Citrus Sinensis ID: 005465
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 695 | 2.2.26 [Sep-21-2011] | |||||||
| P62598 | 596 | Two-component response re | yes | no | 0.787 | 0.917 | 0.485 | 1e-125 | |
| O49397 | 552 | Two-component response re | no | no | 0.709 | 0.893 | 0.429 | 1e-105 | |
| Q9ZWJ9 | 664 | Two-component response re | no | no | 0.513 | 0.537 | 0.482 | 4e-90 | |
| Q940D0 | 690 | Two-component response re | no | no | 0.510 | 0.514 | 0.482 | 9e-88 | |
| Q9FGT7 | 635 | Two-component response re | no | no | 0.630 | 0.689 | 0.434 | 2e-86 | |
| Q8L9Y3 | 382 | Two-component response re | no | no | 0.458 | 0.835 | 0.489 | 4e-73 | |
| Q9FXD6 | 521 | Two-component response re | no | no | 0.339 | 0.452 | 0.564 | 4e-69 | |
| Q7Y0W3 | 341 | Two-component response re | N/A | no | 0.353 | 0.721 | 0.437 | 1e-49 | |
| Q7Y0W5 | 341 | Two-component response re | no | no | 0.353 | 0.721 | 0.437 | 1e-49 | |
| Q9FJ16 | 292 | Putative two-component re | no | no | 0.335 | 0.797 | 0.412 | 7e-45 |
| >sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2 | Back alignment and function desciption |
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Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust.
Identities = 317/653 (48%), Positives = 394/653 (60%), Gaps = 106/653 (16%)
Query: 9 DQFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68
DQFP G+RVLAVDDD TCL +LE+LLR CQYHVTTT+QA AL+LLRENKNKFDLVISDV
Sbjct: 11 DQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDV 70
Query: 69 HMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128
MPDMDGFKLLELVGLEMDLPVIMLS + DPK VMKG+THGACDYLLKPVRIEELKNIWQ
Sbjct: 71 DMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQ 130
Query: 129 HVVRRKKIDAKDQNNSDNQDKPHNGSGQAEGMGNSDQ-NGKLNKKRKDQNEDEDDEDDED 187
HVV R + D K++ +++N DK +GSG EG+GNSDQ NGK N+KRKDQ +++DED +D
Sbjct: 131 HVV-RSRFD-KNRGSNNNGDK-RDGSGN-EGVGNSDQNNGKGNRKRKDQYNEDEDEDRDD 186
Query: 188 DHNHEDPTTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHL 247
+ +D QKK RVVW+VELH+KFVAAVNQLG +KA+PKKILDLMNVEKLTRENVASHL
Sbjct: 187 N---DDSCAQKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHL 243
Query: 248 QKYRLYLKRISCVANQQANMVAALGSSDPSYLRMSSVNGLGNYHTVGGPGQFQNS--TFR 305
QK+RLYLKRIS VANQQA M +S+ +++M+ ++G + G GQ+ R
Sbjct: 244 QKFRLYLKRISGVANQQAIMA----NSELHFMQMNGLDGFHHRPIPVGSGQYHGGAPAMR 299
Query: 306 SFPASGMLGRLNAPAGLGMHGL--PSSGMIPMRHAQNSDNTTNDQGKF-HPALLPGSHS- 361
SFP +G+LGRLN P+G+G+ L P +GM QN D GKF H + LP +HS
Sbjct: 300 SFPPNGILGRLNTPSGIGVRSLSSPPAGMF----LQNQ----TDIGKFHHVSSLPLNHSD 351
Query: 362 -GNILQGMPTSLELDQLQLNKNITSISELPNTKDNTTFHVSS-GFPDARIGFGRSTNPLL 419
GNILQG+P LE DQLQ N N + N N + +S FP F N L+
Sbjct: 352 GGNILQGLPMPLEFDQLQTNNNKSR-----NMNSNKSIAGTSMAFPS----FSTQQNSLI 402
Query: 420 DV-NNNPLFLEGHPQEAHSNKMFGNQSLMSLNSGSSSRLPDH--GRCNDNWSSAVQSSGI 476
NNN + LEGHPQ + P H + ++WS+AV SS
Sbjct: 403 SAPNNNVVVLEGHPQ------------------ATPPGFPGHQINKRLEHWSNAVSSSTH 444
Query: 477 QPNSFSLGGDYKQPTLHPGHLRDNLSTMALPIGNSPCDVSSLHPLSNRFQDPKADLQFQA 536
P P H +++ N DVS PL + DP +
Sbjct: 445 PP--------------PPAHNSNSI--------NHQFDVS---PLPHSRPDPLEWNNVSS 479
Query: 537 VQDAP-CRS-NVMFSPLNSAVSINGDVGPLGQCLD-TNKTFFHRSNEFDSLGQSNFVDHF 593
P C S N + SP LD TN F R+ +FDS + V
Sbjct: 480 SYSIPFCDSANTLSSP----------------ALDTTNPRAFCRNTDFDS---NTNVQPG 520
Query: 594 SMKINEVQRSSMQASSNLKEGYLMGQQKTQ-GSYISTSVDSLEDLFMSSMVKE 645
++ +SSN KEG+++GQQK Q G ++ SL+D+ S+M +E
Sbjct: 521 VFYGPSTDAMALLSSSNPKEGFVVGQQKLQSGGFMVADAGSLDDIVNSTMKQE 573
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Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Arabidopsis thaliana (taxid: 3702) |
| >sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp. japonica GN=EHD1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9FJ16|APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis thaliana GN=APRR4 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 695 | ||||||
| 255548782 | 663 | two-component system sensor histidine ki | 0.913 | 0.957 | 0.633 | 0.0 | |
| 225430376 | 693 | PREDICTED: two-component response regula | 0.912 | 0.914 | 0.610 | 0.0 | |
| 147863919 | 693 | hypothetical protein VITISV_010435 [Viti | 0.912 | 0.914 | 0.611 | 0.0 | |
| 298103726 | 668 | putative B-type response regulator 22 [P | 0.905 | 0.941 | 0.622 | 0.0 | |
| 224141943 | 661 | type-b response regulator [Populus trich | 0.896 | 0.942 | 0.617 | 0.0 | |
| 449455539 | 688 | PREDICTED: two-component response regula | 0.903 | 0.912 | 0.552 | 0.0 | |
| 449485185 | 688 | PREDICTED: LOW QUALITY PROTEIN: two-comp | 0.903 | 0.912 | 0.552 | 0.0 | |
| 296082079 | 667 | unnamed protein product [Vitis vinifera] | 0.874 | 0.911 | 0.583 | 0.0 | |
| 359484783 | 712 | PREDICTED: two-component response regula | 0.923 | 0.901 | 0.540 | 0.0 | |
| 147787458 | 706 | hypothetical protein VITISV_005486 [Viti | 0.926 | 0.912 | 0.528 | 0.0 |
| >gi|255548782|ref|XP_002515447.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] gi|223545391|gb|EEF46896.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/674 (63%), Positives = 493/674 (73%), Gaps = 39/674 (5%)
Query: 1 MTVEHVNG---DQFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLREN 57
MTVE G DQFP G+RVLAVDDDPTCLL+LET LRRCQYHVTTTSQAI+ALK+LREN
Sbjct: 1 MTVEQGAGEAKDQFPIGMRVLAVDDDPTCLLVLETFLRRCQYHVTTTSQAISALKMLREN 60
Query: 58 KNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
KNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS DPKLVMKGITHGACDYLLKP
Sbjct: 61 KNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYSDPKLVMKGITHGACDYLLKP 120
Query: 118 VRIEELKNIWQHVVRRKKIDAKDQNNSDNQDKPHNGSGQAEGMGNSDQNGKLNKKRKDQN 177
VRIEELKNIWQHV+RRKK+D KDQNN DNQDK GSG+A +DQ KLNKKRKDQN
Sbjct: 121 VRIEELKNIWQHVIRRKKVDNKDQNNFDNQDKLPRGSGEA----TADQ--KLNKKRKDQN 174
Query: 178 EDEDDEDDEDDHNHEDPTTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEK 237
EDED++ DE H +EDPTTQKKPRVVWSVELHRKFVAAVNQLG+DKAVPKKILDLMNVEK
Sbjct: 175 EDEDEDRDEHGHENEDPTTQKKPRVVWSVELHRKFVAAVNQLGVDKAVPKKILDLMNVEK 234
Query: 238 LTRENVASHLQKYRLYLKRISCVANQQANMVAALGSSDPSYLRMSSVNGLGNYHTVGGPG 297
LTRENVASHLQKYRLYLKRIS VANQQANMVAALGSSD SYL+M S GLG + + G G
Sbjct: 235 LTRENVASHLQKYRLYLKRISTVANQQANMVAALGSSDASYLQMGS--GLG-FQGIAGAG 291
Query: 298 QFQNSTFRSFPASGMLGRLNAPAGLGMHGLPSSGMIPMRHAQNSDNTTNDQGKFHPALLP 357
QF N+TFR P SGMLGRLN+PAGLGM GLPS G+I + Q + +++N+Q F A+ P
Sbjct: 292 QFHNATFRPLPPSGMLGRLNSPAGLGMRGLPSPGVIQLGQLQGTGHSSNNQSHFQMAVHP 351
Query: 358 GSHSGNILQGMPTSLELDQLQLNKNITSISELP-NTKDNTTFHVSSGFPDARIGFGRSTN 416
G ++GN+LQGMPTSLELDQ+Q NK +T I ELP + D T F VS GF D +I G S +
Sbjct: 352 G-NAGNVLQGMPTSLELDQIQSNKGVTYIRELPTDINDATAFSVSGGFSDTKIMVGSSNS 410
Query: 417 PLLDVNNNPLFLEGHPQEAHSNKMFGNQS---LMSLNSGSSSRLPDHGRCNDNWSSAVQS 473
L +N PL LEG+ Q A K FG S + SL+SG SS LPD GRCNDNWSSAVQS
Sbjct: 411 SFLGASNKPLMLEGNTQGAQDGKEFGKHSSLTVASLDSGFSSHLPDPGRCNDNWSSAVQS 470
Query: 474 SGIQPNSFSLGGDYKQPTLHPGHLRDNLSTMALPIGNSPCDVSSLHPLSNRFQDPKADLQ 533
+G+Q SF+L ++Q TLHP + RD++STM L GN+ D+SS+ L Q+ KADLQ
Sbjct: 471 NGVQSTSFALNDCFRQTTLHPNNSRDSMSTMGLQNGNNAPDISSISTLPIHLQESKADLQ 530
Query: 534 FQAV---------------------QDAPCRSNVMFSPLNSAVSINGDVGPLGQCLDTNK 572
Q QD+ SN + S +N+A I G +G LD
Sbjct: 531 CQITSIRSNAGQIINNAPQGWDDQRQDSMYHSNAVHSSVNTANPIPGTGTLMGHSLDPKN 590
Query: 573 TFFHRSNEFDSLGQSNFVDHFSMKINEVQRSSMQASSNLKEGYLMGQQKTQGSYISTSVD 632
T FHR+ F+S Q+NF+D MK N+V+ SM+ EGY+M QQK Q SY+S +
Sbjct: 591 TIFHRTTSFNSTRQTNFIDMPLMKHNDVENLSMEILMRSNEGYVMAQQKLQSSYVSDNFG 650
Query: 633 SLEDLFMSSMVKEV 646
SLEDL + MVK+V
Sbjct: 651 SLEDL-ANVMVKQV 663
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430376|ref|XP_002282928.1| PREDICTED: two-component response regulator ARR12-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147863919|emb|CAN81109.1| hypothetical protein VITISV_010435 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|298103726|emb|CBM42564.1| putative B-type response regulator 22 [Populus x canadensis] | Back alignment and taxonomy information |
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| >gi|224141943|ref|XP_002324320.1| type-b response regulator [Populus trichocarpa] gi|222865754|gb|EEF02885.1| type-b response regulator [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449455539|ref|XP_004145510.1| PREDICTED: two-component response regulator ARR12-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449485185|ref|XP_004157093.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR12-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|296082079|emb|CBI21084.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359484783|ref|XP_002270833.2| PREDICTED: two-component response regulator ARR12-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147787458|emb|CAN60088.1| hypothetical protein VITISV_005486 [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 695 | ||||||
| TAIR|locus:2040194 | 596 | RR12 "response regulator 12" [ | 0.522 | 0.609 | 0.604 | 1.3e-113 | |
| TAIR|locus:2116587 | 552 | RR10 "response regulator 10" [ | 0.218 | 0.275 | 0.666 | 1.8e-96 | |
| TAIR|locus:2130095 | 664 | RR2 "response regulator 2" [Ar | 0.522 | 0.546 | 0.448 | 1.3e-75 | |
| TAIR|locus:2093668 | 690 | RR1 "response regulator 1" [Ar | 0.538 | 0.542 | 0.431 | 4.8e-71 | |
| TAIR|locus:2065398 | 382 | RR14 "response regulator 14" [ | 0.486 | 0.884 | 0.445 | 9.7e-64 | |
| TAIR|locus:2008585 | 521 | ARR11 "response regulator 11" | 0.348 | 0.464 | 0.538 | 1.1e-62 | |
| UNIPROTKB|Q7Y0W3 | 341 | Q7Y0W3 "Two-component response | 0.201 | 0.410 | 0.407 | 1.4e-42 | |
| UNIPROTKB|Q7Y0W5 | 341 | EHD1 "Two-component response r | 0.201 | 0.410 | 0.407 | 1.4e-42 | |
| TAIR|locus:2155954 | 292 | APRR4 "pseudo-response regulat | 0.335 | 0.797 | 0.362 | 9e-36 | |
| TAIR|locus:2141020 | 535 | APRR2 [Arabidopsis thaliana (t | 0.184 | 0.239 | 0.350 | 6.6e-25 |
| TAIR|locus:2040194 RR12 "response regulator 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1046 (373.3 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
Identities = 237/392 (60%), Positives = 277/392 (70%)
Query: 1 MTVE-HVNG-DQFPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENK 58
MTVE ++ DQFP G+RVLAVDDD QYHVTTT+QA AL+LLRENK
Sbjct: 1 MTVEQNLEALDQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENK 60
Query: 59 NKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
NKFDLVISDV MPDMDGFKLLELVGLEMDLPVIMLS + DPK VMKG+THGACDYLLKPV
Sbjct: 61 NKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPV 120
Query: 119 RIEELKNIWQHVVRRKKIDAKDQNNSDNQDKPHNGSGQAEGMGNSDQN-GKLNKKRKDQX 177
RIEELKNIWQHVVR + D K++ +++N DK +GSG EG+GNSDQN GK N+KRKDQ
Sbjct: 121 RIEELKNIWQHVVR-SRFD-KNRGSNNNGDK-RDGSGN-EGVGNSDQNNGKGNRKRKDQY 176
Query: 178 XXXXXXXXXXXXXXXXPTTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEK 237
QKK RVVW+VELH+KFVAAVNQLG +KA+PKKILDLMNVEK
Sbjct: 177 NEDEDEDRDDNDDS---CAQKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEK 233
Query: 238 LTRENVASHLQKYRLYLKRISCVANQQANMVAALGSSDPSYLRMSSVNGLGNYHTVGGPG 297
LTRENVASHLQK+RLYLKRIS VANQQA M +S+ +++M+ ++G + G G
Sbjct: 234 LTRENVASHLQKFRLYLKRISGVANQQAIMA----NSELHFMQMNGLDGFHHRPIPVGSG 289
Query: 298 QFQNST--FRSFPASGMLGRLNAPAGLGMHGL--PSSGMIPMRHAQNSDNTTNDQGKFHP 353
Q+ RSFP +G+LGRLN P+G+G+ L P +GM QN D GKFH
Sbjct: 290 QYHGGAPAMRSFPPNGILGRLNTPSGIGVRSLSSPPAGMF----LQNQ----TDIGKFHH 341
Query: 354 -ALLPGSHS--GNILQGMPTSLELDQLQLNKN 382
+ LP +HS GNILQG+P LE DQLQ N N
Sbjct: 342 VSSLPLNHSDGGNILQGLPMPLEFDQLQTNNN 373
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| TAIR|locus:2116587 RR10 "response regulator 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2130095 RR2 "response regulator 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2093668 RR1 "response regulator 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2065398 RR14 "response regulator 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2008585 ARR11 "response regulator 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q7Y0W3 Q7Y0W3 "Two-component response regulator EHD1" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q7Y0W5 EHD1 "Two-component response regulator EHD1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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| TAIR|locus:2155954 APRR4 "pseudo-response regulator 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2141020 APRR2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00032706001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (682 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 695 | |||
| COG0784 | 130 | COG0784, CheY, FOG: CheY-like receiver [Signal tra | 1e-26 | |
| cd00156 | 113 | cd00156, REC, Signal receiver domain; originally t | 2e-26 | |
| pfam00072 | 111 | pfam00072, Response_reg, Response regulator receiv | 2e-26 | |
| COG2204 | 464 | COG2204, AtoC, Response regulator containing CheY- | 8e-26 | |
| COG0745 | 229 | COG0745, OmpR, Response regulators consisting of a | 7e-23 | |
| TIGR01557 | 57 | TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai | 3e-22 | |
| CHL00148 | 240 | CHL00148, orf27, Ycf27; Reviewed | 7e-17 | |
| COG3437 | 360 | COG3437, COG3437, Response regulator containing a | 1e-16 | |
| COG3706 | 435 | COG3706, PleD, Response regulator containing a Che | 1e-16 | |
| COG4753 | 475 | COG4753, COG4753, Response regulator containing Ch | 2e-16 | |
| PLN03162 | 526 | PLN03162, PLN03162, golden-2 like transcription fa | 3e-16 | |
| TIGR01818 | 463 | TIGR01818, ntrC, nitrogen regulation protein NR(I) | 7e-14 | |
| PRK15115 | 444 | PRK15115, PRK15115, response regulator GlrR; Provi | 3e-13 | |
| COG2197 | 211 | COG2197, CitB, Response regulator containing a Che | 4e-13 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 2e-12 | |
| PRK09581 | 457 | PRK09581, pleD, response regulator PleD; Reviewed | 2e-12 | |
| COG4565 | 224 | COG4565, CitB, Response regulator of citrate/malat | 3e-12 | |
| PRK10365 | 441 | PRK10365, PRK10365, transcriptional regulatory pro | 3e-11 | |
| smart00448 | 55 | smart00448, REC, cheY-homologous receiver domain | 3e-11 | |
| COG4566 | 202 | COG4566, TtrR, Response regulator [Signal transduc | 5e-11 | |
| PRK15479 | 221 | PRK15479, PRK15479, transcriptional regulatory pro | 3e-10 | |
| PRK15347 | 921 | PRK15347, PRK15347, two component system sensor ki | 3e-10 | |
| PRK10610 | 129 | PRK10610, PRK10610, chemotaxis regulatory protein | 4e-10 | |
| COG3947 | 361 | COG3947, COG3947, Response regulator containing Ch | 5e-10 | |
| PRK11361 | 457 | PRK11361, PRK11361, acetoacetate metabolism regula | 8e-10 | |
| PRK09390 | 202 | PRK09390, fixJ, response regulator FixJ; Provision | 1e-09 | |
| PRK09468 | 239 | PRK09468, ompR, osmolarity response regulator; Pro | 2e-09 | |
| PRK10923 | 469 | PRK10923, glnG, nitrogen regulation protein NR(I); | 2e-09 | |
| PRK10955 | 232 | PRK10955, PRK10955, DNA-binding transcriptional re | 4e-09 | |
| TIGR02154 | 226 | TIGR02154, PhoB, phosphate regulon transcriptional | 1e-08 | |
| PRK10643 | 222 | PRK10643, PRK10643, DNA-binding transcriptional re | 2e-08 | |
| TIGR01387 | 218 | TIGR01387, cztR_silR_copR, heavy metal response re | 2e-08 | |
| PRK09959 | 1197 | PRK09959, PRK09959, hybrid sensory histidine kinas | 2e-08 | |
| PRK10841 | 924 | PRK10841, PRK10841, hybrid sensory kinase in two-c | 3e-08 | |
| PRK11107 | 919 | PRK11107, PRK11107, hybrid sensory histidine kinas | 3e-08 | |
| TIGR02956 | 968 | TIGR02956, TMAO_torS, TMAO reductase sytem sensor | 4e-08 | |
| COG4567 | 182 | COG4567, COG4567, Response regulator consisting of | 1e-07 | |
| COG3707 | 194 | COG3707, AmiR, Response regulator with putative an | 1e-07 | |
| PRK10430 | 239 | PRK10430, PRK10430, DNA-binding transcriptional ac | 3e-07 | |
| PRK11083 | 228 | PRK11083, PRK11083, DNA-binding response regulator | 3e-07 | |
| PRK09581 | 457 | PRK09581, pleD, response regulator PleD; Reviewed | 5e-07 | |
| TIGR02875 | 262 | TIGR02875, spore_0_A, sporulation transcription fa | 5e-07 | |
| PRK10766 | 221 | PRK10766, PRK10766, DNA-binding transcriptional re | 6e-07 | |
| COG3279 | 244 | COG3279, LytT, Response regulator of the LytR/AlgR | 2e-06 | |
| pfam00249 | 47 | pfam00249, Myb_DNA-binding, Myb-like DNA-binding d | 5e-06 | |
| PRK11517 | 223 | PRK11517, PRK11517, transcriptional regulatory pro | 6e-06 | |
| PRK09836 | 227 | PRK09836, PRK09836, DNA-binding transcriptional ac | 1e-05 | |
| PRK10529 | 225 | PRK10529, PRK10529, DNA-binding transcriptional ac | 1e-04 | |
| PRK10161 | 229 | PRK10161, PRK10161, transcriptional regulator PhoB | 1e-04 | |
| PRK10816 | 223 | PRK10816, PRK10816, DNA-binding transcriptional re | 2e-04 | |
| PRK10693 | 303 | PRK10693, PRK10693, response regulator of RpoS; Pr | 2e-04 | |
| COG2201 | 350 | COG2201, CheB, Chemotaxis response regulator conta | 2e-04 | |
| TIGR02915 | 445 | TIGR02915, PEP_resp_reg, PEP-CTERM-box response re | 3e-04 | |
| PRK11697 | 238 | PRK11697, PRK11697, putative two-component respons | 6e-04 | |
| PRK10046 | 225 | PRK10046, dpiA, two-component response regulator D | 7e-04 | |
| COG3706 | 435 | COG3706, PleD, Response regulator containing a Che | 0.001 | |
| PRK10710 | 240 | PRK10710, PRK10710, DNA-binding transcriptional re | 0.002 | |
| PRK13557 | 540 | PRK13557, PRK13557, histidine kinase; Provisional | 0.003 |
| >gnl|CDD|223855 COG0784, CheY, FOG: CheY-like receiver [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-26
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAIT-ALKLLRENKNKFDLVISDVHM 70
SGLRVL VDD+P LL+ LL Y V + AL+LLRE + DL++ D++M
Sbjct: 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINM 61
Query: 71 PDMDGFKLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEE-LKNIWQ 128
P MDG +LL + ++PVI+L+ D + + GA DYL KP+ +EE L +
Sbjct: 62 PGMDGIELLRRLRARGPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALR 121
Query: 129 HVVRRKKID 137
++ R +
Sbjct: 122 RLLARAAAE 130
|
Length = 130 |
| >gnl|CDD|238088 cd00156, REC, Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers | Back alignment and domain information |
|---|
| >gnl|CDD|200976 pfam00072, Response_reg, Response regulator receiver domain | Back alignment and domain information |
|---|
| >gnl|CDD|225114 COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|223816 COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class | Back alignment and domain information |
|---|
| >gnl|CDD|214376 CHL00148, orf27, Ycf27; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|225971 COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|226229 COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|227095 COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233585 TIGR01818, ntrC, nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
| >gnl|CDD|185070 PRK15115, PRK15115, response regulator GlrR; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225107 COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236577 PRK09581, pleD, response regulator PleD; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|226931 COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214668 smart00448, REC, cheY-homologous receiver domain | Back alignment and domain information |
|---|
| >gnl|CDD|226932 COG4566, TtrR, Response regulator [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|185376 PRK15479, PRK15479, transcriptional regulatory protein TctD; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|170568 PRK10610, PRK10610, chemotaxis regulatory protein CheY; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226456 COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|181815 PRK09390, fixJ, response regulator FixJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|181883 PRK09468, ompR, osmolarity response regulator; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182842 PRK10923, glnG, nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182864 PRK10955, PRK10955, DNA-binding transcriptional regulator CpxR; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|131209 TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB | Back alignment and domain information |
|---|
| >gnl|CDD|182612 PRK10643, PRK10643, DNA-binding transcriptional regulator BasR; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|130454 TIGR01387, cztR_silR_copR, heavy metal response regulator | Back alignment and domain information |
|---|
| >gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >gnl|CDD|226933 COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|226230 COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|182454 PRK10430, PRK10430, DNA-binding transcriptional activator DcuR; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236838 PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236577 PRK09581, pleD, response regulator PleD; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|131922 TIGR02875, spore_0_A, sporulation transcription factor Spo0A | Back alignment and domain information |
|---|
| >gnl|CDD|182711 PRK10766, PRK10766, DNA-binding transcriptional regulator TorR; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225818 COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|183172 PRK11517, PRK11517, transcriptional regulatory protein YedW; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182102 PRK09836, PRK09836, DNA-binding transcriptional activator CusR; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182522 PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182277 PRK10161, PRK10161, transcriptional regulator PhoB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182755 PRK10816, PRK10816, DNA-binding transcriptional regulator PhoP; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182652 PRK10693, PRK10693, response regulator of RpoS; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225111 COG2201, CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|234057 TIGR02915, PEP_resp_reg, PEP-CTERM-box response regulator transcription factor | Back alignment and domain information |
|---|
| >gnl|CDD|236956 PRK11697, PRK11697, putative two-component response-regulatory protein YehT; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182208 PRK10046, dpiA, two-component response regulator DpiA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226229 COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|182665 PRK10710, PRK10710, DNA-binding transcriptional regulator BaeR; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237425 PRK13557, PRK13557, histidine kinase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 695 | |||
| COG0745 | 229 | OmpR Response regulators consisting of a CheY-like | 99.85 | |
| PLN03162 | 526 | golden-2 like transcription factor; Provisional | 99.82 | |
| COG4753 | 475 | Response regulator containing CheY-like receiver d | 99.79 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.77 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 99.76 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 99.75 | |
| COG2197 | 211 | CitB Response regulator containing a CheY-like rec | 99.71 | |
| COG0784 | 130 | CheY FOG: CheY-like receiver [Signal transduction | 99.7 | |
| PRK10046 | 225 | dpiA two-component response regulator DpiA; Provis | 99.68 | |
| COG4566 | 202 | TtrR Response regulator [Signal transduction mecha | 99.68 | |
| PLN03029 | 222 | type-a response regulator protein; Provisional | 99.67 | |
| PRK10529 | 225 | DNA-binding transcriptional activator KdpE; Provis | 99.66 | |
| COG3437 | 360 | Response regulator containing a CheY-like receiver | 99.66 | |
| PRK11173 | 237 | two-component response regulator; Provisional | 99.65 | |
| PRK10816 | 223 | DNA-binding transcriptional regulator PhoP; Provis | 99.65 | |
| PRK10766 | 221 | DNA-binding transcriptional regulator TorR; Provis | 99.64 | |
| PRK09836 | 227 | DNA-binding transcriptional activator CusR; Provis | 99.64 | |
| PRK10643 | 222 | DNA-binding transcriptional regulator BasR; Provis | 99.64 | |
| PRK11517 | 223 | transcriptional regulatory protein YedW; Provision | 99.62 | |
| TIGR02154 | 226 | PhoB phosphate regulon transcriptional regulatory | 99.62 | |
| PRK10336 | 219 | DNA-binding transcriptional regulator QseB; Provis | 99.62 | |
| PRK10701 | 240 | DNA-binding transcriptional regulator RstA; Provis | 99.62 | |
| PRK10955 | 232 | DNA-binding transcriptional regulator CpxR; Provis | 99.62 | |
| PRK10161 | 229 | transcriptional regulator PhoB; Provisional | 99.61 | |
| PRK13856 | 241 | two-component response regulator VirG; Provisional | 99.61 | |
| CHL00148 | 240 | orf27 Ycf27; Reviewed | 99.61 | |
| TIGR01557 | 57 | myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c | 99.61 | |
| COG3706 | 435 | PleD Response regulator containing a CheY-like rec | 99.6 | |
| PRK09468 | 239 | ompR osmolarity response regulator; Provisional | 99.6 | |
| PRK10430 | 239 | DNA-binding transcriptional activator DcuR; Provis | 99.6 | |
| KOG0519 | 786 | consensus Sensory transduction histidine kinase [S | 99.6 | |
| TIGR03787 | 227 | marine_sort_RR proteobacterial dedicated sortase s | 99.59 | |
| PRK11083 | 228 | DNA-binding response regulator CreB; Provisional | 99.59 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 99.58 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 99.57 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 99.57 | |
| PRK10840 | 216 | transcriptional regulator RcsB; Provisional | 99.57 | |
| PRK09958 | 204 | DNA-binding transcriptional activator EvgA; Provis | 99.56 | |
| TIGR01387 | 218 | cztR_silR_copR heavy metal response regulator. Mem | 99.55 | |
| PRK09483 | 217 | response regulator; Provisional | 99.54 | |
| PRK09581 | 457 | pleD response regulator PleD; Reviewed | 99.54 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 99.53 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 99.53 | |
| PRK10360 | 196 | DNA-binding transcriptional activator UhpA; Provis | 99.53 | |
| PRK11697 | 238 | putative two-component response-regulatory protein | 99.52 | |
| PRK14084 | 246 | two-component response regulator; Provisional | 99.52 | |
| TIGR02875 | 262 | spore_0_A sporulation transcription factor Spo0A. | 99.51 | |
| PRK10710 | 240 | DNA-binding transcriptional regulator BaeR; Provis | 99.51 | |
| PRK09935 | 210 | transcriptional regulator FimZ; Provisional | 99.5 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 99.5 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 99.5 | |
| PRK15479 | 221 | transcriptional regulatory protein TctD; Provision | 99.5 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 99.5 | |
| COG4567 | 182 | Response regulator consisting of a CheY-like recei | 99.49 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 99.49 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 99.48 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 99.47 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 99.47 | |
| PRK12555 | 337 | chemotaxis-specific methylesterase; Provisional | 99.47 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 99.46 | |
| PRK09390 | 202 | fixJ response regulator FixJ; Provisional | 99.46 | |
| PRK10610 | 129 | chemotaxis regulatory protein CheY; Provisional | 99.45 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 99.44 | |
| PRK13435 | 145 | response regulator; Provisional | 99.43 | |
| PRK09581 | 457 | pleD response regulator PleD; Reviewed | 99.42 | |
| PRK00742 | 354 | chemotaxis-specific methylesterase; Provisional | 99.39 | |
| PRK10403 | 215 | transcriptional regulator NarP; Provisional | 99.39 | |
| PRK15369 | 211 | two component system sensor kinase SsrB; Provision | 99.38 | |
| PRK13558 | 665 | bacterio-opsin activator; Provisional | 99.37 | |
| PRK11475 | 207 | DNA-binding transcriptional activator BglJ; Provis | 99.37 | |
| PRK10100 | 216 | DNA-binding transcriptional regulator CsgD; Provis | 99.36 | |
| PRK10651 | 216 | transcriptional regulator NarL; Provisional | 99.35 | |
| COG2201 | 350 | CheB Chemotaxis response regulator containing a Ch | 99.31 | |
| PRK15411 | 207 | rcsA colanic acid capsular biosynthesis activation | 99.31 | |
| PRK09191 | 261 | two-component response regulator; Provisional | 99.29 | |
| COG3707 | 194 | AmiR Response regulator with putative antiterminat | 99.27 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 99.25 | |
| cd00156 | 113 | REC Signal receiver domain; originally thought to | 99.23 | |
| PRK13557 | 540 | histidine kinase; Provisional | 99.16 | |
| PRK10693 | 303 | response regulator of RpoS; Provisional | 99.08 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.88 | |
| COG3279 | 244 | LytT Response regulator of the LytR/AlgR family [T | 98.81 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 98.28 | |
| COG3706 | 435 | PleD Response regulator containing a CheY-like rec | 97.97 | |
| smart00448 | 55 | REC cheY-homologous receiver domain. CheY regulate | 97.51 | |
| PF06490 | 109 | FleQ: Flagellar regulatory protein FleQ; InterPro: | 97.28 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 96.36 | |
| PRK02261 | 137 | methylaspartate mutase subunit S; Provisional | 95.8 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 95.75 | |
| cd02067 | 119 | B12-binding B12 binding domain (B12-BD). This doma | 95.46 | |
| PF03709 | 115 | OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal | 95.08 | |
| PF00249 | 48 | Myb_DNA-binding: Myb-like DNA-binding domain; Inte | 94.46 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 93.9 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 92.76 | |
| TIGR03815 | 322 | CpaE_hom_Actino helicase/secretion neighborhood Cp | 92.38 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 92.22 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 92.03 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 91.66 | |
| TIGR01501 | 134 | MthylAspMutase methylaspartate mutase, S subunit. | 91.52 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 90.22 | |
| cd02070 | 201 | corrinoid_protein_B12-BD B12 binding domain of cor | 88.39 | |
| PF02310 | 121 | B12-binding: B12 binding domain; InterPro: IPR0061 | 88.23 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 86.52 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 86.48 | |
| cd02069 | 213 | methionine_synthase_B12_BD B12 binding domain of m | 86.22 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 84.89 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 84.18 | |
| COG4999 | 140 | Uncharacterized domain of BarA-like signal transdu | 83.58 | |
| cd02072 | 128 | Glm_B12_BD B12 binding domain of glutamate mutase | 83.49 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 83.39 | |
| smart00426 | 68 | TEA TEA domain. | 83.05 |
| >COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=191.09 Aligned_cols=118 Identities=34% Similarity=0.524 Sum_probs=111.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~--e~dIPVIm 92 (695)
++|||||||+..+..|...|+..||.|..+.++++|++.+.. . ||+||+|+.||++||++++++++. ....||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 589999999999999999999999999999999999999874 3 999999999999999999999983 46789999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+|+.++......++++||+|||.|||+++||.++++.++|+..
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 9999999999999999999999999999999999999998864
|
|
| >PLN03162 golden-2 like transcription factor; Provisional | Back alignment and domain information |
|---|
| >COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
| >COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
| >COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10046 dpiA two-component response regulator DpiA; Provisional | Back alignment and domain information |
|---|
| >COG4566 TtrR Response regulator [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03029 type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
| >PRK10529 DNA-binding transcriptional activator KdpE; Provisional | Back alignment and domain information |
|---|
| >COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11173 two-component response regulator; Provisional | Back alignment and domain information |
|---|
| >PRK10816 DNA-binding transcriptional regulator PhoP; Provisional | Back alignment and domain information |
|---|
| >PRK10766 DNA-binding transcriptional regulator TorR; Provisional | Back alignment and domain information |
|---|
| >PRK09836 DNA-binding transcriptional activator CusR; Provisional | Back alignment and domain information |
|---|
| >PRK10643 DNA-binding transcriptional regulator BasR; Provisional | Back alignment and domain information |
|---|
| >PRK11517 transcriptional regulatory protein YedW; Provisional | Back alignment and domain information |
|---|
| >TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB | Back alignment and domain information |
|---|
| >PRK10336 DNA-binding transcriptional regulator QseB; Provisional | Back alignment and domain information |
|---|
| >PRK10701 DNA-binding transcriptional regulator RstA; Provisional | Back alignment and domain information |
|---|
| >PRK10955 DNA-binding transcriptional regulator CpxR; Provisional | Back alignment and domain information |
|---|
| >PRK10161 transcriptional regulator PhoB; Provisional | Back alignment and domain information |
|---|
| >PRK13856 two-component response regulator VirG; Provisional | Back alignment and domain information |
|---|
| >CHL00148 orf27 Ycf27; Reviewed | Back alignment and domain information |
|---|
| >TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class | Back alignment and domain information |
|---|
| >COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09468 ompR osmolarity response regulator; Provisional | Back alignment and domain information |
|---|
| >PRK10430 DNA-binding transcriptional activator DcuR; Provisional | Back alignment and domain information |
|---|
| >KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator | Back alignment and domain information |
|---|
| >PRK11083 DNA-binding response regulator CreB; Provisional | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >PRK10840 transcriptional regulator RcsB; Provisional | Back alignment and domain information |
|---|
| >PRK09958 DNA-binding transcriptional activator EvgA; Provisional | Back alignment and domain information |
|---|
| >TIGR01387 cztR_silR_copR heavy metal response regulator | Back alignment and domain information |
|---|
| >PRK09483 response regulator; Provisional | Back alignment and domain information |
|---|
| >PRK09581 pleD response regulator PleD; Reviewed | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10360 DNA-binding transcriptional activator UhpA; Provisional | Back alignment and domain information |
|---|
| >PRK11697 putative two-component response-regulatory protein YehT; Provisional | Back alignment and domain information |
|---|
| >PRK14084 two-component response regulator; Provisional | Back alignment and domain information |
|---|
| >TIGR02875 spore_0_A sporulation transcription factor Spo0A | Back alignment and domain information |
|---|
| >PRK10710 DNA-binding transcriptional regulator BaeR; Provisional | Back alignment and domain information |
|---|
| >PRK09935 transcriptional regulator FimZ; Provisional | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
| >PRK15479 transcriptional regulatory protein TctD; Provisional | Back alignment and domain information |
|---|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
| >COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PRK12555 chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
| >PRK09390 fixJ response regulator FixJ; Provisional | Back alignment and domain information |
|---|
| >PRK10610 chemotaxis regulatory protein CheY; Provisional | Back alignment and domain information |
|---|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
| >PRK13435 response regulator; Provisional | Back alignment and domain information |
|---|
| >PRK09581 pleD response regulator PleD; Reviewed | Back alignment and domain information |
|---|
| >PRK00742 chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
| >PRK10403 transcriptional regulator NarP; Provisional | Back alignment and domain information |
|---|
| >PRK15369 two component system sensor kinase SsrB; Provisional | Back alignment and domain information |
|---|
| >PRK13558 bacterio-opsin activator; Provisional | Back alignment and domain information |
|---|
| >PRK11475 DNA-binding transcriptional activator BglJ; Provisional | Back alignment and domain information |
|---|
| >PRK10100 DNA-binding transcriptional regulator CsgD; Provisional | Back alignment and domain information |
|---|
| >PRK10651 transcriptional regulator NarL; Provisional | Back alignment and domain information |
|---|
| >COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional | Back alignment and domain information |
|---|
| >PRK09191 two-component response regulator; Provisional | Back alignment and domain information |
|---|
| >COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK10693 response regulator of RpoS; Provisional | Back alignment and domain information |
|---|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
| >COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00448 REC cheY-homologous receiver domain | Back alignment and domain information |
|---|
| >PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e | Back alignment and domain information |
|---|
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
| >PRK02261 methylaspartate mutase subunit S; Provisional | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >cd02067 B12-binding B12 binding domain (B12-BD) | Back alignment and domain information |
|---|
| >PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure | Back alignment and domain information |
|---|
| >PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins | Back alignment and domain information |
|---|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
| >TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein | Back alignment and domain information |
|---|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01501 MthylAspMutase methylaspartate mutase, S subunit | Back alignment and domain information |
|---|
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
| >cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins | Back alignment and domain information |
|---|
| >PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) | Back alignment and domain information |
|---|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
| >cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase | Back alignment and domain information |
|---|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
| >COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) | Back alignment and domain information |
|---|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
| >smart00426 TEA TEA domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 695 | ||||
| 1irz_A | 64 | Solution Structure Of Arr10-B Belonging To The Garp | 1e-22 | ||
| 3jte_A | 143 | Crystal Structure Of Response Regulator Receiver Do | 5e-10 | ||
| 1l5y_A | 155 | Crystal Structure Of Mg2+ / Bef3-bound Receiver Dom | 6e-09 | ||
| 1qkk_A | 155 | Crystal Structure Of The Receiver Domain And Linker | 7e-09 | ||
| 3gt7_A | 154 | Crystal Structure Of Signal Receiver Domain Of Sign | 4e-08 | ||
| 2ayx_A | 254 | Solution Structure Of The E.Coli Rcsc C-Terminus (R | 6e-08 | ||
| 2ayz_A | 133 | Solution Structure Of The E.Coli Rcsc C-Terminus (R | 9e-08 | ||
| 3nhz_A | 125 | Structure Of N-Terminal Domain Of Mtra Length = 125 | 2e-07 | ||
| 1dbw_A | 126 | Crystal Structure Of Fixj-N Length = 126 | 1e-06 | ||
| 1mvo_A | 136 | Crystal Structure Of The Phop Receiver Domain From | 1e-06 | ||
| 3eq2_A | 394 | Structure Of Hexagonal Crystal Form Of Pseudomonas | 1e-06 | ||
| 3t6k_A | 136 | Crystal Structure Of A Hypothetical Response Regula | 1e-06 | ||
| 3r0j_A | 250 | Structure Of Phop From Mycobacterium Tuberculosis L | 1e-06 | ||
| 3f7a_A | 394 | Structure Of Orthorhombic Crystal Form Of Pseudomon | 2e-06 | ||
| 1zit_A | 121 | Structure Of The Receiver Domain Of Ntrc4 From Aqui | 2e-06 | ||
| 3nnn_A | 122 | Bef3 Activated Drrd Receiver Domain Length = 122 | 3e-06 | ||
| 1ys6_A | 233 | Crystal Structure Of The Response Regulatory Protei | 8e-06 | ||
| 1d5w_A | 126 | Phosphorylated Fixj Receiver Domain Length = 126 | 8e-06 | ||
| 1p6u_A | 129 | Nmr Structure Of The Bef3-Activated Structure Of Th | 1e-05 | ||
| 1zgz_A | 122 | Crystal Structure Of The Receiver Domain Of Tmao Re | 2e-05 | ||
| 1dc7_A | 124 | Structure Of A Transiently Phosphorylated "switch" | 2e-05 | ||
| 1j56_A | 124 | Minimized Average Structure Of Beryllofluoride-Acti | 2e-05 | ||
| 1krw_A | 124 | Solution Structure And Backbone Dynamics Of Beryllo | 2e-05 | ||
| 1kgs_A | 225 | Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG | 2e-05 | ||
| 3dzd_A | 368 | Crystal Structure Of Sigma54 Activator Ntrc4 In The | 3e-05 | ||
| 1zy2_A | 150 | Crystal Structure Of The Phosphorylated Receiver Do | 4e-05 | ||
| 1nxo_A | 120 | Micarec Ph7.0 Length = 120 | 4e-05 | ||
| 3f6p_A | 120 | Crystal Structure Of Unphosphorelated Receiver Doma | 4e-05 | ||
| 2zwm_A | 130 | Crystal Structure Of Yycf Receiver Domain From Baci | 4e-05 | ||
| 1w25_A | 459 | Response Regulator Pled In Complex With C-digmp Len | 5e-05 | ||
| 3cfy_A | 137 | Crystal Structure Of Signal Receiver Domain Of Puta | 7e-05 | ||
| 2wb4_A | 459 | Activated Diguanylate Cyclase Pled In Complex With | 7e-05 | ||
| 1zh2_A | 121 | Crystal Structure Of The Calcium-Bound Receiver Dom | 1e-04 | ||
| 1dz3_A | 130 | Domain-Swapping In The Sporulation Response Regulat | 1e-04 | ||
| 1dc8_A | 124 | Structure Of A Transiently Phosphorylated "switch" | 1e-04 | ||
| 1m5t_A | 124 | Crystal Structure Of The Response Regulator Divk Le | 2e-04 | ||
| 3to5_A | 134 | High Resolution Structure Of Chey3 From Vibrio Chol | 2e-04 | ||
| 1u0s_Y | 118 | Chemotaxis Kinase Chea P2 Domain In Complex With Re | 2e-04 | ||
| 3tmy_A | 120 | Chey From Thermotoga Maritima (Mn-Iii) Length = 120 | 2e-04 | ||
| 1nxt_A | 120 | Micarec Ph 4.0 Length = 120 | 3e-04 | ||
| 1f51_E | 119 | A Transient Interaction Between Two Phosphorelay Pr | 3e-04 | ||
| 3ffx_A | 128 | Crystal Structure Of Chey Triple Mutant F14e, N59r, | 4e-04 | ||
| 1zes_A | 125 | Bef3- Activated Phob Receiver Domain Length = 125 | 4e-04 | ||
| 1b00_A | 127 | Phob Receiver Domain From Escherichia Coli Length = | 4e-04 | ||
| 1ab5_A | 125 | Structure Of Chey Mutant F14n, V21t Length = 125 | 4e-04 | ||
| 3eod_A | 130 | Crystal Structure Of N-Terminal Domain Of E. Coli R | 4e-04 | ||
| 1d4z_A | 128 | Crystal Structure Of Chey-95iv, A Hyperactive Chey | 4e-04 | ||
| 1yio_A | 208 | Crystallographic Structure Of Response Regulator St | 4e-04 | ||
| 3fft_A | 128 | Crystal Structure Of Chey Double Mutant F14e, E89r | 4e-04 | ||
| 1srr_A | 124 | Crystal Structure Of A Phosphatase Resistant Mutant | 4e-04 | ||
| 1ehc_A | 128 | Structure Of Signal Transduction Protein Chey Lengt | 6e-04 | ||
| 1e6l_A | 127 | Two-Component Signal Transduction System D13a Mutan | 6e-04 | ||
| 1eay_A | 128 | Chey-Binding (P2) Domain Of Chea In Complex With Ch | 6e-04 | ||
| 1udr_A | 129 | Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Rep | 6e-04 | ||
| 1djm_A | 129 | Solution Structure Of Bef3-Activated Chey From Esch | 6e-04 | ||
| 1e6k_A | 130 | Two-Component Signal Transduction System D12a Mutan | 6e-04 | ||
| 1cey_A | 128 | Assignments, Secondary Structure, Global Fold, And | 6e-04 | ||
| 1cye_A | 129 | Three Dimensional Structure Of Chemotactic Che Y Pr | 7e-04 | ||
| 3fgz_A | 128 | Crystal Structure Of Chey Triple Mutant F14e, N59m, | 7e-04 | ||
| 1ymu_A | 130 | Signal Transduction Protein Chey Mutant With Met 17 | 7e-04 | ||
| 1ymv_A | 129 | Signal Transduction Protein Chey Mutant With Phe 14 | 7e-04 | ||
| 1mih_A | 129 | A Role For Chey Glu 89 In Chez-Mediated Dephosphory | 7e-04 | ||
| 3oo0_A | 129 | Structure Of Apo Chey A113p Length = 129 | 7e-04 | ||
| 1pux_A | 124 | Nmr Solution Structure Of Bef3-Activated Spo0f, 20 | 7e-04 | ||
| 3myy_A | 128 | Structure Of E. Coli Chey Mutant A113p Bound To Ber | 7e-04 | ||
| 3q15_C | 126 | Crystal Structure Of Raph Complexed With Spo0f Leng | 7e-04 | ||
| 3olx_A | 129 | Structural And Functional Effects Of Substitution A | 8e-04 | ||
| 3q9s_A | 249 | Crystal Structure Of Rra(1-215) From Deinococcus Ra | 8e-04 | ||
| 1qmp_A | 130 | Phosphorylated Aspartate In The Crystal Structure O | 8e-04 | ||
| 3hv2_A | 153 | Crystal Structure Of Signal Receiver Domain Of Hd D | 8e-04 | ||
| 1hey_A | 128 | Investigating The Structural Determinants Of The P2 | 9e-04 | ||
| 1ab6_A | 125 | Structure Of Chey Mutant F14n, V86t Length = 125 | 9e-04 |
| >pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64 | Back alignment and structure |
|
| >pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain Protein From Clostridium Thermocellum Length = 143 | Back alignment and structure |
| >pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of Sinorhizobium Meliloti Dctd Length = 155 | Back alignment and structure |
| >pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region Of Dctd From Sinorhizobium Meliloti Length = 155 | Back alignment and structure |
| >pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal Transduction Histidine Kinase From Syntrophus Aciditrophicus Length = 154 | Back alignment and structure |
| >pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 700-949) Containing Linker Region And Phosphoreceiver Domain Length = 254 | Back alignment and structure |
| >pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 817-949) Containing Phosphoreceiver Domain Length = 133 | Back alignment and structure |
| >pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra Length = 125 | Back alignment and structure |
| >pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N Length = 126 | Back alignment and structure |
| >pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From Bacillus Subtilis Length = 136 | Back alignment and structure |
| >pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas Aeruginosa Rssb Length = 394 | Back alignment and structure |
| >pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator (Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At 1.86 A Resolution Length = 136 | Back alignment and structure |
| >pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis Length = 250 | Back alignment and structure |
| >pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas Aeruginosa Rssb Length = 394 | Back alignment and structure |
| >pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex Aeolicus Length = 121 | Back alignment and structure |
| >pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain Length = 122 | Back alignment and structure |
| >pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra From Mycobacterium Tuberculosis Length = 233 | Back alignment and structure |
| >pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain Length = 126 | Back alignment and structure |
| >pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The Response Regulator Chey2-Mg2+ From Sinorhizobium Meliloti Length = 129 | Back alignment and structure |
| >pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao Respiratory System Response Regulator Torr Length = 122 | Back alignment and structure |
| >pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In Bacterial Signal Transduction Length = 124 | Back alignment and structure |
| >pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structure Incorporating Active Site Contacts Length = 124 | Back alignment and structure |
| >pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of Beryllofluoride- Activated Ntrc Receiver Domain Length = 124 | Back alignment and structure |
| >pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM THERMOTOGA Maritima Length = 225 | Back alignment and structure |
| >pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The Inactive State Length = 368 | Back alignment and structure |
| >pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of The Transcription Regulator Ntrc1 From Aquifex Aeolicus Length = 150 | Back alignment and structure |
| >pdb|1NXO|A Chain A, Micarec Ph7.0 Length = 120 | Back alignment and structure |
| >pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of Yycf Length = 120 | Back alignment and structure |
| >pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus Subtilis Length = 130 | Back alignment and structure |
| >pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp Length = 459 | Back alignment and structure |
| >pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative Luxo Repressor Protein From Vibrio Parahaemolyticus Length = 137 | Back alignment and structure |
| >pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp Length = 459 | Back alignment and structure |
| >pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of Kdp Potassium Transport System Response Regulator Kdpe Length = 121 | Back alignment and structure |
| >pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator Spo0a Length = 130 | Back alignment and structure |
| >pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In Bacterial Signal Transduction Length = 124 | Back alignment and structure |
| >pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk Length = 124 | Back alignment and structure |
| >pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae Length = 134 | Back alignment and structure |
| >pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response Regulator Chey From The Thermophile Thermotoga Maritima Length = 118 | Back alignment and structure |
| >pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii) Length = 120 | Back alignment and structure |
| >pdb|1NXT|A Chain A, Micarec Ph 4.0 Length = 120 | Back alignment and structure |
| >pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins Trapped In A Crystal Lattice Reveals The Mechanism Of Molecular Recognition And Phosphotransfer In Singal Transduction Length = 119 | Back alignment and structure |
| >pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h Complexed With Bef3- And Mn2+ Length = 128 | Back alignment and structure |
| >pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain Length = 125 | Back alignment and structure |
| >pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli Length = 127 | Back alignment and structure |
| >pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t Length = 125 | Back alignment and structure |
| >pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb Length = 130 | Back alignment and structure |
| >pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant Length = 128 | Back alignment and structure |
| >pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From Pseudomonas Fluorescens Length = 208 | Back alignment and structure |
| >pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed With Bef3- And Mn2+ Length = 128 | Back alignment and structure |
| >pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of Sporulation Response Regulator Spo0f From Bacillus Subtilis Length = 124 | Back alignment and structure |
| >pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey Length = 128 | Back alignment and structure |
| >pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of Chey Length = 127 | Back alignment and structure |
| >pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From Escherichia Coli Length = 128 | Back alignment and structure |
| >pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu (Stabilizing Mutations In Helix 4) Length = 129 | Back alignment and structure |
| >pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia Coli Length = 129 | Back alignment and structure |
| >pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of Chey Length = 130 | Back alignment and structure |
| >pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And Dynamics Of Chemotaxis Y Protein Using Three-And Four-Dimensional Heteronuclear (13c,15n) Nmr Spectroscopy Length = 128 | Back alignment and structure |
| >pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein In Aqueous Solution By Nuclear Magnetic Resonance Methods Length = 129 | Back alignment and structure |
| >pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r Complexed With Bef3- And Mn2+ Length = 128 | Back alignment and structure |
| >pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17 Replaced By Gly (M17g) Length = 130 | Back alignment and structure |
| >pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14 Replaced By Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By Gly Length = 129 | Back alignment and structure |
| >pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of The E. Coli Chemotaxis Response Regulator Chey Length = 129 | Back alignment and structure |
| >pdb|3OO0|A Chain A, Structure Of Apo Chey A113p Length = 129 | Back alignment and structure |
| >pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20 Conformers Length = 124 | Back alignment and structure |
| >pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium Fluoride Length = 128 | Back alignment and structure |
| >pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f Length = 126 | Back alignment and structure |
| >pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At Position T+1 In Chey: Cheya88s-Bef3-Mn Complex Length = 129 | Back alignment and structure |
| >pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus Radiodurans Length = 249 | Back alignment and structure |
| >pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The Sporulation Response Regulator, Spo0a Length = 130 | Back alignment and structure |
| >pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain- Containing Protein From Pseudomonas Fluorescens Pf-5 Length = 153 | Back alignment and structure |
| >pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like Triphosphate And Mg2+ Binding Site Length = 128 | Back alignment and structure |
| >pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t Length = 125 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A Length = 146 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 5e-30
Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 3/137 (2%)
Query: 1 MTVEHVNGDQFPSG-LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKN 59
+ H + + + G + +L +D + L L L+ + T + A + R +
Sbjct: 6 IHHHHHHENLYFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGL 65
Query: 60 K-FDLVISDVHMPDMDGFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
FD+++ D D +E L L L ++++ + + ++ + G D L P
Sbjct: 66 DAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWP 125
Query: 118 VRIEELKNIWQHVVRRK 134
+ L + + +
Sbjct: 126 LEPRALDDALKRAAAQC 142
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Length = 143 | Back alignment and structure |
|---|
| >1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64 | Back alignment and structure |
|---|
| >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Length = 153 | Back alignment and structure |
|---|
| >1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Length = 124 | Back alignment and structure |
|---|
| >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} Length = 137 | Back alignment and structure |
|---|
| >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Length = 154 | Back alignment and structure |
|---|
| >3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} Length = 136 | Back alignment and structure |
|---|
| >1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Length = 124 | Back alignment and structure |
|---|
| >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Length = 142 | Back alignment and structure |
|---|
| >3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Length = 137 | Back alignment and structure |
|---|
| >2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Length = 139 | Back alignment and structure |
|---|
| >3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Length = 151 | Back alignment and structure |
|---|
| >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Length = 155 | Back alignment and structure |
|---|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Length = 387 | Back alignment and structure |
|---|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Length = 368 | Back alignment and structure |
|---|
| >3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Length = 394 | Back alignment and structure |
|---|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 | Back alignment and structure |
|---|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 | Back alignment and structure |
|---|
| >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} Length = 127 | Back alignment and structure |
|---|
| >3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} Length = 140 | Back alignment and structure |
|---|
| >1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Length = 129 | Back alignment and structure |
|---|
| >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} Length = 140 | Back alignment and structure |
|---|
| >3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} Length = 146 | Back alignment and structure |
|---|
| >3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} Length = 184 | Back alignment and structure |
|---|
| >3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} Length = 135 | Back alignment and structure |
|---|
| >1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Length = 459 | Back alignment and structure |
|---|
| >1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Length = 459 | Back alignment and structure |
|---|
| >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Length = 126 | Back alignment and structure |
|---|
| >3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A* Length = 358 | Back alignment and structure |
|---|
| >1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ... Length = 128 | Back alignment and structure |
|---|
| >3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Length = 132 | Back alignment and structure |
|---|
| >1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A Length = 205 | Back alignment and structure |
|---|
| >1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Length = 208 | Back alignment and structure |
|---|
| >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Length = 140 | Back alignment and structure |
|---|
| >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} Length = 143 | Back alignment and structure |
|---|
| >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Length = 140 | Back alignment and structure |
|---|
| >3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} Length = 135 | Back alignment and structure |
|---|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Length = 130 | Back alignment and structure |
|---|
| >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} Length = 132 | Back alignment and structure |
|---|
| >3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A Length = 129 | Back alignment and structure |
|---|
| >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} Length = 147 | Back alignment and structure |
|---|
| >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Length = 154 | Back alignment and structure |
|---|
| >3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Length = 138 | Back alignment and structure |
|---|
| >3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Length = 133 | Back alignment and structure |
|---|
| >3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Length = 141 | Back alignment and structure |
|---|
| >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Length = 157 | Back alignment and structure |
|---|
| >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Length = 140 | Back alignment and structure |
|---|
| >3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} Length = 140 | Back alignment and structure |
|---|
| >2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Length = 143 | Back alignment and structure |
|---|
| >1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Length = 149 | Back alignment and structure |
|---|
| >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} Length = 136 | Back alignment and structure |
|---|
| >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} Length = 132 | Back alignment and structure |
|---|
| >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Length = 119 | Back alignment and structure |
|---|
| >3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Length = 142 | Back alignment and structure |
|---|
| >1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Length = 121 | Back alignment and structure |
|---|
| >3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A Length = 286 | Back alignment and structure |
|---|
| >2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Length = 143 | Back alignment and structure |
|---|
| >1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Length = 149 | Back alignment and structure |
|---|
| >3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} Length = 152 | Back alignment and structure |
|---|
| >3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} Length = 250 | Back alignment and structure |
|---|
| >2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} Length = 136 | Back alignment and structure |
|---|
| >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A Length = 120 | Back alignment and structure |
|---|
| >1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Length = 233 | Back alignment and structure |
|---|
| >1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Length = 124 | Back alignment and structure |
|---|
| >2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1 Length = 138 | Back alignment and structure |
|---|
| >3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Length = 116 | Back alignment and structure |
|---|
| >2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Length = 120 | Back alignment and structure |
|---|
| >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 | Back alignment and structure |
|---|
| >2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Length = 238 | Back alignment and structure |
|---|
| >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Length = 143 | Back alignment and structure |
|---|
| >3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} Length = 136 | Back alignment and structure |
|---|
| >1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Length = 123 | Back alignment and structure |
|---|
| >1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Length = 122 | Back alignment and structure |
|---|
| >1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Length = 196 | Back alignment and structure |
|---|
| >1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Length = 136 | Back alignment and structure |
|---|
| >3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans} Length = 249 | Back alignment and structure |
|---|
| >2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV} Length = 230 | Back alignment and structure |
|---|
| >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Length = 120 | Back alignment and structure |
|---|
| >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Length = 121 | Back alignment and structure |
|---|
| >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C Length = 122 | Back alignment and structure |
|---|
| >1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Length = 136 | Back alignment and structure |
|---|
| >3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Length = 140 | Back alignment and structure |
|---|
| >1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A* Length = 220 | Back alignment and structure |
|---|
| >1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Length = 140 | Back alignment and structure |
|---|
| >2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Length = 127 | Back alignment and structure |
|---|
| >2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Length = 127 | Back alignment and structure |
|---|
| >1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A* Length = 225 | Back alignment and structure |
|---|
| >2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Length = 133 | Back alignment and structure |
|---|
| >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Length = 154 | Back alignment and structure |
|---|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} Length = 144 | Back alignment and structure |
|---|
| >1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Length = 130 | Back alignment and structure |
|---|
| >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Length = 137 | Back alignment and structure |
|---|
| >2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori} Length = 223 | Back alignment and structure |
|---|
| >3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* Length = 145 | Back alignment and structure |
|---|
| >3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} Length = 164 | Back alignment and structure |
|---|
| >3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Length = 206 | Back alignment and structure |
|---|
| >1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1 Length = 349 | Back alignment and structure |
|---|
| >3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa} Length = 400 | Back alignment and structure |
|---|
| >3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} Length = 134 | Back alignment and structure |
|---|
| >3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus} Length = 133 | Back alignment and structure |
|---|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A Length = 150 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Length = 153 | Back alignment and structure |
|---|
| >3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Length = 225 | Back alignment and structure |
|---|
| >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Length = 152 | Back alignment and structure |
|---|
| >1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A Length = 215 | Back alignment and structure |
|---|
| >3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis} Length = 225 | Back alignment and structure |
|---|
| >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 695 | |||
| 3to5_A | 134 | CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p | 99.92 | |
| 1irz_A | 64 | ARR10-B; helix-turn-helix, DNA binding protein; NM | 99.9 | |
| 3f6p_A | 120 | Transcriptional regulatory protein YYCF; unphospho | 99.86 | |
| 3gl9_A | 122 | Response regulator; beta-sheet, surrounded by alph | 99.86 | |
| 3t6k_A | 136 | Response regulator receiver; flavodoxin-like, stru | 99.86 | |
| 2lpm_A | 123 | Two-component response regulator; transcription re | 99.85 | |
| 2r25_B | 133 | Osmosensing histidine protein kinase SLN1; alpha5- | 99.84 | |
| 3h1g_A | 129 | Chemotaxis protein CHEY homolog; sulfate-bound CHE | 99.84 | |
| 3hv2_A | 153 | Response regulator/HD domain protein; PSI-2, NYSGX | 99.84 | |
| 3m6m_D | 143 | Sensory/regulatory protein RPFC; RPFF, REC, enoyl- | 99.84 | |
| 2pl1_A | 121 | Transcriptional regulatory protein PHOP; CHEY-like | 99.83 | |
| 3gt7_A | 154 | Sensor protein; structural genomics, signal receiv | 99.83 | |
| 2a9o_A | 120 | Response regulator; essential protein, YYCF/YYCG h | 99.83 | |
| 1zgz_A | 122 | Torcad operon transcriptional regulatory protein; | 99.83 | |
| 3crn_A | 132 | Response regulator receiver domain protein, CHEY-; | 99.82 | |
| 3jte_A | 143 | Response regulator receiver protein; structural ge | 99.82 | |
| 3rqi_A | 184 | Response regulator protein; structural genomics, s | 99.82 | |
| 1dbw_A | 126 | Transcriptional regulatory protein FIXJ; doubly wo | 99.82 | |
| 1xhf_A | 123 | DYE resistance, aerobic respiration control protei | 99.82 | |
| 3h5i_A | 140 | Response regulator/sensory box protein/ggdef domai | 99.82 | |
| 3mm4_A | 206 | Histidine kinase homolog; receiver domain, CKI1, c | 99.82 | |
| 1jbe_A | 128 | Chemotaxis protein CHEY; signaling protein; 1.08A | 99.82 | |
| 1srr_A | 124 | SPO0F, sporulation response regulatory protein; as | 99.82 | |
| 1zh2_A | 121 | KDP operon transcriptional regulatory protein KDPE | 99.82 | |
| 2qzj_A | 136 | Two-component response regulator; 11017X, PSI-II, | 99.82 | |
| 3grc_A | 140 | Sensor protein, kinase; protein structure initiati | 99.81 | |
| 3hdv_A | 136 | Response regulator; PSI-II, structural genomics, P | 99.81 | |
| 1tmy_A | 120 | CHEY protein, TMY; chemotaxis, phosphoryl transfer | 99.81 | |
| 3eod_A | 130 | Protein HNR; response regulator, phosphoprotein, t | 99.81 | |
| 1p6q_A | 129 | CHEY2; chemotaxis, signal transduction, response r | 99.81 | |
| 3lua_A | 140 | Response regulator receiver protein; two-component | 99.81 | |
| 1i3c_A | 149 | Response regulator RCP1; phytochrome, signaling pr | 99.81 | |
| 1mb3_A | 124 | Cell division response regulator DIVK; signal tran | 99.81 | |
| 3r0j_A | 250 | Possible two component system response transcript | 99.81 | |
| 3hdg_A | 137 | Uncharacterized protein; two-component sensor acti | 99.81 | |
| 3heb_A | 152 | Response regulator receiver domain protein (CHEY); | 99.81 | |
| 1k68_A | 140 | Phytochrome response regulator RCPA; phosphorylate | 99.81 | |
| 3ilh_A | 146 | Two component response regulator; NYSGXRC, PSI-II, | 99.81 | |
| 3kht_A | 144 | Response regulator; PSI-II, 11023K, structural gen | 99.81 | |
| 1s8n_A | 205 | Putative antiterminator; RV1626, structural genomi | 99.81 | |
| 1mvo_A | 136 | PHOP response regulator; phosphate regulon, transc | 99.81 | |
| 4e7p_A | 150 | Response regulator; DNA binding, cytosol, transcri | 99.81 | |
| 3kto_A | 136 | Response regulator receiver protein; PSI-II,struct | 99.81 | |
| 3b2n_A | 133 | Uncharacterized protein Q99UF4; structural genomic | 99.8 | |
| 3i42_A | 127 | Response regulator receiver domain protein (CHEY- | 99.8 | |
| 3f6c_A | 134 | Positive transcription regulator EVGA; structural | 99.8 | |
| 3cnb_A | 143 | DNA-binding response regulator, MERR family; signa | 99.8 | |
| 3n0r_A | 286 | Response regulator; sigma factor, receiver, two-co | 99.8 | |
| 3cfy_A | 137 | Putative LUXO repressor protein; structural genomi | 99.8 | |
| 3nhm_A | 133 | Response regulator; protein structure initiative I | 99.8 | |
| 2zay_A | 147 | Response regulator receiver protein; structural ge | 99.8 | |
| 1dz3_A | 130 | Stage 0 sporulation protein A; response regulator, | 99.8 | |
| 3hzh_A | 157 | Chemotaxis response regulator (CHEY-3); phosphatas | 99.8 | |
| 1k66_A | 149 | Phytochrome response regulator RCPB; CHEY homologu | 99.8 | |
| 3cg0_A | 140 | Response regulator receiver modulated diguanylate | 99.8 | |
| 2jba_A | 127 | Phosphate regulon transcriptional regulatory PROT; | 99.79 | |
| 4dad_A | 146 | Putative pilus assembly-related protein; response | 99.79 | |
| 3c3m_A | 138 | Response regulator receiver protein; structural ge | 99.79 | |
| 3n53_A | 140 | Response regulator receiver modulated diguanylate; | 99.79 | |
| 3snk_A | 135 | Response regulator CHEY-like protein; P-loop conta | 99.79 | |
| 3luf_A | 259 | Two-component system response regulator/ggdef doma | 99.79 | |
| 3eul_A | 152 | Possible nitrate/nitrite response transcriptional | 99.79 | |
| 3lte_A | 132 | Response regulator; structural genomics, PSI, prot | 99.79 | |
| 3q9s_A | 249 | DNA-binding response regulator; DNA binding protei | 99.79 | |
| 3cg4_A | 142 | Response regulator receiver domain protein (CHEY-; | 99.79 | |
| 1dcf_A | 136 | ETR1 protein; beta-alpha five sandwich, transferas | 99.78 | |
| 2rjn_A | 154 | Response regulator receiver:metal-dependent phosph | 99.78 | |
| 1kgs_A | 225 | DRRD, DNA binding response regulator D; DNA-bindin | 99.78 | |
| 1a04_A | 215 | Nitrate/nitrite response regulator protein NARL; s | 99.78 | |
| 2ayx_A | 254 | Sensor kinase protein RCSC; two independent struct | 99.78 | |
| 3kcn_A | 151 | Adenylate cyclase homolog; SGX, PSI 2, structural | 99.78 | |
| 1yio_A | 208 | Response regulatory protein; transcription regulat | 99.78 | |
| 2qr3_A | 140 | Two-component system response regulator; structura | 99.78 | |
| 2qxy_A | 142 | Response regulator; regulation of transcription, N | 99.78 | |
| 3a10_A | 116 | Response regulator; phosphoacceptor, signaling pro | 99.77 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 99.77 | |
| 1qkk_A | 155 | DCTD, C4-dicarboxylate transport transcriptional r | 99.77 | |
| 2qvg_A | 143 | Two component response regulator; NYSGXRC, PSI-2, | 99.76 | |
| 2gkg_A | 127 | Response regulator homolog; social motility, recei | 99.76 | |
| 3cu5_A | 141 | Two component transcriptional regulator, ARAC FAM; | 99.76 | |
| 3cz5_A | 153 | Two-component response regulator, LUXR family; str | 99.76 | |
| 1ys7_A | 233 | Transcriptional regulatory protein PRRA; response | 99.76 | |
| 2jk1_A | 139 | HUPR, hydrogenase transcriptional regulatory prote | 99.76 | |
| 2oqr_A | 230 | Sensory transduction protein REGX3; response regul | 99.76 | |
| 3eq2_A | 394 | Probable two-component response regulator; adaptor | 99.75 | |
| 2gwr_A | 238 | DNA-binding response regulator MTRA; two-component | 99.75 | |
| 1w25_A | 459 | Stalked-cell differentiation controlling protein; | 99.74 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 99.74 | |
| 2qsj_A | 154 | DNA-binding response regulator, LUXR family; struc | 99.74 | |
| 2pln_A | 137 | HP1043, response regulator; signaling protein; 1.8 | 99.74 | |
| 3c97_A | 140 | Signal transduction histidine kinase; structural g | 99.74 | |
| 2j48_A | 119 | Two-component sensor kinase; pseudo-receiver, circ | 99.74 | |
| 3kyj_B | 145 | CHEY6 protein, putative histidine protein kinase; | 99.73 | |
| 3eqz_A | 135 | Response regulator; structural genomics, unknown f | 99.73 | |
| 2qv0_A | 143 | Protein MRKE; structural genomics, transcription, | 99.73 | |
| 3t8y_A | 164 | CHEB, chemotaxis response regulator protein-glutam | 99.73 | |
| 2rdm_A | 132 | Response regulator receiver protein; structural ge | 99.73 | |
| 3klo_A | 225 | Transcriptional regulator VPST; REC domain, HTH do | 99.72 | |
| 1p2f_A | 220 | Response regulator; DRRB, OMPR/PHOB, transcription | 99.72 | |
| 3bre_A | 358 | Probable two-component response regulator; protein | 99.71 | |
| 3c3w_A | 225 | Two component transcriptional regulatory protein; | 99.71 | |
| 2b4a_A | 138 | BH3024; flavodoxin-like fold, structural genomics, | 99.71 | |
| 1qo0_D | 196 | AMIR; binding protein, gene regulator, receptor; 2 | 99.7 | |
| 2hqr_A | 223 | Putative transcriptional regulator; phosporylation | 99.69 | |
| 1dc7_A | 124 | NTRC, nitrogen regulation protein; receiver domain | 99.68 | |
| 3sy8_A | 400 | ROCR; TIM barrel phosphodiesterase-A, transcriptio | 99.68 | |
| 1a2o_A | 349 | CHEB methylesterase; bacterial chemotaxis, adaptat | 99.61 | |
| 3luf_A | 259 | Two-component system response regulator/ggdef doma | 99.6 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.54 | |
| 1w25_A | 459 | Stalked-cell differentiation controlling protein; | 99.0 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 98.94 | |
| 2ayx_A | 254 | Sensor kinase protein RCSC; two independent struct | 97.21 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 96.83 | |
| 3q7r_A | 121 | Transcriptional regulatory protein; CHXR, receiver | 96.32 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 95.85 | |
| 2yxb_A | 161 | Coenzyme B12-dependent mutase; alpha/beta, structu | 95.02 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 92.04 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 90.98 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 90.18 | |
| 1ccw_A | 137 | Protein (glutamate mutase); coenzyme B12, radical | 88.83 | |
| 2i2x_B | 258 | MTAC, methyltransferase 1; TIM barrel and helix bu | 86.43 | |
| 3fkq_A | 373 | NTRC-like two-domain protein; RER070207001320, str | 85.61 | |
| 2yum_A | 75 | ZZZ3 protein, zinc finger ZZ-type-containing prote | 84.87 | |
| 1y80_A | 210 | Predicted cobalamin binding protein; corrinoid, fa | 84.15 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 83.67 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 82.69 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 82.57 | |
| 3ezx_A | 215 | MMCP 1, monomethylamine corrinoid protein 1; N ter | 82.22 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 81.03 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 80.31 |
| >3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=201.59 Aligned_cols=120 Identities=28% Similarity=0.555 Sum_probs=111.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MD 87 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gye-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~d 87 (695)
...+|||||||++..|..++.+|+..||. |.++.++.+|++.+++. .||+||+|++||+|||++++++||.. ++
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~--~~DlillD~~MP~mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG--DFDFVVTDWNMPGMQGIDLLKNIRADEELKH 87 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCC
Confidence 45789999999999999999999999996 66899999999999876 79999999999999999999999743 57
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+|||++|++.+.+.+.+++++||++||.||++.++|..+++++++|
T Consensus 88 ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 88 LPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988764
|
| >1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 | Back alignment and structure |
|---|
| >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A | Back alignment and structure |
|---|
| >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C | Back alignment and structure |
|---|
| >3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0 | Back alignment and structure |
|---|
| >2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B | Back alignment and structure |
|---|
| >3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A | Back alignment and structure |
|---|
| >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} | Back alignment and structure |
|---|
| >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A | Back alignment and structure |
|---|
| >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} | Back alignment and structure |
|---|
| >2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* | Back alignment and structure |
|---|
| >1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 | Back alignment and structure |
|---|
| >3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} | Back alignment and structure |
|---|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
| >3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* | Back alignment and structure |
|---|
| >1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A | Back alignment and structure |
|---|
| >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} | Back alignment and structure |
|---|
| >3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A | Back alignment and structure |
|---|
| >1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ... | Back alignment and structure |
|---|
| >1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E | Back alignment and structure |
|---|
| >1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A | Back alignment and structure |
|---|
| >2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} | Back alignment and structure |
|---|
| >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} | Back alignment and structure |
|---|
| >3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0 | Back alignment and structure |
|---|
| >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y | Back alignment and structure |
|---|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} | Back alignment and structure |
|---|
| >1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A | Back alignment and structure |
|---|
| >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} | Back alignment and structure |
|---|
| >1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A | Back alignment and structure |
|---|
| >1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A | Back alignment and structure |
|---|
| >3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0 | Back alignment and structure |
|---|
| >3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0 | Back alignment and structure |
|---|
| >1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 | Back alignment and structure |
|---|
| >3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 | Back alignment and structure |
|---|
| >1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A | Back alignment and structure |
|---|
| >1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 | Back alignment and structure |
|---|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A | Back alignment and structure |
|---|
| >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 | Back alignment and structure |
|---|
| >3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus} | Back alignment and structure |
|---|
| >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0 | Back alignment and structure |
|---|
| >3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} | Back alignment and structure |
|---|
| >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
| >3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A | Back alignment and structure |
|---|
| >3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
| >3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} | Back alignment and structure |
|---|
| >1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* | Back alignment and structure |
|---|
| >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} | Back alignment and structure |
|---|
| >1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 | Back alignment and structure |
|---|
| >3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
| >2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A | Back alignment and structure |
|---|
| >4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A | Back alignment and structure |
|---|
| >3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} | Back alignment and structure |
|---|
| >3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0 | Back alignment and structure |
|---|
| >3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} | Back alignment and structure |
|---|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* | Back alignment and structure |
|---|
| >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} | Back alignment and structure |
|---|
| >3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} | Back alignment and structure |
|---|
| >1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 | Back alignment and structure |
|---|
| >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} | Back alignment and structure |
|---|
| >1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A* | Back alignment and structure |
|---|
| >1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A | Back alignment and structure |
|---|
| >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A | Back alignment and structure |
|---|
| >3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} | Back alignment and structure |
|---|
| >1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A | Back alignment and structure |
|---|
| >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* | Back alignment and structure |
|---|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
| >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A | Back alignment and structure |
|---|
| >2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A | Back alignment and structure |
|---|
| >3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} | Back alignment and structure |
|---|
| >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} | Back alignment and structure |
|---|
| >1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A | Back alignment and structure |
|---|
| >2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B | Back alignment and structure |
|---|
| >2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV} | Back alignment and structure |
|---|
| >3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A | Back alignment and structure |
|---|
| >2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A | Back alignment and structure |
|---|
| >1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* | Back alignment and structure |
|---|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
| >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
| >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A | Back alignment and structure |
|---|
| >3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
| >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} | Back alignment and structure |
|---|
| >3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* | Back alignment and structure |
|---|
| >3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0 | Back alignment and structure |
|---|
| >2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
| >3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} | Back alignment and structure |
|---|
| >3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* | Back alignment and structure |
|---|
| >1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A* | Back alignment and structure |
|---|
| >3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A* | Back alignment and structure |
|---|
| >3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1 | Back alignment and structure |
|---|
| >1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 | Back alignment and structure |
|---|
| >2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori} | Back alignment and structure |
|---|
| >1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* | Back alignment and structure |
|---|
| >3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1 | Back alignment and structure |
|---|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* | Back alignment and structure |
|---|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
| >1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* | Back alignment and structure |
|---|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
| >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A | Back alignment and structure |
|---|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
| >3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A | Back alignment and structure |
|---|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
| >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
| >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* | Back alignment and structure |
|---|
| >2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
| >3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
| >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica} | Back alignment and structure |
|---|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri} | Back alignment and structure |
|---|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 695 | ||||
| d1irza_ | 64 | a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th | 2e-30 | |
| d1dz3a_ | 123 | c.23.1.1 (A:) Sporulation response regulator Spo0A | 2e-28 | |
| d1zesa1 | 121 | c.23.1.1 (A:3-123) PhoB receiver domain {Escherich | 1e-26 | |
| d1dcfa_ | 134 | c.23.1.2 (A:) Receiver domain of the ethylene rece | 2e-26 | |
| d1u0sy_ | 118 | c.23.1.1 (Y:) CheY protein {Thermotoga maritima [T | 8e-26 | |
| d2a9pa1 | 117 | c.23.1.1 (A:2-118) DNA-binding response regulator | 1e-25 | |
| d1a04a2 | 138 | c.23.1.1 (A:5-142) Nitrate/nitrite response regula | 3e-25 | |
| d1jbea_ | 128 | c.23.1.1 (A:) CheY protein {Escherichia coli [TaxI | 3e-25 | |
| d2r25b1 | 128 | c.23.1.1 (B:1087-1214) Response regulator Sin1 {Ba | 1e-24 | |
| d1peya_ | 119 | c.23.1.1 (A:) Sporulation response regulator Spo0F | 2e-24 | |
| d1zgza1 | 120 | c.23.1.1 (A:2-121) TorCAD operon transcriptional r | 3e-24 | |
| d1xhfa1 | 121 | c.23.1.1 (A:2-122) Aerobic respiration control pro | 3e-24 | |
| d1p6qa_ | 129 | c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti | 7e-24 | |
| d2b4aa1 | 118 | c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Ba | 1e-23 | |
| d1a2oa1 | 140 | c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal | 2e-23 | |
| d1k68a_ | 140 | c.23.1.1 (A:) Response regulator for cyanobacteria | 3e-23 | |
| d1mb3a_ | 123 | c.23.1.1 (A:) Cell division response regulator Div | 5e-23 | |
| d1s8na_ | 190 | c.23.1.1 (A:) Probable two-component system transc | 6e-23 | |
| d1i3ca_ | 144 | c.23.1.1 (A:) Response regulator for cyanobacteria | 6e-23 | |
| d1ny5a1 | 137 | c.23.1.1 (A:1-137) Transcriptional activator sigm5 | 9e-23 | |
| d1qkka_ | 140 | c.23.1.1 (A:) Transcriptional regulatory protein D | 2e-22 | |
| d2ayxa1 | 133 | c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C | 2e-22 | |
| d1krwa_ | 123 | c.23.1.1 (A:) NTRC receiver domain {Salmonella typ | 4e-22 | |
| d1yioa2 | 128 | c.23.1.1 (A:3-130) Response regulatory protein Sty | 4e-22 | |
| d1dbwa_ | 123 | c.23.1.1 (A:) Transcriptional regulatory protein F | 1e-21 | |
| d1kgsa2 | 122 | c.23.1.1 (A:2-123) PhoB receiver domain {Thermotog | 3e-21 | |
| d1zh2a1 | 119 | c.23.1.1 (A:2-120) Transcriptional regulatory prot | 3e-21 | |
| d1mvoa_ | 121 | c.23.1.1 (A:) PhoP receiver domain {Bacillus subti | 4e-21 | |
| d1ys7a2 | 121 | c.23.1.1 (A:7-127) Transcriptional regulatory prot | 6e-21 | |
| d1p2fa2 | 120 | c.23.1.1 (A:1-120) Response regulator DrrB {Thermo | 1e-20 | |
| d2pl1a1 | 119 | c.23.1.1 (A:1-119) PhoP receiver domain {Escherich | 7e-20 | |
| d1w25a2 | 153 | c.23.1.1 (A:141-293) Response regulator PleD, rece | 1e-19 | |
| d1k66a_ | 149 | c.23.1.1 (A:) Response regulator for cyanobacteria | 2e-19 | |
| d1w25a1 | 139 | c.23.1.1 (A:2-140) Response regulator PleD, receiv | 2e-18 | |
| d1qo0d_ | 189 | c.23.1.3 (D:) Positive regulator of the amidase op | 1e-15 |
| >d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: GARP response regulators domain: Arr10-B species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 111 bits (279), Expect = 2e-30
Identities = 47/64 (73%), Positives = 59/64 (92%)
Query: 195 TTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYL 254
T QKKPRV+W+ ELH KF+AAV+ LG+++AVPKKILDLMNV+KLTRENVASHLQK+R+ L
Sbjct: 1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60
Query: 255 KRIS 258
K++S
Sbjct: 61 KKVS 64
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Length = 123 | Back information, alignment and structure |
|---|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} Length = 121 | Back information, alignment and structure |
|---|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 134 | Back information, alignment and structure |
|---|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Length = 118 | Back information, alignment and structure |
|---|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 117 | Back information, alignment and structure |
|---|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Length = 138 | Back information, alignment and structure |
|---|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 128 | Back information, alignment and structure |
|---|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} Length = 119 | Back information, alignment and structure |
|---|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 120 | Back information, alignment and structure |
|---|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 121 | Back information, alignment and structure |
|---|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Length = 129 | Back information, alignment and structure |
|---|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} Length = 118 | Back information, alignment and structure |
|---|
| >d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 140 | Back information, alignment and structure |
|---|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Length = 140 | Back information, alignment and structure |
|---|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} Length = 123 | Back information, alignment and structure |
|---|
| >d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 190 | Back information, alignment and structure |
|---|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} Length = 144 | Back information, alignment and structure |
|---|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 137 | Back information, alignment and structure |
|---|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} Length = 140 | Back information, alignment and structure |
|---|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 133 | Back information, alignment and structure |
|---|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} Length = 123 | Back information, alignment and structure |
|---|
| >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Length = 128 | Back information, alignment and structure |
|---|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} Length = 123 | Back information, alignment and structure |
|---|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Length = 122 | Back information, alignment and structure |
|---|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 119 | Back information, alignment and structure |
|---|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} Length = 121 | Back information, alignment and structure |
|---|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 121 | Back information, alignment and structure |
|---|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Length = 120 | Back information, alignment and structure |
|---|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Length = 119 | Back information, alignment and structure |
|---|
| >d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 153 | Back information, alignment and structure |
|---|
| >d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} Length = 149 | Back information, alignment and structure |
|---|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 139 | Back information, alignment and structure |
|---|
| >d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Length = 189 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 695 | |||
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 99.93 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 99.92 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 99.92 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 99.92 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 99.91 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 99.91 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 99.91 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 99.91 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 99.91 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 99.91 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 99.91 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 99.91 | |
| d1s8na_ | 190 | Probable two-component system transcriptional regu | 99.91 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 99.9 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 99.9 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 99.9 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 99.9 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 99.9 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 99.9 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 99.9 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 99.89 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 99.89 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 99.89 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 99.89 | |
| d1yioa2 | 128 | Response regulatory protein StyR, N-terminal domai | 99.89 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 99.89 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 99.88 | |
| d1k66a_ | 149 | Response regulator for cyanobacterial phytochrome | 99.88 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 99.88 | |
| d1w25a2 | 153 | Response regulator PleD, receiver domain {Caulobac | 99.87 | |
| d1irza_ | 64 | Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId | 99.85 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 99.84 | |
| d1qo0d_ | 189 | Positive regulator of the amidase operon AmiR {Pse | 99.82 | |
| d1a2oa1 | 140 | Methylesterase CheB, N-terminal domain {Salmonella | 99.82 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 91.8 | |
| d1xrsb1 | 160 | D-lysine 5,6-aminomutase beta subunit KamE, C-term | 85.15 | |
| d2cu7a1 | 65 | MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 | 82.67 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 81.85 |
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=4.4e-25 Score=198.40 Aligned_cols=117 Identities=29% Similarity=0.424 Sum_probs=112.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
|||||||||+..+..++.+|+..||+|.++.++++|++.+++. .||+||+|+.||++||++++++++. .+.+|||++
T Consensus 1 mrILvVDDd~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~--~~dliilD~~mP~~~G~e~~~~i~~~~~~~pvi~l 78 (119)
T d2pl1a1 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc--ccceeehhccCCCchhHHHHHHHHhcCcccceEee
Confidence 7999999999999999999999999999999999999999875 7999999999999999999999975 468999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
|++.+.+...+|++.||+|||.||++.++|..++++++||
T Consensus 79 t~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~lrR 118 (119)
T d2pl1a1 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (119)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999976
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
| >d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} | Back information, alignment and structure |
|---|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
| >d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
| >d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
| >d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
| >d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]} | Back information, alignment and structure |
|---|
| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|