Citrus Sinensis ID: 005538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
Protein Sequence
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHcccccccccccEEEEEEcccccHHHHHHHHHHHHcccEEEEccEEEEcccccccccccccEEEEEEEEccccccccccccccEEcccccEEEccccHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccHHHcccEEEEEEEEccccccHcHHHHHcccccEEEEEEccccccc
Coil and Loop (DISEMBL)
MKLELILRLldndelspeqvNDVKDLLEDYVERnqddfeefsdvdelyhllpldkvesledlvtigppglVKATVISTHQQVTSVqeqgedtasqdsnsdvaartppakssgvgstastpavgpatpisinvpaqtlsnasntspvlpgsssvrgvfdntgpisssppvnltsstkeedvgnfpgrrsspsltdvrvmgrgglssqpsssiplssatavpsngnlgavplvsdVAKRNILGAeerlgssgmvqsLVSPLSNRMILSqaakgndgtgsidsnnagetvamagrvftpsmgmqwrtgnsfqnqnepgqfrgrteiapdQREKFLQRLQQVQQQGHsnllgmplggnkqfssqqnpllqqfnsqgssisaqaglglgvqapgmnsvtsaslqqqpnpihqqssqqtlmsggqkdadvshlkveepqqpqnlpeestpesasspglgknliheddlkapyaidsstgvsasltepaqvvrdtdlspgqplqssqpsgglgvigrrsvsdlgaigdslsgatvssggmhdqMYNMQMLESAfyklpqpkdserarsyiprhpavtppsypqvqapivsnpafwerlsldsygtdTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvandefeqgtyvyfdfhianddlqhgwcQRIKTEFTFEynyledeliv
Flexible Loop (DISEMBL)
MKLELILRLldndelspeqvnDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEqgedtasqdsnsdvaartppakssgvgstastpaVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNtgpisssppvnltsstkeedvgnfpgrrsspsltdvRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGaeerlgssgmVQSLVSPLSNRMILSQAAkgndgtgsidsnnagETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPqqpqnlpeestpesaSSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgvIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Low Complexity Region (SEG)
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGlssqpsssiplssATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFlqrlqqvqqqGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVeepqqpqnlpeestpesasspGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Disordered region (IsUnstruct)
*****ILRLL************VKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVIST******************************************************************************************************************************************************PLVSDV******************************************************************************************************************************************************************************************************************************************************************************************************************************************************VQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE***
Disordered Region (DISOPRED)
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVE********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQ**************GTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI*
Disordered Region (DISEMBL)
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVIST******************************************AVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS****************FPGRRSSPSLTDVRVMGR*****************AVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV******************************VSHLKV**********************LGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDT****************LGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Disordered Region (DISPRO)
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPP**VK*********************************************************************************************************************P*LTDV**MGRG*L***********************************************MVQS***PLSNRMILSQ******************************************************EIAPDQREKFLQRLQQVQQQGHSNLLGM************NP***************************************************************************************************************************************************R*VSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED*L**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	691	2.2.26 [Sep-21-2011]
Q8K0V4	751	CCR4-NOT transcription co	yes	no	0.202	0.186	0.542	1e-43
O75175	753	CCR4-NOT transcription co	yes	no	0.202	0.185	0.542	2e-43
O13870	640	General negative regulato	yes	no	0.232	0.251	0.416	1e-33
Q52JK6	603	Probable NOT transcriptio	N/A	no	0.270	0.310	0.268	5e-11
Q9NZN8	540	CCR4-NOT transcription co	no	no	0.163	0.209	0.310	1e-10
Q8C5L3	540	CCR4-NOT transcription co	no	no	0.163	0.209	0.310	1e-10
Q9FPW4	614	Probable NOT transcriptio	no	no	0.099	0.112	0.376	6e-08
P06100	191	General negative regulato	yes	no	0.182	0.659	0.329	7e-07
P87240	306	General negative regulato	no	no	0.144	0.326	0.3	2e-06
Q94547	585	Regulator of gene activit	no	no	0.083	0.099	0.390	4e-05

>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1

 Score =  178 bits (451), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)

Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
           +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665

Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
              T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722

Query: 655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
           +YFD+          W QR K  FTFEY YLED
Sbjct: 723 IYFDY--------EKWGQRKKEGFTFEYRYLED 747

The CCR4-NOT complex functions as general transcription regulation complex.
Mus musculus (taxid: 10090)

>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1

 Score =  177 bits (450), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)

Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
           +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667

Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
              T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724

Query: 655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
           +YFD+          W QR K  FTFEY YLED
Sbjct: 725 IYFDY--------EKWGQRKKEGFTFEYRYLED 749

The CCR4-NOT complex functions as general transcription regulation complex.

Homo sapiens (taxid: 9606)

>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2

 Score =  145 bits (366), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 12/173 (6%)

Query: 516 LGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYP 575
           L  + ++L+ +     G  D+    + L  +   +P   D+ + + YIP+ P   P  YP
Sbjct: 475 LKDLVNALNTSKEQHKGAIDKEKLTEALNISCVYVPDATDAAKPQYYIPKDPYPVPHYYP 534

Query: 576 QVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW 635
           Q   P+  +    E +       DTLF+ FYY+  TYQQY+A +ELKKQSWR+H+KY TW
Sbjct: 535 QQPLPLFDSSEMTELV-----DPDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTW 589

Query: 636 FQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 688
           FQRHEEPK+  DEFE G+Y YFDF       +  W QR K +F F Y YLED+
Sbjct: 590 FQRHEEPKMITDEFESGSYRYFDF-------EGDWVQRKKADFRFTYQYLEDD 635

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 25/212 (11%)

Query: 482 AQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQ 541
            Q  RD  L   Q   +  P G LG++    +SD      +L G  +++ G+     N+ 
Sbjct: 412 GQPFRDQSLKSMQSQVAPDPFGMLGLLSVIRMSDPDLTSLAL-GIDLTTLGL-----NLN 465

Query: 542 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTL 601
             E+ +     P   E A+      P  T P     + P   N A++ +  LD     TL
Sbjct: 466 SAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD-----TL 516

Query: 602 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVYFDF 659
           F+ FY       Q  AA EL  + W YHR++  WF R  + EP V  + +E+G+Y+ FD 
Sbjct: 517 FYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFD- 575

Query: 660 HIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 691
                   + W    K  F      LE   ++
Sbjct: 576 -------PNTWETIHKDNFVLHCEMLEKRPVL 600

Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression.

Nicotiana benthamiana (taxid: 4100)

>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)

Query: 567 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 618
           P  + P  PQ     V +  ++N    ++L+   L  YG D LF+ +Y       Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461

Query: 619 KELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 676
            EL  + WRYH++   W  R    EP +  + +E+GTY +FD           W +++  
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512

Query: 677 EFTFEYNYLEDE 688
           EF  EY+ LE+ 
Sbjct: 513 EFHLEYDKLEER 524

The CCR4-NOT complex functions as general transcription regulation complex.

Homo sapiens (taxid: 9606)

>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)

Query: 567 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 618
           P  + P  PQ     V +  ++N    ++L+   L  YG D LF+ +Y       Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461

Query: 619 KELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 676
            EL  + WRYH++   W  R    EP +  + +E+GTY +FD           W +++  
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512

Query: 677 EFTFEYNYLEDE 688
           EF  EY+ LE+ 
Sbjct: 513 EFHLEYDKLEER 524

The CCR4-NOT complex functions as general transcription regulation complex.

Mus musculus (taxid: 10090)

>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%)

Query: 590 RLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEF 649
           R S   +  + LF+ FY       Q  AA EL ++ W YH++   WF R  EP V    +
Sbjct: 518 RASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLVRAATY 577

Query: 650 EQGTYVYFD 658
           E+GTY Y D
Sbjct: 578 ERGTYEYLD 586

Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC36 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 76/170 (44%), Gaps = 44/170 (25%)

Query: 543 LESAFYKLPQPKDS--------------ERARSYI-PRHPAVTPPSY---PQVQAPIVSN 584
           L S  Y L  P+DS              E +RS + PR    TP S+   P V    V+ 
Sbjct: 34  LSSMLYSLGIPRDSQDHRVLDTFQSPWAETSRSEVEPRF--FTPESFTNIPGVLQSTVTP 91

Query: 585 PAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR 638
           P F       +R++L  +  +TLFF FY    T  Q L   EL+K++WRYH+    W  +
Sbjct: 92  PCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTK 149

Query: 639 --HEEPKVANDEF-EQGTYVYFDFHIANDDLQHGW--CQRIKTEFTFEYN 683
               EP V+ D   E+G+YV+FD           W  CQR   +F   YN
Sbjct: 150 DPMMEPIVSADGLSERGSYVFFD--------PQRWEKCQR---DFLLFYN 188

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. NOT2 is required for the integrity of the complex. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not2 PE=1 SV=2

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 20/120 (16%)

Query: 571 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 630
           P  Y  V  P   +  F        +  +TLF+ FY       Q  AA+EL  ++WR+H+
Sbjct: 196 PACYKNVNPPPAISKIF-------QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248

Query: 631 KYNTWFQ--RHEEPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLED 687
           +   W       +P     +FE+G Y++FD  H         W +RIK +F   Y  LED
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALED 298

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. NOT2 is required for the integrity of the complex. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2 SV=2

 Score = 50.4 bits (119), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 599 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKV----ANDEFEQGTY 654
           D LFF FY       Q +AA EL  + WRYH +   W  R   P +     N   E+GT+
Sbjct: 491 DLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITR--IPGIDQYEKNGTKERGTF 548

Query: 655 VYFD 658
            YFD
Sbjct: 549 YYFD 552

Essential for viability. Acts as a suppressor of position effect variegation (PEV) at the white locus and regulates the expression of several unrelated genes.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
297739742	897	unnamed protein product [Vitis vinifera]	0.995	0.767	0.739	0.0
255568948	889	conserved hypothetical protein [Ricinus	0.984	0.764	0.711	0.0
359481840	888	PREDICTED: uncharacterized protein LOC10	0.986	0.768	0.730	0.0
224125888	886	predicted protein [Populus trichocarpa]	0.979	0.764	0.713	0.0
356559538	892	PREDICTED: uncharacterized protein LOC10	0.991	0.767	0.641	0.0
356560386	884	PREDICTED: uncharacterized protein LOC10	0.972	0.760	0.657	0.0
224144772	895	predicted protein [Populus trichocarpa]	0.984	0.759	0.673	0.0
449446768	900	PREDICTED: uncharacterized protein LOC10	0.995	0.764	0.642	0.0
356571684	882	PREDICTED: uncharacterized protein LOC10	0.969	0.759	0.650	0.0
357508635	901	CCR4-NOT transcription complex subunit [	0.975	0.748	0.622	0.0

>gi|297739742|emb|CBI29924.3| unnamed protein product [Vitis vinifera]

 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/718 (73%), Positives = 602/718 (83%), Gaps = 30/718 (4%)

Query: 1   MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLE 60
           MKLELILRLLDNDELSPEQVNDVKD L+DYVERNQ+DFEEFSDVD+LY+ LPLDKVESLE
Sbjct: 183 MKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDDLYNSLPLDKVESLE 242

Query: 61  DLVTIGPPGLVK-----------------ATVISTHQQVTSVQEQGEDTASQDSNSDVAA 103
           DLVTIG PGLVK                 ATV S  QQ TS+QEQ E+TASQDSNS++  
Sbjct: 243 DLVTIGAPGLVKGAPALSLKNSLTPTQIPATVTSPLQQSTSIQEQSEETASQDSNSEIGP 302

Query: 104 RTPPAKSSGVGSTAS-TPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGP 162
           RTPPAK+S +GS+AS TP    ATPI +NV A  LS AS    +LP S+SVRGV +N G 
Sbjct: 303 RTPPAKNSVIGSSASSTPTGSHATPIPLNVSAHNLS-ASPAPTILPSSTSVRGVLENAGT 361

Query: 163 ISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD---VRVMGRGGLSSQPSSSIPLSSATAV 219
             SSP VN++SS KEE++ +FPGRRSSP+L +   VR +GRG  SSQPS+S+PLSS   +
Sbjct: 362 AISSP-VNVSSSAKEEEIASFPGRRSSPALVETGLVRGIGRGVPSSQPSTSVPLSSGITI 420

Query: 220 PSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSID 279
           PSNG LGAVP  +D++KR+ LGA+ERLG  GMVQ LVSPLSNRMIL Q AK NDGTG  D
Sbjct: 421 PSNGGLGAVPSANDMSKRSTLGADERLGGGGMVQPLVSPLSNRMILPQTAKTNDGTGLAD 480

Query: 280 SNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQ 337
           S++ GE   +AGRVF+PS+  GMQWR G+SFQNQNE GQFRGRTEI  DQ+EKFLQRLQQ
Sbjct: 481 SSSVGEAAVIAGRVFSPSVVPGMQWRPGSSFQNQNESGQFRGRTEITLDQKEKFLQRLQQ 540

Query: 338 VQQQGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV 393
           VQQQ  S +LGMP   GGN KQFS+QQ NPLLQQFNSQ SS+S Q GLG+GVQAPG+N+V
Sbjct: 541 VQQQTQSTILGMPPLSGGNHKQFSAQQQNPLLQQFNSQSSSVSPQVGLGVGVQAPGLNTV 600

Query: 394 TSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLG 453
           TSA++QQQP  IHQQS+QQ L+S G KDADV H+K E+ QQ QN+ ++ST ESA S  LG
Sbjct: 601 TSAAIQQQPGSIHQQSNQQALLSTGPKDADVGHVKAEDQQQQQNVSDDSTMESAPS-SLG 659

Query: 454 KNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSV 513
           KNL++EDDLKAPYA+D+S GVS SLTEP+QV RDTDLSPGQP+QS+QPSG LGVIGRRS+
Sbjct: 660 KNLMNEDDLKAPYAMDTSAGVSGSLTEPSQVPRDTDLSPGQPVQSNQPSGSLGVIGRRSI 719

Query: 514 SDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPS 573
           SDLGAIGD+LSG+ V+SGGMHDQ+YN+QMLE+AFYKLPQPKDSERAR+Y PRHPAVTPPS
Sbjct: 720 SDLGAIGDTLSGSAVNSGGMHDQLYNLQMLEAAFYKLPQPKDSERARNYTPRHPAVTPPS 779

Query: 574 YPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYN 633
           YPQVQAPIV+NPAFWERL LD++GTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYN
Sbjct: 780 YPQVQAPIVNNPAFWERLGLDTFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYN 839

Query: 634 TWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 691
           TWFQRHEEPKVA DEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Sbjct: 840 TWFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568948|ref|XP_002525444.1| conserved hypothetical protein [Ricinus communis] gi|223535257|gb|EEF36934.1| conserved hypothetical protein [Ricinus communis]

 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/718 (71%), Positives = 578/718 (80%), Gaps = 38/718 (5%)

Query: 1   MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLE 60
           MKLELILRLLDNDELSPEQVNDVKD L+DYVERNQ+DF+EFSDVDELY  LPLDKVESLE
Sbjct: 183 MKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVESLE 242

Query: 61  DLVTIGPPGLVK-------------------ATVISTHQQVTSVQEQGEDTASQDSNSDV 101
           +LVT   P LVK                   AT  S  Q  T+VQEQ EDTASQDSN D+
Sbjct: 243 ELVT---PALVKGAPVHSLKTSLASSSSQVLATATSLQQPATNVQEQAEDTASQDSNPDI 299

Query: 102 AARTPPAKSSGVGSTA-STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNT 160
            ARTPPAKSS +GS+A STP V  +TPIS+ +PA TLS AS +S +LPGSSSVRG  +N 
Sbjct: 300 VARTPPAKSSTIGSSAASTPTVNHSTPISVGLPAHTLSGASASS-ILPGSSSVRGALEN- 357

Query: 161 GPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD---VRVMGRGGLSSQPSSSIPLSSAT 217
            P + S P +L +S KEE+   FP RR SP+L D    R +GRG + SQP SSIPLSS  
Sbjct: 358 APANPSSPASLANSVKEEENAGFPVRRPSPALVDPGLARGIGRGAIYSQPPSSIPLSSG- 416

Query: 218 AVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGS 277
           AVPSNG +GAVP  SD+AKRNIL  ++RLGS GMVQ L SPLSNRMIL QA K  DGTG 
Sbjct: 417 AVPSNGAVGAVPTASDIAKRNILSTDDRLGSGGMVQPLASPLSNRMILPQAGKVGDGTGI 476

Query: 278 IDSNNAGETVAMAGRVFTPSM-GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQ 336
           +DSNN GE  A+ GRVF+P + GMQWR G+SFQNQNE GQFR RTEI PDQREKFLQR Q
Sbjct: 477 VDSNNVGEAAAIGGRVFSPLVPGMQWRPGSSFQNQNEQGQFRARTEITPDQREKFLQRFQ 536

Query: 337 QVQQQGHSNLLGMP--LGGN-KQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV 393
           QVQQQG + LLGMP   GGN KQFS+QQN LLQQFNSQ SS+S QA LGLG QAPG+N++
Sbjct: 537 QVQQQGPNTLLGMPPLAGGNHKQFSAQQNSLLQQFNSQSSSVS-QATLGLGSQAPGINAI 595

Query: 394 TSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLG 453
           TSA+LQ  PN + QQS+QQ +MS   KDAD+   KVEE QQPQNLP++S  ESA   GL 
Sbjct: 596 TSAALQP-PNTLLQQSTQQVVMS---KDADIGLSKVEEQQQPQNLPDDSIAESAPMSGLS 651

Query: 454 KNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSV 513
           KNL++ED+LK PY +D+ TG S +L EP Q+ RDTDLSPGQP+QSSQPS GLGVIGRRSV
Sbjct: 652 KNLMNEDELKTPYTMDTPTGASGTLAEPVQLPRDTDLSPGQPIQSSQPSTGLGVIGRRSV 711

Query: 514 SDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPS 573
           SDLGAIGD+L G+ V+SG MHDQ+YN+QMLE+A+++LPQPKDSERARSY PRHP  TPPS
Sbjct: 712 SDLGAIGDNLGGSAVNSGAMHDQLYNLQMLEAAYHRLPQPKDSERARSYTPRHPTATPPS 771

Query: 574 YPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYN 633
           YPQVQAPIV+NPAFWERL++DSYGTDTLFFAFYYQQNT+QQYLAAKELKKQSWRYHRKYN
Sbjct: 772 YPQVQAPIVNNPAFWERLTIDSYGTDTLFFAFYYQQNTHQQYLAAKELKKQSWRYHRKYN 831

Query: 634 TWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 691
           TWFQRHEEPK+A DE+EQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDEL+V
Sbjct: 832 TWFQRHEEPKIATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELLV 889

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481840|ref|XP_003632676.1| PREDICTED: uncharacterized protein LOC100253711 [Vitis vinifera]

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/715 (73%), Positives = 594/715 (83%), Gaps = 33/715 (4%)

Query: 1   MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLE 60
           MKLELILRLLDNDELSPEQVNDVKD L+DYVERNQ+DFEEFSDVD+LY+ LPLDKVESLE
Sbjct: 183 MKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDDLYNSLPLDKVESLE 242

Query: 61  DLVTIGPPGLVKA------------TVISTHQ--QVTSVQEQGEDTASQDSNSDVAARTP 106
           DLVTIG PGLVK             T I  H    +TS+QEQ E+TASQDSNS++  RTP
Sbjct: 243 DLVTIGAPGLVKGAPALSLKNSLTPTQIPVHSFTVITSIQEQSEETASQDSNSEIGPRTP 302

Query: 107 PAKSSGVGSTAS-TPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS 165
           PAK+S +GS+AS TP    ATPI +NV A  LS AS    +LP S+SVRGV +N G   S
Sbjct: 303 PAKNSVIGSSASSTPTGSHATPIPLNVSAHNLS-ASPAPTILPSSTSVRGVLENAGTAIS 361

Query: 166 SPPVNLTSSTKEEDVGNFPGRRSSPSLTD---VRVMGRGGLSSQPSSSIPLSSATAVPSN 222
           SP VN++SS KEE++ +FPGRRSSP+L +   VR +GRG  SSQPS+S+PLSS   +PSN
Sbjct: 362 SP-VNVSSSAKEEEIASFPGRRSSPALVETGLVRGIGRGVPSSQPSTSVPLSSGITIPSN 420

Query: 223 GNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNN 282
           G LGAVP  +D++KR+ LGA+ERLG  GMVQ LVSPLSNRMIL Q AK NDGTG  DS++
Sbjct: 421 GGLGAVPSANDMSKRSTLGADERLGGGGMVQPLVSPLSNRMILPQTAKTNDGTGLADSSS 480

Query: 283 AGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQ 340
            GE   +AGRVF+PS+  GMQWR G+SFQNQNE   FRGRTEI  DQ+EKFLQRLQQVQQ
Sbjct: 481 VGEAAVIAGRVFSPSVVPGMQWRPGSSFQNQNE--SFRGRTEITLDQKEKFLQRLQQVQQ 538

Query: 341 QGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSA 396
           Q  S +LGMP   GGN KQFS+QQ NPLLQQ     SS+S Q GLG+GVQAPG+N+VTSA
Sbjct: 539 QTQSTILGMPPLSGGNHKQFSAQQQNPLLQQV----SSVSPQVGLGVGVQAPGLNTVTSA 594

Query: 397 SLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNL 456
           ++QQQP  IHQQS+QQ L+S G KDADV H+K E+ QQ QN+ ++ST ESA S  LGKNL
Sbjct: 595 AIQQQPGSIHQQSNQQALLSTGPKDADVGHVKAEDQQQQQNVSDDSTMESAPS-SLGKNL 653

Query: 457 IHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDL 516
           ++EDDLKAPYA+D+S GVS SLTEP+QV RDTDLSPGQP+QS+QPSG LGVIGRRS+SDL
Sbjct: 654 MNEDDLKAPYAMDTSAGVSGSLTEPSQVPRDTDLSPGQPVQSNQPSGSLGVIGRRSISDL 713

Query: 517 GAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQ 576
           GAIGD+LSG+ V+SGGMHDQ+YN+QMLE+AFYKLPQPKDSERAR+Y PRHPAVTPPSYPQ
Sbjct: 714 GAIGDTLSGSAVNSGGMHDQLYNLQMLEAAFYKLPQPKDSERARNYTPRHPAVTPPSYPQ 773

Query: 577 VQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWF 636
           VQAPIV+NPAFWERL LD++GTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWF
Sbjct: 774 VQAPIVNNPAFWERLGLDTFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWF 833

Query: 637 QRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 691
           QRHEEPKVA DEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Sbjct: 834 QRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 888

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125888|ref|XP_002319700.1| predicted protein [Populus trichocarpa] gi|222858076|gb|EEE95623.1| predicted protein [Populus trichocarpa]

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/716 (71%), Positives = 581/716 (81%), Gaps = 39/716 (5%)

Query: 2   KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLED 61
           KLELILRLLDNDELSPEQVNDVKD L+DYVERNQ+DF++FSDVD+LY+ LPLDKVESLED
Sbjct: 184 KLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDDLYNSLPLDKVESLED 243

Query: 62  LVTIGPPGLVK-------------------ATVISTHQQVTSVQEQGEDTASQDSNSDVA 102
           LVTIGPPGLVK                   ATV STH +   VQ+Q +DT SQDSNSD+ 
Sbjct: 244 LVTIGPPGLVKGAPVHSLKTSLVTSAPQMPATVASTHHEGAVVQDQADDTTSQDSNSDIV 303

Query: 103 ARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGP 162
           ARTPPAKSS VGS+A+    G   PIS+NV AQTL + S  SP LPGS+SVRGV +N  P
Sbjct: 304 ARTPPAKSSMVGSSAAATPTGNHAPISVNVQAQTLHDLSAASPTLPGSTSVRGVLENAAP 363

Query: 163 ISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDV---RVMGRGGLSSQPSSSIPLSSATAV 219
            + S P  L +S KEE++  FPGRRSSPSL D    R +GRGGLSSQPSSSIPLS    +
Sbjct: 364 FNPSSPATLGNSMKEEEIAGFPGRRSSPSLADAGLARGIGRGGLSSQPSSSIPLS-PVVI 422

Query: 220 PSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSID 279
           PSNG  G+VPL SD+AKRNILG ++R+GS+GMVQ L SPLSNRMIL QA    DGT ++D
Sbjct: 423 PSNGAHGSVPLASDIAKRNILGNDDRIGSAGMVQPLASPLSNRMILPQAG---DGTSAVD 479

Query: 280 SNNAGETVAMAGRVFTPSM-GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQV 338
           +++AGE   M GRVF+P + GMQWR G+SFQNQNEPGQFR RTEIAPDQREKFLQRLQQV
Sbjct: 480 TSSAGEAATMGGRVFSPLVTGMQWRPGSSFQNQNEPGQFRARTEIAPDQREKFLQRLQQV 539

Query: 339 QQQGHSNLLGMP--LGGN-KQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTS 395
           QQQGHSN+LGMP   GGN KQ+S+QQNPLLQQ  +  SS  +QA LGLGVQA G N+VTS
Sbjct: 540 QQQGHSNILGMPPLTGGNHKQYSAQQNPLLQQ-FNSQSSSVSQASLGLGVQASGFNTVTS 598

Query: 396 ASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKN 455
           A+LQQ PN IHQQSSQQ +MS G KDA      V+E Q  QNLPE+ST +SA + GLGK+
Sbjct: 599 AALQQ-PNSIHQQSSQQVVMSSGAKDA------VDEQQLKQNLPEDSTTKSALTSGLGKS 651

Query: 456 LIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSD 515
           L++ED+L +PYA+D+S G S SLTEP QV RD DLSPGQ LQSSQPS GLGVIGRRSVSD
Sbjct: 652 LVNEDELTSPYAMDTSAGASGSLTEPLQVPRDIDLSPGQLLQSSQPSSGLGVIGRRSVSD 711

Query: 516 LGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYP 575
           LGAIGD+L+G+ V+SG MH+Q+YN+QMLE+A++KLPQPKDSERARSYIPRHPA TPPSYP
Sbjct: 712 LGAIGDNLTGSAVNSGAMHNQLYNLQMLEAAYHKLPQPKDSERARSYIPRHPAATPPSYP 771

Query: 576 QVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW 635
           QVQ P+ SNPAFWERLS+ SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW
Sbjct: 772 QVQLPMASNPAFWERLSMHSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW 831

Query: 636 FQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 691
           FQRHEEPKV  DE+EQGTYVYFDFH+ N+D Q GWCQRIKTEFTFEYNYLEDELIV
Sbjct: 832 FQRHEEPKVTTDEYEQGTYVYFDFHVGNEDKQ-GWCQRIKTEFTFEYNYLEDELIV 886

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559538|ref|XP_003548056.1| PREDICTED: uncharacterized protein LOC100819202 [Glycine max]

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/714 (64%), Positives = 559/714 (78%), Gaps = 29/714 (4%)

Query: 2   KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLED 61
           K E ILRLLDNDELSPEQVNDVKD L+DYV+RNQDDFEEFSDVDELY  LPLDKVESLED
Sbjct: 184 KCEFILRLLDNDELSPEQVNDVKDFLDDYVDRNQDDFEEFSDVDELYSSLPLDKVESLED 243

Query: 62  LVTIGPPGLVKATVISTHQQV---------------TSVQEQGEDTASQDSNSDVAARTP 106
           +VTI PPG  K T + + +                 +S QEQ +DTASQDSNSD  ARTP
Sbjct: 244 IVTI-PPGPAKVTPVLSLKPSVAASASASQTSVCIPSSFQEQADDTASQDSNSDFVARTP 302

Query: 107 PAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS 166
           P KSS V  TA+TPA   ATP+S+NVP   LS+    + V+PGS+SV+   + + P+ +S
Sbjct: 303 PPKSSIVSPTATTPAGNFATPVSMNVPVPNLSSPPAIASVMPGSNSVQSSLEISSPVDAS 362

Query: 167 PPVNLTSSTKEEDVGNFPGRRSSPSLTDV---RVMGRGGLSSQPSSSIPLSSATAVPSNG 223
             VN +S+ KEE++ +FPG+R SPSL+DV   R + R  +S+Q ++SIPL+S   V SNG
Sbjct: 363 SFVNQSSTMKEEEINSFPGQRPSPSLSDVTLVRNISRNSVSNQATNSIPLASGNMVSSNG 422

Query: 224 NLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNA 283
            LG+VP   ++ KRNIL  ++RLGS+GMVQ LVSPLSNRMI+ Q A+ NDGT S+DS++ 
Sbjct: 423 PLGSVPSAPEITKRNILVGDDRLGSNGMVQPLVSPLSNRMIMPQVARPNDGTSSVDSSSV 482

Query: 284 GETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQ 341
            E   ++GRVF+PS   GMQWR+G+ FQNQN+    RGRTEIAPDQRE++LQ+LQQVQQQ
Sbjct: 483 NEAATVSGRVFSPSAVPGMQWRSGSPFQNQND--VVRGRTEIAPDQRERYLQKLQQVQQQ 540

Query: 342 GHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSAS 397
           G S +L MP  + GN KQFS+QQ NPLLQQFNSQGSS+++Q+G+GLGVQ+PG++ + S S
Sbjct: 541 GQSAILNMPSFVAGNPKQFSAQQQNPLLQQFNSQGSSVASQSGVGLGVQSPGLSGIASTS 600

Query: 398 LQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLI 457
           L Q PN +H  SSQQ+L+    KDADV + K +EPQQ Q  P++S  ES +S G+GKN +
Sbjct: 601 LPQPPNSVHSPSSQQSLLLVVSKDADVGNSKGDEPQQ-QIFPDDSGTESTASNGIGKNFV 659

Query: 458 HEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLG 517
           +ED+LK+ YA+DS  GV ASL EPAQ  RD DLSPG PLQS+Q +G LGVIGR S +DLG
Sbjct: 660 NEDELKSTYAVDSPAGVPASLPEPAQTSRDIDLSPGLPLQSNQRTGNLGVIGRSS-TDLG 718

Query: 518 AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQV 577
           A+GD+ S +T +SGG+ DQ+Y +QMLE+A  KLPQPKDSER R+Y P+HP +TPPS+PQV
Sbjct: 719 ALGDNFSASTANSGGVRDQLYYLQMLEAAHLKLPQPKDSERPRTYTPKHPTITPPSFPQV 778

Query: 578 QAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQ 637
           QAPIV+NPAFWER+ ++ YGTDTLFFAFYYQQNTYQQY+AAKELKKQSWRYHRKYNTWFQ
Sbjct: 779 QAPIVNNPAFWERVGIEQYGTDTLFFAFYYQQNTYQQYMAAKELKKQSWRYHRKYNTWFQ 838

Query: 638 RHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 691
           RHEEPKVA DE+EQGTYVYFDFHIANDDLQHGWCQRIKT+FTFEYNYLEDE IV
Sbjct: 839 RHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTDFTFEYNYLEDEPIV 892

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560386|ref|XP_003548473.1| PREDICTED: uncharacterized protein LOC100783415 [Glycine max]

 Score =  846 bits (2185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/719 (65%), Positives = 558/719 (77%), Gaps = 47/719 (6%)

Query: 2   KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLED 61
           K E ILRLLDNDELSPE+VNDVKD L+DYVERNQDDF+EF DVDELY  LPLDKVE+LED
Sbjct: 184 KCEFILRLLDNDELSPEEVNDVKDFLDDYVERNQDDFDEFDDVDELYSSLPLDKVETLED 243

Query: 62  LVTIGPPGLVKAT--------------------VISTHQQVTSVQEQGEDTASQDSNSDV 101
           LVTI PPGL K                      +IS HQ  TSVQEQ +DT SQDSNSD+
Sbjct: 244 LVTI-PPGLSKVAPSLSLKNTLTVSASQSASASLISNHQD-TSVQEQADDTESQDSNSDI 301

Query: 102 AARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPV--LPGSSSVRGVFDN 159
            A+TPP KS G+ S  STP    ATP+S+N+    LS A    PV  LP S+SVR V +N
Sbjct: 302 VAKTPPPKSGGISSATSTPVGNHATPVSVNISGHNLSGA----PVAALPSSNSVRNVLEN 357

Query: 160 TGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVM-GRGGLSSQPSSSIPLSSATA 218
           T  +++S  VN ++STKEED+ +FP RR SPSL+D  ++  R  LS+Q ++S+PL S   
Sbjct: 358 TN-VTNSSSVNQSTSTKEEDINSFPSRRPSPSLSDATLLRDRNSLSNQATASVPLGSGNM 416

Query: 219 VPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSI 278
           V SN  LG+V   S++AKRNI+GA++RLGSSGMVQ LVSPLSNR+IL QAAK NDG  S+
Sbjct: 417 VSSNVALGSVSSASEIAKRNIMGADDRLGSSGMVQPLVSPLSNRLILPQAAKANDGIVSV 476

Query: 279 DSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQ 336
           DS+   E  A AGRVF+PS   GMQWR G+ FQNQN+    RGRTEIAPDQREKFLQ+ Q
Sbjct: 477 DSSTVNE--AAAGRVFSPSGVPGMQWRPGSPFQNQNDA--LRGRTEIAPDQREKFLQKYQ 532

Query: 337 QVQQQGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNS 392
           QVQQ GHS LL MP  +GGN KQFS+QQ NPLLQQFNS GSS+S+Q+G+GLGVQ+  +  
Sbjct: 533 QVQQ-GHSTLLNMPSLVGGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLGG 591

Query: 393 VTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGL 452
           ++SASLQQ PNP+H  SSQQ LM       DV + K+EE QQ QN P++ST ES +S G+
Sbjct: 592 ISSASLQQPPNPVHSPSSQQPLM------PDVGNSKIEEQQQHQNFPDDSTIESIASTGI 645

Query: 453 GKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRS 512
           GKNLI+EDD K+ Y +DS   VSASL E AQ  RD DLSPGQPLQS+Q +G LGVIGRR+
Sbjct: 646 GKNLINEDDSKSAYTVDSPAAVSASLPESAQTSRDIDLSPGQPLQSNQLTGNLGVIGRRN 705

Query: 513 VSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPP 572
            ++ GAIGD+ SG+ VSSGG+ DQ+YN+QMLE+A +K+P PKDSER R+Y P+HPA+TPP
Sbjct: 706 GAEHGAIGDNFSGSNVSSGGVRDQLYNLQMLEAAHFKIPLPKDSERPRTYTPKHPAITPP 765

Query: 573 SYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKY 632
           SYPQVQAPIV+NPAFWER+ L+ +GTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKY
Sbjct: 766 SYPQVQAPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKY 825

Query: 633 NTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 691
           NTWFQRHEEPKVA DE+EQGTYVYFDFHIANDD+QHGWCQRIKTEFTFEYNYLED+L+V
Sbjct: 826 NTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLV 884

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144772|ref|XP_002325409.1| predicted protein [Populus trichocarpa] gi|222862284|gb|EEE99790.1| predicted protein [Populus trichocarpa]

 Score =  845 bits (2182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/722 (67%), Positives = 566/722 (78%), Gaps = 42/722 (5%)

Query: 2   KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLED 61
           KLELILRLLDNDELSPEQVNDVKD L+DYVERNQ+DF++FSDVDELY+ LPLD +ESLED
Sbjct: 184 KLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDELYNSLPLDNLESLED 243

Query: 62  LVTIGPPGLVK----------------------ATVISTHQQVTSVQEQGEDTASQDSNS 99
           LV IGPPGLVK                      ATV S   Q    QEQ +DTASQDSNS
Sbjct: 244 LVIIGPPGLVKGAPVPVLKTSLAITAPQAPQTPATVSSPPHQSVVGQEQADDTASQDSNS 303

Query: 100 DVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDN 159
           D+ ARTP AKS  VGS+A++   G   PIS+NV  QTL +    SP LPGSSSVRGV +N
Sbjct: 304 DIVARTP-AKSGMVGSSAASTPTGNHAPISVNVQVQTLPSLLAVSPTLPGSSSVRGVLEN 362

Query: 160 TGPISSS--PPVNLTSSTKEEDVGNFPGRRSS-PSLTDV---RVMGRGGLSSQPSSSIPL 213
             P + S     N  +S K+E++  FPG RSS PSL D    R +GRGGLSSQPSSSI L
Sbjct: 363 AAPANPSHVTLTNAANSAKDEEIAGFPGHRSSSPSLVDTGLARGIGRGGLSSQPSSSISL 422

Query: 214 SSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGND 273
           S    +PSNG LG+VP  SD+AKRN+LG ++RLGS GMVQ  VSPLSNRM+L  A+K +D
Sbjct: 423 SPGV-IPSNGALGSVPSASDIAKRNVLGTDDRLGSGGMVQPSVSPLSNRMMLPHASKASD 481

Query: 274 GTGSIDSNNAGETVAMAGRVFTPSM-GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFL 332
           GTG++DS+NAG+   ++GRVF+P + GMQWR G+SFQ+QNEPGQFR RTEIAPDQREKFL
Sbjct: 482 GTGAVDSSNAGDAATLSGRVFSPLVTGMQWRPGSSFQSQNEPGQFRARTEIAPDQREKFL 541

Query: 333 QRLQQVQQQGHSNLLGMP---LGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 389
           QRLQQVQQQGHSN+LGMP    G +KQF +QQNPLLQQ  +  SS  +Q  LG+GVQA G
Sbjct: 542 QRLQQVQQQGHSNILGMPPLASGNHKQFPTQQNPLLQQ-FNSQSSSISQGSLGIGVQAAG 600

Query: 390 MNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASS 449
            N+ TSA+LQQ PN IHQQ++QQ +MS     ++V H  VEE Q  QNLPE+S+ ESA +
Sbjct: 601 FNTATSAALQQ-PNSIHQQANQQVVMS-----SEVGHPSVEEQQLKQNLPEDSSTESAPT 654

Query: 450 PGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIG 509
            GLGK+L++ED+L A YA+D+S G S SLTE  QV RD DLSPGQPLQSSQPS  LGVIG
Sbjct: 655 SGLGKSLVNEDELTASYAMDTSAGASGSLTESVQVPRDIDLSPGQPLQSSQPSSSLGVIG 714

Query: 510 RRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAV 569
           RRSVSDLGAIGD+++G+ +++G MH+Q YN +ML++A++KLPQPKDSERARSYIPRHPA 
Sbjct: 715 RRSVSDLGAIGDNINGSAINAGAMHNQSYNFEMLDAAYHKLPQPKDSERARSYIPRHPAA 774

Query: 570 TPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 629
           TPPSYPQVQAP+ SNPAFWERLS+DS GTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH
Sbjct: 775 TPPSYPQVQAPMASNPAFWERLSMDSVGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 834

Query: 630 RKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDEL 689
           RKYNTWFQRHEEPKV  DE+EQGTYVYFDFH+ N+D Q GWCQRIKTEFTF+YNYLEDEL
Sbjct: 835 RKYNTWFQRHEEPKVTTDEYEQGTYVYFDFHVGNEDKQ-GWCQRIKTEFTFQYNYLEDEL 893

Query: 690 IV 691
            V
Sbjct: 894 SV 895

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446768|ref|XP_004141143.1| PREDICTED: uncharacterized protein LOC101206210 [Cucumis sativus] gi|449509538|ref|XP_004163617.1| PREDICTED: uncharacterized LOC101206210 [Cucumis sativus]

 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/721 (64%), Positives = 545/721 (75%), Gaps = 33/721 (4%)

Query: 1   MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLE 60
           MKLELILRLLDNDELSPEQVNDVKD LEDYVERNQ+DF+EFSDVDELY  LPLDKVESLE
Sbjct: 183 MKLELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVDELYSSLPLDKVESLE 242

Query: 61  DLVTIGPPGLVK-------------------ATVISTHQQVTSVQEQGEDTASQDSNSDV 101
           DLV I PP LVK                    T   +HQQ T + +Q +D+   D N D+
Sbjct: 243 DLVAICPPSLVKGTPTLNVKTTLATSATQAPVTAAPSHQQTTGLPDQVDDSTLPDGNIDI 302

Query: 102 AARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTG 161
             +TPP+K+S +GS+A+T   G     S    A   S  S TS +LPGSS+VR V + T 
Sbjct: 303 LLKTPPSKNSVLGSSAATTPTGNQAASSSLNGAVHGSGISATSSILPGSSAVRAVLETTA 362

Query: 162 PISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRV--MGRGGLSSQPSSSIPLSSATAV 219
             +SSP VN+ +S K+E++ +FPGR+ SPS + +    MGRG +++QP S+   +S   V
Sbjct: 363 APNSSP-VNMPTSAKDEEIASFPGRKLSPSESGLVRGGMGRGVIANQPPSTSSHTSGIVV 421

Query: 220 PSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSID 279
           PSN  LG V   S+V KRNI+G EER GS G+VQS+VSPLSNR+ L   AK +DGT  +D
Sbjct: 422 PSNITLGNVSSASEVTKRNIMGVEERAGS-GIVQSVVSPLSNRLALPTTAKVSDGTTMVD 480

Query: 280 SNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQ 337
             +  +  A+ GRVF+P++   MQWR G+SFQN NE GQFRGR EIAPDQREKFLQRLQQ
Sbjct: 481 PTSVSDAAAIGGRVFSPTVVSSMQWRPGSSFQNPNEGGQFRGRAEIAPDQREKFLQRLQQ 540

Query: 338 VQQQGHSNLLGMPLGGNKQ---FSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMN--S 392
           VQQQGHS LLGM LGG       S QQ+ LLQQFNSQ SS+S+QAGLG+GVQAPG+N  +
Sbjct: 541 VQQQGHSTLLGMTLGGGNHKQFSSQQQSSLLQQFNSQNSSVSSQAGLGIGVQAPGVNPVA 600

Query: 393 VTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPE--ESTPESASSP 450
           VTS SLQQQPN   QQS+QQ L + G KD+DV H KVEE QQ Q      E T +SA+  
Sbjct: 601 VTSGSLQQQPNSF-QQSNQQALTTSGAKDSDVVHSKVEEEQQQQQQQSLLEDTTDSAAVS 659

Query: 451 GLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGR 510
            LGKNL+ +DDLK  Y +D+  G++ASLTE A V R+ DLSPGQPLQ  QPSGGLGVIGR
Sbjct: 660 VLGKNLMSDDDLKGSYTVDTPVGITASLTETASVTREDDLSPGQPLQPGQPSGGLGVIGR 719

Query: 511 RSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVT 570
           RSVSDLGAIGD+L G+++++GGMHDQ YN+QMLE+AFYKLPQPKDSER RSY PRHPA+T
Sbjct: 720 RSVSDLGAIGDNLGGSSMTTGGMHDQFYNLQMLEAAFYKLPQPKDSERPRSYTPRHPAIT 779

Query: 571 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 630
           PPSYPQVQAPI++NPA W+RL L++YGTDTLFFAFYYQ NTYQQYLAA+ELKKQSWRYHR
Sbjct: 780 PPSYPQVQAPIINNPALWDRLGLETYGTDTLFFAFYYQPNTYQQYLAARELKKQSWRYHR 839

Query: 631 KYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI 690
           KY TWFQRHEEPKVA DE+EQGTYVYFDFH+ NDDLQHGWCQRIKTEFTFEYNYLEDEL 
Sbjct: 840 KYQTWFQRHEEPKVATDEYEQGTYVYFDFHVNNDDLQHGWCQRIKTEFTFEYNYLEDELN 899

Query: 691 V 691
           +
Sbjct: 900 I 900

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571684|ref|XP_003554004.1| PREDICTED: uncharacterized protein LOC100785965 [Glycine max]

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/719 (65%), Positives = 554/719 (77%), Gaps = 49/719 (6%)

Query: 2   KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLED 61
           K E ILRLLDNDELSPE+VNDVKD L+DYVERNQDDF+EF DVDELY  LPLDKVE+LED
Sbjct: 184 KCEFILRLLDNDELSPEEVNDVKDFLDDYVERNQDDFDEFDDVDELYSSLPLDKVETLED 243

Query: 62  LVTIGPPGLVK-ATVISTHQQVT---------------SVQEQGEDTASQDSNSDVAART 105
           LVTI PPGL K A  +S    +T               SVQEQ +DT SQDSNSD+ A+T
Sbjct: 244 LVTI-PPGLSKVAPSLSLKNTLTVSASQSASASQTSDTSVQEQADDTTSQDSNSDIVAKT 302

Query: 106 PPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS 165
           PP KS G+ S  STP V  ATP+S+NV    LS+A     VLPGS+SVR V +NT  I+S
Sbjct: 303 PPCKSGGISSATSTP-VDHATPVSVNVSGHNLSSAP--VAVLPGSNSVRNVLENTNVINS 359

Query: 166 SPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVM-GRGGLSSQPSSSIPLSSATAVPSNGN 224
           S  VN ++ST EE++ +FP RR SPSL+D  ++ GR  LS+Q ++SIPL S   V SNG 
Sbjct: 360 SS-VNQSTSTNEEEINSFPSRRPSPSLSDATLLKGRSSLSNQATASIPLGSGNMVSSNGA 418

Query: 225 LGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAG 284
           LG+V   S++AKRNILGA++RLGSSGMVQ LVSPLSNR+IL QAAK NDGT  +DS+   
Sbjct: 419 LGSVSSASEIAKRNILGADDRLGSSGMVQPLVSPLSNRLILPQAAKANDGTVLVDSSTVN 478

Query: 285 ETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQ-- 340
           E  A +GRVF+PS   GMQWR G+ FQNQN+    RGRTEIAPDQREKFLQ+ QQVQQ  
Sbjct: 479 E--AASGRVFSPSGVPGMQWRPGSPFQNQNDA--LRGRTEIAPDQREKFLQKYQQVQQGN 534

Query: 341 ----QGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNS 392
                 +S LL MP  +GGN KQFS+QQ NPLLQQ           +G+GLGVQ+  +  
Sbjct: 535 STLLNMNSTLLNMPSLVGGNHKQFSAQQQNPLLQQ-----------SGIGLGVQSTSLVG 583

Query: 393 VTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGL 452
           ++SASLQQ PNP+H  SSQQ LM G   DADV + K+EE QQ QN P++ST ES +S G+
Sbjct: 584 ISSASLQQPPNPVHSPSSQQPLMPGVSIDADVGNSKIEEQQQHQNFPDDSTTESTASTGI 643

Query: 453 GKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRS 512
           GKNLI+EDD K+ +A+DS  GVSASL E AQ  RD DLSPGQPLQ +QP+G LGVIGRR+
Sbjct: 644 GKNLINEDDSKSAFALDSPAGVSASLPESAQTSRDIDLSPGQPLQPNQPTGNLGVIGRRN 703

Query: 513 VSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPP 572
            ++ GAIGD+ SG++VSSGG+ DQ+YN+QMLE+A +K+P PKDSER R+Y P+HP +TPP
Sbjct: 704 GAEHGAIGDNFSGSSVSSGGVRDQLYNLQMLEAAHFKIPLPKDSERPRTYTPKHPTITPP 763

Query: 573 SYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKY 632
           SYPQVQAPIV+NPAFWER+ L+ +GTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKY
Sbjct: 764 SYPQVQAPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKY 823

Query: 633 NTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 691
           NTWFQRHEEPK+A DE+EQGTYVYFDFHIANDD+QHGWCQRIKTEFTFEYNYLED+L+V
Sbjct: 824 NTWFQRHEEPKIATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLV 882

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508635|ref|XP_003624606.1| CCR4-NOT transcription complex subunit [Medicago truncatula] gi|124365585|gb|ABN09819.1| Not CCR4-Not complex component, N-terminal; tRNA-binding arm [Medicago truncatula] gi|355499621|gb|AES80824.1| CCR4-NOT transcription complex subunit [Medicago truncatula]

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/733 (62%), Positives = 542/733 (73%), Gaps = 59/733 (8%)

Query: 2   KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLED 61
           K EL+LRLLDNDELSPE+VNDVKD L+DYVERNQDDF+EF DVDELY  LPLDKV++LED
Sbjct: 184 KCELVLRLLDNDELSPEEVNDVKDFLDDYVERNQDDFDEFDDVDELYSSLPLDKVDTLED 243

Query: 62  LVTIGPPGLVKATVIS--------THQQVTSV---------------------------- 85
           LVTI P  +  A  IS        T + + ++                            
Sbjct: 244 LVTI-PTSVAVAKTISSLPLDEGKTLEDLVTIPTGLAKVAPGLSLKTPLAASASQSASSQ 302

Query: 86  -QEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTS 144
             EQ ++TASQDSNSD+ A+TPP KS G+ S+ STP    ATP S+NV    LS+A   +
Sbjct: 303 TSEQADETASQDSNSDIVAKTPPPKSGGISSSTSTPTGNHATPASVNVSGLNLSSAP-AA 361

Query: 145 PVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR-VMGRGGL 203
            +LPGS+SVR + +N         VN ++S KEE++ NFP RR SPSL+D   V GR  L
Sbjct: 362 AILPGSNSVRNILENA-------IVNQSTSPKEEEINNFPTRRPSPSLSDAALVRGRNSL 414

Query: 204 SSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRM 263
           S+Q ++SIPL S   V S G LG VP  S++ KRNILGA++RLGSSGMVQ LVSPLSNR+
Sbjct: 415 SNQATASIPLGSGNTVSSIGALGVVPSASEITKRNILGADDRLGSSGMVQPLVSPLSNRL 474

Query: 264 ILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRT 321
           IL Q  K NDG  S+DS+   E  A++GRVF+PS+  GMQWR G+ FQNQN+ GQ RGRT
Sbjct: 475 ILPQIGKANDGAASVDSSIVNEAAAVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRGRT 534

Query: 322 EIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQNPLLQQ-FNSQGSSISA 377
           EIAPDQREKFLQ+ QQVQQQG S LL MP  +GGN KQFSSQQ   L Q FNSQGSS+S+
Sbjct: 535 EIAPDQREKFLQKFQQVQQQGPSTLLNMPSLVGGNHKQFSSQQQSPLLQQFNSQGSSVSS 594

Query: 378 QAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQN 437
           Q+ +GLG Q+P +  ++S SLQQ  N +H  S Q    +G  KDAD    K EE QQ QN
Sbjct: 595 QSSMGLGAQSPSLGGISSVSLQQL-NSVHSPSGQHPF-AGVAKDAD----KFEEHQQHQN 648

Query: 438 LPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQ 497
            P+EST ES SS G+GKNL  EDDLK+ YA+DS  G+SASL E AQ  RD DLSPGQPLQ
Sbjct: 649 FPDESTTESTSSTGIGKNLTVEDDLKSAYALDSPAGLSASLPEAAQTFRDIDLSPGQPLQ 708

Query: 498 SSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSE 557
           S+Q +G LGVIGRR+  +LGAIGDS   ++V+SGG+ DQ+YN+QMLE+A +++PQP+DSE
Sbjct: 709 SNQSTGNLGVIGRRNGVELGAIGDSFGASSVNSGGVRDQLYNLQMLEAAHFRMPQPRDSE 768

Query: 558 RARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLA 617
           R R+Y PRHPA+TP SYPQVQAPIV+NPAFWERL L+ +GTDTLFFAFYYQQNTYQQYLA
Sbjct: 769 RPRTYTPRHPAITPSSYPQVQAPIVNNPAFWERLGLEPFGTDTLFFAFYYQQNTYQQYLA 828

Query: 618 AKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTE 677
           AKELKKQSWRYHRKYNTWFQRHEEPKVA D++EQGTYVYFDFHIANDDLQHGWCQRIK +
Sbjct: 829 AKELKKQSWRYHRKYNTWFQRHEEPKVATDDYEQGTYVYFDFHIANDDLQHGWCQRIKND 888

Query: 678 FTFEYNYLEDELI 690
           FTFEYNYLEDEL+
Sbjct: 889 FTFEYNYLEDELV 901

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
TAIR|locus:2172389	845	AT5G18230 [Arabidopsis thalian	0.552	0.452	0.506	2.8e-165
FB|FBgn0033029	844	l(2)NC136 "lethal (2) NC136" [	0.201	0.164	0.549	1.3e-48
UNIPROTKB|F6XXD6	753	CNOT3 "Uncharacterized protein	0.202	0.185	0.542	3e-48
DICTYBASE|DDB_G0272056	866	DDB_G0272056 "putative CCR4-NO	0.208	0.166	0.528	1e-47
UNIPROTKB|O75175	753	CNOT3 "CCR4-NOT transcription	0.202	0.185	0.542	1.6e-47
MGI|MGI:2385261	751	Cnot3 "CCR4-NOT transcription	0.202	0.186	0.542	8.3e-47
UNIPROTKB|E2R344	710	CNOT3 "Uncharacterized protein	0.201	0.195	0.535	2.3e-46
UNIPROTKB|E1BCS1	744	CNOT3 "Uncharacterized protein	0.202	0.188	0.542	2.4e-46
RGD|1304771	751	Cnot3 "CCR4-NOT transcription	0.202	0.186	0.542	2.8e-46
ZFIN|ZDB-GENE-040927-6	901	cnot3a "CCR4-NOT transcription	0.202	0.155	0.522	2.7e-42

TAIR|locus:2172389 AT5G18230 [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 2.8e-165, Sum P(2) = 2.8e-165
 Identities = 218/430 (50%), Positives = 268/430 (62%)

Query:     1 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLE 60
             +KLELILRLLDNDELSPEQVNDVKD L+DYVERNQDDF+EFSDVDELY  LPLD+VE LE
Sbjct:   185 IKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEVEGLE 244

Query:    61 DLVTIGP-----PGLVKATVISTHQQVTSV------QEQGEDTASQDSNSDVAARTPPAK 109
             DLVT GP     P  +K+++ ++  QV S+      QE+ EDT+  DS++++  +TPP K
Sbjct:   245 DLVTAGPLVKGTPLSMKSSLAASASQVRSISLPTHHQEKTEDTSLPDSSAEMVPKTPPPK 304

Query:   110 S-SGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPP 168
             + +G+ S  STPA G   P S+NVPA    N SNTS  L  S   +   ++ G +S   P
Sbjct:   305 NGAGLHSAPSTPAGG--RP-SLNVPA---GNVSNTSVTLSTSIPTQTSIESMGSLS---P 355

Query:   169 VNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAV 228
             V    + KEED    P R+   S+ D  + G G               + +P+NG+  + 
Sbjct:   356 V----AAKEEDATTLPSRKPPSSVADTPLRGIG-RVGIPNQPQPSQPPSPIPANGSRISA 410

Query:   229 PLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVA 288
                ++VAKRNI+G E        VQ L SPLS +M+L   AKGNDGT S DSN  G+  A
Sbjct:   411 TSAAEVAKRNIMGVESN------VQPLTSPLS-KMVLPPTAKGNDGTAS-DSN-PGDVAA 461

Query:   289 MAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNL 346
               GR F+PS+  G QWR G+ FQ+QNE    RGRTEIAPDQREKF          GH NL
Sbjct:   462 SIGRAFSPSIVSGSQWRPGSPFQSQNET--VRGRTEIAPDQREKFLQRLQQVQQ-GHGNL 518

Query:   347 LGMPL--GGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP 402
             LG+P   GGN KQFSSQQ NPLLQQ     SSIS    LG+GVQAPG N ++SASLQQQ 
Sbjct:   519 LGIPSLSGGNEKQFSSQQQNPLLQQ----SSSISPHGSLGIGVQAPGFNVMSSASLQQQS 574

Query:   403 NPIHQQSSQQ 412
             N + QQ  QQ
Sbjct:   575 NAMSQQLGQQ 584

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

FB|FBgn0033029 l(2)NC136 "lethal (2) NC136" [Drosophila melanogaster (taxid:7227)]

 Score = 440 (159.9 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
 Identities = 84/153 (54%), Positives = 104/153 (67%)

Query:   536 QMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDS 595
             QM   QM+E+A+Y LPQP D+E+ ++Y  R P +TP  YPQ Q PI     F++RLS   
Sbjct:   703 QM-QFQMMEAAYYHLPQPMDTEKLQTYFHRAPVLTPSHYPQAQMPIYDTVEFYQRLS--- 758

Query:   596 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYV 655
               T+TLFF FYY + +  QYLAAK LKKQSWR+H KY  WFQRHEEPK+ ND++EQGTY+
Sbjct:   759 --TETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKIINDDYEQGTYI 816

Query:   656 YFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 688
             YFD+          W QR K  FTFEY YLED+
Sbjct:   817 YFDYE--------KWSQRKKEGFTFEYKYLEDK 841

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F6XXD6 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 426 (155.0 bits), Expect = 3.0e-48, Sum P(3) = 3.0e-48
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667

Query:   595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724

Query:   655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
             +YFD+          W QR K  FTFEY YLED
Sbjct:   725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

DICTYBASE|DDB_G0272056 DDB_G0272056 "putative CCR4-NOT complex subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 431 (156.8 bits), Expect = 1.0e-47, Sum P(3) = 1.0e-47
 Identities = 83/157 (52%), Positives = 104/157 (66%)

Query:   532 GMHDQMY-NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER 590
             G  + M     M++ +F  LP  KD ER  ++IPR+P   P  YPQ   P+  +P  +E+
Sbjct:   722 GFEEAMILTRHMMDISFKNLPDFKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEK 781

Query:   591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFE 650
               +D     TLFF FY++Q TYQQY AAKELKKQ WRYH+KY TWF+RHEEPK   +EFE
Sbjct:   782 FDID-----TLFFIFYFKQGTYQQYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFE 836

Query:   651 QGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
             QGTYVYFD+       + GWCQR KTEFTFEY +LE+
Sbjct:   837 QGTYVYFDY-------ETGWCQRKKTEFTFEYRFLEE 866

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|O75175 CNOT3 "CCR4-NOT transcription complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 426 (155.0 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667

Query:   595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724

Query:   655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
             +YFD+          W QR K  FTFEY YLED
Sbjct:   725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS

GO:2000036 "regulation of stem cell maintenance" evidence=IMP

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:2385261 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Mus musculus (taxid:10090)]

 Score = 426 (155.0 bits), Expect = 8.3e-47, Sum P(3) = 8.3e-47
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665

Query:   595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722

Query:   655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
             +YFD+          W QR K  FTFEY YLED
Sbjct:   723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:2000036 "regulation of stem cell maintenance" evidence=ISO

UNIPROTKB|E2R344 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 412 (150.1 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
 Identities = 82/153 (53%), Positives = 100/153 (65%)

Query:   535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
             +Q+Y   M E+A++ +P P DSER R++ PR+P  TPP + Q+  P      F++RLS  
Sbjct:   568 EQLYQQAMEEAAWHHMPHPSDSERIRTF-PRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 624

Query:   595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   625 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 681

Query:   655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
             +YFD+          W QR K  FTFEY YLED
Sbjct:   682 IYFDYE--------KWGQRKKEGFTFEYRYLED 706

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BCS1 CNOT3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 426 (155.0 bits), Expect = 2.4e-46, Sum P(3) = 2.4e-46
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   601 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 658

Query:   595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   659 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 715

Query:   655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
             +YFD+          W QR K  FTFEY YLED
Sbjct:   716 IYFDYE--------KWGQRKKEGFTFEYRYLED 740

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1304771 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 426 (155.0 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665

Query:   595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722

Query:   655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
             +YFD+          W QR K  FTFEY YLED
Sbjct:   723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-040927-6 cnot3a "CCR4-NOT transcription complex, subunit 3a" [Danio rerio (taxid:7955)]

 Score = 402 (146.6 bits), Expect = 2.7e-42, Sum P(2) = 2.7e-42
 Identities = 80/153 (52%), Positives = 98/153 (64%)

Query:   535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
             +Q+Y   M E+A+  +P P DSER R Y+ R+P  TPP + Q+      +  F++RLS  
Sbjct:   758 EQLYQQAMQEAAWTHMPHPSDSERIRQYLMRNPCPTPPFHHQMPPHHSDSIEFYQRLS-- 815

Query:   595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
                T+TLFF FYY + T  QYL+AK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   816 ---TETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 872

Query:   655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
             +YFD+          W QR K  FTFEY YLED
Sbjct:   873 IYFDYE--------KWGQRKKEGFTFEYRYLED 897

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	691
pfam04153	131	pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family	1e-57
COG5665	548	COG5665, NOT5, CCR4-NOT transcriptional regulation	5e-33
COG5601	172	COG5601, CDC36, General negative regulator of tran	7e-16
pfam04065	233	pfam04065, Not3, Not1 N-terminal domain, CCR4-Not	2e-11
COG5665	548	COG5665, NOT5, CCR4-NOT transcriptional regulation	2e-06

>gnl|CDD|217931 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family

 Score =  191 bits (486), Expect = 1e-57
 Identities = 66/146 (45%), Positives = 84/146 (57%), Gaps = 17/146 (11%)

Query: 543 LESAFYKLPQPKDS-ERARSY-IPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 600
           L  +F   P P D+ ER   Y IP     TP SYPQ   P   +P+ +++        +T
Sbjct: 1   LHPSFASPPSPSDARERPPQYDIPECYLNTPSSYPQNPPP--LSPSKFQKFD-----DET 53

Query: 601 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFH 660
           LF+ FYY     QQYLAAKELK + WRYH+KY TWF RHEEPKV  DE+E+G+Y+YFD  
Sbjct: 54  LFYIFYYMPGDLQQYLAAKELKNRGWRYHKKYQTWFTRHEEPKVITDEYERGSYIYFDPE 113

Query: 661 IANDDLQHGWCQRIKTEFTFEYNYLE 686
                    W +R K  FT +Y+ LE
Sbjct: 114 S--------WKKRRKENFTLDYSDLE 131

NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5. Length = 131

>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

 Score =  134 bits (337), Expect = 5e-33
 Identities = 56/135 (41%), Positives = 76/135 (56%), Gaps = 12/135 (8%)

Query: 553 PKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTY 612
           P +++  + Y P  P+  P   P       S+   + +  LD     TLFF FY+ Q TY
Sbjct: 423 PNENDTDKKYKPGKPSKAPSKKPDDPLSRFSSARIFMKFDLD-----TLFFIFYHYQGTY 477

Query: 613 QQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQ 672
           QQYLAA+ELKK+SWR+H+KY TWFQR  EPK    + E+G++ YFD+  +       W  
Sbjct: 478 QQYLAARELKKRSWRFHKKYRTWFQREIEPKPITGKSEEGSWRYFDYKKS-------WLA 530

Query: 673 RIKTEFTFEYNYLED 687
           R K +F F Y YLE 
Sbjct: 531 RKKNDFVFNYEYLEK 545

Length = 548

>gnl|CDD|227888 COG5601, CDC36, General negative regulator of transcription subunit [Transcription]

 Score = 75.8 bits (186), Expect = 7e-16
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 35/172 (20%)

Query: 536 QMYNMQM---LESAFYKLPQPKDSE-RARSYI----------PRHPA-VTPPSYPQVQAP 580
           +     +   L S    L +PK  + R  + +          P  P  + P  YP    P
Sbjct: 15  EQSIHDLGKDLLSEILSLVRPKKYQDRPSTTLYSPWAESTKKPVQPMFMLPNCYPNAPNP 74

Query: 581 IVSNPAF---WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW-- 635
               P F    E + +D++  +TLF+ FY   N   Q  A  EL K++WR+H+    W  
Sbjct: 75  ----PIFKVNIEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLT 130

Query: 636 FQRHEEPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLE 686
           F     P  A+   E+G+YV+FD F          W  ++  +F  +Y  + 
Sbjct: 131 FNPGMSPATADHVKERGSYVFFDPFS---------W-SKVSLDFLLDYKAVR 172

Length = 172

>gnl|CDD|217869 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex component

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 29/54 (53%), Positives = 40/54 (74%), Gaps = 2/54 (3%)

Query: 2   KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDK 55
           KLELILRLL+N EL PEQV+D+K+ +E YVE NQ+   +F + + +Y  L LD+
Sbjct: 181 KLELILRLLENGELDPEQVDDIKEDIEYYVESNQE--PDFVEDETIYDDLNLDE 232

Length = 233

>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

 Score = 50.8 bits (121), Expect = 2e-06
 Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 22/191 (11%)

Query: 2   KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLED 61
            LE IL+ L N+E+ PE V + +D ++ YVE N D   +F + D +Y  +  +   S   
Sbjct: 149 NLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDD--PDFIEYDTIYEDMGCEIQPS--- 203

Query: 62  LVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPA 121
             +       +    ++   + S ++Q      +    DV+        S   +T   P 
Sbjct: 204 --SSNNEAPKEGNNQTSLSSIRSSKKQERSPKKKAPQRDVS-------ISDRATTPIAPG 254

Query: 122 VGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLT---SSTKEE 178
           V  A+  SI+     +S    T   L         FDN+   + +  V++    S    E
Sbjct: 255 VESASQ-SISSTPTPVS----TDTPLHTVKDDSIKFDNSTLGTPTTHVSMKKKESENDSE 309

Query: 179 DVGNFPGRRSS 189
              NFP   + 
Sbjct: 310 QQLNFPKDSTD 320

Length = 548

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	691
KOG2150	575	consensus CCR4-NOT transcriptional regulation comp	100.0
COG5665	548	NOT5 CCR4-NOT transcriptional regulation complex,	100.0
PF04153	134	NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR	100.0
COG5601	172	CDC36 General negative regulator of transcription	99.97
KOG2151	312	consensus Predicted transcriptional regulator [Tra	99.54
KOG2151	312	consensus Predicted transcriptional regulator [Tra	99.16

>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=100.00  E-value=2.7e-52  Score=452.28  Aligned_cols=271  Identities=38%  Similarity=0.595  Sum_probs=192.6

Q ss_pred             cccccceeccCCCccccccccccCCCCcCcCcccceecccCC--------------CCcccCcccccCCCCCCCCCCCCC
Q 005538          378 QAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQ--------------KDADVSHLKVEEPQQPQNLPEEST  443 (691)
Q Consensus       378 q~~~~~~~q~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~d~~  443 (691)
                      |++.++|+++++++..++|++...-|++|+.-.|...++...              +.+-+++.-.-..|-..+.|+++.
T Consensus       290 ~~~~~~~~~~~s~~A~aaA~~~~~~~s~~~~~qq~~~~~s~~~P~~~~p~~~~~~~~~st~~~p~~p~~q~~~~~P~~s~  369 (575)
T KOG2150|consen  290 HNGPPIGIDASSSAAPSGAVLAKGSNGQHQSPQQLRIPLSMPPPHSPTPSLKRIQHKVSTLDGPRTPPEQSEENTPLSSA  369 (575)
T ss_pred             cCCCccccCCCccccchhhhcccccccCCCccccccccCCCCCCCCCCccccchhhccccccCCCCCcccccccChhhhc
Confidence            888889999999999999999998888888777776542100              111111111000111122333222


Q ss_pred             CcccCCCCCCCCccccccCCCcccccCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccccccCCCCccccccCC
Q 005538          444 PESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSL  523 (691)
Q Consensus       444 ~e~~~~~~~~~~~~~~d~~~~~~~~d~p~~~~~s~~e~~Q~~Rd~~l~~~Q~~qs~~~~GLLGvI~RmsdpDL~AiG~DL  523 (691)
                      .-.+..     .            --.|.|++-...+..++.-..+..+..+.+++..+--.+...+|...-||+.    
T Consensus       370 k~~~~~-----s------------~~~~~~vp~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~----  428 (575)
T KOG2150|consen  370 KLQASK-----S------------ESPPKGVPELEEEAAASTLSPDSSEPASANTPLSSKEQHSPFELGLSPLGVQ----  428 (575)
T ss_pred             hhccCc-----c------------cCCCCCCCccccccccCCCCCCccccccccCCCCccccccchhhcccccccc----
Confidence            211110     0            0022333333333322222222222222222222222222222222222222    


Q ss_pred             CccccccccccccccchhhHHHHhhcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEE
Q 005538          524 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFF  603 (691)
Q Consensus       524 T~~~~tLG~m~dq~LNLnslE~ly~tFpsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~L~np~lfqKiKi~kFseETLFY  603 (691)
                            .++++++...+.++|.+|..++.|.|+|.++.|.|++|+.+|.+|++++++.+++..+|+|     |+.|||||
T Consensus       429 ------~~~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dTLFf  497 (575)
T KOG2150|consen  429 ------SEITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDTLFF  497 (575)
T ss_pred             ------ccccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccceee
Confidence                  2356999999999999999999999999999999999999999999999999999999999     99999999


Q ss_pred             EeecCCCcHHHHHHHHHHhhcCceeecccceeeecccCCccCCCcceeeeEEEeccccCccccccCcceeecCCeEEech
Q 005538          604 AFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYN  683 (691)
Q Consensus       604 IFY~~PgD~~QllAA~EL~~RgWRYHkk~k~Wf~R~~ePkv~Td~yErGsYiyFD~e~~~d~~~~~W~qr~K~nFtfeY~  683 (691)
                      ||||++|+++|++||+||++|+||||++|.+||+|+.||+.+|+.||+|+|+|||+.        .||+|.|.+|+|+|.
T Consensus       498 iFY~~qgt~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~~--------~W~qrkK~dFtfeY~  569 (575)
T KOG2150|consen  498 IFYYQQGTYEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDYK--------DWSQRKKIDFTFEYQ  569 (575)
T ss_pred             EEeeecchHHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEehh--------Hhhhhhccceeeehh
Confidence            999999999999999999999999999999999999999999999999999999994        899999999999999


Q ss_pred             hhhhh
Q 005538          684 YLEDE  688 (691)
Q Consensus       684 ~LE~r  688 (691)
                      |||+.
T Consensus       570 yLE~~  574 (575)
T KOG2150|consen  570 YLEDS  574 (575)
T ss_pred             hccCC
Confidence            99985

>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=100.00  E-value=2e-41  Score=354.59  Aligned_cols=119  Identities=45%  Similarity=0.889  Sum_probs=114.7

Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeee
Q 005538          558 RARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQ  637 (691)
Q Consensus       558 ppR~Y~PrnP~~tP~cYpq~ppP~L~np~lfqKiKi~kFseETLFYIFY~~PgD~~QllAA~EL~~RgWRYHkk~k~Wf~  637 (691)
                      -.+.|+|+.|+.+|.+||+.|++.|.+..+|.+     |+.||||||||+.+|+++||+||+||++|+||||++|.+||+
T Consensus       428 ~~KkY~P~~P~~~Ps~~P~~PL~~F~S~~if~k-----~D~DTLFfiFY~~~GTyQQY~Aa~eLKk~SWRFHkKY~TWFQ  502 (548)
T COG5665         428 TDKKYKPGKPSKAPSKKPDDPLSRFSSARIFMK-----FDLDTLFFIFYHYQGTYQQYLAARELKKRSWRFHKKYRTWFQ  502 (548)
T ss_pred             hhhccCCCCCCCCCCCCCCCccccccHHHHHHh-----cCccceEEEeeeccchHHHHHHHHHHHhhhhhhhcchhhhhh
Confidence            345899999999999999999999999999999     999999999999999999999999999999999999999999


Q ss_pred             cccCCccCCCcceeeeEEEeccccCccccccCcceeecCCeEEechhhhhh
Q 005538          638 RHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE  688 (691)
Q Consensus       638 R~~ePkv~Td~yErGsYiyFD~e~~~d~~~~~W~qr~K~nFtfeY~~LE~r  688 (691)
                      |+.+|+.+|.+||+|+|.||||+       ..|.+|.|.+|+|.|.|||+.
T Consensus       503 R~~EPK~IT~~~E~Gs~ryFDy~-------~~W~~rKK~DF~F~Y~YLE~~  546 (548)
T COG5665         503 REIEPKPITGKSEEGSWRYFDYK-------KSWLARKKNDFVFNYEYLEKL  546 (548)
T ss_pred             hhcccccccCccccCceeEeecc-------chHHHhhcccceeehhhhhhc
Confidence            99999999999999999999997       689999999999999999974

>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes

Probab=100.00  E-value=2e-38  Score=292.73  Aligned_cols=128  Identities=45%  Similarity=0.910  Sum_probs=114.2

Q ss_pred             HhhcCCCCCCCCcc----CCCC-CCCCCCCCCCCCCCCCCC-CCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHH
Q 005538          546 AFYKLPQPKDSERA----RSYI-PRHPAVTPPSYPQVQAPI-VSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAK  619 (691)
Q Consensus       546 ly~tFpsPwDsEpp----R~Y~-PrnP~~tP~cYpq~ppP~-L~np~lfqKiKi~kFseETLFYIFY~~PgD~~QllAA~  619 (691)
                      |+.+|.+||++.++    ..|. |+.+..+|.||++.+++. ++++.+++|     |++||||||||+||||++|++||+
T Consensus         1 L~~sf~sp~~~~~~~~~~~~y~~P~~~~~~~~~~p~~p~~~~~~~~~~~~k-----~~~eTLFyiFY~~p~~~~Q~~AA~   75 (134)
T PF04153_consen    1 LYSSFASPPSDSDSRQQEPQYQIPSCYLPTPSSYPQRPPPIILDSPEKFQK-----FSEETLFYIFYYMPGDYQQLLAAK   75 (134)
T ss_pred             CccccCCCCCCCCCCCCCCCCCCCCCcCcCccccCCCcCcccccchHHHhh-----cCCceEEEEEeecCCcHHHHHHHH
Confidence            56789999988654    3454 766666788888888776 667777777     999999999999999999999999


Q ss_pred             HHhhcCceeecccceeeecccCCccCCCcceeeeEEEeccccCccccccCcceeecCCeEEechhhh
Q 005538          620 ELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE  686 (691)
Q Consensus       620 EL~~RgWRYHkk~k~Wf~R~~ePkv~Td~yErGsYiyFD~e~~~d~~~~~W~qr~K~nFtfeY~~LE  686 (691)
                      ||++|||||||++++||+|+++++++++.+|+|+|+|||++        +|++++|.||+|+|++||
T Consensus        76 eL~~R~Wryhk~~~~W~~r~~~~~~~~~~~e~g~y~~FD~~--------~W~~~~k~~f~~~y~~LE  134 (134)
T PF04153_consen   76 ELYKRGWRYHKEYKTWFQRDSEPKPITEQYERGSYVYFDPE--------SWEKRRKKNFTFDYSDLE  134 (134)
T ss_pred             HHHHCCcEEecCcCEEeeECCCCCccccceeeeeEEEechH--------HhcCcchhccEEeHHHcC
Confidence            99999999999999999999999999999999999999995        799989999999999998

This family includes NOT2, NOT3 and NOT5.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]

Probab=99.97  E-value=1.8e-33  Score=264.91  Aligned_cols=159  Identities=24%  Similarity=0.479  Sum_probs=132.1

Q ss_pred             cccccccCCCCcc--ccccCCCccccccccccccccch----hhHHHHhhcCCCCCCCCccCCCCCCCCCCCCCCCCCCC
Q 005538          505 LGVIGRRSVSDLG--AIGDSLSGATVSSGGMHDQMYNM----QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQ  578 (691)
Q Consensus       505 LGvI~RmsdpDL~--AiG~DLT~~~~tLG~m~dq~LNL----nslE~ly~tFpsPwDsEppR~Y~PrnP~~tP~cYpq~p  578 (691)
                      +-++ +|.|.+++  .||-||.    +++      +.|    ...+....+|.+||+...-++..|  -+.+|.||+..|
T Consensus         6 ~pl~-~ied~e~s~~~lg~Dl~----s~~------~sl~~p~~~qDr~~~t~~sPwae~tkk~vqp--~f~lP~cy~n~p   72 (172)
T COG5601           6 KPLE-QIEDEEQSIHDLGKDLL----SEI------LSLVRPKKYQDRPSTTLYSPWAESTKKPVQP--MFMLPNCYPNAP   72 (172)
T ss_pred             hhHH-HHHHhhhhHHHhchhHH----HHH------HhhcCcccccccccccccChhhhhccCcccc--hhcCccccCCCC
Confidence            3355 88888887  8999999    666      544    344557778999999885444333  277999999998


Q ss_pred             CCCCCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeeeccc--CCccCCCcceeeeEEE
Q 005538          579 APIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVY  656 (691)
Q Consensus       579 pP~L~np~lfqKiKi~kFseETLFYIFY~~PgD~~QllAA~EL~~RgWRYHkk~k~Wf~R~~--ePkv~Td~yErGsYiy  656 (691)
                      .|+.-+.. .+.+||.+|++||||||||.+|+|++|..|+.||-+|+|||||.+|+|++.+.  +|.+.++..|||+|++
T Consensus        73 ~pp~f~~~-~~~~k~~~f~dETLFyiFY~~P~dvlQe~ay~el~krnwrfhK~lk~wlT~~p~m~P~~~~~~~ergsyvf  151 (172)
T COG5601          73 NPPIFKVN-IEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLTFNPGMSPATADHVKERGSYVF  151 (172)
T ss_pred             CCCceecc-hHHHHHHhhccceeEEEEeeCCcHHHHHHHHHHHHHhchhhhhhheeeeccCCCCCccccccccccceEEE
Confidence            65432344 45689999999999999999999999999999999999999999999999984  7888888999999999


Q ss_pred             eccccCccccccCcceeecCCeEEechhhh
Q 005538          657 FDFHIANDDLQHGWCQRIKTEFTFEYNYLE  686 (691)
Q Consensus       657 FD~e~~~d~~~~~W~qr~K~nFtfeY~~LE  686 (691)
                      |||.        .|+ |++.+|.|+|+.++
T Consensus       152 FDP~--------~W~-k~~~dfll~y~av~  172 (172)
T COG5601         152 FDPF--------SWS-KVSLDFLLDYKAVR  172 (172)
T ss_pred             Ecch--------hHH-HHhHHHHHHHHhhC
Confidence            9995        897 99999999999874

>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.54  E-value=2.3e-15  Score=156.66  Aligned_cols=126  Identities=21%  Similarity=0.260  Sum_probs=96.3

Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCccccc--ccCCCCc--c-ccccCCCccccccccccccccchhhHHHHhhcCCCCCC
Q 005538          481 PAQVVRDTDLSPGQPLQSSQPSGGLGVIG--RRSVSDL--G-AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKD  555 (691)
Q Consensus       481 ~~Q~~Rd~~l~~~Q~~qs~~~~GLLGvI~--RmsdpDL--~-AiG~DLT~~~~tLG~m~dq~LNLnslE~ly~tFpsPwD  555 (691)
                      .+|...|..+-.....+....+|+.|++.  |+.+.|-  . .+|.||+    ++|      |+|+..+.++.+|-+||.
T Consensus       182 g~q~~Pdg~v~niP~~m~t~~fgm~gLL~~ir~~~~~g~~~l~lg~Dl~----~ll------lsla~~~di~~~F~~P~~  251 (312)
T KOG2151|consen  182 GSQPTPDGYVPNIPSGMETGQFGMKGLLTLIRGAQGEGQTTLPLGADLN----SLL------LSLAVPEDIIPTFQGPWG  251 (312)
T ss_pred             ccccCCCCcccCCCcchhhhhhhhhcchhhheecccCcceeeccCCChh----hhh------ccccccccccccccCCcc
Confidence            34444555554334444444565555544  7777652  2 8999999    999      999999999999999999


Q ss_pred             CCccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcCc
Q 005538          556 SERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW  626 (691)
Q Consensus       556 sEppR~Y~PrnP~~tP~cYpq~ppP~L~np~lfqKiKi~kFseETLFYIFY~~PgD~~QllAA~EL~~RgW  626 (691)
                      .+|++..   -.+.+|.||+..+++.. .      .|+..|++||||||||.+++|.+|..||.||.+|+|
T Consensus       252 ~~P~~~~---~~~~lp~~y~~v~~~~~-~------~~~~~~~dE~lff~fyt~~~d~~Q~~aa~el~~r~w  312 (312)
T KOG2151|consen  252 EVPTSQE---ASFNLPNCYLNVNPKLQ-F------SKIDQFQDETLFYIFYTFPGDVMQELAAAELLKRNW  312 (312)
T ss_pred             cCCcccc---hhhhcchhhhccCCccc-h------HHHhhhcccceeeeeccCCcchhhhhHHHHhhccCC
Confidence            9999832   24789999998544331 1      236669999999999999999999999999999999

>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.16  E-value=1.9e-11  Score=127.79  Aligned_cols=133  Identities=28%  Similarity=0.555  Sum_probs=107.1

Q ss_pred             ccccCCCccccccccccccccchhh-HHHHhhcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhh---hcc
Q 005538          518 AIGDSLSGATVSSGGMHDQMYNMQM-LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER---LSL  593 (691)
Q Consensus       518 AiG~DLT~~~~tLG~m~dq~LNLns-lE~ly~tFpsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~L~np~lfqK---iKi  593 (691)
                      ++|.||+    +||      ++++. .-.+|.+|..||++++.+.-   ....+|.||...+.       ++.+   ..+
T Consensus        37 ~~~~d~~----~lg------~~~n~~~~~~~~~f~g~~~s~~l~~l---~~~~~P~~~~~~~~-------~~~~~~~~~~   96 (312)
T KOG2151|consen   37 ALGYDLT----TLG------LNLNLSERKLLMNFAGPWASEPLRHL---LDTKVPEEYMTHRH-------LRSKLPSLRL   96 (312)
T ss_pred             eeccchh----ccC------cccccccccccccccCcCCCcccccc---ccccCccccccchh-------hhhcCCcccc
Confidence            8999999    999      55542 23688889999999998843   34578999984322       2222   225


Q ss_pred             CCCCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeeecc--cCCccCCCcceeeeEEEeccccCccccccCcc
Q 005538          594 DSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH--EEPKVANDEFEQGTYVYFDFHIANDDLQHGWC  671 (691)
Q Consensus       594 ~kFseETLFYIFY~~PgD~~QllAA~EL~~RgWRYHkk~k~Wf~R~--~ePkv~Td~yErGsYiyFD~e~~~d~~~~~W~  671 (691)
                      +++...-|||+||++|        |.||..|.||||++.+.|+.+.  +.+...++.++.|.|..||..        .|+
T Consensus        97 ~kv~~~~l~~~~~~~P--------a~e~~~r~~~~~~~~~~~l~~s~yg~~~~~~~~~~~g~~~~~~q~--------s~~  160 (312)
T KOG2151|consen   97 NKVGERVLFYLFYNLP--------AGELQAREWRFHKSEQVWLTRSQYGGVKELPGNYMKGHFNVFDQM--------SWR  160 (312)
T ss_pred             cccccccceeeeccCC--------CcccccccccccccccccccccccCCccccccchhhchhccccch--------hhh
Confidence            6799999999999999        9999999999999999999997  356667789999999999984        786


Q ss_pred             eeecCCeEEechhhhh
Q 005538          672 QRIKTEFTFEYNYLED  687 (691)
Q Consensus       672 qr~K~nFtfeY~~LE~  687 (691)
                       ++-++-.++|..+|.
T Consensus       161 -~~~ke~~l~~~~~~~  175 (312)
T KOG2151|consen  161 -KIPKELKLAYSDLED  175 (312)
T ss_pred             -hcccchhhccccccc
Confidence             667788888888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	691
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 5e-07
 Identities = 72/528 (13%), Positives = 144/528 (27%), Gaps = 125/528 (23%)

Query: 231 VSDVAKRNILGAEER---LGSSGMVQSLVSPLSNRMILSQAAKGNDGT----GSIDSNNA 283
           V D   ++IL  EE    + S   V         R+  +  +K  +        +   N 
Sbjct: 38  VQD-MPKSILSKEEIDHIIMSKDAVSGT-----LRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 284 GETV-AMAGRVFTPSMGMQW--RTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQ 340
              +  +      PSM  +      +   N N+   F            K  Q L +++ 
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKYNVSRLQPYLKLRQALLELRP 149

Query: 341 QGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQ 400
             +  + G+ LG  K                 + ++    L   VQ             +
Sbjct: 150 AKNVLIDGV-LGSGK-----------------TWVALDVCLSYKVQ------------CK 179

Query: 401 QPNPIH-----QQSSQQTLMSGGQK-DADVSHLKVEEPQQPQNLPEESTPESA------- 447
               I        +S +T++   QK    +            N+       S        
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRL 237

Query: 448 -SSPGLGKNLIHEDDLKAPYAIDS--------STGVSASLTEPAQVVRDTDLSPGQPLQS 498
             S      L+   +++   A ++         T     +T+       T +S      +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 499 SQPSGGLGVIGR---RSVSDL---------GAIGDSLSGATVSSGGMHDQMYNMQMLE-- 544
             P     ++ +       DL           +  S+   ++  G      +     +  
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKL 355

Query: 545 ----SAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 600
                +   + +P +  R   +     +V PPS      P +     W  +         
Sbjct: 356 TTIIESSLNVLEPAE-YRKM-F--DRLSVFPPS---AHIPTILLSLIWFDVIKSDVMVVV 408

Query: 601 LFFAFY------YQQNTYQ---QYLAAKELKKQSWRYHRK----YNTW--FQRHEEPKVA 645
                Y       +++T      YL  K   +  +  HR     YN    F   +     
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 646 NDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFT---FEYNYLEDELI 690
            D++    Y +   H+ N +          T F     ++ +LE ++ 
Sbjct: 469 LDQY---FYSHIGHHLKNIEHPERM-----TLFRMVFLDFRFLEQKIR 508

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 3e-06
 Identities = 59/445 (13%), Positives = 121/445 (27%), Gaps = 108/445 (24%)

Query: 311 QNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNS 370
           + E  Q    T +  +QR++ L    QV  + + + L       + +   +  LL+   +
Sbjct: 99  KTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRL-------QPYLKLRQALLELRPA 150

Query: 371 QGSSISAQAGLG---LGVQAPGMNSVTSASLQQQ-PNPIH-----QQSSQQTLMSGGQK- 420
           +   I    G G   + +         S  +Q +    I        +S +T++   QK 
Sbjct: 151 KNVLIDGVLGSGKTWVALDV-----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 421 DADVSHLKVEEPQQPQNLPEESTPESA--------SSPGLGKNLIHEDDLKAPYAIDS-- 470
              +            N+       S          S      L+   +++   A ++  
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 471 ------STGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGR---RSVSDL----- 516
                  T     +T+       T +S      +  P     ++ +       DL     
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 517 ----GAIGDSLSGATVSSGGMHDQMYNMQMLE------SAFYKLPQPKDSERARSYIPRH 566
                 +  S+   ++  G      +     +       +   + +P +  R   +    
Sbjct: 324 TTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKM-F--DR 377

Query: 567 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFY------YQQNTYQ---QYLA 617
            +V PPS      P +     W  +              Y       +++T      YL 
Sbjct: 378 LSVFPPS---AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 618 AKELKKQSWRYHRK----YNT-----------------WFQ---RHEEPKVANDEFEQGT 653
            K   +  +  HR     YN                  ++     H +     +      
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 654 YVYFDFH-----IANDDLQHGWCQR 673
            V+ DF      I +D     W   
Sbjct: 495 MVFLDFRFLEQKIRHDST--AWNAS 517

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00