Citrus Sinensis ID: 005396

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70
MEMSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
ccccccccccccccccccccccccHHHcHHcccccccccccccccccccccccHHHHHHHHHHHccccccccEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEccccccccccHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccEEcccHHHHHHHHHccccccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccc
ccccccccccccccccccccccccccccccccccccccccccccHccccccHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHHccHHHHccHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccEEEEccHHHHHHHHHHHcHcccccccccccccccccccEEEEEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccc
memsypstprwnierpfltgrfhqETKAASRFadsfsnngaemAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVnhvhgndtydstvTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFycqpmlgsMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVyegviddpygefFIAEDKSLLKDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMrecghsaqvptsenskllsfgsnhhYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRStaaaadpchedltcsVERSSLLKRMATLKGVeiktssdsvdleqpvsitglETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLtfevlepnwhVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISssidlpkleepsdgfsgsekfkRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQslgpilssssqaepYLTHLAQLVLGVGFDK
memsypstprwnierpFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTaaaadpchedltcsverssLLKRMATLKGveiktssdsvdleqpvSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPsdgfsgsekfkrlkLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
MEMSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
***********NIERPFLTGRFH********FADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQV******KLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEI*******DLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSID************************LSQVQKVMIRDATVTESILKFEREFNNE***************PYLTHLAQLVLGVG***
***SYPSTPRWNIERPFLTG********************************QELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE**********EQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSI*********************************IRDATVTESILKFEREFNNELQSLGPILS*********THLAQLVLGVGFDK
********PRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
*EMSYPSTPRWNIERPFLTGRFHQ******************MAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE********D***PVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSE***RLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGF**
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MEMSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFxxxxxxxxxxxxxxxxxxxxxFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query698 2.2.26 [Sep-21-2011]
Q921G8905 Gamma-tubulin complex com yes no 0.835 0.644 0.388 1e-126
Q9BSJ2902 Gamma-tubulin complex com yes no 0.835 0.646 0.387 1e-125
Q5R5J6902 Gamma-tubulin complex com yes no 0.835 0.646 0.384 1e-124
Q95ZG3 1335 Spindle pole body compone yes no 0.856 0.447 0.309 5e-97
Q9XYP7852 Gamma-tubulin complex com yes no 0.818 0.670 0.319 1e-91
Q9Y705784 Spindle pole body compone yes no 0.810 0.721 0.310 7e-72
Q96CW5907 Gamma-tubulin complex com no no 0.702 0.540 0.260 2e-46
P58854905 Gamma-tubulin complex com no no 0.702 0.541 0.258 1e-45
O73787906 Gamma-tubulin complex com N/A no 0.693 0.534 0.261 2e-45
Q9XYP8917 Gamma-tubulin complex com no no 0.485 0.369 0.266 8e-31
>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2 Back     alignment and function desciption
 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/617 (38%), Positives = 367/617 (59%), Gaps = 34/617 (5%)

Query: 6   PSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSAL 65
           P  P W  ERP L G F            S  ++   + IG      QE  V++DLL  L
Sbjct: 175 PVFPAWVYERPTLAGDF---------LIGSGLSSDTVLPIGTLPLASQESAVVEDLLYVL 225

Query: 66  VGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFV 125
           VG++GRYI+ +                TF VD ++DL+++E+  RI P+  S+    +F+
Sbjct: 226 VGVDGRYITAQPLAGR--------QNRTFLVDPNLDLSIRELVNRILPVAASYSTVTRFI 277

Query: 126 ESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQA 185
           E +S F+ G VNHA AA++R L+ +Y  +V QLE   R G LS+Q LWFY QP + ++  
Sbjct: 278 EEKSSFEYGQVNHALAAAMRTLVKEYLILVTQLEQLHRQGLLSLQKLWFYIQPAMRTIDI 337

Query: 186 VSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYE 245
           ++++          G + L+LL  ++    GD+  + L   +T+ AS  Y  ILE+W+Y 
Sbjct: 338 LASLATSVDKGECVGGSTLSLLHDRSFNYTGDSQAQELCLYLTKAASAPYFEILEKWIYR 397

Query: 246 GVIDDPYGEFFIAE----DKSLLKDYDAKYWRQRYS-LKDGIPSFLANIAGKILTTGKYL 300
           G+I DPY EF + E     + + +DY+ KYW QRY+ L   IPSFL  +AGKIL+TGKYL
Sbjct: 398 GIIHDPYSEFMVEEHELRKEKIQEDYNDKYWDQRYTVLPQQIPSFLQKVAGKILSTGKYL 457

Query: 301 NVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRS 360
           NV+RECGH    P ++  +++       Y+E ++ A+ +AS  LL+ + E  +L+  LRS
Sbjct: 458 NVVRECGHDVTCPVAK--EIIYTLKERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLRS 515

Query: 361 IKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTC 420
           IKRY L+DQGDF VHFMD+  EEL K +++I + +L++LL++ALR + A  DP  +DL  
Sbjct: 516 IKRYFLMDQGDFFVHFMDLTEEELRKPVEDIILTRLEALLELALRMSTANTDPFKDDLKI 575

Query: 421 SVERSSLLKRMATLKGVEIK-----TSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVIS 475
            +    L+ ++  +  +E K     T +D  +L    +++GLE FS  Y V+WPLS++I+
Sbjct: 576 ELMPHDLITQLLRVLAIETKQEKAMTHADPTEL----TLSGLEAFSFDYMVKWPLSLIIN 631

Query: 476 RKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNA-SGTAISRSSLLCRSMLKFIN 534
           RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+     S    + +  L + ML F+ 
Sbjct: 632 RKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHALHSAKWFAGAFTLRQRMLNFVQ 691

Query: 535 SLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERL 594
           ++ +Y+ FEV+EP WH++   L++A +ID+V+ HH  FLD CL++C+L  P+LLK   +L
Sbjct: 692 NIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHTSFLDNCLKDCMLTNPELLKVFSKL 751

Query: 595 KSLCLQYAAATQWLISS 611
            S+C+ +    Q    S
Sbjct: 752 MSVCVMFTNCMQKFTQS 768
Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.
Mus musculus (taxid: 10090)
>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2 Back     alignment and function description
>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1 Back     alignment and function description
>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2 Back     alignment and function description
>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1 Back     alignment and function description
>sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2 Back     alignment and function description
>sp|P58854|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2 Back     alignment and function description
>sp|O73787|GCP3_XENLA Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1 Back     alignment and function description
>sp|Q9XYP8|GCP3_DROME Gamma-tubulin complex component 3 homolog OS=Drosophila melanogaster GN=l(1)dd4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query698
296087642702 unnamed protein product [Vitis vinifera] 0.981 0.975 0.805 0.0
224112407711 tubulin gamma complex-associated protein 0.968 0.950 0.766 0.0
449461078707 PREDICTED: spindle pole body component 9 0.969 0.957 0.779 0.0
359488832681 PREDICTED: gamma-tubulin complex compone 0.951 0.975 0.793 0.0
255578011713 gamma-tubulin complex component, putativ 0.979 0.959 0.744 0.0
18418288678 Spc97 / Spc98 family of spindle pole bod 0.942 0.970 0.738 0.0
30686344679 Spc97 / Spc98 family of spindle pole bod 0.942 0.969 0.737 0.0
297807763678 hypothetical protein ARALYDRAFT_488606 [ 0.942 0.970 0.733 0.0
9755764683 spindle pole body protein-like [Arabidop 0.942 0.963 0.733 0.0
356560679664 PREDICTED: gamma-tubulin complex compone 0.924 0.971 0.759 0.0
>gi|296087642|emb|CBI34898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1085 bits (2805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/701 (80%), Positives = 618/701 (88%), Gaps = 16/701 (2%)

Query: 4   SYPSTPRWNIERPFLTGRFHQETKAASRFADSFS----NNGAEMAIGCYDAGVQELLVID 59
           S PSTPRWN+ERPFLTGRFHQETK+    A  FS    N G E AI CY A VQEL+VID
Sbjct: 6   SCPSTPRWNVERPFLTGRFHQETKSRHSEAKGFSMDSLNTGLEKAIACYHASVQELIVID 65

Query: 60  DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFV 119
           DLLSALVGIEGRYISIKR      G + +D  VTFQ+DASMDLALQE+AKRIFPLCESF+
Sbjct: 66  DLLSALVGIEGRYISIKR----FRGKE-FD--VTFQIDASMDLALQELAKRIFPLCESFL 118

Query: 120 LTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPM 179
           L  QFVESRSQFK GLVNHAFAA+LRA LLDY+AMVAQLEHQFRLGRLSIQGLWFYCQPM
Sbjct: 119 LINQFVESRSQFKTGLVNHAFAAALRAFLLDYQAMVAQLEHQFRLGRLSIQGLWFYCQPM 178

Query: 180 LGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGIL 239
           +GSM A+S VIHKASANNF GSAVLNLLQSQAKAMAGDN VRSLLEKMTQCAS+AYLGIL
Sbjct: 179 MGSMLALSTVIHKASANNFMGSAVLNLLQSQAKAMAGDNAVRSLLEKMTQCASSAYLGIL 238

Query: 240 ERWVYEGVIDDPYGEFFIAEDKSLLK-----DYDAKYWRQRYSLKDGIPSFLANIAGKIL 294
           ERWVYEGVIDDPYGEFFIAE+KSL K     DYDAKYW QRYSLKDGIPSFLAN AG IL
Sbjct: 239 ERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWGQRYSLKDGIPSFLANAAGTIL 298

Query: 295 TTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDL 354
           TTGKYLNVMRECGH+ QVP SE+SK +SFGSNHHYLEC+K AYEF+S ELLNLIKE+YDL
Sbjct: 299 TTGKYLNVMRECGHNVQVPASEDSKFISFGSNHHYLECIKAAYEFSSTELLNLIKEKYDL 358

Query: 355 MGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPC 414
           +GKLRSIK YLLLDQGDFLVHFMDIAR+EL K+LD+I+VEKLQSLLD+ALR+TAAAADPC
Sbjct: 359 LGKLRSIKHYLLLDQGDFLVHFMDIARDELAKRLDDISVEKLQSLLDLALRTTAAAADPC 418

Query: 415 HEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVI 474
           HEDLTC VERSSLLKR+ TLK +EI++ +DS DL++PVSI+GLETFSLSYKVQWPLSIVI
Sbjct: 419 HEDLTCCVERSSLLKRLGTLKALEIRSLADSNDLKEPVSISGLETFSLSYKVQWPLSIVI 478

Query: 475 SRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFIN 534
           SRKALTKYQ++FR LFHCKHV RQLCGAWQ+HQG RA N  GTAI RSSLLCRSMLKFIN
Sbjct: 479 SRKALTKYQLIFRFLFHCKHVNRQLCGAWQLHQGVRAINMRGTAIPRSSLLCRSMLKFIN 538

Query: 535 SLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERL 594
           SLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQ HDFFLDKCLRECLL LP+LLKKVERL
Sbjct: 539 SLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQFHDFFLDKCLRECLLLLPELLKKVERL 598

Query: 595 KSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTE 654
           KSLCLQYA+ATQ LISSS+D+PK E PS G  G EK K+ K R  S+V K+ I ++TVT+
Sbjct: 599 KSLCLQYASATQRLISSSVDIPKSEVPSKGSLGLEKSKQGKSRIPSRVLKLAITNSTVTD 658

Query: 655 SILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVG 695
           SILKFE+EFN EL SLGPILS+S+QAEP+LTHLAQ +LGVG
Sbjct: 659 SILKFEKEFNAELHSLGPILSNSAQAEPHLTHLAQWILGVG 699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112407|ref|XP_002316177.1| tubulin gamma complex-associated protein [Populus trichocarpa] gi|222865217|gb|EEF02348.1| tubulin gamma complex-associated protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449461078|ref|XP_004148270.1| PREDICTED: spindle pole body component 97-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359488832|ref|XP_002273947.2| PREDICTED: gamma-tubulin complex component 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255578011|ref|XP_002529877.1| gamma-tubulin complex component, putative [Ricinus communis] gi|223530653|gb|EEF32527.1| gamma-tubulin complex component, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18418288|ref|NP_568346.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|13430652|gb|AAK25948.1|AF360238_1 putative spindle pole body protein [Arabidopsis thaliana] gi|14532826|gb|AAK64095.1| putative spindle pole body protein [Arabidopsis thaliana] gi|332005040|gb|AED92423.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30686344|ref|NP_850838.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|332005039|gb|AED92422.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297807763|ref|XP_002871765.1| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] gi|297317602|gb|EFH48024.1| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|9755764|emb|CAC01736.1| spindle pole body protein-like [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356560679|ref|XP_003548617.1| PREDICTED: gamma-tubulin complex component 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query698
TAIR|locus:2178930679 AT5G17410 [Arabidopsis thalian 0.868 0.892 0.767 2.8e-275
UNIPROTKB|F1SCV1906 TUBGCP2 "Uncharacterized prote 0.790 0.609 0.403 1.9e-125
RGD|1309597905 Tubgcp2 "tubulin, gamma comple 0.823 0.635 0.391 6.4e-125
UNIPROTKB|A5D7P5905 TUBGCP2 "Uncharacterized prote 0.823 0.635 0.390 6.4e-125
MGI|MGI:1921487905 Tubgcp2 "tubulin, gamma comple 0.823 0.635 0.388 1.7e-124
UNIPROTKB|Q9BSJ2902 TUBGCP2 "Gamma-tubulin complex 0.901 0.697 0.377 1.7e-124
UNIPROTKB|Q5ZKY5895 TUBGCP2 "Uncharacterized prote 0.813 0.634 0.388 3.5e-124
UNIPROTKB|E1BZL5906 TUBGCP2 "Uncharacterized prote 0.813 0.626 0.388 3.1e-123
UNIPROTKB|E1C2Y1906 TUBGCP2 "Uncharacterized prote 0.813 0.626 0.388 3.1e-123
ZFIN|ZDB-GENE-031118-150882 tubgcp2 "tubulin, gamma comple 0.882 0.698 0.382 2.8e-122
TAIR|locus:2178930 AT5G17410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2452 (868.2 bits), Expect = 2.8e-275, Sum P(2) = 2.8e-275
 Identities = 484/631 (76%), Positives = 546/631 (86%)

Query:     3 MSYPSTPRWNIERPFLTGRFHQETKAASRFADS--F-----SNNGAEMAIGCYDAGVQEL 55
             +S P+TPRWN +RPFLTGRFHQET+A+S+FADS  F     S++G E AIGCYD  VQEL
Sbjct:     7 ISCPTTPRWNQDRPFLTGRFHQETRASSKFADSKRFTLDSSSSSGVEQAIGCYDTPVQEL 66

Query:    56 LVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLC 115
             +VIDDLLSALVGIEGRYISIKR     HG +  DS + FQVD SMDLALQE+AKRIFPLC
Sbjct:    67 IVIDDLLSALVGIEGRYISIKR----FHGKE--DS-IAFQVDPSMDLALQELAKRIFPLC 119

Query:   116 ESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFY 175
             E ++L  QFVES SQFKNGLVNHAFAA+LRALLLDY+AMVAQLEHQFRLGRLSIQGLWFY
Sbjct:   120 EYYLLIDQFVESSSQFKNGLVNHAFAAALRALLLDYQAMVAQLEHQFRLGRLSIQGLWFY 179

Query:   176 CQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAY 235
             CQPM+GSM+A++AVI +AS   F GS VLNLLQSQAKAMAGDN+VRSLLEKMT+CASNAY
Sbjct:   180 CQPMMGSMRALAAVIQQASTKQFVGSGVLNLLQSQAKAMAGDNSVRSLLEKMTECASNAY 239

Query:   236 LGILERWVYEGVIDDPYGEFFIAEDKSLLK-----DYDAKYWRQRYSLKDGIPSFLANIA 290
             L ILERWVYEG+IDDPYGEFFIAE++SL K     D  AKYW QRYSLKD IP FLANIA
Sbjct:   240 LSILERWVYEGIIDDPYGEFFIAENRSLKKESLSQDSTAKYWSQRYSLKDTIPGFLANIA 299

Query:   291 GKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKE 350
               ILTTGKYLNVMRECGH+ QVP SE SKL  FGSNHHYLEC+K A+EFAS EL+NLIK+
Sbjct:   300 ATILTTGKYLNVMRECGHNVQVPISERSKLTIFGSNHHYLECIKAAHEFASIELVNLIKD 359

Query:   351 RYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAA 410
             +YDL+G+LRSIK YLLLDQGDFLVHFMDIAREEL K++ EI+VEKLQSLLD+ALR+TAAA
Sbjct:   360 KYDLVGRLRSIKHYLLLDQGDFLVHFMDIAREELNKKVHEISVEKLQSLLDLALRTTAAA 419

Query:   411 ADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPL 470
             ADP HEDLTC V+R+SLL    TL G+   T S+S+  E P+SITGLETFSLSYKVQWPL
Sbjct:   420 ADPRHEDLTCCVDRASLL---TTL-GMHKDTDSNSI--EDPMSITGLETFSLSYKVQWPL 473

Query:   471 SIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSML 530
             SIVIS+KAL+KYQ++FR LFHCKHVERQLCGAWQ+HQG R+ N+ GTAI RSSLLCRSML
Sbjct:   474 SIVISKKALSKYQLIFRFLFHCKHVERQLCGAWQIHQGIRSMNSKGTAILRSSLLCRSML 533

Query:   531 KFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKK 590
             KFI+SLLHYLTFEVLEPNWHVMH+RLQ+ +S+DEVIQHHDFFLDKCLR CLL LPD+LKK
Sbjct:   534 KFISSLLHYLTFEVLEPNWHVMHDRLQSTRSVDEVIQHHDFFLDKCLRGCLLLLPDVLKK 593

Query:   591 VERLKSLCLQYAAATQWLISSSIDLPKLEEP 621
             +E+LKS+CLQYAAATQWLISSSID+     P
Sbjct:   594 MEKLKSVCLQYAAATQWLISSSIDINSQSHP 624
GO:0000226 "microtubule cytoskeleton organization" evidence=IEA
GO:0000922 "spindle pole" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005815 "microtubule organizing center" evidence=IEA
UNIPROTKB|F1SCV1 TUBGCP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1309597 Tubgcp2 "tubulin, gamma complex associated protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7P5 TUBGCP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1921487 Tubgcp2 "tubulin, gamma complex associated protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSJ2 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKY5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZL5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2Y1 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031118-150 tubgcp2 "tubulin, gamma complex associated protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020711001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (691 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025404001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (841 aa)
    ••••0.556

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query698
pfam04130528 pfam04130, Spc97_Spc98, Spc97 / Spc98 family 1e-135
>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family Back     alignment and domain information 
 Score =  406 bits (1046), Expect = e-135
 Identities = 177/544 (32%), Positives = 271/544 (49%), Gaps = 38/544 (6%)

Query: 60  DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFV 119
           DLL AL+G+E  Y              +    +   +   +  +L+ +  RI  L   + 
Sbjct: 1   DLLFALLGLESLYFRYD--------KSSESFKIAPNISGLLSPSLRSLLNRILELGTLYR 52

Query: 120 LTGQFVE--SRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR-LGRLSIQGLWFYC 176
              +F+E  S S    G V  A AA+LR +L +Y  +VAQLE +    G L++  L    
Sbjct: 53  RLREFIESISSSSSLYGPVLQALAAALREILNEYLQLVAQLESELLSNGTLTLLQLLAEL 112

Query: 177 QPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYL 236
           QP +  ++ ++ ++ +  + +  G  +L+ L  +  +  GD  +R LL ++   AS  YL
Sbjct: 113 QPAILLLRLLAEIVEEILSKSLKGGQLLSSLYERIASQTGDPDLRELLLRLLNAASQPYL 172

Query: 237 GILERWVYEGVIDDPYGEFFIAEDKS--LLKDYDAKYWRQRYSL-KDGIPSFL-ANIAGK 292
            +L RW+  G +DDPYGEFFI E++S  +L D   +YW +RY+L +D +PSFL   +A K
Sbjct: 173 QMLSRWLLHGELDDPYGEFFIKENESEEVLSDDSDEYWEERYTLREDMLPSFLPKELARK 232

Query: 293 ILTTGKYLNVMRECGHSAQVP------------TSENSKLLSFGSNHHYLECVKVAYEFA 340
           IL  GK LN +REC  S  +                  KL S          +  AY  A
Sbjct: 233 ILEIGKSLNFLRECCKSHPLAKDQSLALSLREALVSLLKLFSSLDTSALELLIDSAYLEA 292

Query: 341 SGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLL 400
           S  LL+L+ E YDL+G L+++K Y LL +GDF+  F++   +EL K  + ++   LQSLL
Sbjct: 293 SKSLLDLLLEEYDLLGHLQALKDYFLLGRGDFISSFLESLFDELDKPANSLSDHALQSLL 352

Query: 401 DIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETF 460
             ALRS+++  DP   DL     + S          V     S          ++GL+  
Sbjct: 353 QEALRSSSSDDDPASSDLDELETKKSDSSETLNRLDVSSLELSS--------GLSGLDAL 404

Query: 461 SLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFN---ASGT 517
           +L YKV WPLS++++ +AL KYQ +FR L   K  E  L   W+     R       +  
Sbjct: 405 TLDYKVPWPLSLILTPEALKKYQRIFRFLLRLKRAEYLLNKLWKELNKRRRLGSTRRNEP 464

Query: 518 AISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCL 577
            + +  LL   ML F+NSL +Y+  +V+E NW  +  +LQ AK +DE+I  H+ +LD  L
Sbjct: 465 LLRKIWLLRFQMLHFVNSLQYYIQVDVIESNWQKLQEQLQKAKDLDELIAAHEDYLDSIL 524

Query: 578 RECL 581
             C 
Sbjct: 525 SGCF 528

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 698
KOG2001734 consensus Gamma-tubulin complex, DGRIP84/SPC97 com 100.0
KOG2065679 consensus Gamma-tubulin ring complex protein [Cyto 100.0
PF04130542 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00 100.0
KOG2000879 consensus Gamma-tubulin complex, DGRIP91/SPC98 com 100.0
KOG43441121 consensus Uncharacterized conserved protein [Funct 99.96
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-112  Score=895.50  Aligned_cols=659  Identities=42%  Similarity=0.682  Sum_probs=563.6

Q ss_pred             CCCCCCCCCcccCCCc-CC-ccccchhhh-----hh-hccc-cccCcccccCCCCCccchHHHHHHHHHHHhcCCCCCce
Q 005396            3 MSYPSTPRWNIERPFL-TG-RFHQETKAA-----SR-FADS-FSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYI   73 (698)
Q Consensus         3 ~~~p~~p~w~~~~~~~-~~-~~~~~~~~~-----~~-~~~~-~~~~~~~~~~~~~~~~~qE~~lv~dLL~~L~G~~g~~~   73 (698)
                      ++.|..|.|...||++ || .+++.....     +. ...+ ..+.....+++.+|.+.||..+++||+++|.|++|+|+
T Consensus        34 i~~~~~s~~~~~rp~~~tG~~~~~s~~~~l~~~~s~r~~~~~~~~~~~~~~is~~~lp~QE~~li~dLl~af~Gv~~ryV  113 (734)
T KOG2001|consen   34 INPKEESELEEKRPALDTGSVQHQSLVSDLVNLLSKRILEGVGIDYFTDYEISDMPLPSQESKLIDDLLYAFVGVEGRYV  113 (734)
T ss_pred             cCccccccccccCcCCCcCccchhhhhhccccchhhhhhhccccccccccCcccCCchhHHHHHHHHHHHHHcCCCccee
Confidence            5678889999999999 77 333333211     11 1112 23446677899999999999999999999999999999


Q ss_pred             eeecccccCCCCCC---CCCccceEecCCCCHhHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 005396           74 SIKRRVNHVHGNDT---YDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLD  150 (698)
Q Consensus        74 ~~~~~~~~~~~~~~---~~~~~~f~i~~~~~~sl~~l~~~il~lg~~~~~l~~fv~~~~~~~~g~v~~Al~~~l~~~L~~  150 (698)
                      +++.    ..+...   ......|.|.|+.+-++++++++++|+|.+|..+++||+.++.+.+|.|++|+|+|++++|.+
T Consensus       114 ~~Q~----~~~s~~~~~~~~~~~F~v~~~fd~~ir~la~eilpl~~yy~~v~~fie~~s~f~~G~vn~alaaAlr~ll~d  189 (734)
T KOG2001|consen  114 SPQY----MIISEAYEKWIDSIFFMVLPRFDLAIRELAEEILPLASYYLLVQDFIEETSFFEYGQVNHALAAALRELLYD  189 (734)
T ss_pred             ecch----hhhhhhhhhhccCcceeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHH
Confidence            9865    222111   012478999999999999999999999999999999999998889999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCcHHHHHHhhhhHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005396          151 YEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQC  230 (698)
Q Consensus       151 y~~~v~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~  230 (698)
                      |+..|.++|++.+.+.+||++||++++|++..|+.++..++.+..+.++||.+|+.|++++..+.||+.++.++.+++++
T Consensus       190 yy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~  269 (734)
T KOG2001|consen  190 YYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRN  269 (734)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhceecCCCCcceEeeCCCc----ccccchhhhcccccc-ccCCChhhHHHHHHHHhhhhHHHHHHH
Q 005396          231 ASNAYLGILERWVYEGVIDDPYGEFFIAEDKSL----LKDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMRE  305 (698)
Q Consensus       231 ~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~----~~d~~~~~W~~~y~l-~~~vP~Fl~~~a~~Il~~GK~l~~Lr~  305 (698)
                      +++||++|+++||+.|.++|||+||||.++...    .+|+.++||++||+| ++.+|.|+.+.|+|||.||||+||+|+
T Consensus       270 as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvRe  349 (734)
T KOG2001|consen  270 ASQPYCTMLEEWIYQGIINDPYQEFMIYDNLITKEDLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVRE  349 (734)
T ss_pred             hcchHHHHHHHHHhcccccCchHhHhhhhcchhhhcCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHHH
Confidence            999999999999999999999999999988322    267899999999999 789999999999999999999999999


Q ss_pred             hCCCCCCCCccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHhHhccCcchHHHHHHHHHHHH
Q 005396          306 CGHSAQVPTSENSKLL-SFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREEL  384 (698)
Q Consensus       306 ~~~~~~~p~~e~~~~~-~f~~~~~~~~~I~~~~~~as~~Ll~ll~~~~~L~~~L~~l~~~fLL~~Gdf~~~f~~~~~~~L  384 (698)
                      ||+.+++|.+.+.... ....+..+.+.|+++|.+|+..++++++++++|.+||+++|+||||.+|||+.+|+|.+.++|
T Consensus       350 C~~~v~~p~~~n~~~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~eEL  429 (734)
T KOG2001|consen  350 CGKIVTIPQSSNEINDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEEEL  429 (734)
T ss_pred             hCccCCCCcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence            9999988766432111 122347899999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccHHHHHHHHHHHHH-hhhcccCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCC---CCCcceeeE
Q 005396          385 MKQLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLETF  460 (698)
Q Consensus       385 ~~~~~~~~~~~L~~~l~~al~-~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~---~~~~~~d~l  460 (698)
                      .|+.+.+++.+|+++|+.|+| .|.+..||++++++|++++++++.+++.+..++....+ ++...+|   ..++|++++
T Consensus       430 ~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~-ans~~dP~~~l~lsGlE~f  508 (734)
T KOG2001|consen  430 TKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHILAIEPEEES-ANSQADPLEHLDLSGLEAF  508 (734)
T ss_pred             hcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHHHhcCccccc-cccccCcchhccccchhhh
Confidence            999999999999999999999 77888999999999999999999999887655532211 1222344   578999999


Q ss_pred             EeeeecCCCcceeeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCch-hhHHhHHHHHHHHHHHHHHHHHH
Q 005396          461 SLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASG-TAISRSSLLCRSMLKFINSLLHY  539 (698)
Q Consensus       461 ~L~Y~v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~-~~~~~~~~lr~~m~~Fv~~l~~Y  539 (698)
                      +|+|+||||||+||++++|.|||+|||++|.||||+++||.+|+.++..|..+..+ .+.++++.||++|++||++|.+|
T Consensus       509 af~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y  588 (734)
T KOG2001|consen  509 AFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYY  588 (734)
T ss_pred             eeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998877666543 45678899999999999999999


Q ss_pred             HHHHhccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 005396          540 LTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-DLLKKVERLKSLCLQYAAATQWLISSSIDLPKL  618 (698)
Q Consensus       540 ~~~~VIe~~w~~~~~~l~~a~~~d~l~~~H~~fL~~i~~~c~L~~~-~l~~~l~~il~~c~~F~~~~~~~~~~~~~~~~~  618 (698)
                      ++.+||||+|+.|+..+++++++|+|+..|+.|||.|++.|||+.+ .+++.+.++..+|+.||++++++++.. ....-
T Consensus       589 ~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~~~~-~~~~~  667 (734)
T KOG2001|consen  589 MTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLTQSD-PTDEE  667 (734)
T ss_pred             HHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhh
Confidence            9999999999999999999999999999999999999999999986 889999999999999999999987321 00100


Q ss_pred             CCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 005396          619 EEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSS  677 (698)
Q Consensus       619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~L~~~  677 (698)
                      .....++-..+.+|      ..+.+    --+.+.+.+.+++++|+++++.|+..|++.
T Consensus       668 ~~~~~~~~~d~~~k------~~~t~----li~~leei~~~~~~~f~~~l~~L~~rlsk~  716 (734)
T KOG2001|consen  668 KNSVGHPQFDEGRK------EDDTL----LISKLEEIISNADKNFRDCLKNLLQRLSKF  716 (734)
T ss_pred             hccccccchhhhhh------hhhHH----HHHHHHHHHHHhHHHHHHHHHHHHHHcccc
Confidence            01111000000111      11111    123345667889999999999999999954

>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton] Back     alignment and domain information
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin Back     alignment and domain information
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton] Back     alignment and domain information
>KOG4344 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query698
3rip_A677 Crystal Structure Of Human Gamma-Tubulin Complex Pr 2e-18
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677 Back     alignment and structure 
Iteration: 1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 115/521 (22%), Positives = 207/521 (39%), Gaps = 68/521 (13%)
Query: 133 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAVI 190
           +G+   AF   L ++L  Y   +  LE +F LG   LSI  + ++         +V  V+
Sbjct: 82  HGIYLRAFCTGLDSVLQPYRQALLDLEQEF-LGDPHLSISHVNYFLDQFQLLFPSVMVVV 140
Query: 191 HKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 250
            +  +    G  +L  +   +    G   VRS LEK+           L  W+  G++ D
Sbjct: 141 EQIKSQKIHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLD 198
Query: 251 PYGEFFIAEDKSL---------------LKDYDAKYWRQ------------------RYS 277
            + EFFI +  S                +     K  R+                  ++S
Sbjct: 199 QHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFS 258
Query: 278 LK-DGIPSFL-ANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-----SFGSNHHYL 330
           L+ + +PS++   +A KIL  G+ + +      +  V  +    +L     +F +  H L
Sbjct: 259 LRVEILPSYIPVRVAEKILFVGESVQMFE----NQNVNLTRKGSILKNQEDTFAAELHRL 314
Query: 331 ------------ECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 378
                       + V       +  L  L+ E  DL+G+L+ IK + LL +G+    F+D
Sbjct: 315 KQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFID 374
Query: 379 IAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE 438
            A+  L      +T   +      +        D     L  ++E      + AT     
Sbjct: 375 TAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDAT--QAR 432
Query: 439 IKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQ 498
              S ++   E P S  G     LSYKVQWPL I+ +   L KY +VF+ L   + V+ +
Sbjct: 433 EGPSRETSPREAPAS--GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAE 490
Query: 499 LCGAWQVHQGARAFNASGTAISRSSLLCRSMLKF-INSLLHYLTFEVLEPNWHVMHNRLQ 557
           L   W +    +   ++ T   +  L  R+ + F +++L +YL  +VLE  +  + +++ 
Sbjct: 491 LQHCWALQMQRKHLKSNQTDAIKWRL--RNHMAFLVDNLQYYLQVDVLESQFSQLLHQIN 548
Query: 558 TAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 598
           + +  + +   HD FL   L +  + L  +   +  +  LC
Sbjct: 549 STRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLC 589

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query698
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 1e-100
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677 Back     alignment and structure
 Score =  322 bits (826), Expect = e-100
 Identities = 129/703 (18%), Positives = 237/703 (33%), Gaps = 124/703 (17%)

Query: 57  VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVD---ASMDLALQEMAKRIFP 113
           +I +LL AL G  G                T++     QV      +  +   +  R+  
Sbjct: 1   MIHELLLALSGYPGSIF-------------TWNKRSGLQVSQDFPFLHPSETSVLNRLCR 47

Query: 114 LCESFVLTGQFVESRSQF---------------KNGLVNHAFAASLRALLLDYEAMVAQL 158
           L   ++   +F+E  +                  +G+   AF   L ++L  Y   +  L
Sbjct: 48  LGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDL 107

Query: 159 EHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGD 217
           E +F     LSI  + ++         +V  V+ +  +    G  +L  +   +    G 
Sbjct: 108 EQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHS--CGGL 165

Query: 218 NTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKD----------- 266
             VRS LEK+           L  W+  G++ D + EFFI +  S               
Sbjct: 166 PPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225

Query: 267 ----------------------YDAKYWRQRYSL-KDGIPSFL-ANIAGKILTTGKYLNV 302
                                        +++SL  + +PS++   +A KIL  G+ + +
Sbjct: 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQM 285

Query: 303 MRECGHSAQ-------------VPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIK 349
                 +                      K     S   + + V       +  L  L+ 
Sbjct: 286 FENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMV 345

Query: 350 ERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAA 409
           E  DL+G+L+ IK + LL +G+    F+D A+  L      +T   +      +      
Sbjct: 346 EESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLL 405

Query: 410 AADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP 469
             D     L  ++E      + AT    + +         +    +G     LSYKVQWP
Sbjct: 406 DDDNLLPLLHLTIEYHGKEHKDAT----QAREGPSRETSPREAPASGWAALGLSYKVQWP 461

Query: 470 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSM 529
           L I+ +   L KY +VF+ L   + V+ +L   W +    +    S    +    L   M
Sbjct: 462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLK-SNQTDAIKWRLRNHM 520

Query: 530 LKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLK 589
              +++L +YL  +VLE  +  + +++ + +  + +   HD FL   L +  + L  +  
Sbjct: 521 AFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFH 580

Query: 590 KVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRD 649
            +  +  LC  + +     +                                       D
Sbjct: 581 CLNEILDLCHSFCSLVSQNLGPL------------------------------------D 604

Query: 650 ATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVL 692
                 +    + F+ +   L  ILSS    +   + LAQL+L
Sbjct: 605 ERGAAQLSILVKGFSRQSSLLFKILSSVRNHQ-INSDLAQLLL 646
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query698
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 100.0
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.6e-92  Score=814.36  Aligned_cols=584  Identities=22%  Similarity=0.363  Sum_probs=481.9

Q ss_pred             HHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecC---CCCHhHHHHHHHHHHHHhHHHHHHHHHhhhcCC--
Q 005396           57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQF--  131 (698)
Q Consensus        57 lv~dLL~~L~G~~g~~~~~~~~~~~~~~~~~~~~~~~f~i~~---~~~~sl~~l~~~il~lg~~~~~l~~fv~~~~~~--  131 (698)
                      ||+|||++|+|++|.||++++             ..+|+|++   .+++|+++++++++++|.+|++|++|++..+..  
T Consensus         1 Ml~dlL~~L~G~~g~~i~~~~-------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~   67 (677)
T 3rip_A            1 MIHELLLALSGYPGSIFTWNK-------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ   67 (677)
T ss_dssp             CHHHHHHHHTTCCCSSSEEET-------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred             ChHHHHHHHcCCCCCceEecC-------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            689999999999999999876             14688988   568999999999999999999999999964321  


Q ss_pred             -------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCcHHHHHHhhhhHHHHHHHHHHHHHHhccCC
Q 005396          132 -------------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFR-LGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN  197 (698)
Q Consensus       132 -------------~~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~-~~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~  197 (698)
                                   ..|+|.+|||++|+++|++|+..|+++|+++. .+.+||+.++.+++|+...|+.|++|+.++..+.
T Consensus        68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~  147 (677)
T 3rip_A           68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK  147 (677)
T ss_dssp             -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                         16999999999999999999999999999985 4679999999999999999999999999987667


Q ss_pred             CcchhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhceecCCCCcceEeeCCCccc----------c-
Q 005396          198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLK----------D-  266 (698)
Q Consensus       198 ~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~----------d-  266 (698)
                      ++||++|+.||+.+  .+|||.+++++.+|+.+|++||+++|..||.+|+|.|||+||||++++....          + 
T Consensus       148 ~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~  225 (677)
T 3rip_A          148 IHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL  225 (677)
T ss_dssp             CCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred             CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence            89999999999987  5999999999999999999999999999999999999999999998753210          0 


Q ss_pred             ----------------------cchhhhcccccc-ccCCChhhHH-HHHHHHhhhhHHHHHHHhCCCCC-----CCCccc
Q 005396          267 ----------------------YDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQ-----VPTSEN  317 (698)
Q Consensus       267 ----------------------~~~~~W~~~y~l-~~~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~~-----~p~~e~  317 (698)
                                            ....+|..+|+| .+++|+|+++ +|+|||.|||++|+||+|+....     ++..+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~  305 (677)
T 3rip_A          226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED  305 (677)
T ss_dssp             ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred             ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence                                  012479999999 6889999987 99999999999999999765421     000000


Q ss_pred             c------ccccCC--CchhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHhHhccCcchHHHHHHHHHHHHhcccc
Q 005396          318 S------KLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD  389 (698)
Q Consensus       318 ~------~~~~f~--~~~~~~~~I~~~~~~as~~Ll~ll~~~~~L~~~L~~l~~~fLL~~Gdf~~~f~~~~~~~L~~~~~  389 (698)
                      .      .+....  ....|...|+++|..||+.|+++++++++|.+||+++|+||||++|||+.+|++.++++|.+|+.
T Consensus       306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~  385 (677)
T 3rip_A          306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT  385 (677)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence            0      011110  12467889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhhcccCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCcceeeEEeeeecCCC
Q 005396          390 EITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP  469 (698)
Q Consensus       390 ~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~Y~v~wP  469 (698)
                      +++..+|+..|+.|++.+....+++.+.+.+.+........ ..-...+  ..+ ......+.+..|||+|+|+|+||||
T Consensus       386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~-~~~~~~~--~~~-~~~~~~~~~~~~~d~l~L~Y~v~~P  461 (677)
T 3rip_A          386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHK-DATQARE--GPS-RETSPREAPASGWAALGLSYKVQWP  461 (677)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC---------------------------CCTTTTEEEEECCCTT
T ss_pred             ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccc-ccccccc--ccc-cccccccCCccchheEEEEEeCCCh
Confidence            99999999999999998766666666677666554321100 0000000  000 0011223457899999999999999


Q ss_pred             cceeeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhhHHhHHHHHHHHHHHHHHHHHHHHHHhccccH
Q 005396          470 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNW  549 (698)
Q Consensus       470 L~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w  549 (698)
                      |++|||+++|.+|++||+|||++||+++.|+++|+.++..|........+++ +.+|++|+|||+++++|++++||+++|
T Consensus       462 L~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w  540 (677)
T 3rip_A          462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQF  540 (677)
T ss_dssp             GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987755433222223444 899999999999999999999999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChh
Q 005396          550 HVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSE  629 (698)
Q Consensus       550 ~~~~~~l~~a~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~~l~~il~~c~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (698)
                      .+|++++++++|+|+|+++|++||++|+++|||+++++.+++.+|+++|++||..+++..      .  ..         
T Consensus       541 ~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~~~------~--~~---------  603 (677)
T 3rip_A          541 SQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNL------G--PL---------  603 (677)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC----------C---------
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhhc------c--cc---------
Confidence            999999999999999999999999999999999999999999999999999999986421      0  00         


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhccccccchHHHHHHHHhccCCC
Q 005396          630 KFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFD  697 (698)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~L~~~~~~~~~~~~L~~ll~rld~n  697 (698)
                                         .+...+++.+++++|++++..|+++|++++ +.++.++|++||+|||||
T Consensus       604 -------------------~~~~~~~~~~l~~~F~~~~~~L~~~l~~l~-~~~~~~~l~~Ll~rLd~N  651 (677)
T 3rip_A          604 -------------------DERGAAQLSILVKGFSRQSSLLFKILSSVR-NHQINSDLAQLLLRLDYN  651 (677)
T ss_dssp             -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHH
T ss_pred             -------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHhCch
Confidence                               111246899999999999999999999984 456779999999999998

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00