Citrus Sinensis ID: 005566

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-

MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNNCYTRHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENFEELHLSLDESEPLPKEFVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFIDAAMTEESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDCSLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENARDIEFGHMDLEGNAHSGPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDSSFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCRSWRGDGLKVKADRFWMLLFKLGTFIQMILPLFILRNLDPFMTDVYSIIFLI

cccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHEEcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHcccccccHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccccccccEEcccccccccccccccccccHHHHcc

cccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccccEEEEcHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHEEEHEEHHcccccHcHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccHcHccccEEcccHHHHHHHHHHHHHccccccccHEHEEEEc

mggvpstprfadsrpqdTAEYLIATFvgeksfplASDFWQKLLElplslhwpshrvHQACEAFAQNNCYTRHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENFEELHLsldeseplpkefvldqniENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTqllsvpslgpkdvhpfidaAMTEESSLVCSVVRRLLLNyitrprisvnsssysifseenqpgvlQRVGSAAATIVLLPFNYlvssngegssnpltdcSLLVLLVLIHYHKcvendesitdrsddsatsdslakssthftvnpycnalenardiefghmdlegnahsgpvvrlpfaslFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSqdssfnasihkmilpsvpwykehllhqtsLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNkiadrrddkkgnlteqdsFAEDMSAELHIYTDFLRIVLEILNAILTyalprnpeVVYAILHReevfqpfkshprfNELLENIYTVLDFFnsrldaqrvdgEWSVEKVLQSIIINCrswrgdglkvKADRFWMLLFKLGTFIQMILPLfilrnldpfmtdvYSIIFLI

mggvpstprfadsrpqDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNNCYTRHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENFEELHLSLDESEPLPKEFVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFIDAAMTEESSLVCSVVRRLLLNyitrprisvnsssysiFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDCSLLVLLVLIHYHKCVEndesitdrsddSATSdslakssthftvnpYCNALENARDIEFGHMDLEGNAHSGPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDSSFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYnkiadrrddkkgNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIincrswrgdgLKVKADRFWMLLFKLGTFIQMILPLFILRNLDPFMTDVYSIIFLI

MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNNCYTRHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENFEELHLSLDESEPLPKEFVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFIDAAMTEEsslvcsvvrrlllNYITRPRIsvnsssysifsEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDCSllvllvlIHYHKCVENDEsitdrsddsatsdslaksstHFTVNPYCNALENARDIEFGHMDLEGNAHSGPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMlliillilSQDSSFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCRSWRGDGLKVKADRFWMLLFKLGTFIQMILPLFILRNLDPFMTDVYSIIFLI

******************AEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNNCYTRHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENFEELHL********PKEFVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFIDAAMTEESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNG****NPLTDCSLLVLLVLIHYHKCVE***********************HFTVNPYCNALENARDIEFGHMDLEGNAHSGPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDSSFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNKI*********************SAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCRSWRGDGLKVKADRFWMLLFKLGTFIQMILPLFILRNLDPFMTDVYSIIFL*

********************YLIATFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNNCYTRHLAKILIHLTWCLQE**********AIMKAINAVYISSVFLKYLIENAESENFEEL******************NIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFIDAAMTEESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDCSLLVLLVLIHYHK************************STHFTVNPYCNALENARDIEFGHMDL***************SLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDSSFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNK***********************AELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDF**********************II****************RFWMLLFKLGTFIQMILPLFILRNLDPFMTDVYSIIFLI

**************PQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNNCYTRHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENFEELHLSLDESEPLPKEFVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFIDAAMTEESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDCSLLVLLVLIHYHKCVENDES****************SSTHFTVNPYCNALENARDIEFGHMDLEGNAHSGPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDSSFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCRSWRGDGLKVKADRFWMLLFKLGTFIQMILPLFILRNLDPFMTDVYSIIFLI

**************PQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNNCYTRHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENFEELHLSLDES********LDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFIDAAMTEESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDCSLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENARDIEFG******NAHSGPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDSSFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNKIADRRDD**********FAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCRSWRGDGLKVKADRFWMLLFKLGTFIQMILPLFILRNLDPFMTDVYSIIFLI

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		691	2.2.26 [Sep-21-2011]
Q5ZLW3		669	Dymeclin OS=Gallus gallus	yes	no	0.846	0.874	0.310	3e-72
B4F766		674	Dymeclin OS=Rattus norveg	yes	no	0.863	0.885	0.307	2e-69
Q8CHY3		669	Dymeclin OS=Mus musculus	yes	no	0.866	0.895	0.303	7e-69
Q7RTS9		669	Dymeclin OS=Homo sapiens	yes	no	0.862	0.890	0.318	2e-68
Q6DCP6		669	Dymeclin OS=Xenopus laevi	N/A	no	0.872	0.901	0.302	4e-68
Q5RAW5		669	Dymeclin OS=Pongo abelii	yes	no	0.837	0.865	0.313	9e-68
Q28BM0		669	Dymeclin OS=Xenopus tropi	yes	no	0.855	0.883	0.303	2e-67
Q293C2		700	Dymeclin OS=Drosophila ps	yes	no	0.814	0.804	0.292	1e-63
Q7KNA0		699	Dymeclin OS=Drosophila me	yes	no	0.824	0.815	0.286	2e-63
B0G194		931	Dymeclin OS=Dictyostelium	yes	no	0.622	0.461	0.300	2e-44

>sp\|Q5ZLW3\|DYM_CHICK Dymeclin OS=Gallus gallus GN=DYM PE=2 SV=1	Back alignment and function desciption

 Score =  273 bits (699), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 197/635 (31%), Positives = 333/635 (52%), Gaps = 50/635 (7%)

Query: 38  FWQKLLELPLS-------LHWPSHRVHQACEAFAQNNCYTRHLAKIL-IHLTWCLQECIS 89
           FW +LL    +       L          C++  + N  T +L  ++ + L+   +  IS
Sbjct: 32  FWNQLLSFSFTTPTNSADLKLLEEATVSVCKSLVEKNPRTGNLGSLIKVFLSRTKELKIS 91

Query: 90  SSGTASVAIMKAINAVYISSVFLKYLIENAESENFEELHLSLDESEPLPKEFVLDQNIEN 149
           +     + I +A NA++I    LK  I     E  + LH + ++  P       +  IE 
Sbjct: 92  AECQNHLFIWQAHNALFIICCLLKVFISRMSEEELQ-LHFTYEDKTPGSYGTECEDLIEE 150

Query: 150 LV--MHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFIDAAMT 207
           L+  +  ++  I L+D+   TY++  E +  ++V +S QL     L    +H ++     
Sbjct: 151 LLCCLIQLIVEIPLLDI---TYSISLEAVTTLIVFLSCQLFHKEILRESLIHKYLMRGRC 207

Query: 208 EESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYL 267
                   +V+ LL N+I + R S    S+    + +  G+L  + S  AT +   F   
Sbjct: 208 --LPYTSRLVKTLLYNFIRQER-SPPPGSHVFQQQTDGGGLLYGIASGVATGLWTVFT-- 262

Query: 268 VSSNGEGSSNPLTDCSLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNP 327
           +   G  ++  L  CS L              ++S+      +  +D+        T NP
Sbjct: 263 LGGVGSKATPQLDQCSPLA-------------NQSLLLLLVLANLTDAPD------TPNP 303

Query: 328 YCNALENARDIEFGHMDLEGNAHSGP-VVRLPFASLFDTLGMYLADETAVLLLYSLVQGN 386
           Y  A+ + ++ +    D    + S P V ++ F SL+  L      + A LLLY L+  N
Sbjct: 304 YRQAIMSFKNTQ----DSSAFSSSHPHVFQINFNSLYTALCEQQKSDQATLLLYMLLHQN 359

Query: 387 SGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDSSFNASIHKMIL 446
                YVL RTD++ L++PILE LY+  ++  + +YM LIILLIL++D  FN SIH++IL
Sbjct: 360 GNVRTYVLARTDIENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVIL 419

Query: 447 PSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSA 506
            ++ WY E +L + SLGSLL++++IRT++YN+++ RD YLHT CLA LANM+     L  
Sbjct: 420 KNITWYAERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQ 479

Query: 507 YASQRLVSLFYMLSRKYNKIADRRDDK-KGNLTEQDSFAEDMSAELHIYTDFLRIVLEIL 565
           YA+QR++SLF +LS+K+NK+ ++     +G+L   DS   D + +L++  + +R++LEI+
Sbjct: 480 YAAQRIISLFSLLSKKHNKVLEQATQSLRGSLDSNDSPLPDYAQDLNVIEEVIRMMLEII 539

Query: 566 NAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGE 625
           N+ LT +L  NP +VYA+L++ ++F+ F++HP F ++++NI  V+ FF+SRL+      E
Sbjct: 540 NSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVISFFSSRLE--HAGAE 597

Query: 626 WSVEKVLQSIIINCRSWRGDGLKVKADRFWMLLFK 660
            SVE+VL+ I     +   D L+    +F  L FK
Sbjct: 598 LSVERVLEIIKQGAVALPKDRLR----KFPELKFK 628

Gallus gallus (taxid: 9031)

>sp\|B4F766\|DYM_RAT Dymeclin OS=Rattus norvegicus GN=Dym PE=2 SV=1	Back alignment and function description

>sp\|Q8CHY3\|DYM_MOUSE Dymeclin OS=Mus musculus GN=Dym PE=2 SV=1	Back alignment and function description

>sp\|Q7RTS9\|DYM_HUMAN Dymeclin OS=Homo sapiens GN=DYM PE=1 SV=1	Back alignment and function description

>sp\|Q6DCP6\|DYM_XENLA Dymeclin OS=Xenopus laevis GN=dym PE=2 SV=1	Back alignment and function description

>sp\|Q5RAW5\|DYM_PONAB Dymeclin OS=Pongo abelii GN=DYM PE=2 SV=1	Back alignment and function description

>sp\|Q28BM0\|DYM_XENTR Dymeclin OS=Xenopus tropicalis GN=dym PE=2 SV=1	Back alignment and function description

>sp\|Q293C2\|DYM_DROPS Dymeclin OS=Drosophila pseudoobscura pseudoobscura GN=GA20914 PE=3 SV=1	Back alignment and function description

>sp\|Q7KNA0\|DYM_DROME Dymeclin OS=Drosophila melanogaster GN=CG8230 PE=1 SV=1	Back alignment and function description

>sp\|B0G194\|DYM_DICDI Dymeclin OS=Dictyostelium discoideum GN=dym PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		691
359477563		726	PREDICTED: dymeclin-like [Vitis vinifera	0.939	0.893	0.802	0.0
224111108		722	predicted protein [Populus trichocarpa]	0.933	0.893	0.777	0.0
22329321		732	uncharacterized protein [Arabidopsis tha	0.936	0.883	0.730	0.0
449432656		726	PREDICTED: dymeclin-like [Cucumis sativu	0.934	0.889	0.722	0.0
297843230		732	hypothetical protein ARALYDRAFT_470396 [	0.936	0.883	0.717	0.0
356575887		723	PREDICTED: dymeclin-like [Glycine max]	0.933	0.892	0.695	0.0
356535952		722	PREDICTED: dymeclin-like isoform 1 [Glyc	0.931	0.891	0.695	0.0
356535954		702	PREDICTED: dymeclin-like isoform 2 [Glyc	0.931	0.917	0.693	0.0
3142290		814	Contains similarity to gb\|Z69902 from C.	0.924	0.785	0.644	0.0
356537124		710	PREDICTED: dymeclin-like [Glycine max]	0.926	0.901	0.684	0.0

>gi\|359477563\|ref\|XP_002283373.2\| PREDICTED: dymeclin-like [Vitis vinifera] gi\|297737110\|emb\|CBI26311.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1050 bits (2715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/653 (80%), Positives = 568/653 (86%), Gaps = 4/653 (0%)

Query: 1   MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQAC 60
           MG VPSTPR++ +RP DTAEYLI TFVGEKSFPL SDFWQKLLELPLSL WPSHRV QAC
Sbjct: 1   MGTVPSTPRWSSARPVDTAEYLIGTFVGEKSFPLTSDFWQKLLELPLSLQWPSHRVRQAC 60

Query: 61  EAFAQNNCYTRHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAE 120
           E FAQNN YTRHLAKILIHL  CLQECIS+SG  S    KA+NAVYISSVFLKYLIENA+
Sbjct: 61  ELFAQNNYYTRHLAKILIHLGQCLQECISTSGVPSTVYTKAVNAVYISSVFLKYLIENAK 120

Query: 121 SENFEELHLSLDESEPLPKEFVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFML 180
           SEN EELHLSLDESE +   F  DQNIEN VMH VLSFI  +DV+P T+ LH ELLNFML
Sbjct: 121 SENIEELHLSLDESEVIQNNFPADQNIENFVMHGVLSFIGTLDVNPETHLLHHELLNFML 180

Query: 181 VAMSTQLLSVPSLGPKDVHPFIDAAMTEESSLVCSVVRRLLLNYITRPRISVNSSSYSIF 240
           + MSTQLLS PS GPKDV+PFIDAAM +ESSLV  VVRRLL+NYI RPRI +N  SYSIF
Sbjct: 181 IVMSTQLLSGPSPGPKDVNPFIDAAMAQESSLVGLVVRRLLINYINRPRIPLNDVSYSIF 240

Query: 241 SEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDCSLLVLLVLIHYHKCVEND 300
           SE +QPGVLQRVGSAAA  VLLPFNYLVSS GEG  +PL D SL VLL+LIHY KC+  D
Sbjct: 241 SEGSQPGVLQRVGSAAANFVLLPFNYLVSSGGEGPRSPLADSSLQVLLILIHYRKCILVD 300

Query: 301 ESITDRSDDSATSDSLAKSSTHFTVNPYCNALENARDIEFGHMDLEGNAHSGPVVRLPFA 360
           ESI DR    ATSDSL+K +T+F+ NPYC ALENARDIEF  +D+EGNAHSGP+VRLPFA
Sbjct: 301 ESIADRKSGGATSDSLSKENTYFSENPYCKALENARDIEFDRVDIEGNAHSGPLVRLPFA 360

Query: 361 SLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQ 420
           SLFDTLGM+LADETA+LLLYSLV GNS FLEYVLVRTDLDTLLMPILETLYNAS++T NQ
Sbjct: 361 SLFDTLGMFLADETAILLLYSLVHGNSDFLEYVLVRTDLDTLLMPILETLYNASRRTSNQ 420

Query: 421 IYMLLIILLILSQDSSFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSK 480
           IYMLLIILLILSQDSSFNASIHK+ILPSVPWYKE LLHQTSLGSL+VIILIRTVKYNLSK
Sbjct: 421 IYMLLIILLILSQDSSFNASIHKLILPSVPWYKERLLHQTSLGSLMVIILIRTVKYNLSK 480

Query: 481 LRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNKIADRRDDK----KGN 536
           LRDVYLHT CLATLANMAPH HRLSAYASQRLVSLF MLSRKYNK+A+  DDK    K N
Sbjct: 481 LRDVYLHTNCLATLANMAPHAHRLSAYASQRLVSLFDMLSRKYNKLAELMDDKMHIDKAN 540

Query: 537 LTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSH 596
             E DS AED+S ELHIYTDFLRIVLEILNAILTYALPRNPEVVYAI+HR+EVFQPFK+H
Sbjct: 541 SPEGDSIAEDVSTELHIYTDFLRIVLEILNAILTYALPRNPEVVYAIMHRQEVFQPFKNH 600

Query: 597 PRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCRSWRGDGLKV 649
           PRFNELLENIYTVLDFFNSR+DAQ ++G WSVEKVLQ IIINCRSWRG+G+K+
Sbjct: 601 PRFNELLENIYTVLDFFNSRMDAQGMNGGWSVEKVLQVIIINCRSWRGEGMKM 653

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224111108\|ref\|XP_002315750.1\| predicted protein [Populus trichocarpa] gi\|222864790\|gb\|EEF01921.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|22329321\|ref\|NP_171916.2\| uncharacterized protein [Arabidopsis thaliana] gi\|20268678\|gb\|AAM14043.1\| unknown protein [Arabidopsis thaliana] gi\|21689843\|gb\|AAM67565.1\| unknown protein [Arabidopsis thaliana] gi\|332189548\|gb\|AEE27669.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449432656\|ref\|XP_004134115.1\| PREDICTED: dymeclin-like [Cucumis sativus] gi\|449504142\|ref\|XP_004162264.1\| PREDICTED: dymeclin-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297843230\|ref\|XP_002889496.1\| hypothetical protein ARALYDRAFT_470396 [Arabidopsis lyrata subsp. lyrata] gi\|297335338\|gb\|EFH65755.1\| hypothetical protein ARALYDRAFT_470396 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356575887\|ref\|XP_003556068.1\| PREDICTED: dymeclin-like [Glycine max]	Back alignment and taxonomy information

>gi\|356535952\|ref\|XP_003536505.1\| PREDICTED: dymeclin-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356535954\|ref\|XP_003536506.1\| PREDICTED: dymeclin-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|3142290\|gb\|AAC16741.1\| Contains similarity to gb\|Z69902 from C. elegans [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356537124\|ref\|XP_003537080.1\| PREDICTED: dymeclin-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		691
TAIR\|locus:2020230		732	AT1G04200 "AT1G04200" [Arabido	0.936	0.883	0.675	9.9e-229
UNIPROTKB\|Q5ZLW3		669	DYM "Dymeclin" [Gallus gallus	0.442	0.457	0.394	1.6e-69
UNIPROTKB\|Q7RTS9		669	DYM "Dymeclin" [Homo sapiens (	0.441	0.455	0.382	5.3e-69
UNIPROTKB\|E1BY18		626	DYM "Dymeclin" [Gallus gallus	0.442	0.488	0.391	8.7e-69
RGD\|1309111		674	Dym "dymeclin" [Rattus norvegi	0.439	0.451	0.387	1.1e-68
UNIPROTKB\|Q293C2		700	GA20914 "Dymeclin" [Drosophila	0.464	0.458	0.392	1.2e-68
MGI\|MGI:1918480		669	Dym "dymeclin" [Mus musculus (	0.441	0.455	0.385	1.4e-68
UNIPROTKB\|E1BE17		669	DYM "Uncharacterized protein"	0.441	0.455	0.382	1.8e-68
UNIPROTKB\|Q5RAW5		669	DYM "Dymeclin" [Pongo abelii (	0.402	0.415	0.405	2.9e-68
FB\|FBgn0027607		699	CG8230 [Drosophila melanogaste	0.464	0.459	0.383	1.1e-67

TAIR\|locus:2020230 AT1G04200 "AT1G04200" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2207 (782.0 bits), Expect = 9.9e-229, P = 9.9e-229
 Identities = 443/656 (67%), Positives = 510/656 (77%)

Query:     1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQAC 60
             MGGVPSTPR         AEYLIATFVGEKSFPLASDFW KLLELPLS  WPS RV QAC
Sbjct:     1 MGGVPSTPRKTGGDDVSVAEYLIATFVGEKSFPLASDFWNKLLELPLSSRWPSDRVQQAC 60

Query:    61 EAFAQNNCYTRHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAE 120
             E FAQ+N YTRHLAK+LIHL+WCLQE + +S   S    KA+NA YISSVFLKYLIEN +
Sbjct:    61 ELFAQSNGYTRHLAKLLIHLSWCLQELLQASDDQSSLYKKAVNATYISSVFLKYLIENGK 120

Query:   121 SENFEELHLSLDESEPLPKEFVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFML 180
             S++ +ELHLSLDESEP+P  FV+DQ+I+N VMHSVLSFI   +VSP++Y LHQELLNFML
Sbjct:   121 SDSLQELHLSLDESEPVPHGFVMDQDIQNFVMHSVLSFIGSNEVSPNSYVLHQELLNFML 180

Query:   181 VAMSTQLLSVPSLGPKDVHPFIDAAMTEEXXXXXXXXXXXXXNYITRPRIXXXXXXXXXX 240
             V MSTQLLS PS GP D +PFIDAAMT+E             NYI+R R           
Sbjct:   181 VTMSTQLLSGPSHGPTDANPFIDAAMTQEKSLVSLVVRRLLLNYISRHRTPPNAKSYMYS 240

Query:   241 XEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDCSXXXXXXXIHYHKCVEND 300
               ++Q G+L+RVGSAAA++VLLP NYLVS++G GS NPL +CS       I+YHK + +D
Sbjct:   241 DGDSQ-GILERVGSAAASLVLLPLNYLVSNSG-GSKNPLAECSLHVLLILINYHKSIMSD 298

Query:   301 EXXXXXXXXXXXXXXXXXXXXHFTVNPYCNALENARDIEFGHMDLEGNAH-SGPVVRLPF 359
             E                      + N +  AL NARD+EF   D+EGNAH +GP VR+PF
Sbjct:   299 ESMTDKSDDSATSESVSKVHVFSSDNTFSKALANARDVEFDRSDVEGNAHPAGPHVRIPF 358

Query:   360 ASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTP- 418
             ASLFDTLGM+LADE AVLLLYSL+QGNS F EYVLVRTDLDTLLMPILETLYNASK+T  
Sbjct:   359 ASLFDTLGMFLADEGAVLLLYSLLQGNSDFKEYVLVRTDLDTLLMPILETLYNASKRTSS 418

Query:   419 NQIYMXXXXXXXXSQDSSFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNL 478
             NQIYM        SQDSSFN+SIHKMILPSVPWYKEHLLHQTSLGSL+VIILIRTV++NL
Sbjct:   419 NQIYMMLIVLLILSQDSSFNSSIHKMILPSVPWYKEHLLHQTSLGSLMVIILIRTVQHNL 478

Query:   479 SKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNKIADRRDDK----K 534
             SKLRDVYL TTCLATLANMAPH H LSAYASQRLVSLFYMLSRKYNK++D   DK    K
Sbjct:   479 SKLRDVYLQTTCLATLANMAPHAHHLSAYASQRLVSLFYMLSRKYNKLSDLTGDKLQSIK 538

Query:   535 GNLTEQD-SFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPF 593
              NL+ +D   +ED++AEL I+TDFLR+VL+ILNAILTYALPRNPE+VYAI+HR+EVFQPF
Sbjct:   539 INLSGEDVGVSEDLAAELQIFTDFLRLVLDILNAILTYALPRNPEIVYAIMHRQEVFQPF 598

Query:   594 KSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCRSWRGDGLKV 649
             K+HPRF+EL+ENIYTVLDFFNSR+D+QR D EWSV+KVLQ II NCRSWRG+G+K+
Sbjct:   599 KNHPRFHELVENIYTVLDFFNSRMDSQRSDREWSVQKVLQFIINNCRSWRGEGMKM 654

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

UNIPROTKB\|Q5ZLW3 DYM "Dymeclin" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7RTS9 DYM "Dymeclin" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BY18 DYM "Dymeclin" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1309111 Dym "dymeclin" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q293C2 GA20914 "Dymeclin" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]	Back alignment and assigned GO terms

MGI\|MGI:1918480 Dym "dymeclin" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BE17 DYM "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5RAW5 DYM "Dymeclin" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

FB\|FBgn0027607 CG8230 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28BM0	DYM_XENTR	No assigned EC number	0.3035	0.8552	0.8834	yes	no
Q8CHY3	DYM_MOUSE	No assigned EC number	0.3033	0.8668	0.8953	yes	no
Q5RAW5	DYM_PONAB	No assigned EC number	0.3131	0.8379	0.8654	yes	no
Q7RTS9	DYM_HUMAN	No assigned EC number	0.3186	0.8625	0.8908	yes	no
B4F766	DYM_RAT	No assigned EC number	0.3076	0.8639	0.8857	yes	no
Q5ZLW3	DYM_CHICK	No assigned EC number	0.3102	0.8465	0.8744	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		691
pfam09742		659	pfam09742, Dymeclin, Dyggve-Melchior-Clausen syndr	0.0
pfam12722		813	pfam12722, Hid1, High-temperature-induced dauer-fo	4e-08

>gnl\|CDD\|220375 pfam09742, Dymeclin, Dyggve-Melchior-Clausen syndrome protein	Back alignment and domain information

 Score =  538 bits (1389), Expect = 0.0
 Identities = 237/680 (34%), Positives = 343/680 (50%), Gaps = 79/680 (11%)

Query: 1   MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLASD-FWQKLLELPLSLHWPS------ 53
           MG   ST      R     E LI   VG    P   D FW +LL   + +   S      
Sbjct: 1   MGASISTESKLSFR-----EALIR-LVGTDPVPPDDDPFWDELLSFSILIPTSSSDIFTL 54

Query: 54  --HRVHQACEAFAQNNCYTRHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVF 111
               + +   +   NN  T +LA ++      L E   S         +AINA+ I    
Sbjct: 55  LDAALERILRSLFPNNLATGNLAALVRVFLRQLSELKISEDKQDS---QAINALRILRRI 111

Query: 112 LKYLIENAESENFEELHLSLDESEPLPK-------------------EFVLDQNIENLVM 152
           +KYLIE+           S D +  +                     +     + E+ + 
Sbjct: 112 IKYLIESGSESELLGFFWSTDPAGGVRPLATTLFEALTDLLFPAKGADLSTLSSFEDFLE 171

Query: 153 HSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFIDAAMTEESSL 212
             V   +    V+  TY +H E+L  +LV +S+QL   PS       PF  +  + E+S 
Sbjct: 172 ALV-GILVSPPVNDATYLIHLEILRLLLVLLSSQLYIDPSDESG--SPFYRSITSAENSH 228

Query: 213 VCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNG 272
              +   LL N++ R  +     S+ +FS+ +QPGVL  + S++++ ++  F     SN 
Sbjct: 229 AGPLFTSLLNNFLARDPVP-YPYSHLLFSDGSQPGVLFGIASSSSSSLVFTFGGGKVSNS 287

Query: 273 EGSSNPLTDCSLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNAL 332
           E S +PL + SL +LLVL+ +       +                        NP+  AL
Sbjct: 288 ESSRSPLANVSLQLLLVLLDHCPPESPKD------------------------NPFRLAL 323

Query: 333 ENARDIEFGHMDLEGNAHSGPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEY 392
               DIE        ++ SG    + F++L+D+L   L  +  +LLLY L+  NS FL Y
Sbjct: 324 FYLSDIER---SSSVSSLSGSENLIDFSALYDSLCKLLFHDELLLLLYKLLHRNSRFLSY 380

Query: 393 VLVRTDLDTLLMPILETLYNASKKT--PNQIYMLLIILLILSQDSSFNASIHKMILPSVP 450
           VL R+DLD L++PILE LY+A       + IYM LIILLILSQD +FN S+HK  + SVP
Sbjct: 381 VLSRSDLDNLIVPILELLYDAESDQSNSHHIYMALIILLILSQDRNFNRSLHKTYIKSVP 440

Query: 451 WYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQ 510
           WY E  L + SLGSLLV++LIRT++YN+ KLRD YLHT CLA LANM+P+   LS YA+Q
Sbjct: 441 WYTERSLFEISLGSLLVLVLIRTIQYNMKKLRDKYLHTNCLAILANMSPYFKNLSPYAAQ 500

Query: 511 RLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILT 570
           RLVSL  +LSRK+ K++   +D+    +E          +L +  + LR++LEILN+ILT
Sbjct: 501 RLVSLLELLSRKHFKLSSLINDRLSESSEFSD-------DLAVLEEVLRLLLEILNSILT 553

Query: 571 YALPRNPEVVYAILHREEVFQPFKS-HPRFNEL-LENIYTVLDFFNSRLDAQRVDGEWSV 628
           Y L  NPE+VYA+L + E+F+ F++ HP F EL L+NI  VL+FFNSR+++   D    V
Sbjct: 554 YQLDSNPELVYALLRKRELFEQFRNDHPAFQELPLQNIDRVLEFFNSRVESIGADIGSDV 613

Query: 629 EKVLQSIIINCRSWRGDGLK 648
            ++L+ I      W  D LK
Sbjct: 614 SEILEVIEKGTLVWPSDPLK 633

Dymeclin (Dyggve-Melchior-Clausen syndrome protein) contains a large number of leucine and isoleucine residues and a total of 17 repeated dileucine motifs. It is characteristically about 700 residues long and present in plants and animals. Mutations in the gene coding for this protein in humans give rise to the disorder Dyggve-Melchior-Clausen syndrome (DMC, MIM 223800) which is an autosomal-recessive disorder characterized by the association of a spondylo-epi-metaphyseal dysplasia and mental retardation. DYM transcripts are widely expressed throughout human development and Dymeclin is not an integral membrane protein of the ER, but rather a peripheral membrane protein dynamically associated with the Golgi apparatus. Length = 659

>gnl\|CDD\|221734 pfam12722, Hid1, High-temperature-induced dauer-formation protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		691
KOG2225		695	consensus Proteins containing regions of low-compl	100.0
PF09742		678	Dymeclin: Dyggve-Melchior-Clausen syndrome protein	100.0
PF12722		895	Hid1: High-temperature-induced dauer-formation pro	100.0
KOG2226		786	consensus Proteins containing regions of low-compl	100.0
PF08427		237	DUF1741: Domain of unknown function (DUF1741); Int	97.7
KOG4654		252	consensus Uncharacterized conserved protein [Funct	95.85

>KOG2225 consensus Proteins containing regions of low-complexity [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=1.6e-126  Score=1001.14  Aligned_cols=609  Identities=28%  Similarity=0.467  Sum_probs=531.7

Q ss_pred             CCCCCCcccccCCCCcchhHHHHHHhhCCccCCCCchhHHHhhcCCCCCCCCch---------hhHHHHHHHHHhcCCCc
Q 005566            1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSH---------RVHQACEAFAQNNCYTR   71 (691)
Q Consensus         1 MG~~~Sk~~~~~~~~~~~n~~l~~~Ls~~~~I~~~D~FW~qfws~p~s~~~p~d---------~l~~~~~~L~~nN~~t~   71 (691)
                      ||...||-.     ++.+|.|+ +||+|.++.+++|||||+++++  |+.-|.|         ++.+.||.++.||.+||
T Consensus         1 mg~~itk~~-----~l~~n~~l-kk~~g~~~~~d~d~fwn~ll~~--~l~~~d~~ed~i~les~ld~~~q~~~~n~~~tg   72 (695)
T KOG2225|consen    1 MGSVITKET-----VLQENIYL-KKLSGLEPVDDYDPFWNKLLSF--SLKFDDDDEDRIALESALDDHLQCLMYNTQTTG   72 (695)
T ss_pred             CCcccchhh-----hcchhHHH-HHhcCCCcCccccHHHHhhhhe--eeecCCCcHHHhhhHHHHHHHHHHHhcCCcccC
Confidence            999999976     88999999 9999988888888999999999  6565542         78888999999999999


Q ss_pred             cHHHHHHHHHHHHHHhHhcCCCCchH-HHHHHHHHHHHHHhhhheeecCChhhHHHhhcccCCC--------------CC
Q 005566           72 HLAKILIHLTWCLQECISSSGTASVA-IMKAINAVYISSVFLKYLIENAESENFEELHLSLDES--------------EP  136 (691)
Q Consensus        72 Nl~tLi~~l~~rL~~l~~~~~~~~~~-~~qalNclriLtriLpyl~E~~~~~~~~~~fw~~~~~--------------e~  136 (691)
                      ||+++|+.+.+|..|++.++++.+.. .||+.||++|+|.+.+|+-|.++|.++-+.|-....+              |+
T Consensus        73 nf~a~i~~fl~r~tel~t~~~~e~~~~~wqt~nal~ilr~i~r~l~q~~te~e~~~~f~~~~~s~~~ess~~~~~~~~~d  152 (695)
T KOG2225|consen   73 NFAAFIRLFLRRATELKTSEQCENKIYLWQTSNALLILRYIARFLTQRMTEKEFVRIFAKSHESTETESSSTSSSSDEED  152 (695)
T ss_pred             cHHHHHHHHHHHHHhhcchHhhhcceeehhhccHHHHHHHHHHHHHhhccHHHHHHHHHhCcchhhhhhhhhcccCCccc
Confidence            99999999999999999988765554 9999999999999999999999988753333211000              01


Q ss_pred             CCc------------C---cccchhhHHHHHHhhcccccccCCCchhhhHHHHHHHHHHHHhchhcCCCCCCCCCCCCch
Q 005566          137 LPK------------E---FVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPF  201 (691)
Q Consensus       137 ~~~------------~---f~~~~~ve~~lweagvg~~~svp~~~~t~~~h~EvlrlLLvllS~qLY~~~~~~~~~~~~~  201 (691)
                      +.+            .   ...+.+.|.+ -.++|.+++.+|++..||.+|+|++|||+|++|+|||+..   +.+.+..
T Consensus       153 ~~~~~~e~~~~~~a~~~~~iv~~~~~e~f-~~~lv~ili~i~v~e~t~~ih~eav~~l~tlLS~qLf~~~---~~~~SIv  228 (695)
T KOG2225|consen  153 DDEQKSENENNNGATKYIPIVFQNTAEEF-TYELVSILINISVNETTLAIHVEAVRCLLTLLSSQLFNES---IVNTSIV  228 (695)
T ss_pred             chhHHhhccccCCccccceEEecccHHHH-HHHHHHheEEeeccceeehhhHHHHHHHHHHHHHHHhhhc---cccceeE
Confidence            000            0   2346788888 6699999999999999999999999999999999999985   4457888


Q ss_pred             hHhhhccC-ccchHHHHHHHHHhhhcCCCCCCCCCcccccccCCCCcchhhccccccccccccccccccc----CCCCCC
Q 005566          202 IDAAMTEE-SSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSS----NGEGSS  276 (691)
Q Consensus       202 l~~~~~~~-~~~al~Ll~SLL~n~i~~~~~p~~~~~y~~~~d~~~~gi~~~~gs~~~~~~~lPy~~l~~~----~~~d~~  276 (691)
                      +++++.+. .+|+..|+++||.|+++++++|..     .++.+.+||+++|++++.|++|.+-...-+.+    ++.+-.
T Consensus       229 fr~~~~g~C~~ha~~L~ktLL~n~~r~~~~pH~-----~~q~s~~Gs~vfGlAss~~siftv~~~~gi~~~~aa~~peLs  303 (695)
T KOG2225|consen  229 FRFFIDGSCAKHAASLTKTLLLNYLRHNSEPHM-----TVQKSQEGSIVFGLASSMWSIFTVQMATGIDSAEAAKKPELS  303 (695)
T ss_pred             EEeeecCchHHHHHHHHHHHHHHHHHhcCCCcc-----cccCCCCCceeeehhhHHHHHHHhhhccCcchhhhccCCCCC
Confidence            88899864 789999999999999999998864     34566677899999999998777665333321    122345


Q ss_pred             chHHHHHHHHHHHHhhcCCCCCCCCCcccCCCCCCCcccccccCCCCCCChHHHHhhccccccccccccCCCCCCC-Ccc
Q 005566          277 NPLTDCSLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENARDIEFGHMDLEGNAHSG-PVV  355 (691)
Q Consensus       277 ~pL~~~slqlLlVLl~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~fr~~L~~~~D~~f~~~~~~~~~~~~-~~~  355 (691)
                      .||+++|+++||+|.+|++.                          ...||||+.|+.++|.|.    ...-|..| -.+
T Consensus       304 ~PLaNqSlLLlL~Lsnh~~a--------------------------~dsNpyr~tl~sf~n~qd----ss~~P~qg~vsF  353 (695)
T KOG2225|consen  304 LPLANQSLLLLLNLSNHQPA--------------------------NDSNPYRETLASFQNAQD----SSTLPTQGIVSF  353 (695)
T ss_pred             ccccchhHHHHHHHhcCCCc--------------------------ccCCHHHHHHHHhhcccc----cCCCCCCCceEE
Confidence            69999999999999998431                          145999999999999882    23334333 379


Q ss_pred             cccchhHHHHhccccCchhHHHHHHHHhhcCccchhhhhcccchhhhHHHHHHHHHhcccCCCCchHHHHHHHHHhcCCc
Q 005566          356 RLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDS  435 (691)
Q Consensus       356 ~i~f~~l~~~l~~~~~~e~~~lLLy~Ll~~N~~F~~~vl~~~d~~~lv~piL~~ly~~~~~~s~~v~m~l~ILLiLS~d~  435 (691)
                      +|+|+++|+++|.+.++|+.++|||.|||.|++||+||++|.|++++|+|||++||++++++||||||++|+|||||+|+
T Consensus       354 qIdfn~lYe~LC~~~t~dqatLLLY~LLh~Ns~fr~yvl~r~dlEnLVvPiL~iLy~a~~~NSHHvYmaLIvlLILsEDd  433 (695)
T KOG2225|consen  354 QIDFNGLYERLCATATQDQATLLLYMLLHANSGFRNYVLSRIDLENLVVPILRILYDATSNNSHHVYMALIVLLILSEDD  433 (695)
T ss_pred             EEehHHHHHHHHHHhccchhHHHHHHHHhccccHHHHHHhhccHHHhHHHHHHHHhcCCcCCccchHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccCCCccccccccccccchhHHHHHHHHHHhhccccccccccchhHHHHHhhcccccccCCHHHHHHHHHH
Q 005566          436 SFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSL  515 (691)
Q Consensus       436 ~F~~~ln~~~l~~i~w~~er~~~~~SlgdLlIlvl~r~I~~n~~~l~~~ylh~~cLa~LaN~sp~~~~Ls~~asqRLv~L  515 (691)
                      +|||++|+++++++.||.||.++++|+|+++|+|++|+|+|||.|.||+||||||||+|||||.+||+||+|+||||++|
T Consensus       434 gFnk~iHe~mlKnitWyser~v~EISLGglliLvviRtIQyNmlktRDkYLHTNCLAALANMSa~Fr~LhpyvaQRliSL  513 (695)
T KOG2225|consen  434 GFNKIIHETMLKNITWYSERSVREISLGGLLILVVIRTIQYNMLKTRDKYLHTNCLAALANMSAFFRNLHPYVAQRLISL  513 (695)
T ss_pred             hhhHHHHHHHHhhccceecceeeeeeccceeeeeeHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHhhhhcccc-CCCCCCCC-chhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhHhhhccccccccc
Q 005566          516 FYMLSRKYNKIADRRDDK-KGNLTEQD-SFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPF  593 (691)
Q Consensus       516 f~~ls~~~~~l~~~~~~~-~~~~~~~~-~~~~d~~~el~~~~~~L~~lLEiiNsiL~~~l~~Np~LVYalL~~r~~F~~l  593 (691)
                      |+.++||+.|+.++++.+ .+....++ +..+|+.+|++++++++||+||||||||++++++||||||++||||++||+|
T Consensus       514 f~lLtkkH~k~~~q~~~s~~~~v~~nvst~P~d~~qDl~vlEEviRm~LEIiNScLtn~L~hnpnLvY~LLYkR~lFe~f  593 (695)
T KOG2225|consen  514 FDLLTKKHAKMVDQMRVSSQNDVADNVSTQPIDFHQDLTVLEEVIRMLLEIINSCLTNGLRHNPNLVYNLLYKRALFEAF  593 (695)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccCCCCCchhhHhhHHHHHHHHHHHHHHHHHHhhCccccCchHHHHHHHHHHHHHHH
Confidence            999999999999988665 22222222 2346899999999999999999999999999999999999999999999999


Q ss_pred             ccCcchHHHHhhHHHHHHhhhhhhhhcccCCCCCHHHHHHHHHHhccccCCCCCCCchhHHHHHH
Q 005566          594 KSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCRSWRGDGLKVKADRFWMLL  658 (691)
Q Consensus       594 ~~~p~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~~I~~~~~~~~~~~l~~fp~l~~~~~  658 (691)
                      |+||+|||++|||+.|++||++|+.+-.  ....++++|++|.+++..||+|||+|||||||.-.
T Consensus       594 r~Hp~FQD~lqNId~V~~~fssk~~~V~--e~~g~~~~L~ii~k~a~~w~tdrl~kfpelkfryv  656 (695)
T KOG2225|consen  594 RQHPMFQDLLQNIDAVISHFSSKVIHVP--EGDGGSTMLQIIEKEANIWPTDRLAKFPELKFRYV  656 (695)
T ss_pred             hhChhHHHHHHHHHHHHHhhhhheeecc--ccccchhHHHHHhcccccCchhhhhhCcccceeee
Confidence            9999999999999999999999998733  23568999999999999999999999999999654

>PF09742 Dymeclin: Dyggve-Melchior-Clausen syndrome protein; InterPro: IPR019142 Dymeclin (Dyggve-Melchior-Clausen syndrome protein) contains a large number of leucine and isoleucine residues and a total of 17 repeated dileucine motifs	Back alignment and domain information

>PF12722 Hid1: High-temperature-induced dauer-formation protein	Back alignment and domain information

>KOG2226 consensus Proteins containing regions of low-complexity [General function prediction only]	Back alignment and domain information

>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function	Back alignment and domain information

>KOG4654 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		691
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 59.5 bits (143), Expect = 3e-09
 Identities = 67/434 (15%), Positives = 118/434 (27%), Gaps = 144/434 (33%)

Query: 342 HMDLEGNAHSG------PVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLV 395
           HMD E   H         V    F   FD     + D                  + +L 
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDC--KDVQD----------------MPKSILS 47

Query: 396 RTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDSSFNASIHKMILPSVPWYKEH 455
           + ++D ++M         SK   +    L   LL   Q+      + +++  +  +    
Sbjct: 48  KEEIDHIIM---------SKDAVSGTLRLFWTLL-SKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 456 LLHQTSLGSLLVIILIRTV-----------KYN-------------LSKLRD---VYLH- 487
           +  +    S++  + I              KYN             L +LR    V +  
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 488 -----TTCLATLA--------NMAPHVHRLSAYASQRLVSLFYMLSRKYNKIADRRDDKK 534
                 T +A            M   +  L+        ++  ML +   +I        
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-------D 210

Query: 535 GNLTEQDSFAEDMSAELHIYTDFLR------------IVL------EILNA------IL- 569
            N T +   + ++   +H     LR            +VL      +  NA      IL 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 570 -------TYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRV 622
                  T  L        ++ H      P +       LL      LD     L  + +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLLK---YLDCRPQDLPREVL 323

Query: 623 DGEWSVEKVLQSIIINCRSWRGDGLKVKADR--FWMLLF--KLGTFIQMILPLFILRNLD 678
                      SII        + ++        W  +   KL T I+       L  L+
Sbjct: 324 TT----NPRRLSII-------AESIRDGLATWDNWKHVNCDKLTTIIES-----SLNVLE 367

Query: 679 PF-MTDVYS--IIF 689
           P     ++    +F
Sbjct: 368 PAEYRKMFDRLSVF 381

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00