SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEE---
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECC----CCCEEEEec----CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEE---
Confidence            36799  999987755 667777887    676666553    4567889999999999987653 22   223332   


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccC----CCCCCeEEEEec--CCEEEEEe-C------CeEEEEeCCCCcEEE
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAA----DPKDSISCFALR--GSHLFSAS-G------GKISIFSLETFQTLA  539 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~v~~l~~s--~~~l~s~s-d------g~I~iwd~~~~~~~~  539 (701)
                                      ++..++.........    .........+|+  |+.++... .      ..+...+...+....
T Consensus        73 ----------------~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (281)
T d1k32a2          73 ----------------YNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP  136 (281)
T ss_dssp             ----------------EETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE
T ss_pred             ----------------EEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE
Confidence                            244555433210000    112244567787  77777653 1      245566665444322


Q ss_pred             EecCCCCCeEEEEEcCCC--eEEEEeCCC-----------cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEe-
Q 005342          540 TFANPPPIATYFILLPQD--LFAFGFDDS-----------SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-  605 (701)
Q Consensus       540 ~~~~~~~~i~~l~~spdg--~l~~gs~dg-----------~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s-  605 (701)
                      .   +....... +.+++  .++....+.           ................ .+........++++.  ++..+ 
T Consensus       137 ~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~  209 (281)
T d1k32a2         137 L---NLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHR--IYFITD  209 (281)
T ss_dssp             C---CSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTE--EEEEEC
T ss_pred             e---cCCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeecc-CCccccceeeeeccc--cceecc
Confidence            2   22222333 34444  444433222           1122222222222222 233445555666653  33333 


Q ss_pred             C--CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceee
Q 005342          606 A--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       606 ~--D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~  672 (701)
                      .  ...|+++|+.+++..   .+   ..+..   ..  ...|||||+.|+...++.|+++|+.+|+..+
T Consensus       210 ~~~~~~l~~~d~~g~~~~---~l---t~~~~---~~--~~~~SpDG~~I~f~~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         210 IDGFGQIYSTDLDGKDLR---KH---TSFTD---YY--PRHLNTDGRRILFSKGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             TTSSCEEEEEETTSCSCE---EC---CCCCS---SC--EEEEEESSSCEEEEETTEEEEECTTTCCEEE
T ss_pred             cccccceEEEeCCCCceE---Ee---ecCCC---cc--cccCcCCCCEEEEEeCCEEEEEECCCCCEEE
Confidence            2  346888898886422   22   22221   22  3468999999998888999999998887644

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.33  E-value=0.00012  Score=72.50  Aligned_cols=215  Identities=12%  Similarity=0.103  Sum_probs=133.2

Q ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE
Q 005342          442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  519 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l  519 (701)
                      ..+..++|.++|+..++-..++.|..|                     +++++..... + .........++++  |+++
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri---------------------~p~g~~~~~~-~-~~~~~~p~gla~~~dG~l~   96 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKI---------------------NPETKEIKRP-F-VSHKANPAAIKIHKDGRLF   96 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEE---------------------CTTTCCEEEE-E-ECSSSSEEEEEECTTSCEE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEE---------------------ECCCCeEEEE-E-eCCCCCeeEEEECCCCCEE
Confidence            345788999999865555557777776                     4455543321 1 1234567889998  6666


Q ss_pred             EEEe-C----CeEEEEeCCCCcEEEEecC--CCCCeEEEEEcCCC-eEEEEeC------CCcEEEEeCCCCceEEeecCC
Q 005342          520 FSAS-G----GKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGH  585 (701)
Q Consensus       520 ~s~s-d----g~I~iwd~~~~~~~~~~~~--~~~~i~~l~~spdg-~l~~gs~------dg~I~iwd~~~~~~~~~l~~h  585 (701)
                      ++.. +    +.+...+..++........  .......++++++| +.++...      .+.++.++...+. +..+...
T Consensus        97 va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~  175 (319)
T d2dg1a1          97 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQN  175 (319)
T ss_dssp             EEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEE
T ss_pred             EEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeec
Confidence            5543 2    3566666655554443332  13346789999999 5555432      2346666654433 3333223


Q ss_pred             CCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCC-eeeee--eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeE
Q 005342          586 QNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGW-KKLCS--KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI  660 (701)
Q Consensus       586 ~~~V~~v~~spdg~~l-~s~s~D~~I~vwd~~~g-~~~~~--~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I  660 (701)
                      -...+.++|+||++.| ++-+..++|+.|++... .....  ........+.    ...-.+++.++|++.++. ..+.|
T Consensus       176 ~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~----~~PdGl~vD~~G~l~Va~~~~g~V  251 (319)
T d2dg1a1         176 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH----EGPDSCCIDSDDNLYVAMYGQGRV  251 (319)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS----SEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             cceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc----cceeeeeEcCCCCEEEEEcCCCEE
Confidence            3456889999999865 55567889999998642 11111  1111011111    345689999999977775 68999


Q ss_pred             EEEECCCCceeeeeee----------eeEEEEEee
Q 005342          661 DVYEAPTLNHTSQVLL----------ISHIMFVQI  685 (701)
Q Consensus       661 ~iwd~~~g~~~~~l~~----------i~~~~fs~~  685 (701)
                      .+||. .|+.+..+..          +++++|.|.
T Consensus       252 ~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~  285 (319)
T d2dg1a1         252 LVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG  285 (319)
T ss_dssp             EEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             EEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCC
Confidence            99996 7998887753          577787654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.6e-05  Score=83.68  Aligned_cols=239  Identities=10%  Similarity=-0.010  Sum_probs=135.4

Q ss_pred             EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---------CCcEEEE
Q 005342          398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---------TATHKLW  468 (701)
Q Consensus       398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---------dg~i~vw  468 (701)
                      ..|.+++.++.. ..+|.+.+|++.    +++...+.-......-.+....|||||++++....         .+.+.++
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVE----TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGG----GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECC----CCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence            358888877654 556889999997    34333322111223346777889999999887654         2444555


Q ss_pred             ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEec-CCC
Q 005342          469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA-NPP  545 (701)
Q Consensus       469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~-~~~  545 (701)
                                           |..++..............+....||  |+.+|...++.|.+.+..++..++... +..
T Consensus        97 ---------------------d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~  155 (465)
T d1xfda1          97 ---------------------KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKE  155 (465)
T ss_dssp             ---------------------ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBT
T ss_pred             ---------------------EccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCc
Confidence                                 55555533211111233455667888  899999889999999988776554433 212


Q ss_pred             CCe-----------------EEEEEcCCC-eEEEEeC-CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC
Q 005342          546 PIA-----------------TYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA  606 (701)
Q Consensus       546 ~~i-----------------~~l~~spdg-~l~~gs~-dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~  606 (701)
                      ..+                 ..+.||||| .||.... +..+..+.+....     ......+..+.+..-|.--    .
T Consensus       156 ~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~~~~~Yp~~G~~n----p  226 (465)
T d1xfda1         156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKAGSEN----P  226 (465)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBTTSCC----C
T ss_pred             ceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccc-----ccccceeeeeeccccCCCC----C
Confidence            111                 467899999 7777653 3444444332110     0011122333332122110    1


Q ss_pred             CCeEEEEECCCCeeeeeeeeeeccC-CCCCCCCCeEEEEEcCCCCEEEEE-e----cCeEEEEECCCCceeeeee
Q 005342          607 DAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSI-H----EGQIDVYEAPTLNHTSQVL  675 (701)
Q Consensus       607 D~~I~vwd~~~g~~~~~~~l~~~~~-~~~~~~~~v~~v~~spdg~~l~sg-~----Dg~I~iwd~~~g~~~~~l~  675 (701)
                      ..++.++|+.++....   .. .+. ........+..+.|+|++++++.. .    ...+.++|..+|++...+.
T Consensus       227 ~~~l~v~d~~~~~~~~---~~-~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         227 SISLHVIGLNGPTHDL---EM-MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             EEEEEEEESSSSCCCE---EC-CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             ceeEEEEecCCCcEEE---EE-eccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence            1257888987764211   11 111 111111457889999999877763 2    2358889999998765543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.27  E-value=0.00041  Score=67.63  Aligned_cols=207  Identities=10%  Similarity=-0.057  Sum_probs=130.5

Q ss_pred             EEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe
Q 005342          446 RLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS  523 (701)
Q Consensus       446 ~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s  523 (701)
                      +..|++....|.-.. ..+.|..|                     |+.+++.....    ....+.++++. +..++.++
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~---------------------d~~~g~~~~~~----~~~~~~~i~~~~dg~l~va~   76 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHEL---------------------HLASGRKTVHA----LPFMGSALAKISDSKQLIAS   76 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEE---------------------ETTTTEEEEEE----CSSCEEEEEEEETTEEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEE---------------------ECCCCeEEEEE----CCCCcEEEEEecCCCEEEEE
Confidence            455776555444443 34566665                     55666543211    23467888887 55555566


Q ss_pred             CCeEEEEeCCCCcEEEEecCC----CCCeEEEEEcCCC-eEEEEeC----CCcEEEEeCCCCceEEeecCCCCCeEEEEE
Q 005342          524 GGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFD----DSSILVHCPCTKKTKAKLKGHQNRITCLAY  594 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~----~~~i~~l~~spdg-~l~~gs~----dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~  594 (701)
                      ...+..+|..+++........    ...++.+.+.|+| +.++...    .+.-.+|.+..++......+ -...+.++|
T Consensus        77 ~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~  155 (295)
T d2ghsa1          77 DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICF  155 (295)
T ss_dssp             TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEE
T ss_pred             eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeee
Confidence            556999999988754433211    2246889999999 4444322    22445666666766555443 335688999


Q ss_pred             ecCCCEE-EEEeCCCeEEEEECCCC--eeeeee-eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342          595 SLSLNVL-VSSGADAQLCVWDAVGW--KKLCSK-FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN  669 (701)
Q Consensus       595 spdg~~l-~s~s~D~~I~vwd~~~g--~~~~~~-~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~  669 (701)
                      +|+++.+ ++.+..+.|+.+++...  ...... ...... +..   +....+++.++|++.++. ..+.|..||. .|+
T Consensus       156 s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~-~~~---g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~  230 (295)
T d2ghsa1         156 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIK---GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGN  230 (295)
T ss_dssp             CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSS---SEEEEEEECTTSCEEEEEETTTEEEEECT-TCC
T ss_pred             cCCCceEEEeecccceeeEeeecccccccccceEEEeccC-ccc---ccccceEEcCCCCEEeeeeCCCceEEecC-CCc
Confidence            9999855 55667889999987532  111111 111121 111   567889999999988776 5778999995 788


Q ss_pred             eeeeeee----eeEEEEE
Q 005342          670 HTSQVLL----ISHIMFV  683 (701)
Q Consensus       670 ~~~~l~~----i~~~~fs  683 (701)
                      .+..+.-    +++++|-
T Consensus       231 ~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         231 HIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             EEEEEECSCSBEEEEEEE
T ss_pred             EeeEecCCCCceEEEEEe
Confidence            8888764    8888885

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.26  E-value=0.00047  Score=67.25  Aligned_cols=215  Identities=12%  Similarity=0.058  Sum_probs=134.6

Q ss_pred             EEEEcCCC-CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342          397 ESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  475 (701)
Q Consensus       397 ~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  475 (701)
                      +..|++.. .+..+--..+.|.-||..    +++...+.+     ...+.++++.++|..+++ +.+ .+..+|      
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~----~g~~~~~~~-----~~~~~~i~~~~dg~l~va-~~~-gl~~~d------   84 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLA----SGRKTVHAL-----PFMGSALAKISDSKQLIA-SDD-GLFLRD------   84 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETT----TTEEEEEEC-----SSCEEEEEEEETTEEEEE-ETT-EEEEEE------
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECC----CCeEEEEEC-----CCCcEEEEEecCCCEEEE-EeC-ccEEee------
Confidence            57788754 455555567889999987    665544443     456889999999976554 554 466664      


Q ss_pred             cccccccceeeEEeeCCCCeEEee-ccc-CCCCCCeEEEEec--CCEEEEEe-C----CeEEEEeCCCCcEEEEecCCCC
Q 005342          476 SLEEENVNMESQLYQPSSKLVMTN-DIA-ADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFANPPP  546 (701)
Q Consensus       476 ~~g~~~~~~~i~~~d~~~~~~~~~-~~~-~~~~~~v~~l~~s--~~~l~s~s-d----g~I~iwd~~~~~~~~~~~~~~~  546 (701)
                                     +.+++.... ... ......+.++.+.  |++.++.. .    +.-.+|.+..++...... .-.
T Consensus        85 ---------------~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~  148 (295)
T d2ghsa1          85 ---------------TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DIS  148 (295)
T ss_dssp             ---------------TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EES
T ss_pred             ---------------cccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccC
Confidence                           455542211 011 1122356777777  66544432 2    345666666665544443 233


Q ss_pred             CeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC------c--eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342          547 IATYFILLPQD--LFAFGFDDSSILVHCPCTK------K--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV  616 (701)
Q Consensus       547 ~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~------~--~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~  616 (701)
                      ....+++++++  ++++.+..+.|+.|++...      +  ....+.+..+....+++..+|++.++.-..+.|..||. 
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-  227 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-  227 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-
Confidence            45789999999  5667777889999987431      1  11223344556788999999998877777889999996 


Q ss_pred             CCeeeeeeeeeeccCCCCCCCCCeEEEEEc-CCCCEEEE
Q 005342          617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFH-PDQIHLLS  654 (701)
Q Consensus       617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s-pdg~~l~s  654 (701)
                      .|+..  ..+. ++.      ..+++++|- ||.+.|++
T Consensus       228 ~G~~~--~~i~-lP~------~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         228 DGNHI--ARYE-VPG------KQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             TCCEE--EEEE-CSC------SBEEEEEEESTTSCEEEE
T ss_pred             CCcEe--eEec-CCC------CceEEEEEeCCCCCEEEE
Confidence            45433  2333 221      457999995 77666654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.19  E-value=5.5e-05  Score=72.90  Aligned_cols=192  Identities=6%  Similarity=-0.025  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCeEEEEcC----CC--cEEEEeccccCCCCceeEeecCCC---CCCCCEEEEEEecCCCEEEEEECCC--
Q 005342          395 SRESTSLPDADSAVCAKS----LE--KSVNLKLQLINEPSECRTLLLPDN---SFGGRVVRLIYSHSGDFLVALTQTA--  463 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~----d~--~v~iw~~~~~~~~~~~~~l~~~~~---~~~~~v~~l~~spdg~~l~s~s~dg--  463 (701)
                      +...+|||||+.||....    +.  .+.+++..    ++....++....   ..........|+|||+.++......  
T Consensus        43 ~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~----~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  118 (281)
T d1k32a2          43 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE----NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF  118 (281)
T ss_dssp             EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT----TTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSS
T ss_pred             ccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec----CCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCC
Confidence            778999999999986532    22  35555655    555555432110   1123456788999999887754421  


Q ss_pred             ----cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEE-Ee-C-----------C
Q 005342          464 ----THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFS-AS-G-----------G  525 (701)
Q Consensus       464 ----~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s-~s-d-----------g  525 (701)
                          .+...                     +...+....     .+........+. +..++. .. +           .
T Consensus       119 ~~~~~~~~~---------------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (281)
T d1k32a2         119 SSMTCLYRV---------------------ENDGINFVP-----LNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTR  172 (281)
T ss_dssp             TTCCEEEEE---------------------EGGGTEEEE-----CCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTC
T ss_pred             ccceeeeee---------------------cCCCceeEE-----ecCCccceeeecCCCeEEEeeccccceeeeeccCCc
Confidence                12222                     333333221     111222222233 322222 21 1           1


Q ss_pred             eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCC--CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342          526 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~d--g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s  603 (701)
                      ............. .............++++..+.....+  ..|+++|+.+++..+ +..+.. .....|+|||+.|+.
T Consensus       173 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~-~~~~~~SpDG~~I~f  249 (281)
T d1k32a2         173 GKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK-HTSFTD-YYPRHLNTDGRRILF  249 (281)
T ss_dssp             CEEEEEEETTEEE-EEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEE-CCCCCS-SCEEEEEESSSCEEE
T ss_pred             ceeeeecccccee-eccCCccccceeeeeccccceecccccccceEEEeCCCCceEE-eecCCC-cccccCcCCCCEEEE
Confidence            1122222222222 22223444556667766533333333  368888987766544 332322 233468999998876


Q ss_pred             EeCCCeEEEEECCCCee
Q 005342          604 SGADAQLCVWDAVGWKK  620 (701)
Q Consensus       604 ~s~D~~I~vwd~~~g~~  620 (701)
                      .. ++.|+++|+.+|+.
T Consensus       250 ~~-~~~l~~~d~~~g~~  265 (281)
T d1k32a2         250 SK-GGSIYIFNPDTEKI  265 (281)
T ss_dssp             EE-TTEEEEECTTTCCE
T ss_pred             Ee-CCEEEEEECCCCCE
Confidence            44 68899999999863

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.66  E-value=0.001  Score=66.23  Aligned_cols=144  Identities=10%  Similarity=0.027  Sum_probs=96.9

Q ss_pred             CCEEEEEe--CCeEEEEeCCCCcEEEEecC-CCCCeEEEEEcCCC---eEEEEeCCC------------------cEEEE
Q 005342          516 GSHLFSAS--GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD---LFAFGFDDS------------------SILVH  571 (701)
Q Consensus       516 ~~~l~s~s--dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~spdg---~l~~gs~dg------------------~I~iw  571 (701)
                      |+++++..  ++.|.+.|+++.+..+.+.. ....+..++..+++   +++.++++.                  .+..+
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            77888877  79999999999988664443 34566777776655   888877643                  36778


Q ss_pred             eCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---------------eEEEEEC---------------------
Q 005342          572 CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---------------QLCVWDA---------------------  615 (701)
Q Consensus       572 d~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---------------~I~vwd~---------------------  615 (701)
                      |..+.+....... .+....++++|+|+++++.+.+.               .+.+++.                     
T Consensus       179 D~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV  257 (459)
T d1fwxa2         179 DADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  257 (459)
T ss_dssp             ETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             ecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence            9888887766553 23466789999999998877431               2334443                     


Q ss_pred             --CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCC
Q 005342          616 --VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT  667 (701)
Q Consensus       616 --~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~  667 (701)
                        +...  ....+..++.+     .....+..+|||++++++  -+.++.|+|+++
T Consensus       258 D~~~~~--~~~v~~yIPVp-----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         258 DGRKEA--SSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             ECSGG----CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             cccccC--CcceeEEEecC-----CCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence              2210  00111112222     334678999999999985  699999999963

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.034  Score=52.44  Aligned_cols=232  Identities=10%  Similarity=0.001  Sum_probs=136.7

Q ss_pred             EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCcccccccccee
Q 005342          407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNME  485 (701)
Q Consensus       407 l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~  485 (701)
                      |+.+.. ..|+-.++.    +.....+. +   ....+.++.|.+..+.+.-... ++.|...++....           
T Consensus         4 Ll~s~~-~~I~~~~l~----~~~~~~~~-~---~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~-----------   63 (266)
T d1ijqa1           4 LFFTNR-HEVRKMTLD----RSEYTSLI-P---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH-----------   63 (266)
T ss_dssp             EEEECB-SSEEEEETT----SCCCEEEE-C---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------
T ss_pred             EEEECC-CeEEEEECC----CCcceeee-C---CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCC-----------
Confidence            344443 357777876    44333322 1   3456789999998888777654 4556555442210           


Q ss_pred             eEEeeCCCC-eEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--e
Q 005342          486 SQLYQPSSK-LVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--L  558 (701)
Q Consensus       486 i~~~d~~~~-~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~  558 (701)
                           ..+. +.+   + ......+..++++  ++.|..+.  .+.|.+.++........+.........++++|..  .
T Consensus        64 -----~~~~~~~~---~-~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~l  134 (266)
T d1ijqa1          64 -----GVSSYDTV---I-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM  134 (266)
T ss_dssp             ---------CEEE---E-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred             -----CCcceEEE---E-eCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeE
Confidence                 0011 111   1 1223446677876  66666655  5899999997665555555455667899999865  3


Q ss_pred             EEEE-eCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCC
Q 005342          559 FAFG-FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE  636 (701)
Q Consensus       559 l~~g-s~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~  636 (701)
                      +.+. +..+.|...++............-...+.+++.+.++.|..+ +..+.|...++......  ..+. .. ...  
T Consensus       135 y~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~--~~~~-~~-~~~--  208 (266)
T d1ijqa1         135 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--TILE-DE-KRL--  208 (266)
T ss_dssp             EEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEEE-CT-TTT--
T ss_pred             EEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE--EEEe-CC-Ccc--
Confidence            3333 234578888876544433333333567899999987766655 55789999998764321  1122 11 111  


Q ss_pred             CCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCceeeeeee
Q 005342          637 TTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       637 ~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                       ....++++.  +..|..+  .++.|...+..+|+....+..
T Consensus       209 -~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         209 -AHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             -SSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             -cccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence             334567766  3445543  678888888888876665554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=0.037  Score=52.07  Aligned_cols=200  Identities=10%  Similarity=0.027  Sum_probs=123.4

Q ss_pred             CCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC
Q 005342          441 GGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  517 (701)
Q Consensus       441 ~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~  517 (701)
                      ...+.+++|.+..+.+..... ++.|...++++                   ...+.+   + ......+.+++++  ++
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g-------------------~~~~~v---~-~~~~~~p~~iAvD~~~~   91 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-------------------GEPTTI---I-RQDLGSPEGIALDHLGR   91 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-------------------CCCEEE---E-CTTCCCEEEEEEETTTT
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEccc-------------------CCcEEE---E-EeccccccEEEEeccCC
Confidence            345778999988887776654 56676665522                   122222   1 1223467888888  66


Q ss_pred             EEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe-C--CCcEEEEeCCCCceEEeecCCCCCeEE
Q 005342          518 HLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF-D--DSSILVHCPCTKKTKAKLKGHQNRITC  591 (701)
Q Consensus       518 ~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs-~--dg~I~iwd~~~~~~~~~l~~h~~~V~~  591 (701)
                      .|..+.  .+.|.+.++........+.........++++|.+ ++.... .  .+.|..-++............-...+.
T Consensus        92 ~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~g  171 (263)
T d1npea_          92 TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG  171 (263)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEE
T ss_pred             eEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccce
Confidence            776665  5899999986554333333334567899999977 444332 2  234655566544333323323346789


Q ss_pred             EEEecCCCEEEEE-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCC
Q 005342          592 LAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL  668 (701)
Q Consensus       592 v~~spdg~~l~s~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g  668 (701)
                      +++.+.++.|..+ ...++|...|+..+...  ..+.    +.    ....++++.  +..|...  ..+.|...|..+|
T Consensus       172 laiD~~~~~lYw~d~~~~~I~~~~~~g~~~~--~v~~----~~----~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--KVLE----GL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEE--EEEE----CC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEeecCcEEEEEeCCCCEEEEEECCCCCeE--EEEC----CC----CCcEEEEEE--CCEEEEEECCCCEEEEEECCCC
Confidence            9999887777554 56789999999774321  1122    22    223567775  4455543  6788999999999


Q ss_pred             ceeeeee
Q 005342          669 NHTSQVL  675 (701)
Q Consensus       669 ~~~~~l~  675 (701)
                      +.++.+.
T Consensus       240 ~~~~~~~  246 (263)
T d1npea_         240 KEMDTFH  246 (263)
T ss_dssp             EEEEEEC
T ss_pred             ccceEEC
Confidence            8877664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.47  E-value=0.69  Score=48.53  Aligned_cols=141  Identities=9%  Similarity=-0.054  Sum_probs=86.7

Q ss_pred             eEEEEeCCCCcEEEEecCCC---------CCeEEEE-EcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCCC--C--
Q 005342          526 KISIFSLETFQTLATFANPP---------PIATYFI-LLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQ--N--  587 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~~~~---------~~i~~l~-~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~--~--  587 (701)
                      .|.-.|.++|+.+..++...         .....+. ...+|    .++.+..+|.++++|..+|+++...+...  .  
T Consensus       279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~  358 (596)
T d1w6sa_         279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF  358 (596)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccc
Confidence            47788999999988775321         1112222 23344    67888999999999999998764321000  0  


Q ss_pred             -----------------------------------CeEEEEEecCCCEEEEEeC--------------------------
Q 005342          588 -----------------------------------RITCLAYSLSLNVLVSSGA--------------------------  606 (701)
Q Consensus       588 -----------------------------------~V~~v~~spdg~~l~s~s~--------------------------  606 (701)
                                                         .-...+++|+..+++....                          
T Consensus       359 ~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~  438 (596)
T d1w6sa_         359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM  438 (596)
T ss_dssp             EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccc
Confidence                                               0022466676555443321                          


Q ss_pred             -------------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342          607 -------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS  672 (701)
Q Consensus       607 -------------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~  672 (701)
                                   -|.|.-||+.+|+..-.....          .+..+-..+..|.+++.| .||.++-+|..+|+.+-
T Consensus       439 ~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~----------~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW  508 (596)
T d1w6sa_         439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----------FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW  508 (596)
T ss_dssp             EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccCcccCcccCCCcceEEEEeCCCCceecccCCC----------CCCccceeEecCCEEEEECCCCeEEEEECCCCcEee
Confidence                         146888888888654332222          111111223356777777 79999999999999998


Q ss_pred             eeee
Q 005342          673 QVLL  676 (701)
Q Consensus       673 ~l~~  676 (701)
                      ++..
T Consensus       509 ~~~~  512 (596)
T d1w6sa_         509 KFKI  512 (596)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8765

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.41  E-value=0.58  Score=46.91  Aligned_cols=239  Identities=10%  Similarity=0.004  Sum_probs=123.3

Q ss_pred             eEEEEEcCCCCeEEEE-----cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC------
Q 005342          395 SRESTSLPDADSAVCA-----KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA------  463 (701)
Q Consensus       395 V~~l~~spdg~~l~s~-----s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg------  463 (701)
                      +...++|||++++|.+     +....+++.|+.    +++.....++    ......++|++|++.|+....+.      
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~----tg~~~~~~i~----~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD----GAKELPDVLE----RVKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETT----TTEEEEEEEE----EECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccC----cceecccccc----cccccceEEcCCCCEEEEEEeccccCccc
Confidence            5567889999999854     223468899998    6655443331    11224678999999887654321      


Q ss_pred             ----------cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe----CCe-
Q 005342          464 ----------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS----GGK-  526 (701)
Q Consensus       464 ----------~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s----dg~-  526 (701)
                                .+..+.+.+.                 .....++.. . ......+..+..+  +++++...    ++. 
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~-----------------~~~d~~v~~-e-~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~  259 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTD-----------------QSEDILCAE-F-PDEPKWMGGAELSDDGRYVLLSIREGCDPVN  259 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSC-----------------GGGCEEEEC-C-TTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred             ccccccCCcceEEEEECCCC-----------------ccccccccc-c-ccCCceEEeeeccCCcceeeEEeeccCCccE
Confidence                      3444433221                 111122211 0 1122345556666  67765322    233 


Q ss_pred             -EEEEeCCCCc--------EEEEecCCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCce---EEeecCCCCCeE
Q 005342          527 -ISIFSLETFQ--------TLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKT---KAKLKGHQNRIT  590 (701)
Q Consensus       527 -I~iwd~~~~~--------~~~~~~~~~~~i~~l~~spdg-~l~~gs~---dg~I~iwd~~~~~~---~~~l~~h~~~V~  590 (701)
                       +.+.|+....        ....+......... ..+.++ +++....   ++.|...++.....   ...+..+...+.
T Consensus       260 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~  338 (430)
T d1qfma1         260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL  338 (430)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEE
T ss_pred             EEEEeeCCCcccccccccceeEeecccccceEE-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCccee
Confidence             4555543321        11222222223333 233333 3333322   35677777765422   222333555555


Q ss_pred             EEEEecCCCEEEEE-eCCC--eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE---E--ecCeEEE
Q 005342          591 CLAYSLSLNVLVSS-GADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I--HEGQIDV  662 (701)
Q Consensus       591 ~v~~spdg~~l~s~-s~D~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s---g--~Dg~I~i  662 (701)
                      .-.++..+.+|+.. -.++  .|++++..+++...   +. .+ ..    +.|..+...++...+..   |  .-.++.-
T Consensus       339 ~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~---~~-~~-~~----~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~  409 (430)
T d1qfma1         339 EWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLK---IF-PL-EV----GSVVGYSGQKKDTEIFYQFTSFLSPGIIYH  409 (430)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEE---EE-CC-CS----SEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred             eeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEE---ec-CC-CC----ceEeeccCCCCCCEEEEEEcCCCCCCeEEE
Confidence            44555555555544 4554  68999999875322   21 11 11    55666666666655443   2  3478999


Q ss_pred             EECCCCce
Q 005342          663 YEAPTLNH  670 (701)
Q Consensus       663 wd~~~g~~  670 (701)
                      +|+.+|+.
T Consensus       410 ~Dl~t~~~  417 (430)
T d1qfma1         410 CDLTKEEL  417 (430)
T ss_dssp             EETTSSSC
T ss_pred             EECCCCCc
Confidence            99998864

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.32  E-value=0.37  Score=50.49  Aligned_cols=142  Identities=9%  Similarity=-0.081  Sum_probs=86.6

Q ss_pred             CeEEEEeCCCCcEEEEecCCCC---------CeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCC------
Q 005342          525 GKISIFSLETFQTLATFANPPP---------IATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGH------  585 (701)
Q Consensus       525 g~I~iwd~~~~~~~~~~~~~~~---------~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h------  585 (701)
                      ..+.-.|.++|+.+..++....         .........++    .++.++.+|.++++|..+|+.+...+..      
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            4677889999998887763221         11222233344    5678899999999999999876422110      


Q ss_pred             -------------------------------CCCe--EEEEEecCCCEEEEEeCC-------------------------
Q 005342          586 -------------------------------QNRI--TCLAYSLSLNVLVSSGAD-------------------------  607 (701)
Q Consensus       586 -------------------------------~~~V--~~v~~spdg~~l~s~s~D-------------------------  607 (701)
                                                     .+..  ...+++|+..+++....+                         
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                                           0000  125778877766543322                         


Q ss_pred             ------------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeee
Q 005342          608 ------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       608 ------------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l  674 (701)
                                  |.|.-+|+.+|+..-.....   ....   +.+    .+-.+.++++| .|+.++-+|.++|+.+-++
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~---~~~~---~g~----l~TagglVf~G~~dg~l~A~Da~tGe~lW~~  501 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---FAAW---GGT----LYTKGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEES---SCCC---SBC----EEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCC---CCCC---cce----eEecCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence                        46777888887654333222   0000   111    12235566666 7999999999999999877


Q ss_pred             ee
Q 005342          675 LL  676 (701)
Q Consensus       675 ~~  676 (701)
                      ..
T Consensus       502 ~l  503 (571)
T d2ad6a1         502 KM  503 (571)
T ss_dssp             EC
T ss_pred             EC
Confidence            65

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.28  E-value=0.43  Score=46.71  Aligned_cols=238  Identities=7%  Similarity=-0.063  Sum_probs=114.6

Q ss_pred             EEEEcCCCCeEEEEcCC-CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC------CcEEEEe
Q 005342          397 ESTSLPDADSAVCAKSL-EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT------ATHKLWK  469 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d-~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d------g~i~vwd  469 (701)
                      ..++.+||++++.|+.+ ..+.+||..    +.......  .-.....-.+.+..+||+.++.|+.+      ..+.+||
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~----~~~w~~~~--~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSS----SDSWIPGP--DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGG----GTEEEECC--CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCc----cCcccccc--cccccccccceeeecCCceeeeccccccccccceeeeec
Confidence            56788999999998765 689999987    44333322  11112223456777899988888753      3577777


Q ss_pred             cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEec--C--
Q 005342          470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA--N--  543 (701)
Q Consensus       470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~--~--  543 (701)
                      ..++............   .....+...   .  ........+... |+.++.+. .+.+.++|..+......-.  .  
T Consensus       154 ~~~~~W~~~~~~~~~~---~~~~~~~~~---~--~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (387)
T d1k3ia3         154 PSSKTWTSLPNAKVNP---MLTADKQGL---Y--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR  225 (387)
T ss_dssp             TTTTEEEEETTSCSGG---GCCCCTTGG---G--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT
T ss_pred             CCCCceeecCCCcccc---cccccccce---e--eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCc
Confidence            6554320000000000   000000000   0  011122222233 66666666 6777888877664322111  0  


Q ss_pred             --CCC--CeEEEEEc-CCC-eEEEEeCCC--------cEEEEeCCC---Cce-EEeecC--CCCCeEEEEEecCCCEEEE
Q 005342          544 --PPP--IATYFILL-PQD-LFAFGFDDS--------SILVHCPCT---KKT-KAKLKG--HQNRITCLAYSLSLNVLVS  603 (701)
Q Consensus       544 --~~~--~i~~l~~s-pdg-~l~~gs~dg--------~I~iwd~~~---~~~-~~~l~~--h~~~V~~v~~spdg~~l~s  603 (701)
                        +..  .-.++.+. .++ .++.|+...        ...+.+...   ... ......  +...-.+.+..+||++++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~  305 (387)
T d1k3ia3         226 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFIT  305 (387)
T ss_dssp             EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEE
T ss_pred             ccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEE
Confidence              011  11233332 345 555554321        233333322   111 111111  1112234455689999888


Q ss_pred             EeCC-----------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342          604 SGAD-----------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI  655 (701)
Q Consensus       604 ~s~D-----------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg  655 (701)
                      |+.+           .++.+||..+++-..   +..+....    ..-......+||+.++.|
T Consensus       306 GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~---~~~~~~~R----~~Hs~a~l~~dG~v~v~G  361 (387)
T d1k3ia3         306 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYK---QNPNSIVR----VYHSISLLLPDGRVFNGG  361 (387)
T ss_dssp             CCBSBCCTTCCCSBCCCCEEEEGGGTEEEE---CCCCSSCC----CTTEEEEECTTSCEEEEE
T ss_pred             CCcccCccCCCCcEeceEEEEECCCCeEEE---CCCCCCcc----cceEEEEECCCCEEEEEe
Confidence            8743           157899998864222   22111111    111234467999999886

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.15  E-value=0.53  Score=43.91  Aligned_cols=212  Identities=11%  Similarity=0.093  Sum_probs=118.5

Q ss_pred             CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEecc
Q 005342          343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQ  422 (701)
Q Consensus       343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~  422 (701)
                      ..++.++|+++.+.+...             .                -...|..=.|-.+ +.|+..+. ..|+.|+++
T Consensus        82 g~~LQiFnletK~klks~-------------~----------------~~e~VvfWkWis~-~~L~lVT~-taVYHW~~~  130 (327)
T d1utca2          82 GKTLQIFNIEMKSKMKAH-------------T----------------MTDDVTFWKWISL-NTVALVTD-NAVYHWSME  130 (327)
T ss_dssp             TTEEEEEETTTTEEEEEE-------------E----------------CSSCCCEEEESSS-SEEEEECS-SEEEEEESS
T ss_pred             CCeEEEEehhHhhhhceE-------------E----------------cCCCcEEEEecCC-CEEEEEcC-CceEEEccc
Confidence            568999999988877761             0                1112444556544 34444444 579999996


Q ss_pred             ccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---C----CcEEEEecCCCCccccccccceeeEEeeCCCCe
Q 005342          423 LINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---T----ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL  495 (701)
Q Consensus       423 ~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---d----g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~  495 (701)
                      ....+.  +.+.....-....|..-..+++.++++..+-   +    |.+.+|..                     +.+.
T Consensus       131 g~s~P~--k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~---------------------er~~  187 (327)
T d1utca2         131 GESQPV--KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV---------------------DRKV  187 (327)
T ss_dssp             SSCCCE--EEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET---------------------TTTE
T ss_pred             CCCCch--hhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEe---------------------ccCc
Confidence            322222  2211111112467888888899998775542   2    45555544                     3332


Q ss_pred             EEeecccCCCCCCeEEEEecC-----CEEEEEe----CCeEEEEeCCCCc--------E-EEEecCC---CCCeEEEEEc
Q 005342          496 VMTNDIAADPKDSISCFALRG-----SHLFSAS----GGKISIFSLETFQ--------T-LATFANP---PPIATYFILL  554 (701)
Q Consensus       496 ~~~~~~~~~~~~~v~~l~~s~-----~~l~s~s----dg~I~iwd~~~~~--------~-~~~~~~~---~~~i~~l~~s  554 (701)
                      -..  + .+|......+.+.|     ..++.+.    .+.+++.++.+..        . +..+-.+   .+-.-++.+|
T Consensus       188 sQ~--i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs  264 (327)
T d1utca2         188 SQP--I-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS  264 (327)
T ss_dssp             EEE--E-CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE
T ss_pred             Ccc--c-cceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee
Confidence            111  1 24433333333321     1222222    3789999886421        1 1111111   3334678888


Q ss_pred             CCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342          555 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC  611 (701)
Q Consensus       555 pdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~  611 (701)
                      +.. .+..-+.-|.|++||+.++.++..-+--...|...+-+.+..=+++...+|.|.
T Consensus       265 ~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         265 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            877 888889999999999999999876554455666555444444455555666554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.13  E-value=0.28  Score=48.42  Aligned_cols=133  Identities=9%  Similarity=-0.058  Sum_probs=80.4

Q ss_pred             eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC---------------cEEEEeC----------------
Q 005342          526 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS---------------SILVHCP----------------  573 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg---------------~I~iwd~----------------  573 (701)
                      .+.++|..+++....+.. ......+.++|+| ++++.+.+.               .+.+++.                
T Consensus       174 ~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            467889998887776653 3356789999999 777766432               2333332                


Q ss_pred             -------CCC---ceEEeecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCe------eeeeeee-eeccCCCCC
Q 005342          574 -------CTK---KTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWK------KLCSKFL-HSFQTGLVP  635 (701)
Q Consensus       574 -------~~~---~~~~~l~~h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~g~------~~~~~~l-~~~~~~~~~  635 (701)
                             ++.   ..+..+... .....+..+|||+++++++ .+.++.|+|++.-.      ......+ ....-|   
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg---  328 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG---  328 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC---
T ss_pred             CceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC---
Confidence                   211   111122211 2245789999999887554 58899999997411      0000111 111112   


Q ss_pred             CCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC
Q 005342          636 ETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP  666 (701)
Q Consensus       636 ~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~  666 (701)
                        -.-..-+|..+|. ..++  -|..|.-|++.
T Consensus       329 --lgPLht~fd~~g~-aytslfids~v~kw~~~  358 (459)
T d1fwxa2         329 --LGPLHTAFDGRGN-AYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             --SCEEEEEECTTSE-EEEEETTTTEEEEEEHH
T ss_pred             --cCccccccCCCce-EEEEeeccceEEEEecc
Confidence              3456778988884 5555  69999999984

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.11  E-value=0.55  Score=43.76  Aligned_cols=225  Identities=12%  Similarity=0.094  Sum_probs=133.5

Q ss_pred             CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC
Q 005342          413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS  492 (701)
Q Consensus       413 d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~  492 (701)
                      ...|.|-|+.+....  .++   |.     ...+.-.+|..+.|+.-+ ...+.++|+                     +
T Consensus        44 ~~~VvIidl~n~~~~--~Rr---pi-----~AdsAIMhP~~~IiALra-g~~LQiFnl---------------------e   91 (327)
T d1utca2          44 QAQVVIIDMNDPSNP--IRR---PI-----SADSAIMNPASKVIALKA-GKTLQIFNI---------------------E   91 (327)
T ss_dssp             EEEEEEEETTSTTSC--EEE---EC-----CCSEEEECSSSSEEEEEE-TTEEEEEET---------------------T
T ss_pred             CceEEEEECCCCCcc--eec---cc-----chhhhhcCCCCcEEEEec-CCeEEEEeh---------------------h
Confidence            357888888742211  122   11     122344678877665544 567888866                     4


Q ss_pred             CCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCC-cEEEEecCC----CCCeEEEEEcCCC--eEEEE--
Q 005342          493 SKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETF-QTLATFANP----PPIATYFILLPQD--LFAFG--  562 (701)
Q Consensus       493 ~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~-~~~~~~~~~----~~~i~~l~~spdg--~l~~g--  562 (701)
                      +.+.+.. .  ....+|.-..|- .+.|+..++..|+-|+++.. .+.+.+..|    ...|..-..++++  ++++|  
T Consensus        92 tK~klks-~--~~~e~VvfWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~  168 (327)
T d1utca2          92 MKSKMKA-H--TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGIS  168 (327)
T ss_dssp             TTEEEEE-E--ECSSCCCEEEESSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEE
T ss_pred             Hhhhhce-E--EcCCCcEEEEecCCCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEe
Confidence            4443321 1  123467677777 88999999999999999543 456666555    3467778888888  33333  


Q ss_pred             eCC----CcEEEEeCCCCceEEeecCCCCCeEEEEEecCC---CEEEEE---eCCCeEEEEECCCCe---e-eeeeeeee
Q 005342          563 FDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---NVLVSS---GADAQLCVWDAVGWK---K-LCSKFLHS  628 (701)
Q Consensus       563 s~d----g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg---~~l~s~---s~D~~I~vwd~~~g~---~-~~~~~l~~  628 (701)
                      ..+    |.+.+|..+ .+.-+.+.||.+....+....+.   +.++.+   ...+++.|-++....   . ...+... 
T Consensus       169 ~~~~~i~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vd-  246 (327)
T d1utca2         169 AQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD-  246 (327)
T ss_dssp             EETTEEEEEEEEEETT-TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEE-
T ss_pred             cCCCceeEEEEEEEec-cCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEE-
Confidence            233    578999965 44567788886654444332211   233332   223688888886521   1 1122222 


Q ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeee
Q 005342          629 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQV  674 (701)
Q Consensus       629 ~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l  674 (701)
                      +.........--.++..|+....+.. ..-|.|++||++||.++..-
T Consensus       247 i~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~n  293 (327)
T d1utca2         247 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  293 (327)
T ss_dssp             CCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEe
Confidence            21111101133468888888777666 68899999999999986543

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.0017  Score=47.18  Aligned_cols=56  Identities=13%  Similarity=0.299  Sum_probs=47.1

Q ss_pred             chhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh--HHHHHHHHhcCCHHHHHHHhcc
Q 005342           12 TYTHLITLIMKFLEEENFKESLQALEQESKIFFN--VHRFGEIVMNGEWEKAEKYLSA   67 (701)
Q Consensus        12 ~~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~~   67 (701)
                      .++|+-+-|++||...||.+++.+|.+|+++.++  ...-...++.-+|..+.++=.+
T Consensus         6 Q~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK   63 (76)
T d1uuja_           6 QRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK   63 (76)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence            4789999999999999999999999999998874  6666677888888877765443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.84  E-value=1.1  Score=44.82  Aligned_cols=235  Identities=9%  Similarity=-0.021  Sum_probs=118.3

Q ss_pred             CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCC-------
Q 005342          341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSL-------  413 (701)
Q Consensus       341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d-------  413 (701)
                      +.-.++++.|+.+|+.+...         +.+.                    ....++|++|++.|+....+       
T Consensus       148 ~e~~~l~v~Dl~tg~~~~~~---------i~~~--------------------~~~~~~W~~D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         148 SDWVTIKFMKVDGAKELPDV---------LERV--------------------KFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             CSCEEEEEEETTTTEEEEEE---------EEEE--------------------CSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             CchheeEEeccCcceecccc---------cccc--------------------cccceEEcCCCCEEEEEEeccccCccc
Confidence            45578899999999765431         1110                    01258899999988765322       


Q ss_pred             ---------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---CCcEEEEecCCCCccccccc
Q 005342          414 ---------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEEN  481 (701)
Q Consensus       414 ---------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~~~~~~~~g~~~  481 (701)
                               ..|..|.+.+.....   .+..........+..+..++|+++++....   ++...+|-........+ ..
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d---~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~-~~  274 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSED---ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG-IT  274 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGC---EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS-SC
T ss_pred             ccccccCCcceEEEEECCCCcccc---ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccc-cc
Confidence                     256677775321111   111122223345677888999998765433   33444553311100000 00


Q ss_pred             cceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEE-Ee----CCeEEEEeCCCCcE---EEEecCCCCCeEEEEE
Q 005342          482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS-AS----GGKISIFSLETFQT---LATFANPPPIATYFIL  553 (701)
Q Consensus       482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s-~s----dg~I~iwd~~~~~~---~~~~~~~~~~i~~l~~  553 (701)
                              .......+   + ........-+...|..+.. ..    ++.|...++.....   ...+..+...+..-.+
T Consensus       275 --------~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~  342 (430)
T d1qfma1         275 --------GILKWVKL---I-DNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA  342 (430)
T ss_dssp             --------SSCCCEEE---E-CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEE
T ss_pred             --------cccceeEe---e-cccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEE
Confidence                    00000011   1 1122223323333443333 32    36777777765432   2233334444543344


Q ss_pred             cCC-C-eEEEEeCCC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEE-EE-EeC--CCeEEEEECCCCee
Q 005342          554 LPQ-D-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VS-SGA--DAQLCVWDAVGWKK  620 (701)
Q Consensus       554 spd-g-~l~~gs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l-~s-~s~--D~~I~vwd~~~g~~  620 (701)
                      ... + +++....++  .|++++..++..........+.|..+...++...+ ++ .|.  -.+++-+|+.+|+.
T Consensus       343 ~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         343 CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            433 3 444555665  68999998887665544444555555545555433 33 222  46899999998853

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.77  E-value=0.62  Score=45.47  Aligned_cols=156  Identities=6%  Similarity=-0.011  Sum_probs=84.5

Q ss_pred             EEEEcCCCCeEEEEcCCC-----------cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-Cc
Q 005342          397 ESTSLPDADSAVCAKSLE-----------KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-AT  464 (701)
Q Consensus       397 ~l~~spdg~~l~s~s~d~-----------~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g~  464 (701)
                      ......+|+.++.|+.+.           .+.+||..    +++..........+.......++.+||+.++.|+.+ ..
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~----t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPS----TGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK   99 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTT----TCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECC----CCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc
Confidence            344556888888877421           36789987    443322111111233334566788999988888764 67


Q ss_pred             EEEEecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEec-CCEEEEEe-C------CeEEEEeCCCC
Q 005342          465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR-GSHLFSAS-G------GKISIFSLETF  535 (701)
Q Consensus       465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s-~~~l~s~s-d------g~I~iwd~~~~  535 (701)
                      +.+||..+.                     .-... .+ ............. |++++.++ +      ..+.+||..+.
T Consensus       100 ~~~yd~~~~---------------------~w~~~~~~-~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         100 TSLYDSSSD---------------------SWIPGPDM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EEEEEGGGT---------------------EEEECCCC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eeEecCccC---------------------cccccccc-cccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            888866433                     21110 01 1112223333344 77777775 2      36899999876


Q ss_pred             cEEEEecC---------C-----CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce
Q 005342          536 QTLATFAN---------P-----PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT  578 (701)
Q Consensus       536 ~~~~~~~~---------~-----~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~  578 (701)
                      +-...-..         +     ...-..+...++| .+..|..++.+..+|..+...
T Consensus       158 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         158 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            53221100         0     0011223344556 666666777778888776644

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.59  E-value=1.7  Score=45.30  Aligned_cols=59  Identities=12%  Similarity=0.018  Sum_probs=40.2

Q ss_pred             CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       608 ~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      |.|.-+|+.+|+..-.....          .++.+-..+..|.++++| .||.++-+|.+||+.+-++..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~----------~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH----------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES----------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCC----------CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            56888888888755433322          112211233466777777 699999999999999988776

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.52  E-value=0.1  Score=54.82  Aligned_cols=142  Identities=14%  Similarity=0.012  Sum_probs=89.2

Q ss_pred             CeEEEEeCCCCcEEEEecCCCCC---------eEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCC------
Q 005342          525 GKISIFSLETFQTLATFANPPPI---------ATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGH------  585 (701)
Q Consensus       525 g~I~iwd~~~~~~~~~~~~~~~~---------i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h------  585 (701)
                      ..|.-.|+++++.+..++.....         ..-+.+..++    .++.+..+|.++++|..+++++.....-      
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            35677788888887766532211         1122222333    6778899999999999999876433210      


Q ss_pred             ----------------------------CC--CeEEEEEecCCCEEEEEeC-----------------------------
Q 005342          586 ----------------------------QN--RITCLAYSLSLNVLVSSGA-----------------------------  606 (701)
Q Consensus       586 ----------------------------~~--~V~~v~~spdg~~l~s~s~-----------------------------  606 (701)
                                                  .+  .-...+++|+..+++....                             
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                        00  0124567887776654332                             


Q ss_pred             -------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342          607 -------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       607 -------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                             .|.|.-||+.+|+..-..+..          .+..+-..+-.|.++++| .||.++-+|..+|+.+-++..
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~----------~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYP----------THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEES----------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCC----------CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence                   256888999999765544433          111111223346677776 799999999999999988776

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.42  E-value=1.3  Score=42.76  Aligned_cols=146  Identities=12%  Similarity=0.073  Sum_probs=86.9

Q ss_pred             eEEEEeCCC-CcEEEEecCC-------CCCeEEEEE--cCC-C--eEEEEeCCCcEEEEeCC---CC----ceEEeecCC
Q 005342          526 KISIFSLET-FQTLATFANP-------PPIATYFIL--LPQ-D--LFAFGFDDSSILVHCPC---TK----KTKAKLKGH  585 (701)
Q Consensus       526 ~I~iwd~~~-~~~~~~~~~~-------~~~i~~l~~--spd-g--~l~~gs~dg~I~iwd~~---~~----~~~~~l~~h  585 (701)
                      +|.+|.+.. ...+..+...       ...+..+|+  +|. |  ++++...+|.+..|.+.   .+    +.++.+. -
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-M  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-C
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-C
Confidence            677887742 3334444322       123556666  665 4  66777888998888653   22    3455555 3


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc--CCCC-EEEE-E-ecCeE
Q 005342          586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQI-HLLS-I-HEGQI  660 (701)
Q Consensus       586 ~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s--pdg~-~l~s-g-~Dg~I  660 (701)
                      ...+..|++.+....|..+-++.-|..++...........+....+++..  ..+..++.-  +++. +|++ + .+++.
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~--~D~EGlaiy~~~~~~GylivSsQG~n~f  256 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLT--PDIEGLTIYYAADGKGYLLASSQGNSSY  256 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCC--SCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCcccc--CCccccEEEEcCCCCeEEEEEcCCCCeE
Confidence            45688999999888888888887776666653211111222222222221  667777753  3332 5555 5 78999


Q ss_pred             EEEECCC-Cceeeee
Q 005342          661 DVYEAPT-LNHTSQV  674 (701)
Q Consensus       661 ~iwd~~~-g~~~~~l  674 (701)
                      .|||..+ .+.+..+
T Consensus       257 ~vydr~~~~~~~g~F  271 (353)
T d1h6la_         257 AIYERQGQNKYVADF  271 (353)
T ss_dssp             EEEESSTTCCEEEEE
T ss_pred             EEEecCCCccccceE
Confidence            9999876 3555554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.41  E-value=0.3  Score=51.19  Aligned_cols=82  Identities=16%  Similarity=-0.057  Sum_probs=54.5

Q ss_pred             CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCC-CCeEEEEEecCCC-EE
Q 005342          524 GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLN-VL  601 (701)
Q Consensus       524 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~v~~spdg~-~l  601 (701)
                      .|.|.-+|+.+|+.+.+................|++++|+.||.++.+|.++|+.+-++.-.. ..-.-+.|..||+ |+
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            378999999999988877532222222222234477789999999999999999997775321 1122356666886 66


Q ss_pred             EEEe
Q 005342          602 VSSG  605 (701)
Q Consensus       602 ~s~s  605 (701)
                      +...
T Consensus       523 ~v~~  526 (571)
T d2ad6a1         523 GSMY  526 (571)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.41  E-value=0.22  Score=52.27  Aligned_cols=141  Identities=11%  Similarity=0.033  Sum_probs=84.0

Q ss_pred             eEEEEeCCCCcEEEEecCCC---------CCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCCC------
Q 005342          526 KISIFSLETFQTLATFANPP---------PIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQ------  586 (701)
Q Consensus       526 ~I~iwd~~~~~~~~~~~~~~---------~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~------  586 (701)
                      .|.-.|.++++....++...         .+........++    .++.++.+|.++++|..+|+.+.......      
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            46666777777665554211         122222233333    67888999999999999998765432100      


Q ss_pred             ----------------------------C-CeEEEEEecCCCEEEEEeCC------------------------------
Q 005342          587 ----------------------------N-RITCLAYSLSLNVLVSSGAD------------------------------  607 (701)
Q Consensus       587 ----------------------------~-~V~~v~~spdg~~l~s~s~D------------------------------  607 (701)
                                                  + .-...+++|+..+++....+                              
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  443 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence                                        0 01234678877666543322                              


Q ss_pred             -------------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeee
Q 005342          608 -------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ  673 (701)
Q Consensus       608 -------------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~  673 (701)
                                   |.+.-||+.+|+.+-.....          .+..+-..+-.|.++++| .||.++.+|.++|+.+-.
T Consensus       444 ~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~----------~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~  513 (573)
T d1kb0a2         444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE  513 (573)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccCCCCCCCcccEEEeCCCCCceEeeecCC----------CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEE
Confidence                         35677777777654322221          111111123356777777 799999999999999987


Q ss_pred             eee
Q 005342          674 VLL  676 (701)
Q Consensus       674 l~~  676 (701)
                      +..
T Consensus       514 ~~~  516 (573)
T d1kb0a2         514 APT  516 (573)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            765

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=1.3  Score=40.69  Aligned_cols=194  Identities=10%  Similarity=-0.036  Sum_probs=117.9

Q ss_pred             eEEEEEcCCCCeEEEE-cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCC
Q 005342          395 SRESTSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQS  472 (701)
Q Consensus       395 V~~l~~spdg~~l~s~-s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~  472 (701)
                      +..++|.+..+.+.-+ ..++.|...+++    ++....+..   .....+.++++..-+..|..+.. .+.|.+.++..
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~----g~~~~~v~~---~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLH----GGEPTTIIR---QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESS----SCCCEEEEC---TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcc----cCCcEEEEE---eccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            7789999877766654 455778777776    333233221   12356889999877777766654 57888886632


Q ss_pred             CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C---CeEEEEeCCCCcEEEEecCCCC
Q 005342          473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPP  546 (701)
Q Consensus       473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d---g~I~iwd~~~~~~~~~~~~~~~  546 (701)
                      .                   ....+   + ......+..++++  +.++.... +   +.|..-++............-.
T Consensus       111 ~-------------------~~~~l---~-~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~  167 (263)
T d1npea_         111 T-------------------QRRVL---F-DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG  167 (263)
T ss_dssp             C-------------------SCEEE---E-CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred             c-------------------eEEEE---e-cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccc
Confidence            1                   11122   1 1223467788887  55555443 2   3466566644333332322334


Q ss_pred             CeEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342          547 IATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  620 (701)
Q Consensus       547 ~i~~l~~spdg-~l-~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~  620 (701)
                      ....+++++.+ .| .+-...+.|...|+........+.+-. ...++++. ++.+..+-...+.|...|..+|+.
T Consensus       168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCcc
Confidence            56899999887 44 555667899999987655444445433 34577775 344445555778999999998853

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.83  E-value=1.8  Score=44.73  Aligned_cols=80  Identities=16%  Similarity=0.120  Sum_probs=50.4

Q ss_pred             CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEE
Q 005342          566 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF  645 (701)
Q Consensus       566 g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~  645 (701)
                      |.+.-||+.+++.+-.... ..+..+-..+-.+.++..|+.||.++.+|..+|+.+-...+.   .+..   ..  -+.+
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~---~~~~---~~--P~ty  508 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ---SGIV---AA--PMTF  508 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS---SCCC---SC--CEEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECC---CCcc---cc--CEEE
Confidence            4678889999988765542 222222233445677888999999999999999866444333   2222   22  2455


Q ss_pred             cCCCC-EEEE
Q 005342          646 HPDQI-HLLS  654 (701)
Q Consensus       646 spdg~-~l~s  654 (701)
                      ..||+ +|++
T Consensus       509 ~~dGkqyv~v  518 (560)
T d1kv9a2         509 ELAGRQYVAI  518 (560)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            66885 5554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=1.7  Score=40.00  Aligned_cols=104  Identities=13%  Similarity=-0.080  Sum_probs=52.9

Q ss_pred             CCEEEEEe-C-----CeEEEEeCCCCcEEEEecCC-CCCeEEEEEcCCCeEEEEeCCC-----cEEEEeCCCCceEEeec
Q 005342          516 GSHLFSAS-G-----GKISIFSLETFQTLATFANP-PPIATYFILLPQDLFAFGFDDS-----SILVHCPCTKKTKAKLK  583 (701)
Q Consensus       516 ~~~l~s~s-d-----g~I~iwd~~~~~~~~~~~~~-~~~i~~l~~spdg~l~~gs~dg-----~I~iwd~~~~~~~~~l~  583 (701)
                      +..++.|+ +     ..+..||..+.+....-... .....+.+...+..++.|+.++     ....+|..+.+....-.
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~  228 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP  228 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccC
Confidence            55555554 3     46788898766533221111 1111233333333455554443     56788877765433211


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCe
Q 005342          584 GHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWK  619 (701)
Q Consensus       584 ~h~~~V~~v~~spdg~~l~s~s~D~-----~I~vwd~~~g~  619 (701)
                      .........+...++++++.|+.++     .|.+||+.+..
T Consensus       229 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         229 MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            1111121122234678777776544     48899999864

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.27  E-value=2.1  Score=41.08  Aligned_cols=155  Identities=11%  Similarity=0.021  Sum_probs=86.5

Q ss_pred             CeEEEEeCCCCcE-EEE--ecCCC-----CCeEEE--EEcCCC--eEEEEe---CCCcEEEEeCCCCc--e--EEeecC-
Q 005342          525 GKISIFSLETFQT-LAT--FANPP-----PIATYF--ILLPQD--LFAFGF---DDSSILVHCPCTKK--T--KAKLKG-  584 (701)
Q Consensus       525 g~I~iwd~~~~~~-~~~--~~~~~-----~~i~~l--~~spdg--~l~~gs---~dg~I~iwd~~~~~--~--~~~l~~-  584 (701)
                      |.|.++|+.+... ...  +.+..     -....+  .-.++|  +|++..   ...+|.+|++....  .  +.++.. 
T Consensus        68 G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~  147 (340)
T d1v04a_          68 GKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK  147 (340)
T ss_dssp             CEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT
T ss_pred             CeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCc
Confidence            8999999876542 111  22111     112333  335566  455543   34578888765432  1  222322 


Q ss_pred             CCCCeEEEEEecCCCEEEEEeC---------------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342          585 HQNRITCLAYSLSLNVLVSSGA---------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ  649 (701)
Q Consensus       585 h~~~V~~v~~spdg~~l~s~s~---------------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg  649 (701)
                      .....+++++..+|.+++|-..               -++..+|....++.  .....    +-    ...+.|+++||+
T Consensus       148 ~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~--~~~~~----~l----~~pNGI~~s~d~  217 (340)
T d1v04a_         148 LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV--RVVAE----GF----DFANGINISPDG  217 (340)
T ss_dssp             TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE--EEEEE----EE----SSEEEEEECTTS
T ss_pred             cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce--EEEcC----CC----CccceeEECCCC
Confidence            2235799999999998887421               12345555544421  11122    21    557999999999


Q ss_pred             CEEEEE--ecCeEEEEECCCCceeeeeeeeeEEEEEeeEEeee
Q 005342          650 IHLLSI--HEGQIDVYEAPTLNHTSQVLLISHIMFVQIVVKFH  690 (701)
Q Consensus       650 ~~l~sg--~Dg~I~iwd~~~g~~~~~l~~i~~~~fs~~~~~f~  690 (701)
                      ++|+++  ..+.|++|++.....+.... ...+-..|+.+..-
T Consensus       218 ~~lyVa~t~~~~i~~y~~~~~~~l~~~~-~~~l~~~pDNi~~d  259 (340)
T d1v04a_         218 KYVYIAELLAHKIHVYEKHANWTLTPLR-VLSFDTLVDNISVD  259 (340)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEE-EEECSSEEEEEEEC
T ss_pred             CEEEEEeCCCCeEEEEEeCCCcccceEE-EecCCCCCCccEEe
Confidence            998886  57889999986443322211 22344556666653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.03  E-value=0.87  Score=47.49  Aligned_cols=79  Identities=19%  Similarity=0.158  Sum_probs=49.3

Q ss_pred             cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc
Q 005342          567 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH  646 (701)
Q Consensus       567 ~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s  646 (701)
                      .+.-||+.+++.+-..+.. .+...-..+-.|.++.+|+.|+.++.+|.++|+.+-...+.   .+..  ..+   +.|.
T Consensus       458 ~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~---~~~~--~~P---~ty~  528 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG---TGVV--AAP---STYM  528 (573)
T ss_dssp             EEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS---SCCC--SCC---EEEE
T ss_pred             cEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC---CCcc--ccC---EEEE
Confidence            5777888888877665532 22222233446778888999999999999999866444333   2322  023   4555


Q ss_pred             CCCC-EEEE
Q 005342          647 PDQI-HLLS  654 (701)
Q Consensus       647 pdg~-~l~s  654 (701)
                      .||+ |+++
T Consensus       529 ~~GkQYv~v  537 (573)
T d1kb0a2         529 VDGRQYVSV  537 (573)
T ss_dssp             ETTEEEEEE
T ss_pred             ECCEEEEEE
Confidence            6886 4443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.02  E-value=3.4  Score=41.20  Aligned_cols=55  Identities=9%  Similarity=0.190  Sum_probs=39.5

Q ss_pred             ceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-cCC----CCCCCCEEEEEEecC
Q 005342          394 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LPD----NSFGGRVVRLIYSHS  452 (701)
Q Consensus       394 ~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~~~----~~~~~~v~~l~~spd  452 (701)
                      .-++++|.|||+++++--..|.|++++..    .+....+. ++.    .........++++|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~----~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPE----SGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTT----TCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECC----CCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            37899999999999988767999998876    44443333 221    122467889999986

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.82  E-value=2.5  Score=40.51  Aligned_cols=187  Identities=12%  Similarity=0.135  Sum_probs=107.2

Q ss_pred             CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec----CC--CEEEEEEC--C--CcEEEEecC
Q 005342          402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH----SG--DFLVALTQ--T--ATHKLWKWQ  471 (701)
Q Consensus       402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp----dg--~~l~s~s~--d--g~i~vwd~~  471 (701)
                      |+..+++....++-+.+||++    ..+...+      ..+++..+..-.    ++  .-+++++.  +  .++.+|.+ 
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~----G~~l~~~------~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~i-  106 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE----GKMLHSY------HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI-  106 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT----CCEEEEC------CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEE-
T ss_pred             cCccEEEEEcCcCCEEEEcCC----CcEEEec------ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEe-
Confidence            455677777777789999995    4433331      234555554332    22  23555553  2  35777755 


Q ss_pred             CCCccccccccceeeEEeeCCCCeEEeecccC----CCCCCeEEEEe--c---CCE-EEEEe-CCeEEEEeCC---CC--
Q 005342          472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAA----DPKDSISCFAL--R---GSH-LFSAS-GGKISIFSLE---TF--  535 (701)
Q Consensus       472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~v~~l~~--s---~~~-l~s~s-dg~I~iwd~~---~~--  535 (701)
                                        +...+.+.......    .....+..+|+  +   |.. +++.. +|.+..|.+.   .+  
T Consensus       107 ------------------d~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v  168 (353)
T d1h6la_         107 ------------------DGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYI  168 (353)
T ss_dssp             ------------------ETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSE
T ss_pred             ------------------cCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCce
Confidence                              33333221100000    01123555555  4   544 34444 7888887652   33  


Q ss_pred             --cEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-----CceEEeecC--CCCCeEEEEEec--CCC--EE
Q 005342          536 --QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-----KKTKAKLKG--HQNRITCLAYSL--SLN--VL  601 (701)
Q Consensus       536 --~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~-----~~~~~~l~~--h~~~V~~v~~sp--dg~--~l  601 (701)
                        +.++++. ....+..|.+++.. .|..+-++.-|+.++..-     +..+....+  ....+..++.-.  ++.  +|
T Consensus       169 ~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~Gyli  247 (353)
T d1h6la_         169 SGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLL  247 (353)
T ss_dssp             EEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEE
T ss_pred             eeEeeeccC-CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEE
Confidence              3556665 45678899999988 999999988887777542     233333322  345677776543  333  55


Q ss_pred             EEEeCCCeEEEEECCCC
Q 005342          602 VSSGADAQLCVWDAVGW  618 (701)
Q Consensus       602 ~s~s~D~~I~vwd~~~g  618 (701)
                      ||.-.+++..|||..+.
T Consensus       248 vSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         248 ASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEGGGTEEEEEESSTT
T ss_pred             EEcCCCCeEEEEecCCC
Confidence            56666899999999873

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.77  E-value=1.1  Score=43.82  Aligned_cols=186  Identities=10%  Similarity=-0.016  Sum_probs=104.8

Q ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc-cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEE
Q 005342          442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF  520 (701)
Q Consensus       442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~-~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~  520 (701)
                      ....-++.++....+++|+.++ +.|-....-.. ...           .......... .   .-..|..++++++.++
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~-----------~~~~~~~~~~-~---~ip~v~~vafs~d~l~  100 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS-----------DSTPLTFKWE-K---EIPDVIFVCFHGDQVL  100 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS-----------SSCCCCCSEE-E---ECTTEEEEEEETTEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhc-----------cCCCCcceec-c---CCCCeEEEEeeCCEEE
Confidence            4556677888777777777765 45554311000 000           0000111100 0   1125888999966777


Q ss_pred             EEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC-----CCCCeEEEEEe
Q 005342          521 SASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG-----HQNRITCLAYS  595 (701)
Q Consensus       521 s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~-----h~~~V~~v~~s  595 (701)
                      ...++.+..++..+-...........++.++.+.|.. ++....+|.+.++++..++......+     -.+.+.+++|+
T Consensus       101 v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws  179 (381)
T d1xipa_         101 VSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLK  179 (381)
T ss_dssp             EEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEET
T ss_pred             EEeCCCEEEEEeeccccccccccccccccceecCCce-eEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEe
Confidence            7777888888876654444433345667888888774 55566789999999988765332221     23557777887


Q ss_pred             cCCCEEEEEeCCCeEEE-EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342          596 LSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  654 (701)
Q Consensus       596 pdg~~l~s~s~D~~I~v-wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s  654 (701)
                      +.|..++++..++ ..+ -++..     ...+......+    ..|.+|.|-.+..++++
T Consensus       180 ~kgkq~v~~~g~~-~q~k~~i~~-----~~~~~~p~~~~----~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         180 DRSFQSFAWRNGE-MEKQFEFSL-----PSELEELPVEE----YSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             TSCEEEEEEETTE-EEEEEEECC-----CHHHHTSCTTT----SEEEEEEESSSSEEEEE
T ss_pred             CCcEEEEEeCCCc-eeeccCCCC-----ccccCCCcCCC----cceeEEEEecCceEEEE
Confidence            7777777664332 111 01111     00111000111    56889999988777775

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=3.9  Score=37.40  Aligned_cols=156  Identities=8%  Similarity=-0.032  Sum_probs=98.4

Q ss_pred             CCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCc----EEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC
Q 005342          506 KDSISCFALR--GSHLFSAS--GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT  575 (701)
Q Consensus       506 ~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~  575 (701)
                      ...+..++++  ++.+....  .+.|...++....    ....+......+..+++.+.+  ...+-...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            3456788888  66666665  5778777764321    122223233456789998776  555556677999999887


Q ss_pred             CceEEeecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342          576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  653 (701)
Q Consensus       576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s--~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~  653 (701)
                      ......+.........++++|...+|....  ..+.|.-.++.....   ..+.  . ...   ...+++++.+.+..|.
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~---~~l~--~-~~~---~~p~gl~iD~~~~~lY  179 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLV--T-ENI---QWPNGITLDLLSGRLY  179 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEE--C-SSC---SCEEEEEEETTTTEEE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce---eccc--c-ccc---ceeeEEEeeccccEEE
Confidence            665554555556688999999655554433  345677777765431   1221  1 111   5568999999888777


Q ss_pred             EE--ecCeEEEEECCCCce
Q 005342          654 SI--HEGQIDVYEAPTLNH  670 (701)
Q Consensus       654 sg--~Dg~I~iwd~~~g~~  670 (701)
                      .+  ..+.|...++.....
T Consensus       180 w~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         180 WVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             EEETTTTEEEEEETTSCSC
T ss_pred             EecCCcCEEEEEECCCCCE
Confidence            65  567898889865443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.15  E-value=4  Score=42.32  Aligned_cols=77  Identities=12%  Similarity=0.072  Sum_probs=48.2

Q ss_pred             eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC-eEEEEEcCCC--e
Q 005342          485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI-ATYFILLPQD--L  558 (701)
Q Consensus       485 ~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~-i~~l~~spdg--~  558 (701)
                      .+..||+.+|++.-+.   .+..+..+=.++  |..++.|+ ||.++.+|.++|+.+.++...... -.-+.+.-+|  +
T Consensus       454 ~l~A~D~~TG~~~W~~---~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         454 QIKAYNAITGDYKWEK---MERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEECTTTCCEEEEE---EESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             eEEEEeCCCCceeccc---CCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEE
Confidence            3778899999865221   112222222223  77888888 999999999999999988643221 1224455578  6


Q ss_pred             EEEEeC
Q 005342          559 FAFGFD  564 (701)
Q Consensus       559 l~~gs~  564 (701)
                      |++...
T Consensus       531 vav~~G  536 (596)
T d1w6sa_         531 VAIYYG  536 (596)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            665443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.08  E-value=6.5  Score=34.14  Aligned_cols=157  Identities=11%  Similarity=0.080  Sum_probs=81.5

Q ss_pred             CCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEE--EecCCCCCeEEEEEcCCCeEE----EEeCCCcEEEEeCCCCce
Q 005342          507 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLA--TFANPPPIATYFILLPQDLFA----FGFDDSSILVHCPCTKKT  578 (701)
Q Consensus       507 ~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~spdg~l~----~gs~dg~I~iwd~~~~~~  578 (701)
                      -.|.+++.. .+.+.+|+ .....+|-++.|+...  .++ .-+-|+.+.  .+ +++    .+.......+-|+.+|. 
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vP-pFsFVtDI~--~d-~I~G~g~~~g~~~sfF~adl~SG~-  178 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-GFGFVSDIR--GD-LIAGLGFFGGGRVSLFTSNLSSGG-  178 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-SCEEEEEEE--TT-EEEEEEEEETTEEEEEEEETTTEE-
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCC-CcceEEecc--CC-eEEEEeeecCCcceEEEEecccCC-
Confidence            456777777 56666777 6778888887776433  333 122233221  11 111    11111123333443332 


Q ss_pred             EEeecCCCCCeEEEEEecCCCEEEEE----eCCCeEEEEECCCCeeeeeeeeeeccCCCC--CCCCCeEEEEEcCCCCEE
Q 005342          579 KAKLKGHQNRITCLAYSLSLNVLVSS----GADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPDQIHL  652 (701)
Q Consensus       579 ~~~l~~h~~~V~~v~~spdg~~l~s~----s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~--~~~~~v~~v~~spdg~~l  652 (701)
                      ++.+....+.++.....++.+. +++    ++.--| -+|.++++-.   .+. ++....  -....|+-+-+.|+++++
T Consensus       179 lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~ye---rve-~P~kd~~sy~p~~I~~~~Y~Pdd~L~  252 (313)
T d2hu7a1         179 LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVE---DLE-LPSKDFSSYRPTAITWLGYLPDGRLA  252 (313)
T ss_dssp             EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEE---ECC-CSSCHHHHHCCSEEEEEEECTTSCEE
T ss_pred             EEEecCCCCcccceeEccCcee-eeccCCCCceEEE-EEecccCcee---eee-cCcccceeecceEEEeeeeCCCCcEE
Confidence            2333334445555566665554 332    222234 4488876422   222 221100  000456667789999997


Q ss_pred             EEE-ecCeEEEEECCCCceeeeeee
Q 005342          653 LSI-HEGQIDVYEAPTLNHTSQVLL  676 (701)
Q Consensus       653 ~sg-~Dg~I~iwd~~~g~~~~~l~~  676 (701)
                      +.+ .||.-+++.  +|+.+.+-+|
T Consensus       253 iiakrdG~s~lF~--nGk~in~p~G  275 (313)
T d2hu7a1         253 VVARREGRSAVFI--DGERVEAPQG  275 (313)
T ss_dssp             EEEEETTEEEEEE--TTEEECCCSS
T ss_pred             EEEecCCchheee--cceEecCCCC
Confidence            766 899999987  6888777777

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.07  E-value=1.3  Score=46.30  Aligned_cols=80  Identities=20%  Similarity=0.142  Sum_probs=52.3

Q ss_pred             CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEE
Q 005342          566 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF  645 (701)
Q Consensus       566 g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~  645 (701)
                      |.|.-+|+.+|+.+-....+ .++..-..+..|.++.+|+.||.++.+|.++|+.+-...+.   .+..   ..  -+.|
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~---~~~~---~~--P~ty  536 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG---SGIV---SP--PITW  536 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS---SCCC---SC--CEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECC---CCcc---cc--CEEE
Confidence            56888899999887766533 23333233456778888999999999999999866444333   2221   21  2566


Q ss_pred             cCCCC-EEEE
Q 005342          646 HPDQI-HLLS  654 (701)
Q Consensus       646 spdg~-~l~s  654 (701)
                      ..+|+ |+++
T Consensus       537 ~~~G~qYv~i  546 (582)
T d1flga_         537 EQDGEQYLGV  546 (582)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            77885 5554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.35  E-value=17  Score=34.85  Aligned_cols=176  Identities=11%  Similarity=-0.047  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCeEEEEcCCCcEEEEecccc-------CCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342          395 SRESTSLPDADSAVCAKSLEKSVNLKLQLI-------NEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  466 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~-------~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  466 (701)
                      .+-++.++...+++.|+.++ +.|-.+.+.       ...... ....      -..|..++|+-|  .+++. .++.+.
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~------ip~v~~vafs~d--~l~v~-~~~~l~  108 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE------IPDVIFVCFHGD--QVLVS-TRNALY  108 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE------CTTEEEEEEETT--EEEEE-ESSEEE
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC------CCCeEEEEeeCC--EEEEE-eCCCEE
Confidence            44688888888888888765 667665422       001111 1111      236889999754  44444 455666


Q ss_pred             EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecC--
Q 005342          467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFAN--  543 (701)
Q Consensus       467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~--  543 (701)
                      .++...                  ..++....     ....++..+.++ ...++...+|.+.++++..++......+  
T Consensus       109 ~~~~~~------------------l~~~~~~~-----~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~  165 (381)
T d1xipa_         109 SLDLEE------------------LSEFRTVT-----SFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVT  165 (381)
T ss_dssp             EEESSS------------------TTCEEEEE-----ECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEE
T ss_pred             EEEeec------------------cccccccc-----cccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcc
Confidence            665422                  11111111     123457777777 4444444499999999988764332211  


Q ss_pred             ---CCCCeEEEEEcCCC-eEEEEeCCCcEEE-EeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE
Q 005342          544 ---PPPIATYFILLPQD-LFAFGFDDSSILV-HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS  604 (701)
Q Consensus       544 ---~~~~i~~l~~spdg-~l~~gs~dg~I~i-wd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~  604 (701)
                         -...+.+++|++.| .++++..++ ..+ -++.....+..-......|.++.|-.+..++++-
T Consensus       166 ~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         166 SFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence               13557778888777 666664322 111 1111111111111133468889998777766644

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=83.53  E-value=18  Score=33.92  Aligned_cols=188  Identities=11%  Similarity=0.067  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCeEEEEcC------------CCcEEEEeccccCCCCceeEeecCCC---CCCCCEEEEEE--ecCCC-EE
Q 005342          395 SRESTSLPDADSAVCAKS------------LEKSVNLKLQLINEPSECRTLLLPDN---SFGGRVVRLIY--SHSGD-FL  456 (701)
Q Consensus       395 V~~l~~spdg~~l~s~s~------------d~~v~iw~~~~~~~~~~~~~l~~~~~---~~~~~v~~l~~--spdg~-~l  456 (701)
                      --.++..|+|..+++++.            .|.+.++|+.+....  ...+.....   ...-....+..  .++|+ +|
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~--~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA--VSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCC--EEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCc--ceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence            335777899988877642            378888888642221  122221100   00011223332  34454 23


Q ss_pred             EEEE---CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEE-eecccCCCCCCeEEEEec--CCEEEEEe----C--
Q 005342          457 VALT---QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM-TNDIAADPKDSISCFALR--GSHLFSAS----G--  524 (701)
Q Consensus       457 ~s~s---~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~v~~l~~s--~~~l~s~s----d--  524 (701)
                      ++..   ...+|.++++                   +..+..+. ...+.........++++.  |+++++-.    +  
T Consensus       115 ~vvnH~~~~~~ieif~~-------------------~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~  175 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKF-------------------QEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPY  175 (340)
T ss_dssp             EEEECSTTCCEEEEEEE-------------------ETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHH
T ss_pred             EEEeccCCCceeEEEEE-------------------eCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChh
Confidence            3332   2355666655                   33333321 111222333456777777  66666521    0  


Q ss_pred             ----------CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeec--CCCCCeE
Q 005342          525 ----------GKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRIT  590 (701)
Q Consensus       525 ----------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~~V~  590 (701)
                                +...+|....+....... .-...+.|+++||+  ++++-+..+.|++|++..........  .-.+..-
T Consensus       176 ~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pD  254 (340)
T d1v04a_         176 LKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVD  254 (340)
T ss_dssp             HHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEE
T ss_pred             hhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCC
Confidence                      123344433333322222 23456899999999  55666777899999987543222111  1234466


Q ss_pred             EEEEec-CCCEEEEE
Q 005342          591 CLAYSL-SLNVLVSS  604 (701)
Q Consensus       591 ~v~~sp-dg~~l~s~  604 (701)
                      .+.+.+ +|.+.+.+
T Consensus       255 Ni~~d~~~g~lwva~  269 (340)
T d1v04a_         255 NISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEECTTTCCEEEEE
T ss_pred             ccEEecCCCEEEEEE
Confidence            778876 45554443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=80.70  E-value=12  Score=36.84  Aligned_cols=53  Identities=15%  Similarity=0.154  Sum_probs=37.0

Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE--Eeec------CCCCCeEEEEEecC
Q 005342          545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK--AKLK------GHQNRITCLAYSLS  597 (701)
Q Consensus       545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~--~~l~------~h~~~V~~v~~spd  597 (701)
                      -...++|+|.||| ++++--.+|.|++++..++...  ..+.      .-.+....++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3456899999999 6665545799999998776542  2221      12346789999995

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.54  E-value=19  Score=32.12  Aligned_cols=144  Identities=10%  Similarity=0.001  Sum_probs=66.8

Q ss_pred             CCEEEEEe-C-----CeEEEEeCCCCcEEEEecCCCCC-eEEEEEcCCCeEEEEeCCC-----cEEEEeCCCCceEEeec
Q 005342          516 GSHLFSAS-G-----GKISIFSLETFQTLATFANPPPI-ATYFILLPQDLFAFGFDDS-----SILVHCPCTKKTKAKLK  583 (701)
Q Consensus       516 ~~~l~s~s-d-----g~I~iwd~~~~~~~~~~~~~~~~-i~~l~~spdg~l~~gs~dg-----~I~iwd~~~~~~~~~l~  583 (701)
                      +..++.++ +     .....+|..+......-...... -.+.....+..++.|+.+.     .+..||..+.+....-.
T Consensus       102 ~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~  181 (288)
T d1zgka1         102 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA  181 (288)
T ss_dssp             TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC
T ss_pred             eeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEeeccccccccccc
Confidence            55555544 3     34556777665432211111111 1223333333555554433     57888887765432211


Q ss_pred             CC-CCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-e
Q 005342          584 GH-QNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H  656 (701)
Q Consensus       584 ~h-~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~  656 (701)
                      .. .....+.+. .++..++.|+.+     .....+|..+.....   +...+...    .....+.  .++++++.| .
T Consensus       182 ~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~r----~~~~~~~--~~~~l~v~GG~  251 (288)
T d1zgka1         182 MNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTF---VAPMKHRR----SALGITV--HQGRIYVLGGY  251 (288)
T ss_dssp             CSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE---CCCCSSCC----BSCEEEE--ETTEEEEECCB
T ss_pred             cccccccccccc-eeeeEEEecCccccccccceeeeeecceeeec---ccCccCcc----cceEEEE--ECCEEEEEecC
Confidence            11 111122222 345566665543     356788888764322   21111111    1122222  367777774 3


Q ss_pred             c-----CeEEEEECCCCc
Q 005342          657 E-----GQIDVYEAPTLN  669 (701)
Q Consensus       657 D-----g~I~iwd~~~g~  669 (701)
                      +     ..+.+||+.+.+
T Consensus       252 ~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         252 DGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CSSCBCCEEEEEETTTTE
T ss_pred             CCCeecceEEEEECCCCE
Confidence            2     248899998765