Citrus Sinensis ID: 005538


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
cHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHcccccccccccEEEEEEcccccHHHHHHHHHHHHcccEEEEccEEEEcccccccccccccEEEEEEEEccccccccccccccEEcccccEEEccccHHHccc
ccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccHHHcccEEEEEEEEccccccHcHHHHHcccccEEEEEEccccccc
MKLELILRLldndelspeqvNDVKDLLEDYVERnqddfeefsdvdelyhllpldkvesledlvtigppglVKATVISTHQQVTSVqeqgedtasqdsnsdvaartppakssgvgstastpavgpatpisinvpaqtlsnasntspvlpgsssvrgvfdntgpisssppvnltsstkeedvgnfpgrrsspsltdvrvmgrgglssqpsssiplssatavpsngnlgavplvsdVAKRNILGAeerlgssgmvqsLVSPLSNRMILSqaakgndgtgsidsnnagetvamagrvftpsmgmqwrtgnsfqnqnepgqfrgrteiapdQREKFLQRLQQVQQQGHsnllgmplggnkqfssqqnpllqqfnsqgssisaqaglglgvqapgmnsvtsaslqqqpnpihqqssqqtlmsggqkdadvshlkveepqqpqnlpeestpesasspglgknliheddlkapyaidsstgvsasltepaqvvrdtdlspgqplqssqpsgglgvigrrsvsdlgaigdslsgatvssggmhdqMYNMQMLESAfyklpqpkdserarsyiprhpavtppsypqvqapivsnpafwerlsldsygtdTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvandefeqgtyvyfdfhianddlqhgwcQRIKTEFTFEynyledeliv
MKLELILRLldndelspeqvnDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEqgedtasqdsnsdvaartppakssgvgstastpaVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNtgpisssppvnltsstkeedvgnfpgrrsspsltdvRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGaeerlgssgmVQSLVSPLSNRMILSQAAkgndgtgsidsnnagETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPqqpqnlpeestpesaSSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgvIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGlssqpsssiplssATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFlqrlqqvqqqGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVeepqqpqnlpeestpesasspGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
*****ILRLL************VKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVIST******************************************************************************************************************************************************PLVSDV******************************************************************************************************************************************************************************************************************************************************************************************************************************************************VQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE***
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVE********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQ**************GTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI*
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVIST******************************************AVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS****************FPGRRSSPSLTDVRVMGR*****************AVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV******************************VSHLKV**********************LGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDT****************LGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPP**VK*********************************************************************************************************************P*LTDV**MGRG*L***********************************************MVQS***PLSNRMILSQ******************************************************EIAPDQREKFLQRLQQVQQQGHSNLLGM************NP***************************************************************************************************************************************************R*VSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED*L**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query691 2.2.26 [Sep-21-2011]
Q8K0V4751 CCR4-NOT transcription co yes no 0.202 0.186 0.542 1e-43
O75175753 CCR4-NOT transcription co yes no 0.202 0.185 0.542 2e-43
O13870640 General negative regulato yes no 0.232 0.251 0.416 1e-33
Q52JK6603 Probable NOT transcriptio N/A no 0.270 0.310 0.268 5e-11
Q9NZN8540 CCR4-NOT transcription co no no 0.163 0.209 0.310 1e-10
Q8C5L3540 CCR4-NOT transcription co no no 0.163 0.209 0.310 1e-10
Q9FPW4614 Probable NOT transcriptio no no 0.099 0.112 0.376 6e-08
P06100191 General negative regulato yes no 0.182 0.659 0.329 7e-07
P87240306 General negative regulato no no 0.144 0.326 0.3 2e-06
Q94547585 Regulator of gene activit no no 0.083 0.099 0.390 4e-05
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1 Back     alignment and function desciption
 Score =  178 bits (451), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)

Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
           +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665

Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
              T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722

Query: 655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
           +YFD+          W QR K  FTFEY YLED
Sbjct: 723 IYFDY--------EKWGQRKKEGFTFEYRYLED 747




The CCR4-NOT complex functions as general transcription regulation complex.
Mus musculus (taxid: 10090)
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1 Back     alignment and function description
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2 Back     alignment and function description
>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1 Back     alignment and function description
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=2 SV=2 Back     alignment and function description
>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2 Back     alignment and function description
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC36 PE=1 SV=1 Back     alignment and function description
>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not2 PE=1 SV=2 Back     alignment and function description
>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
297739742 897 unnamed protein product [Vitis vinifera] 0.995 0.767 0.739 0.0
255568948 889 conserved hypothetical protein [Ricinus 0.984 0.764 0.711 0.0
359481840 888 PREDICTED: uncharacterized protein LOC10 0.986 0.768 0.730 0.0
224125888 886 predicted protein [Populus trichocarpa] 0.979 0.764 0.713 0.0
356559538 892 PREDICTED: uncharacterized protein LOC10 0.991 0.767 0.641 0.0
356560386 884 PREDICTED: uncharacterized protein LOC10 0.972 0.760 0.657 0.0
224144772 895 predicted protein [Populus trichocarpa] 0.984 0.759 0.673 0.0
449446768 900 PREDICTED: uncharacterized protein LOC10 0.995 0.764 0.642 0.0
356571684 882 PREDICTED: uncharacterized protein LOC10 0.969 0.759 0.650 0.0
357508635 901 CCR4-NOT transcription complex subunit [ 0.975 0.748 0.622 0.0
>gi|297739742|emb|CBI29924.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/718 (73%), Positives = 602/718 (83%), Gaps = 30/718 (4%)

Query: 1   MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLE 60
           MKLELILRLLDNDELSPEQVNDVKD L+DYVERNQ+DFEEFSDVD+LY+ LPLDKVESLE
Sbjct: 183 MKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDDLYNSLPLDKVESLE 242

Query: 61  DLVTIGPPGLVK-----------------ATVISTHQQVTSVQEQGEDTASQDSNSDVAA 103
           DLVTIG PGLVK                 ATV S  QQ TS+QEQ E+TASQDSNS++  
Sbjct: 243 DLVTIGAPGLVKGAPALSLKNSLTPTQIPATVTSPLQQSTSIQEQSEETASQDSNSEIGP 302

Query: 104 RTPPAKSSGVGSTAS-TPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGP 162
           RTPPAK+S +GS+AS TP    ATPI +NV A  LS AS    +LP S+SVRGV +N G 
Sbjct: 303 RTPPAKNSVIGSSASSTPTGSHATPIPLNVSAHNLS-ASPAPTILPSSTSVRGVLENAGT 361

Query: 163 ISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD---VRVMGRGGLSSQPSSSIPLSSATAV 219
             SSP VN++SS KEE++ +FPGRRSSP+L +   VR +GRG  SSQPS+S+PLSS   +
Sbjct: 362 AISSP-VNVSSSAKEEEIASFPGRRSSPALVETGLVRGIGRGVPSSQPSTSVPLSSGITI 420

Query: 220 PSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSID 279
           PSNG LGAVP  +D++KR+ LGA+ERLG  GMVQ LVSPLSNRMIL Q AK NDGTG  D
Sbjct: 421 PSNGGLGAVPSANDMSKRSTLGADERLGGGGMVQPLVSPLSNRMILPQTAKTNDGTGLAD 480

Query: 280 SNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQ 337
           S++ GE   +AGRVF+PS+  GMQWR G+SFQNQNE GQFRGRTEI  DQ+EKFLQRLQQ
Sbjct: 481 SSSVGEAAVIAGRVFSPSVVPGMQWRPGSSFQNQNESGQFRGRTEITLDQKEKFLQRLQQ 540

Query: 338 VQQQGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV 393
           VQQQ  S +LGMP   GGN KQFS+QQ NPLLQQFNSQ SS+S Q GLG+GVQAPG+N+V
Sbjct: 541 VQQQTQSTILGMPPLSGGNHKQFSAQQQNPLLQQFNSQSSSVSPQVGLGVGVQAPGLNTV 600

Query: 394 TSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLG 453
           TSA++QQQP  IHQQS+QQ L+S G KDADV H+K E+ QQ QN+ ++ST ESA S  LG
Sbjct: 601 TSAAIQQQPGSIHQQSNQQALLSTGPKDADVGHVKAEDQQQQQNVSDDSTMESAPS-SLG 659

Query: 454 KNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSV 513
           KNL++EDDLKAPYA+D+S GVS SLTEP+QV RDTDLSPGQP+QS+QPSG LGVIGRRS+
Sbjct: 660 KNLMNEDDLKAPYAMDTSAGVSGSLTEPSQVPRDTDLSPGQPVQSNQPSGSLGVIGRRSI 719

Query: 514 SDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPS 573
           SDLGAIGD+LSG+ V+SGGMHDQ+YN+QMLE+AFYKLPQPKDSERAR+Y PRHPAVTPPS
Sbjct: 720 SDLGAIGDTLSGSAVNSGGMHDQLYNLQMLEAAFYKLPQPKDSERARNYTPRHPAVTPPS 779

Query: 574 YPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYN 633
           YPQVQAPIV+NPAFWERL LD++GTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYN
Sbjct: 780 YPQVQAPIVNNPAFWERLGLDTFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYN 839

Query: 634 TWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 691
           TWFQRHEEPKVA DEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Sbjct: 840 TWFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 897




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568948|ref|XP_002525444.1| conserved hypothetical protein [Ricinus communis] gi|223535257|gb|EEF36934.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359481840|ref|XP_003632676.1| PREDICTED: uncharacterized protein LOC100253711 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224125888|ref|XP_002319700.1| predicted protein [Populus trichocarpa] gi|222858076|gb|EEE95623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356559538|ref|XP_003548056.1| PREDICTED: uncharacterized protein LOC100819202 [Glycine max] Back     alignment and taxonomy information
>gi|356560386|ref|XP_003548473.1| PREDICTED: uncharacterized protein LOC100783415 [Glycine max] Back     alignment and taxonomy information
>gi|224144772|ref|XP_002325409.1| predicted protein [Populus trichocarpa] gi|222862284|gb|EEE99790.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446768|ref|XP_004141143.1| PREDICTED: uncharacterized protein LOC101206210 [Cucumis sativus] gi|449509538|ref|XP_004163617.1| PREDICTED: uncharacterized LOC101206210 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356571684|ref|XP_003554004.1| PREDICTED: uncharacterized protein LOC100785965 [Glycine max] Back     alignment and taxonomy information
>gi|357508635|ref|XP_003624606.1| CCR4-NOT transcription complex subunit [Medicago truncatula] gi|124365585|gb|ABN09819.1| Not CCR4-Not complex component, N-terminal; tRNA-binding arm [Medicago truncatula] gi|355499621|gb|AES80824.1| CCR4-NOT transcription complex subunit [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
TAIR|locus:2172389845 AT5G18230 [Arabidopsis thalian 0.552 0.452 0.506 2.8e-165
FB|FBgn0033029844 l(2)NC136 "lethal (2) NC136" [ 0.201 0.164 0.549 1.3e-48
UNIPROTKB|F6XXD6753 CNOT3 "Uncharacterized protein 0.202 0.185 0.542 3e-48
DICTYBASE|DDB_G0272056866 DDB_G0272056 "putative CCR4-NO 0.208 0.166 0.528 1e-47
UNIPROTKB|O75175753 CNOT3 "CCR4-NOT transcription 0.202 0.185 0.542 1.6e-47
MGI|MGI:2385261751 Cnot3 "CCR4-NOT transcription 0.202 0.186 0.542 8.3e-47
UNIPROTKB|E2R344710 CNOT3 "Uncharacterized protein 0.201 0.195 0.535 2.3e-46
UNIPROTKB|E1BCS1744 CNOT3 "Uncharacterized protein 0.202 0.188 0.542 2.4e-46
RGD|1304771751 Cnot3 "CCR4-NOT transcription 0.202 0.186 0.542 2.8e-46
ZFIN|ZDB-GENE-040927-6901 cnot3a "CCR4-NOT transcription 0.202 0.155 0.522 2.7e-42
TAIR|locus:2172389 AT5G18230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 855 (306.0 bits), Expect = 2.8e-165, Sum P(2) = 2.8e-165
 Identities = 218/430 (50%), Positives = 268/430 (62%)

Query:     1 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLE 60
             +KLELILRLLDNDELSPEQVNDVKD L+DYVERNQDDF+EFSDVDELY  LPLD+VE LE
Sbjct:   185 IKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEVEGLE 244

Query:    61 DLVTIGP-----PGLVKATVISTHQQVTSV------QEQGEDTASQDSNSDVAARTPPAK 109
             DLVT GP     P  +K+++ ++  QV S+      QE+ EDT+  DS++++  +TPP K
Sbjct:   245 DLVTAGPLVKGTPLSMKSSLAASASQVRSISLPTHHQEKTEDTSLPDSSAEMVPKTPPPK 304

Query:   110 S-SGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPP 168
             + +G+ S  STPA G   P S+NVPA    N SNTS  L  S   +   ++ G +S   P
Sbjct:   305 NGAGLHSAPSTPAGG--RP-SLNVPA---GNVSNTSVTLSTSIPTQTSIESMGSLS---P 355

Query:   169 VNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAV 228
             V    + KEED    P R+   S+ D  + G G               + +P+NG+  + 
Sbjct:   356 V----AAKEEDATTLPSRKPPSSVADTPLRGIG-RVGIPNQPQPSQPPSPIPANGSRISA 410

Query:   229 PLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVA 288
                ++VAKRNI+G E        VQ L SPLS +M+L   AKGNDGT S DSN  G+  A
Sbjct:   411 TSAAEVAKRNIMGVESN------VQPLTSPLS-KMVLPPTAKGNDGTAS-DSN-PGDVAA 461

Query:   289 MAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNL 346
               GR F+PS+  G QWR G+ FQ+QNE    RGRTEIAPDQREKF          GH NL
Sbjct:   462 SIGRAFSPSIVSGSQWRPGSPFQSQNET--VRGRTEIAPDQREKFLQRLQQVQQ-GHGNL 518

Query:   347 LGMPL--GGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP 402
             LG+P   GGN KQFSSQQ NPLLQQ     SSIS    LG+GVQAPG N ++SASLQQQ 
Sbjct:   519 LGIPSLSGGNEKQFSSQQQNPLLQQ----SSSISPHGSLGIGVQAPGFNVMSSASLQQQS 574

Query:   403 NPIHQQSSQQ 412
             N + QQ  QQ
Sbjct:   575 NAMSQQLGQQ 584


GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS
FB|FBgn0033029 l(2)NC136 "lethal (2) NC136" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F6XXD6 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272056 DDB_G0272056 "putative CCR4-NOT complex subunit 3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|O75175 CNOT3 "CCR4-NOT transcription complex subunit 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2385261 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R344 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCS1 CNOT3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1304771 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040927-6 cnot3a "CCR4-NOT transcription complex, subunit 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
pfam04153131 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family 1e-57
COG5665548 COG5665, NOT5, CCR4-NOT transcriptional regulation 5e-33
COG5601172 COG5601, CDC36, General negative regulator of tran 7e-16
pfam04065233 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not 2e-11
COG5665548 COG5665, NOT5, CCR4-NOT transcriptional regulation 2e-06
>gnl|CDD|217931 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family Back     alignment and domain information
 Score =  191 bits (486), Expect = 1e-57
 Identities = 66/146 (45%), Positives = 84/146 (57%), Gaps = 17/146 (11%)

Query: 543 LESAFYKLPQPKDS-ERARSY-IPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 600
           L  +F   P P D+ ER   Y IP     TP SYPQ   P   +P+ +++        +T
Sbjct: 1   LHPSFASPPSPSDARERPPQYDIPECYLNTPSSYPQNPPP--LSPSKFQKFD-----DET 53

Query: 601 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFH 660
           LF+ FYY     QQYLAAKELK + WRYH+KY TWF RHEEPKV  DE+E+G+Y+YFD  
Sbjct: 54  LFYIFYYMPGDLQQYLAAKELKNRGWRYHKKYQTWFTRHEEPKVITDEYERGSYIYFDPE 113

Query: 661 IANDDLQHGWCQRIKTEFTFEYNYLE 686
                    W +R K  FT +Y+ LE
Sbjct: 114 S--------WKKRRKENFTLDYSDLE 131


NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5. Length = 131

>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>gnl|CDD|227888 COG5601, CDC36, General negative regulator of transcription subunit [Transcription] Back     alignment and domain information
>gnl|CDD|217869 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex component Back     alignment and domain information
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 691
KOG2150575 consensus CCR4-NOT transcriptional regulation comp 100.0
COG5665548 NOT5 CCR4-NOT transcriptional regulation complex, 100.0
PF04153134 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR 100.0
COG5601172 CDC36 General negative regulator of transcription 99.97
KOG2151312 consensus Predicted transcriptional regulator [Tra 99.54
KOG2151 312 consensus Predicted transcriptional regulator [Tra 99.16
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
Probab=100.00  E-value=2.7e-52  Score=452.28  Aligned_cols=271  Identities=38%  Similarity=0.595  Sum_probs=192.6

Q ss_pred             cccccceeccCCCccccccccccCCCCcCcCcccceecccCC--------------CCcccCcccccCCCCCCCCCCCCC
Q 005538          378 QAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQ--------------KDADVSHLKVEEPQQPQNLPEEST  443 (691)
Q Consensus       378 q~~~~~~~q~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~d~~  443 (691)
                      |++.++|+++++++..++|++...-|++|+.-.|...++...              +.+-+++.-.-..|-..+.|+++.
T Consensus       290 ~~~~~~~~~~~s~~A~aaA~~~~~~~s~~~~~qq~~~~~s~~~P~~~~p~~~~~~~~~st~~~p~~p~~q~~~~~P~~s~  369 (575)
T KOG2150|consen  290 HNGPPIGIDASSSAAPSGAVLAKGSNGQHQSPQQLRIPLSMPPPHSPTPSLKRIQHKVSTLDGPRTPPEQSEENTPLSSA  369 (575)
T ss_pred             cCCCccccCCCccccchhhhcccccccCCCccccccccCCCCCCCCCCccccchhhccccccCCCCCcccccccChhhhc
Confidence            888889999999999999999998888888777776542100              111111111000111122333222


Q ss_pred             CcccCCCCCCCCccccccCCCcccccCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccccccCCCCccccccCC
Q 005538          444 PESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSL  523 (691)
Q Consensus       444 ~e~~~~~~~~~~~~~~d~~~~~~~~d~p~~~~~s~~e~~Q~~Rd~~l~~~Q~~qs~~~~GLLGvI~RmsdpDL~AiG~DL  523 (691)
                      .-.+..     .            --.|.|++-...+..++.-..+..+..+.+++..+--.+...+|...-||+.    
T Consensus       370 k~~~~~-----s------------~~~~~~vp~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~----  428 (575)
T KOG2150|consen  370 KLQASK-----S------------ESPPKGVPELEEEAAASTLSPDSSEPASANTPLSSKEQHSPFELGLSPLGVQ----  428 (575)
T ss_pred             hhccCc-----c------------cCCCCCCCccccccccCCCCCCccccccccCCCCccccccchhhcccccccc----
Confidence            211110     0            0022333333333322222222222222222222222222222222222222    


Q ss_pred             CccccccccccccccchhhHHHHhhcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEE
Q 005538          524 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFF  603 (691)
Q Consensus       524 T~~~~tLG~m~dq~LNLnslE~ly~tFpsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~L~np~lfqKiKi~kFseETLFY  603 (691)
                            .++++++...+.++|.+|..++.|.|+|.++.|.|++|+.+|.+|++++++.+++..+|+|     |+.|||||
T Consensus       429 ------~~~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dTLFf  497 (575)
T KOG2150|consen  429 ------SEITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDTLFF  497 (575)
T ss_pred             ------ccccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccceee
Confidence                  2356999999999999999999999999999999999999999999999999999999999     99999999


Q ss_pred             EeecCCCcHHHHHHHHHHhhcCceeecccceeeecccCCccCCCcceeeeEEEeccccCccccccCcceeecCCeEEech
Q 005538          604 AFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYN  683 (691)
Q Consensus       604 IFY~~PgD~~QllAA~EL~~RgWRYHkk~k~Wf~R~~ePkv~Td~yErGsYiyFD~e~~~d~~~~~W~qr~K~nFtfeY~  683 (691)
                      ||||++|+++|++||+||++|+||||++|.+||+|+.||+.+|+.||+|+|+|||+.        .||+|.|.+|+|+|.
T Consensus       498 iFY~~qgt~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~~--------~W~qrkK~dFtfeY~  569 (575)
T KOG2150|consen  498 IFYYQQGTYEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDYK--------DWSQRKKIDFTFEYQ  569 (575)
T ss_pred             EEeeecchHHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEehh--------Hhhhhhccceeeehh
Confidence            999999999999999999999999999999999999999999999999999999994        899999999999999


Q ss_pred             hhhhh
Q 005538          684 YLEDE  688 (691)
Q Consensus       684 ~LE~r  688 (691)
                      |||+.
T Consensus       570 yLE~~  574 (575)
T KOG2150|consen  570 YLEDS  574 (575)
T ss_pred             hccCC
Confidence            99985



>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes Back     alignment and domain information
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription] Back     alignment and domain information
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.2 bits (124), Expect = 5e-07
 Identities = 72/528 (13%), Positives = 144/528 (27%), Gaps = 125/528 (23%)

Query: 231 VSDVAKRNILGAEER---LGSSGMVQSLVSPLSNRMILSQAAKGNDGT----GSIDSNNA 283
           V D   ++IL  EE    + S   V         R+  +  +K  +        +   N 
Sbjct: 38  VQD-MPKSILSKEEIDHIIMSKDAVSGT-----LRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 284 GETV-AMAGRVFTPSMGMQW--RTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQ 340
              +  +      PSM  +      +   N N+   F            K  Q L +++ 
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKYNVSRLQPYLKLRQALLELRP 149

Query: 341 QGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQ 400
             +  + G+ LG  K                 + ++    L   VQ             +
Sbjct: 150 AKNVLIDGV-LGSGK-----------------TWVALDVCLSYKVQ------------CK 179

Query: 401 QPNPIH-----QQSSQQTLMSGGQK-DADVSHLKVEEPQQPQNLPEESTPESA------- 447
               I        +S +T++   QK    +            N+       S        
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRL 237

Query: 448 -SSPGLGKNLIHEDDLKAPYAIDS--------STGVSASLTEPAQVVRDTDLSPGQPLQS 498
             S      L+   +++   A ++         T     +T+       T +S      +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 499 SQPSGGLGVIGR---RSVSDL---------GAIGDSLSGATVSSGGMHDQMYNMQMLE-- 544
             P     ++ +       DL           +  S+   ++  G      +     +  
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKL 355

Query: 545 ----SAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 600
                +   + +P +  R   +     +V PPS      P +     W  +         
Sbjct: 356 TTIIESSLNVLEPAE-YRKM-F--DRLSVFPPS---AHIPTILLSLIWFDVIKSDVMVVV 408

Query: 601 LFFAFY------YQQNTYQ---QYLAAKELKKQSWRYHRK----YNTW--FQRHEEPKVA 645
                Y       +++T      YL  K   +  +  HR     YN    F   +     
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 646 NDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFT---FEYNYLEDELI 690
            D++    Y +   H+ N +          T F     ++ +LE ++ 
Sbjct: 469 LDQY---FYSHIGHHLKNIEHPERM-----TLFRMVFLDFRFLEQKIR 508


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00