Citrus Sinensis ID: 005498

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690---
MKSSTTSANCVLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSMLETKKSTPETNATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLPTSVDNSSTTTVSGGTNSSENGTNTGRRLLEDNNSKGSQEGNDKEDVPVATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAG
ccccccHHHHHHHHHEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEcccccccEEEEcccccEEEEEEccccccccccccccccccccccEEEEccccccEEEEEEccccEEEEEEccccEEccEEcccccccccccccccccccccccccccccccEEEccHHHHHcccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccEEEccccccccccccccEEEEEccccccccccccccccccccccccccEEEccccEEEEEEEEccccccccEEEEccccccccEEEEEEEccccccccccccccccccccccccccccEEEEEcccccEEEEEcccccccccccccccccccEEEEccccccccEEEEEcccEEEEEcccccEEEcEEcccccccccEEEEEEccccccEEEEEccccEEEEEEccccEEEEEEEEcccccccEEEEEcccccccEEEEEccccEEEEEcccccccccEEEEccccEEEEEEEEEEcccccccccEEEEEEccccEEEEEccccccEEEEEcccccEEcEEEEEEccccccEEEEEEEcccEEEEEccccccccccc
cccccccHHHHHHHHHHHEccccccccccccccHccccccHHcccccccHHHHHcccccccEEEEEEEEEccccccccEEEEEcccccEEEEEEcccEEEEEEEcccccccccccccccccccccccEEEccccccEEEEEEEcccEEEEEEccccEcccEEEcccccccccccccccccccccccccccccHHHHHccHEEcccccccccccccccccEEEccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccEEEEccccccccccccccHHccccHHccHHccccccccHHHHccccHHHcccccccccccEEEcccEccccEEEEEccccccEEEEEEEEccccHHcccccHHHHccccccccEEcccEEEEEcccccEEEEEEEEcccccccccEEEEcccEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccccccEEEEEccccccEEEEEEccccEEEEEEccccEEEEcccccccccccEEEEccccccEEEEEEccccEEEEEEcccccEcccccccccccccccEEEEEEcccccccccEEEEEEccccEEEEEEcccccccEEEcccccccEEEEcccccccccEEEEEEcccEEEEEEccccccccccc
MKSSTTSANCVLLICLLLFnsarggdnseqnkfrqreatddqlglpqidedalvntqcpknlelrwqtevsssiyatpliadinsdgkldivVPSFLHYLEVlegsdgdkmpgwpafhqssvhsspllydidkDGVREIALATYNGEVLFFRVSgymmtdkleiprrkvrkdwyvglhsdpvdrshpdvhddliVQESEAARMKSMLEtkkstpetnatvttstesnpapatvsnpdvkkVNESLvnvsnpseerkvneshtemniklptsvdnsstttvsggtnssengtntgrrllednnskgsqegndkedvpvataendqaldenadssfeLFRDTDEladeynydyddyvddamwgdeewtEEQHEKIEDYvnvdshilstpviadidndgvSEMIIAVSYffdheyydnpehlkelggidigkYVAGAIVVFNldtkqvkwttdldlstdnasfrayiyssptvvdldgdgnldilVGTSFGLFYVLdhhgkirekfPLEMAEIQGAVVAadinddgkieLVTTDTHGNVAAWTAEGKGIWEQHLKSLVtqgpsigdvdgdghsdVVVPTLSGNIyvlsgkdgskvrpypyrthgrvmNQVLLVDLTkrgekskgltIVTTSFDGYLylidgptscadvvdigETSYSMVladnvdggddLDLIVTTMngnvfcfstpaphhplkag
MKSSTTSANCVLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGymmtdkleiprrkvrkdWYVGLhsdpvdrshpdvhDDLIVQESEAARMKSMletkkstpetnatvttstesnpapatvsnpdvkkvneslvnvsnpseerkvneshtemniklptsvdnsstttvsggtnssengtntgrRLLEdnnskgsqegndkedvpVATAEndqaldenadssfelfRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVkwttdldlstdnaSFRAYIYSSptvvdldgdGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNiyvlsgkdgskvrpypyrthgrvmnQVLLVDltkrgekskgltivttSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFstpaphhplkag
MKSSTTSANCVLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSMLETKKSTPETNATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLPtsvdnsstttvsggtnssengtntgRRLLEDNNSKGSQEGNDKEDVPVATAENDQALDENADSSFELFRDTDELAdeynydyddyvddAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIgdvdgdghsdvvvPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAG
*******ANCVLLICLLLFNS*****************************DALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHS************************************************************************************************************************************************************LFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFS***********
*****TSANCVLLICLLLFNS***************EATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSMLETKKSTPETNATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLPTSVDNSSTTTVSGGTNSSENGTNTGRRLLEDNNSKGSQEGNDKEDVPVATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP*******
********NCVLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSM**************************VSNPDVKKVNESLVN**************TEMNIKLPTS*******************TNTGRRLLEDN***************VATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAG
******SANCVLLICLLLFNSA*************REATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSML**********************************************************************************************************DVPVATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHP****
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SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKSSTTSANCVLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSMLETKKSTPETNATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLPTSVDNSSTTTVSGGTNSSENGTNTGRRLLEDNNSKGSQEGNDKEDVPVATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query693
224139008701 predicted protein [Populus trichocarpa] 0.958 0.947 0.752 0.0
297740250 847 unnamed protein product [Vitis vinifera] 0.963 0.788 0.779 0.0
225440608 857 PREDICTED: uncharacterized protein LOC10 0.966 0.781 0.770 0.0
255573883 868 conserved hypothetical protein [Ricinus 0.933 0.745 0.764 0.0
356506784 886 PREDICTED: uncharacterized protein LOC10 0.959 0.750 0.739 0.0
357468639 890 Defective in exine formation [Medicago t 0.988 0.769 0.701 0.0
356496156 858 PREDICTED: uncharacterized protein LOC10 0.924 0.747 0.741 0.0
297833660 897 hypothetical protein ARALYDRAFT_897057 [ 0.950 0.734 0.700 0.0
5923674 907 unknown protein [Arabidopsis thaliana] 0.952 0.727 0.709 0.0
186509913 817 defective in exine formation protein (DE 0.952 0.807 0.709 0.0
>gi|224139008|ref|XP_002322957.1| predicted protein [Populus trichocarpa] gi|222867587|gb|EEF04718.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1068 bits (2762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/712 (75%), Positives = 605/712 (84%), Gaps = 48/712 (6%)

Query: 11  VLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPKNLELRWQTEV 70
           V LIC LLF ++  GD S++NKFR REATDD LG P IDE+AL+NTQCPKNLELRWQTEV
Sbjct: 8   VFLICFLLFTTSIHGDESKKNKFRDREATDDALGYPDIDENALLNTQCPKNLELRWQTEV 67

Query: 71  SSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYD 130
           SSS+YATPLIADINSDGKLD+VVPSF+HYLE LEGSDGDK+PGWPAFHQS+VH+SPLLYD
Sbjct: 68  SSSVYATPLIADINSDGKLDVVVPSFVHYLEALEGSDGDKIPGWPAFHQSTVHASPLLYD 127

Query: 131 IDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVH 190
           IDKDGVREIALATYNGEVLFFRVSGYMMTDKLE+PRR+V+K+WYVGL  DPVDRSHPDVH
Sbjct: 128 IDKDGVREIALATYNGEVLFFRVSGYMMTDKLEVPRRRVKKNWYVGLDPDPVDRSHPDVH 187

Query: 191 DDLIVQESEAARMKSML--ETKKSTPETNATVTTSTE-SNPAPATVSNPDVKKVNESLVN 247
           DD +V E+   + +S     T ++TPETN++++TSTE S+PA A++              
Sbjct: 188 DDQLVLEATENKSQSHTTGNTHQNTPETNSSISTSTENSHPANASIETG----------- 236

Query: 248 VSNPSEERKVNESHTEMNIKLPTSVDNSS---------------------TTTVSGGTNS 286
                  +K++E+ T+  IKL + VDNSS                     T TV   TN+
Sbjct: 237 -------KKMSENQTKTMIKLSSQVDNSSVGAGSNGTDNAQNGTNKTQNGTITVEKETNN 289

Query: 287 SENGTNTGRRLLEDNNSKGSQEG------NDKEDVPVATAENDQALDENADSSFELFRDT 340
           +ENGTNTGRRLLED+NSKGS EG      ND E+V  AT END+ L+ +ADSSFELFR++
Sbjct: 290 AENGTNTGRRLLEDDNSKGSHEGGSESKENDHENVHAATVENDEGLEADADSSFELFRES 349

Query: 341 DELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEM 400
           DELADEY+YDYDDYVD++MWGDEEW E +HE++EDYVN+DSHIL TPVIADIDNDGV+EM
Sbjct: 350 DELADEYSYDYDDYVDESMWGDEEWKERKHERLEDYVNIDSHILCTPVIADIDNDGVTEM 409

Query: 401 IIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASF 460
           I+AVSYFFDHEYYDNPEHLKELG ID+GKYVA ++VVFNLDTKQVKWT +LDLST  A F
Sbjct: 410 IVAVSYFFDHEYYDNPEHLKELGDIDVGKYVASSVVVFNLDTKQVKWTRELDLSTSTAKF 469

Query: 461 RAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADIN 520
           RAYIYSSP+VVDLDGDGNLDILVGTSFGLFYVLDHHG IRE FPLEMAEIQGAVVAADIN
Sbjct: 470 RAYIYSSPSVVDLDGDGNLDILVGTSFGLFYVLDHHGNIRENFPLEMAEIQGAVVAADIN 529

Query: 521 DDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGN 580
           DDGK ELVTTD HGNVAAWT++GK IWE+HLKSLV+QGP+IGDVDGDGH+DVVVPTLSGN
Sbjct: 530 DDGKTELVTTDVHGNVAAWTSQGKEIWEKHLKSLVSQGPTIGDVDGDGHTDVVVPTLSGN 589

Query: 581 IYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPT 640
           IYVLSGKDGS VRPYPYRTHGRVMNQVLL+DL+KRGEK+KGLT+VTTSFDGYLYLIDGPT
Sbjct: 590 IYVLSGKDGSIVRPYPYRTHGRVMNQVLLLDLSKRGEKNKGLTLVTTSFDGYLYLIDGPT 649

Query: 641 SCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKA 692
           SCADVVDIGETSYSMVLADNVDGGDDLDLIV+TMNGNVFCFSTP PHHPLKA
Sbjct: 650 SCADVVDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFSTPVPHHPLKA 701

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297740250|emb|CBI30432.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440608|ref|XP_002273795.1| PREDICTED: uncharacterized protein LOC100251006 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573883|ref|XP_002527860.1| conserved hypothetical protein [Ricinus communis] gi|223532711|gb|EEF34491.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356506784|ref|XP_003522156.1| PREDICTED: uncharacterized protein LOC100805038 [Glycine max] Back     alignment and taxonomy information
>gi|357468639|ref|XP_003604604.1| Defective in exine formation [Medicago truncatula] gi|355505659|gb|AES86801.1| Defective in exine formation [Medicago truncatula] Back     alignment and taxonomy information
>gi|356496156|ref|XP_003516936.1| PREDICTED: uncharacterized protein LOC100500591 [Glycine max] Back     alignment and taxonomy information
>gi|297833660|ref|XP_002884712.1| hypothetical protein ARALYDRAFT_897057 [Arabidopsis lyrata subsp. lyrata] gi|297330552|gb|EFH60971.1| hypothetical protein ARALYDRAFT_897057 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|5923674|gb|AAD56325.1|AC009326_12 unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186509913|ref|NP_001118602.1| defective in exine formation protein (DEX1) [Arabidopsis thaliana] gi|332641199|gb|AEE74720.1| defective in exine formation protein (DEX1) [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query693
TAIR|locus:2095274 896 DEX1 "DEFECTIVE IN EXINE FORMA 0.691 0.534 0.660 2e-252
TAIR|locus:2095274 DEX1 "DEFECTIVE IN EXINE FORMATION 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1608 (571.1 bits), Expect = 2.0e-252, Sum P(2) = 2.0e-252
 Identities = 323/489 (66%), Positives = 360/489 (73%)

Query:   211 KSTPET-NATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLP 269
             K TPE  N+++     +  A AT +    + +N ++   +N  ++ K++    E  IKL 
Sbjct:   246 KPTPELHNSSMDAGANNLAANATTAGSR-ENLNRNVT--TNEVDQSKISGDKNETVIKLN 302

Query:   270 XXXXXXXXXXXXXXXXXXXXXXXXX-RRLLEDNNSKGSQEGN-DKED----VPVATAEND 323
                                       RRLLE++ SK S + + D +D    V +AT END
Sbjct:   303 TSTGNSSETLGTSGNSSTAETVTKSGRRLLEEDGSKESVDSHSDSKDNSEGVRMATVEND 362

Query:   324 QALDENADSSFELFRDTDELAXXXXXXXXXXXXXAMWGDEEWTEEQHEKIEDYVNVDSHI 383
               L+ +ADSSFEL R+ DELA              MWGDEEW E QHE  EDYVN+D+HI
Sbjct:   363 GGLEADADSSFELLRENDELADEYSYDYDDYVDEKMWGDEEWVEGQHENSEDYVNIDAHI 422

Query:   384 LSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTK 443
             L TPVIADID DGV EMI+AVSYFFD EYYDNPEHLKELGGIDI  Y+A +IVVFNLDTK
Sbjct:   423 LCTPVIADIDKDGVQEMIVAVSYFFDPEYYDNPEHLKELGGIDIKNYIASSIVVFNLDTK 482

Query:   444 QVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKF 503
             QVKW  +LDLSTD A+FRAYIYSSPTVVDLDGDG LDILVGTSFGLFY +DH G IREKF
Sbjct:   483 QVKWIKELDLSTDKANFRAYIYSSPTVVDLDGDGYLDILVGTSFGLFYAMDHRGNIREKF 542

Query:   504 PLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIXX 563
             PLEMAEIQGAVVAADINDDGKIELVTTD+HGN+AAWT +G  IWE HLKSLV QGPSI  
Sbjct:   543 PLEMAEIQGAVVAADINDDGKIELVTTDSHGNIAAWTTQGVEIWEAHLKSLVPQGPSIGD 602

Query:   564 XXXXXXXXXXXPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLT 623
                        PT SGNIYVLSGKDGS VRPYPYRTHGRVMNQ+LLVDL KRGEK KGLT
Sbjct:   603 VDGDGHTEVVVPTSSGNIYVLSGKDGSIVRPYPYRTHGRVMNQLLLVDLNKRGEKKKGLT 662

Query:   624 IVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683
             IVTTSFDGYLYLIDGPTSC DVVDIGETSYSMVLADNVDGGDDLDLIV+TMNGNVFCFST
Sbjct:   663 IVTTSFDGYLYLIDGPTSCTDVVDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFST 722

Query:   684 PAPHHPLKA 692
             P+PHHPLKA
Sbjct:   723 PSPHHPLKA 731
GO:0005576 "extracellular region" evidence=ISM
GO:0005509 "calcium ion binding" evidence=ISS
GO:0010208 "pollen wall assembly" evidence=IMP
GO:0016020 "membrane" evidence=ISS
GO:0005783 "endoplasmic reticulum" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query693
pfam13360234 pfam13360, PQQ_2, PQQ-like domain 8e-05
pfam1351761 pfam13517, VCBS, Family description 2e-04
pfam1351761 pfam13517, VCBS, Family description 3e-04
pfam0183930 pfam01839, FG-GAP, FG-GAP repeat 6e-04
pfam0183930 pfam01839, FG-GAP, FG-GAP repeat 0.003
>gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain Back     alignment and domain information 
 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 60/257 (23%), Positives = 90/257 (35%), Gaps = 42/257 (16%)

Query: 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYV 492
           G +   +  T +V W  DL   T      A             DG   + V T  G    
Sbjct: 3   GVVAALDAATGKVLWRVDLG-GTALGGGVAV------------DGGR-LYVATGKGELVA 48

Query: 493 LD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE-GKGIWEQ- 549
           LD   GK+  +  L      G ++ A     G + +VT D  G++ A  AE GK +W   
Sbjct: 49  LDAATGKLLWRKDLS-----GEILGAPTVAGGVVVVVTAD--GSLYALDAETGKLLWSYQ 101

Query: 550 -HLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVL 608
             L  L  +G S   + GD    V+V   SG +  L  K G  +   P            
Sbjct: 102 RSLPPLTLRGSSSPAIVGDT---VIVGFSSGKLVALDPKTGKVLWEAPVAAPRGGSEIER 158

Query: 609 LVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVV---DIGETSYSMVLADNVDGGD 665
           LVD+T       G  +  +S+ G L  +D  T    V+   +I  +     +   +    
Sbjct: 159 LVDITGT-PVVDGGRVYASSYQGRLVALDLAT--GKVLWSREIS-SINGPAVDGGL---- 210

Query: 666 DLDLIVTTMNGNVFCFS 682
              L V   +G +    
Sbjct: 211 ---LFVVDDDGELVALD 224

This domain contains several repeats of the PQQ repeat. Length = 234
>gnl|CDD|222190 pfam13517, VCBS, Family description Back     alignment and domain information
>gnl|CDD|222190 pfam13517, VCBS, Family description Back     alignment and domain information
>gnl|CDD|216733 pfam01839, FG-GAP, FG-GAP repeat Back     alignment and domain information
>gnl|CDD|216733 pfam01839, FG-GAP, FG-GAP repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 693
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 99.5
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 99.33
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 98.93
KOG3637 1030 consensus Vitronectin receptor, alpha subunit [Ext 98.87
KOG3637 1030 consensus Vitronectin receptor, alpha subunit [Ext 98.83
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 98.81
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 98.8
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 98.6
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 98.42
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 98.36
KOG4550 606 consensus Predicted membrane protein [Function unk 98.31
TIGR03075 527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 98.25
PF1351761 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhi 98.22
PF1351761 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhi 98.11
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 98.07
COG1520370 FOG: WD40-like repeat [Function unknown] 97.86
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 97.81
KOG4550 606 consensus Predicted membrane protein [Function unk 97.78
TIGR03074 764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 97.71
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 97.61
TIGR03075527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 97.57
COG1520370 FOG: WD40-like repeat [Function unknown] 97.5
KOG4649 354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 97.29
TIGR03074 764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 96.76
KOG0296399 consensus Angio-associated migratory cell protein 96.42
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 95.95
PF0183934 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This re 95.95
PF0183934 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This re 95.86
KOG0266456 consensus WD40 repeat-containing protein [General 95.57
KOG0296399 consensus Angio-associated migratory cell protein 95.38
KOG2106 626 consensus Uncharacterized conserved protein, conta 95.38
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 94.92
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 94.08
KOG0266456 consensus WD40 repeat-containing protein [General 93.8
PTZ00420 568 coronin; Provisional 93.78
PF14779257 BBS1: Ciliary BBSome complex subunit 1 93.57
KOG0316307 consensus Conserved WD40 repeat-containing protein 93.39
PTZ00421 493 coronin; Provisional 93.25
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 92.45
PLN00181793 protein SPA1-RELATED; Provisional 92.08
KOG0282503 consensus mRNA splicing factor [Function unknown] 91.74
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 91.4
PLN00181793 protein SPA1-RELATED; Provisional 90.6
PF05567335 Neisseria_PilC: Neisseria PilC beta-propeller doma 90.41
COG4993 773 Gcd Glucose dehydrogenase [Carbohydrate transport 90.36
KOG2055514 consensus WD40 repeat protein [General function pr 89.69
KOG0301 745 consensus Phospholipase A2-activating protein (con 89.24
KOG0646 476 consensus WD40 repeat protein [General function pr 89.08
KOG2048 691 consensus WD40 repeat protein [General function pr 88.77
KOG0316307 consensus Conserved WD40 repeat-containing protein 88.57
KOG0282503 consensus mRNA splicing factor [Function unknown] 88.06
KOG2106626 consensus Uncharacterized conserved protein, conta 87.92
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 87.78
KOG0318 603 consensus WD40 repeat stress protein/actin interac 87.17
KOG2048 691 consensus WD40 repeat protein [General function pr 85.62
KOG2055 514 consensus WD40 repeat protein [General function pr 85.62
KOG4378 673 consensus Nuclear protein COP1 [Signal transductio 84.97
KOG1539 910 consensus WD repeat protein [General function pred 84.06
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 80.91
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information 
Probab=99.50  E-value=1.4e-10  Score=128.01  Aligned_cols=210  Identities=19%  Similarity=0.314  Sum_probs=141.4

Q ss_pred             ceEEEEECCCCceEEEeeccCCcCccccccccccCcEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeccccc---
Q 005498          433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMA---  508 (693)
Q Consensus       433 G~l~~fd~~tG~i~W~~~l~l~~~~~~~~~~~~ssp~v~DlDGDG~~DIvvg~~~G~Lyv~~-~~G~~~~~~~~~~g---  508 (693)
                      +.+++||..+|+++|........    .......+|++.+    |  -+++++.+|.+++++ .+|+..|.++....   
T Consensus       170 g~l~ald~~tG~~~W~~~~~~~~----~~~~~~~sP~v~~----~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~  239 (394)
T PRK11138        170 GMLQALNESDGAVKWTVNLDVPS----LTLRGESAPATAF----G--GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA  239 (394)
T ss_pred             CEEEEEEccCCCEeeeecCCCCc----ccccCCCCCEEEC----C--EEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence            57999999999999998764211    1111235676653    2  377788889999888 68999987654321   


Q ss_pred             -------ccccceEEEeecCCCCeEEEEEcCCCcEEEEec-CCCeeeEEeeccccccCcEEEecCCCCCccEEEEccCCc
Q 005498          509 -------EIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGN  580 (693)
Q Consensus       509 -------~~~ss~~v~DlDgDG~~DLvv~~~~G~v~~~~~-~G~~~W~~~~~s~~~~~~~vgDlDGDG~~DIvv~s~~G~  580 (693)
                             .+...+++.    +|  -|+++..+|.+++++. +|+..|+......  ..+.+.+      .-|++.+.+|.
T Consensus       240 ~~~~~~~~~~~sP~v~----~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~~~~~~~------~~vy~~~~~g~  305 (394)
T PRK11138        240 TEIDRLVDVDTTPVVV----GG--VVYALAYNGNLVALDLRSGQIVWKREYGSV--NDFAVDG------GRIYLVDQNDR  305 (394)
T ss_pred             cchhcccccCCCcEEE----CC--EEEEEEcCCeEEEEECCCCCEEEeecCCCc--cCcEEEC------CEEEEEcCCCe
Confidence                   122344443    22  4777778899999987 8999998775432  2233321      24788888999


Q ss_pred             EEEEECCCCceeecceeccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCcee-EEecC-CcceeeEEE
Q 005498          581 IYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIG-ETSYSMVLA  658 (693)
Q Consensus       581 v~~l~~~~G~~~~~~~~~~~g~~~s~v~l~DlDGDG~~dg~lDIvv~s~dG~ly~~dG~~g~~~-~i~~g-~~~~s~v~~  658 (693)
                      +++++..+|+.+|..+........+|++..+           -|++++.+|++++++..+|... ...+. ....+.|++
T Consensus       306 l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g-----------~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~  374 (394)
T PRK11138        306 VYALDTRGGVELWSQSDLLHRLLTAPVLYNG-----------YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV  374 (394)
T ss_pred             EEEEECCCCcEEEcccccCCCcccCCEEECC-----------EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE
Confidence            9999999999998765433333445544321           2888899999999998877543 44443 234555554


Q ss_pred             EeecCCCCccEEEEeeCCcEEEEEC
Q 005498          659 DNVDGGDDLDLIVTTMNGNVFCFST  683 (693)
Q Consensus       659 ~DlDGDG~lDLvv~s~~G~v~~~~~  683 (693)
                      .    +|  -|++++.+|.||+|+.
T Consensus       375 ~----~~--~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        375 A----DD--KLLIQARDGTVYAITR  393 (394)
T ss_pred             E----CC--EEEEEeCCceEEEEeC
Confidence            3    33  3999999999999975

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures] Back     alignment and domain information
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG4550 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A Back     alignment and domain information
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG4550 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins Back     alignment and domain information
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>PF14779 BBS1: Ciliary BBSome complex subunit 1 Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis Back     alignment and domain information
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query693
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 8e-13
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 6e-11
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 2e-10
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 3e-09
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 5e-10
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 5e-09
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 9e-04
3v4v_A 597 Integrin alpha-4; cell adhesion, madcam-1, membran 2e-09
3v4v_A597 Integrin alpha-4; cell adhesion, madcam-1, membran 2e-05
2bwr_A401 Psathyrella velutina lectin; N-acetyl-glucosamine; 3e-07
2bwr_A 401 Psathyrella velutina lectin; N-acetyl-glucosamine; 4e-07
2bwr_A401 Psathyrella velutina lectin; N-acetyl-glucosamine; 5e-07
4a7k_A 900 Aldos-2-ulose dehydratase; lyase, dehydratase/isom 4e-07
4a7k_A 900 Aldos-2-ulose dehydratase; lyase, dehydratase/isom 1e-05
4a7k_A 900 Aldos-2-ulose dehydratase; lyase, dehydratase/isom 3e-04
3ije_A 967 Integrin alpha-V; integrin structure, activation, 3e-06
3vi3_A 632 Integrin alpha-5; beta propeller fold, rossman fol 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
2zux_A 591 YESW protein; beta-propeller, lyase, rhamnose comp 3e-05
2hz6_A 369 Endoplasmic reticulum to nucleus signalling 1 isof 6e-05
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 2e-04
3t3p_A457 Integrin alpha-IIB; integrin, cell adhesion, blood 1e-04
3fcs_A 959 Integrin, alpha 2B; beta propeller, rossmann fold, 3e-04
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 Back     alignment and structure
 Score = 68.9 bits (169), Expect = 8e-13
 Identities = 55/325 (16%), Positives = 105/325 (32%), Gaps = 91/325 (28%)

Query: 361 GDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLK 420
           G E+W            +    I+S   I +       +++   S   D   Y       
Sbjct: 87  GTEKWR----------FDTKKAIVSDFTIFE-------DILYVTSM--DGHLY------- 120

Query: 421 ELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLD 480
               I+                   KW                IY++P V +   DG   
Sbjct: 121 ---AINT--------------DGTEKWRFKTK---------KAIYATPIVSE---DGT-- 149

Query: 481 ILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWT 540
           I VG++    Y ++  G  + +F    A    A +  D        +        V A  
Sbjct: 150 IYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGT------IYFGS--DKVYAIN 201

Query: 541 AEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTH 600
            +G   W  +        P+I +   DG   + V +L G++Y ++  DG++   + ++T 
Sbjct: 202 PDGTEKWNFYAGYWTVTRPAISE---DGT--IYVTSLDGHLYAIN-PDGTEK--WRFKTG 253

Query: 601 GRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYS--MVLA 658
            R+ +  ++ +           TI   S+DG+LY I+   +     + G    +  ++  
Sbjct: 254 KRIESSPVIGN---------TDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDE 304

Query: 659 DNVDGGDDLDLIVTTMNGNVFCFST 683
           +         +   T NG  +    
Sbjct: 305 NGT-------IYFGTRNGKFYALFN 322
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A* Length = 597 Back     alignment and structure
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A* Length = 597 Back     alignment and structure
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A* Length = 401 Back     alignment and structure
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A* Length = 401 Back     alignment and structure
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A* Length = 401 Back     alignment and structure
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A* Length = 900 Back     alignment and structure
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A* Length = 900 Back     alignment and structure
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A* Length = 900 Back     alignment and structure
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A* Length = 967 Back     alignment and structure
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A* Length = 632 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* Length = 591 Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 Back     alignment and structure
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A* Length = 457 Back     alignment and structure
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} Length = 959 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 693
d1tyea_452 b.69.8.1 (A:) Integrin alpha N-terminal domain {Hu 2e-07
d1jv2a4438 b.69.8.1 (A:1-438) Integrin alpha N-terminal domai 0.002
>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]} Length = 452 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform IIb [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 2e-07
 Identities = 40/327 (12%), Positives = 89/327 (27%), Gaps = 55/327 (16%)

Query: 270 TSVDNSSTTTVSGGTNSSENGTNTGRRLLEDNNSKGSQEGNDKEDVPVATAENDQALDEN 329
            S   +    +  G            +    +     + G     V   +   D +  E 
Sbjct: 171 FSSVVTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEY 230

Query: 330 ADSSFELFRDTDELADEYNYDYDDYVDDAMWGDE--------EWTEEQHEKIEDYVNVDS 381
            D  +       E   + + +  +YV  A             +   ++  ++     + S
Sbjct: 231 FDGYWGYSVAVGE--FDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRL-RAEQMAS 287

Query: 382 HILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLD 441
           +   +  + D++ DG  ++++    + +                D      G + +F   
Sbjct: 288 YFGHSVAVTDVNGDGRHDLLVGAPLYME-------------SRADRKLAEVGRVYLFLQP 334

Query: 442 TKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIRE 501
                      L T    +  +  +   + DLD DG  DI V                  
Sbjct: 335 RGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAA---------------- 378

Query: 502 KFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSI 561
             P      +G V+      +G     +          +A G  +               
Sbjct: 379 --PYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSL------------RGA 424

Query: 562 GDVDGDGHSDVVVPTL-SGNIYVLSGK 587
            D+D +G+ D++V    +  + V   +
Sbjct: 425 VDIDDNGYPDLIVGAYGANQVAVYRAQ 451
>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform V [TaxId: 9606]} Length = 438 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query693
d1jv2a4438 Integrin alpha N-terminal domain {Human (Homo sapi 99.48
d1tyea_452 Integrin alpha N-terminal domain {Human (Homo sapi 99.48
d1tyea_452 Integrin alpha N-terminal domain {Human (Homo sapi 99.43
d1jv2a4438 Integrin alpha N-terminal domain {Human (Homo sapi 99.41
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 98.96
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 98.83
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 98.67
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 98.61
d1flga_582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 98.52
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 98.49
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 98.44
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 98.37
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 98.37
d1flga_582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 97.75
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 97.25
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 96.91
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 95.89
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 94.96
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 94.68
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 94.6
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 94.33
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 94.03
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 93.21
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 92.35
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 92.17
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 91.86
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 90.44
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 87.7
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 87.04
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 81.28
>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform V [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform V [TaxId: 9606]

Probab=99.48  E-value=2.6e-13  Score=95.08  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=18.6

Q ss_pred             EEEECCCCCCCEEEEEE-CCCEEEEEC
Q ss_conf             99402899842999960-891999977
Q 005498          658 ADNVDGGDDLDLIVTTM-NGNVFCFST  683 (693)
Q Consensus       658 v~DlDGDG~~DLIv~~~-dG~v~~~~~  683 (693)
                      +.|+|+||.+||+|+.. .+.+++|++
T Consensus       411 ~~D~dgDG~~DlvVGa~~~d~~~l~r~  437 (438)
T d1jv2a4         411 ATDIDKNGYPDLIVGAFGVDRAILYRA  437 (438)
T ss_dssp             CSCCSSSSSCEEEEEETTTTEEEEEEB
T ss_pred             EEEECCCCCCCEEEEECCCCCEEEEEC
T ss_conf             262479898058999169981899968
>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]} Back     information, alignment and structure
>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]} Back     information, alignment and structure
>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform V [TaxId: 9606]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure