Citrus Sinensis ID: 005627

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------
MAMPQAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALPSIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM
ccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccEEEEEEEEEcHHHccccccccccEEEEEcccccccccccccEEEEccccccccHHHHHHHccccEEEEEEccHHHHHHHHHHccccEEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHcccccccccccEEEcHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHccccccccEEEEEEEEcccccccEEEEEcccccccccEEEEEEEccccccccccccccccEEEEccccccccccccccccccccccccEEEEEEcccccEEEEEccccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEccEEEEEEccccc
cccHHHHcccccHHHHHHHHccccccEEEcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccEEEEEEEEEccccccccccccccEEEEEEEccccccccccEEEEEccccccHHHHEEEEEccccEEEEEEccHHHHHHHHHccccEEEEEEccccEEEEEcccHHHccccccccccccccEEEEccccccEEEEHHHccHHHccccHHHHHHHHHHccccccccccEEEEHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHEEEEEEEEEcccHcccEEEEEEccccccccEEEEEEEcccHHHHEccccccccEEEEEcccccEEEEEEcccccEEEEEccEEEEEEcccccccEccccccccccEEccHccEcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEEEcccc
mampqavhsgaDLESAIETCYKghnsvisdsfgSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGlkdlnfshppEIMFFISLLLESLClsvvnnedliyctkdwyrvsesyRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQnkvyrrptiiiasritgeeeipvGVVAVltpdmpdvlshvsirarnnkvcfatcFDQNILRNLRLKEGKAVSIRLKSTNLIISDisssnlslsssalpsiprgitfkrKIFRgkyavsvedftpdmvgakscNIKFLRervpswikiptsvaipfgafETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKmrssgmpwpgdegwnLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIhtknplsgdnsEIYTEIVKGLGetlvgaypgramsfvtkknnlkspivtcypskliglygkpsiifrsdsngedlekyagaglydsvimndpekvvldysrdpmvgdksfqTSVFSKIAETGKIIEslygypqdieGVLKDGLIYVVQARPQM
mampqavhsgaDLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGtargrakdLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSqtyqkkfqpsvKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELitlqnkvyrrPTIIiasritgeeeiPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDisssnlslsssalpsiprgitfkrkiFRGKYAvsvedftpdmvgAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTknplsgdnSEIYTEIVKGLGETLVGAYPGRAMSFvtkknnlkspiVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM
MAMPQAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFIsllleslclsVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKstnliisdisssnlslsssalpsiPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM
***************AIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDI*************SIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQ*****
MAMPQAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTM**********HPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRV**********WALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTN**********************************KYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGM**PGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIF***********************NDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ*
***********DLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALPSIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM
MAMPQAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISS**************RGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARP**
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MAMPQAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALPSIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query687 2.2.26 [Sep-21-2011]
Q9STV01278 Alpha-glucan water dikina yes no 0.989 0.532 0.653 0.0
Q8LPT91475 Alpha-glucan water dikina N/A no 1.0 0.465 0.563 0.0
Q9AWA51464 Alpha-glucan water dikina N/A no 0.998 0.468 0.557 0.0
Q9SAC61399 Alpha-glucan water dikina no no 1.0 0.491 0.557 0.0
Q2QTC21206 Phosphoglucan, water diki no no 0.771 0.439 0.259 4e-39
Q6ZY511196 Phosphoglucan, water diki no no 0.778 0.447 0.262 3e-38
O29548 753 Probable phosphoenolpyruv yes no 0.382 0.349 0.231 2e-09
O57830 821 Probable phosphoenolpyruv yes no 0.240 0.200 0.259 2e-09
Q9V2H7 819 Probable phosphoenolpyruv yes no 0.240 0.201 0.254 3e-09
O27190 684 Probable phosphoenolpyruv yes no 0.235 0.236 0.258 3e-09
>sp|Q9STV0|GWD2_ARATH Alpha-glucan water dikinase 2 OS=Arabidopsis thaliana GN=GWD2 PE=2 SV=3 Back     alignment and function desciption
 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/687 (65%), Positives = 553/687 (80%), Gaps = 7/687 (1%)

Query: 5    QAVHSGADLESAIETCY---KGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEK 61
            +AVHSGADLESAI+T     KGH+     +   LS KL++ L  +K  + +E+   L+EK
Sbjct: 595  KAVHSGADLESAIDTFLSPSKGHHVF---AVNGLSPKLQDLLNLVKRLVREENTEPLIEK 651

Query: 62   LVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLL 121
            LVD+RI+LHP L   R RAKDLLFLDI+L S  KTT+E+ L  LNF++PPEI++ I ++L
Sbjct: 652  LVDARIQLHPALRAPRTRAKDLLFLDIALESCFKTTIEKRLISLNFNNPPEIIYVICVVL 711

Query: 122  ESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKF 181
            E+LCLS+VNNE++I+CTKDWYRVSE+YR +D QWALQ KA+LDRLQLVLA+R Q Y    
Sbjct: 712  ENLCLSIVNNEEIIFCTKDWYRVSEAYRPHDVQWALQTKAVLDRLQLVLADRCQHYFTII 771

Query: 182  QPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPV 241
            QP+ KYLG LL V+K+ ID FTEE++RA   AVLS L+NRF+P LRK+ANLGCWQVIS  
Sbjct: 772  QPTAKYLGQLLRVDKHGIDVFTEEVIRAGPGAVLSTLVNRFDPSLRKIANLGCWQVISSA 831

Query: 242  EVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRA 301
            +  GF+  VNELI +QNK Y +PT+IIAS++TGEEEIP GVVAVLTP M DVLSHVSIRA
Sbjct: 832  DAYGFVVCVNELIVVQNKFYSKPTVIIASKVTGEEEIPAGVVAVLTPSMIDVLSHVSIRA 891

Query: 302  RNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALPSIPRGI 361
            RN+K+CFATCFDQN+L NL+ KEG+A+SI  KST L+ISD ++S++S+    + S+PRG+
Sbjct: 892  RNSKICFATCFDQNVLSNLKSKEGRAISIHTKSTGLVISDGNNSDVSVRHIFISSVPRGV 951

Query: 362  TFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSE 421
              K K F G Y +S ++FT + VG+KS NIKFLRERVPSWIKIPTS A+PFG FE +LS+
Sbjct: 952  ISKGKKFCGHYVISSKEFTDERVGSKSYNIKFLRERVPSWIKIPTSAALPFGTFENILSD 1011

Query: 422  NINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDE 481
            + NKD+A +IS L   +N GDL+KL+ IQEA+LQMSAP++L  EL  K+RS  MP+ GDE
Sbjct: 1012 DSNKDVARRISVLKDSLNRGDLTKLKSIQEAILQMSAPMALRNELITKLRSERMPYLGDE 1071

Query: 482  -GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPL 540
             GWN +W +IKKVWASKWNERA++SC+K  L+HD +CMAVLIQE ICGDYAFVIHT NP+
Sbjct: 1072 SGWNRSWVAIKKVWASKWNERAYVSCKKNKLDHDAVCMAVLIQEVICGDYAFVIHTNNPV 1131

Query: 541  SGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIF 600
            SGD+SEIYTEIVKGLGETLVGAYPGRAMSF+TKK NLKSP V  YPSK IGLY KPSIIF
Sbjct: 1132 SGDSSEIYTEIVKGLGETLVGAYPGRAMSFITKKTNLKSPTVISYPSKRIGLYSKPSIIF 1191

Query: 601  RSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIE 660
            RSDSN EDLE  AGAGLYDSVIM++ E+VV+DYSR+P++ DKSF+  +FS IAE G +IE
Sbjct: 1192 RSDSNNEDLEGNAGAGLYDSVIMDEAEEVVVDYSREPLIMDKSFRVRLFSAIAEAGNVIE 1251

Query: 661  SLYGYPQDIEGVLKDGLIYVVQARPQM 687
            S+YG PQDIEGV+K G IY+VQARPQ+
Sbjct: 1252 SIYGCPQDIEGVVKGGHIYIVQARPQV 1278
Mediates the incorporation of phosphate into alpha-glucan, mostly at the C-6 position of glucose units.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 9EC: .EC: 4
>sp|Q8LPT9|GWD1_CITRE Alpha-glucan water dikinase, chloroplastic OS=Citrus reticulata GN=R1 PE=2 SV=1 Back     alignment and function description
>sp|Q9AWA5|GWD1_SOLTU Alpha-glucan water dikinase, chloroplastic OS=Solanum tuberosum GN=R1 PE=1 SV=2 Back     alignment and function description
>sp|Q9SAC6|GWD1_ARATH Alpha-glucan water dikinase 1, chloroplastic OS=Arabidopsis thaliana GN=GWD1 PE=1 SV=2 Back     alignment and function description
>sp|Q2QTC2|PWD_ORYSJ Phosphoglucan, water dikinase, chloroplastic OS=Oryza sativa subsp. japonica GN=GWD3 PE=3 SV=2 Back     alignment and function description
>sp|Q6ZY51|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis thaliana GN=GWD3 PE=1 SV=1 Back     alignment and function description
>sp|O29548|PPSA_ARCFU Probable phosphoenolpyruvate synthase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ppsA PE=3 SV=1 Back     alignment and function description
>sp|O57830|PPSA_PYRHO Probable phosphoenolpyruvate synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=ppsA PE=3 SV=1 Back     alignment and function description
>sp|Q9V2H7|PPSA_PYRAB Probable phosphoenolpyruvate synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ppsA PE=3 SV=1 Back     alignment and function description
>sp|O27190|PPSA_METTH Probable phosphoenolpyruvate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=ppsA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query687
255572858 1228 alpha-glucan water dikinase, chloroplast 0.966 0.540 0.709 0.0
28393438 1278 unknown protein [Arabidopsis thaliana] 0.989 0.532 0.655 0.0
79485345 1278 phosphoglucan, water dikinase [Arabidops 0.989 0.532 0.653 0.0
5051787 1288 putative protein [Arabidopsis thaliana] 0.989 0.527 0.647 0.0
297803668 1291 ATGWD2/GWD3 [Arabidopsis lyrata subsp. l 0.989 0.526 0.635 0.0
224110912 1477 predicted protein [Populus trichocarpa] 0.998 0.464 0.563 0.0
356567660 1459 PREDICTED: alpha-glucan water dikinase, 0.992 0.467 0.561 0.0
57012985 1475 RecName: Full=Alpha-glucan water dikinas 1.0 0.465 0.563 0.0
356526777 1459 PREDICTED: alpha-glucan water dikinase, 1.0 0.470 0.56 0.0
449434955 1482 PREDICTED: alpha-glucan water dikinase, 1.0 0.463 0.560 0.0
>gi|255572858|ref|XP_002527361.1| alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis] gi|223533280|gb|EEF35033.1| alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/686 (70%), Positives = 567/686 (82%), Gaps = 22/686 (3%)

Query: 5    QAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVD 64
            +AVHSGADLESAIETC        S  F     KL+E + +   +          +KL++
Sbjct: 562  KAVHSGADLESAIETCLGP-----SSKF-----KLKEIILYDLIY---------FQKLLE 602

Query: 65   SRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESL 124
            SRIEL  VL T+  RAKDLLF D++L SAI+T ME  LK L+F    +IMF+ISL+LE+L
Sbjct: 603  SRIELRLVLLTSSERAKDLLFFDVALDSAIRTIMESRLKHLSFDRLQDIMFYISLVLENL 662

Query: 125  CLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPS 184
            CL+ VNNEDLI C KDWYRV ESY+ ND QWALQ KA+LDRLQL+LA+RS  YQKK QPS
Sbjct: 663  CLTTVNNEDLICCIKDWYRVRESYKANDVQWALQTKAVLDRLQLILADRSLNYQKKIQPS 722

Query: 185  VKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVC 244
             +YLG LLG+ K VID FTEEL+RA S  +LS L+NRF+PVLRKVA+LGCWQVISPVEVC
Sbjct: 723  AQYLGKLLGIGKSVIDMFTEELIRAGSATILSTLVNRFDPVLRKVASLGCWQVISPVEVC 782

Query: 245  GFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNN 304
            GF+T VNELIT+QN+VYR+PT+IIA+R++GEEEIP GVVAVLTPDMPD+LSHVSIRARN+
Sbjct: 783  GFVTCVNELITIQNRVYRKPTVIIANRVSGEEEIPEGVVAVLTPDMPDILSHVSIRARNS 842

Query: 305  KVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALPSIPRGITFK 364
            KVCFATCFDQNIL+NL+LKEGKA+SI LKS NLIISDIS SNLSL+SS   SI R +TFK
Sbjct: 843  KVCFATCFDQNILKNLKLKEGKAISISLKSMNLIISDISGSNLSLNSSICTSIARPVTFK 902

Query: 365  RKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENIN 424
            RK F GKYA+SVE+FT +MVGAKSCNIKFLR++VPSWIKIP SVA+PFG FE VLSENIN
Sbjct: 903  RKTFYGKYAISVEEFTAEMVGAKSCNIKFLRKKVPSWIKIPISVALPFGTFEAVLSENIN 962

Query: 425  KDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEG-- 482
            KD+ANKIS  YK +  GD +KLQ IQ A+ QMSAPLSL  ELK+KMRSS +PWPGDE   
Sbjct: 963  KDLANKISGFYKSVLSGDFTKLQAIQGAIQQMSAPLSLTCELKSKMRSSRLPWPGDESEE 1022

Query: 483  -WNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLS 541
             WN AW++IKKVWASKWNER  +SCRKANLNHDNL MAVLIQE ICGDYAFVIHTKNPL+
Sbjct: 1023 RWNHAWKAIKKVWASKWNERVHVSCRKANLNHDNLRMAVLIQEVICGDYAFVIHTKNPLT 1082

Query: 542  GDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFR 601
            GD SEIY EIVKGLGETLVGAYPGRAMSF+TKK+N+  PIV  YPSK IGLY K S+IFR
Sbjct: 1083 GDASEIYIEIVKGLGETLVGAYPGRAMSFITKKSNINFPIVISYPSKNIGLYSKKSLIFR 1142

Query: 602  SDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIES 661
            SDSNGED+E +AGAGLYDSV+M++ E+VVL+YSRD M+ DK+FQ S+FSKIAE G+++E 
Sbjct: 1143 SDSNGEDVEAFAGAGLYDSVLMDEEERVVLNYSRDRMIVDKAFQVSLFSKIAEAGRVMEG 1202

Query: 662  LYGYPQDIEGVLKDGLIYVVQARPQM 687
            LYG PQDIEGV+KDG IY+VQARPQ+
Sbjct: 1203 LYGCPQDIEGVVKDGAIYIVQARPQV 1228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|28393438|gb|AAO42141.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79485345|ref|NP_194176.3| phosphoglucan, water dikinase [Arabidopsis thaliana] gi|332278206|sp|Q9STV0.3|GWD2_ARATH RecName: Full=Alpha-glucan water dikinase 2; Flags: Precursor gi|332659506|gb|AEE84906.1| phosphoglucan, water dikinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5051787|emb|CAB45080.1| putative protein [Arabidopsis thaliana] gi|7269295|emb|CAB79355.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297803668|ref|XP_002869718.1| ATGWD2/GWD3 [Arabidopsis lyrata subsp. lyrata] gi|297315554|gb|EFH45977.1| ATGWD2/GWD3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224110912|ref|XP_002315679.1| predicted protein [Populus trichocarpa] gi|222864719|gb|EEF01850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356567660|ref|XP_003552035.1| PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|57012985|sp|Q8LPT9.1|GWD1_CITRE RecName: Full=Alpha-glucan water dikinase, chloroplastic; AltName: Full=Starch-related protein R1; Flags: Precursor gi|20384925|gb|AAM18228.1| R1 [Citrus reticulata] Back     alignment and taxonomy information
>gi|356526777|ref|XP_003531993.1| PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|449434955|ref|XP_004135261.1| PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query687
TAIR|locus:21360271278 PWD "phosphoglucan, water diki 0.989 0.532 0.631 2.6e-230
TAIR|locus:20199531399 SEX1 "STARCH EXCESS 1" [Arabid 0.994 0.488 0.540 1.9e-195
TAIR|locus:21510891196 PWD "PHOSPHOGLUCAN WATER DIKIN 0.291 0.167 0.280 2.7e-33
TIGR_CMR|BA_3116 868 BA_3116 "phosphoenolpyruvate s 0.157 0.124 0.205 5.3e-05
TIGR_CMR|DET_0554 758 DET_0554 "phosphoenolpyruvate 0.116 0.105 0.312 5.8e-05
TAIR|locus:2136027 PWD "phosphoglucan, water dikinase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2222 (787.2 bits), Expect = 2.6e-230, P = 2.6e-230
 Identities = 434/687 (63%), Positives = 527/687 (76%)

Query:     5 QAVHSGADLESAIETCY---KGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEK 61
             +AVHSGADLESAI+T     KGH+     +   LS KL++ L  +K  + +E+   L+EK
Sbjct:   595 KAVHSGADLESAIDTFLSPSKGHHVF---AVNGLSPKLQDLLNLVKRLVREENTEPLIEK 651

Query:    62 LVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFIXXXX 121
             LVD+RI+LHP L   R RAKDLLFLDI+L S  KTT+E+ L  LNF++PPEI++ I    
Sbjct:   652 LVDARIQLHPALRAPRTRAKDLLFLDIALESCFKTTIEKRLISLNFNNPPEIIYVICVVL 711

Query:   122 XXXXXXVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKF 181
                   +VNNE++I+CTKDWYRVSE+YR +D QWALQ KA+LDRLQLVLA+R Q Y    
Sbjct:   712 ENLCLSIVNNEEIIFCTKDWYRVSEAYRPHDVQWALQTKAVLDRLQLVLADRCQHYFTII 771

Query:   182 QPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPV 241
             QP+ KYLG LL V+K+ ID FTEE++RA   AVLS L+NRF+P LRK+ANLGCWQVIS  
Sbjct:   772 QPTAKYLGQLLRVDKHGIDVFTEEVIRAGPGAVLSTLVNRFDPSLRKIANLGCWQVISSA 831

Query:   242 EVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRA 301
             +  GF+  VNELI +QNK Y +PT+IIAS++TGEEEIP GVVAVLTP M DVLSHVSIRA
Sbjct:   832 DAYGFVVCVNELIVVQNKFYSKPTVIIASKVTGEEEIPAGVVAVLTPSMIDVLSHVSIRA 891

Query:   302 RNNKVCFATCFDQNILRNLRLKEGKAVSIRLKXXXXXXXXXXXXXXXXXXXXXXXXPRGI 361
             RN+K+CFATCFDQN+L NL+ KEG+A+SI  K                        PRG+
Sbjct:   892 RNSKICFATCFDQNVLSNLKSKEGRAISIHTKSTGLVISDGNNSDVSVRHIFISSVPRGV 951

Query:   362 TFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSE 421
               K K F G Y +S ++FT + VG+KS NIKFLRERVPSWIKIPTS A+PFG FE +LS+
Sbjct:   952 ISKGKKFCGHYVISSKEFTDERVGSKSYNIKFLRERVPSWIKIPTSAALPFGTFENILSD 1011

Query:   422 NINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDE 481
             + NKD+A +IS L   +N GDL+KL+ IQEA+LQMSAP++L  EL  K+RS  MP+ GDE
Sbjct:  1012 DSNKDVARRISVLKDSLNRGDLTKLKSIQEAILQMSAPMALRNELITKLRSERMPYLGDE 1071

Query:   482 -GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPL 540
              GWN +W +IKKVWASKWNERA++SC+K  L+HD +CMAVLIQE ICGDYAFVIHT NP+
Sbjct:  1072 SGWNRSWVAIKKVWASKWNERAYVSCKKNKLDHDAVCMAVLIQEVICGDYAFVIHTNNPV 1131

Query:   541 SGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIF 600
             SGD+SEIYTEIVKGLGETLVGAYPGRAMSF+TKK NLKSP V  YPSK IGLY KPSIIF
Sbjct:  1132 SGDSSEIYTEIVKGLGETLVGAYPGRAMSFITKKTNLKSPTVISYPSKRIGLYSKPSIIF 1191

Query:   601 RSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIE 660
             RSDSN EDLE  AGAGLYDSVIM++ E+VV+DYSR+P++ DKSF+  +FS IAE G +IE
Sbjct:  1192 RSDSNNEDLEGNAGAGLYDSVIMDEAEEVVVDYSREPLIMDKSFRVRLFSAIAEAGNVIE 1251

Query:   661 SLYGYPQDIEGVLKDGLIYVVQARPQM 687
             S+YG PQDIEGV+K G IY+VQARPQ+
Sbjct:  1252 SIYGCPQDIEGVVKGGHIYIVQARPQV 1278
GO:0005524 "ATP binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016301 "kinase activity" evidence=IEA
GO:0016310 "phosphorylation" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
TAIR|locus:2019953 SEX1 "STARCH EXCESS 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151089 PWD "PHOSPHOGLUCAN WATER DIKINASE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3116 BA_3116 "phosphoenolpyruvate synthase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0554 DET_0554 "phosphoenolpyruvate synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.9.40.824
3rd Layer2.7.90.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PWD
PWD (PHOSPHOGLUCAN, WATER DIKINASE); ATP binding / kinase; PHOSPHOGLUCAN, WATER DIKINASE (PWD); FUNCTIONS IN- kinase activity, ATP binding; INVOLVED IN- phosphorylation; LOCATED IN- chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro-IPR002192); BEST Arabidopsis thaliana protein match is- SEX1 (STARCH EXCESS 1); alpha-glucan, water dikinase (TAIR-AT1G10760.1); Has 968 Blast hits to 950 proteins in 384 species- Archae - 116; Bacteria - 652; Metazoa - 0; Fungi [...] (1278 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
SEX4
SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase; [...] (379 aa)
      • 0.925
DPE1
DPE1 (DISPROPORTIONATING ENZYME); 4-alpha-glucanotransferase/ catalytic/ cation binding; Encode [...] (576 aa)
      • 0.921
ISA3
ISA3 (ISOAMYLASE 3); alpha-amylase/ isoamylase; Encodes an isoamylase-like protein. Mutant stud [...] (764 aa)
      • 0.919
RCP1
RCP1 (ROOT CAP 1); maltose transmembrane transporter; Encodes a maltose transporter that is exp [...] (415 aa)
      • 0.867
AT3G29320
glucan phosphorylase, putative; Encodes a plastidic alpha-glucan phosphorylase. In vitro, the e [...] (962 aa)
      • 0.829
PHS2
PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2); phosphorylase/ transferase, transferring glycosyl groups; [...] (841 aa)
      • 0.827
ATLDA
ATLDA (LIMIT DEXTRINASE); alpha-amylase/ limit dextrinase/ pullulanase; Encodes an enzyme thoug [...] (965 aa)
      • 0.823
BAM4
BAM4 (BETA-AMYLASE 4); beta-amylase/ catalytic/ cation binding; In vitro assay indicates no bet [...] (531 aa)
      • 0.819
ADG1
ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1); glucose-1-phosphate adenylyltransferase; Encodes the sm [...] (520 aa)
      • 0.790
AMY1
AMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase; Predicted to be secreted protein based on signalP pre [...] (423 aa)
      • 0.790

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query687
pfam01326324 pfam01326, PPDK_N, Pyruvate phosphate dikinase, PE 4e-30
TIGR01418 782 TIGR01418, PEP_synth, phosphoenolpyruvate synthase 7e-15
PRK06464 795 PRK06464, PRK06464, phosphoenolpyruvate synthase; 1e-11
COG0574 740 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruva 2e-10
PRK06241 871 PRK06241, PRK06241, phosphoenolpyruvate synthase; 2e-09
PRK06241 871 PRK06241, PRK06241, phosphoenolpyruvate synthase; 3e-06
>gnl|CDD|216434 pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain Back     alignment and domain information 
 Score =  121 bits (304), Expect = 4e-30
 Identities = 78/336 (23%), Positives = 123/336 (36%), Gaps = 67/336 (19%)

Query: 380 TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFIN 439
             D+VG K+ N+  L       + +P    I   AF   L EN  ++    + R     +
Sbjct: 3   DVDLVGGKAANLAELARAG---LPVPPGFVITTEAFRRFLEENGLREEILSLLRPLLLSD 59

Query: 440 GGDLSKL-QEIQEAVLQMSAPLSLIYELKNK-----------MRSS-------GMPWPGD 480
              L      I+E +L    P  L+  L              +RSS          + G 
Sbjct: 60  RSSLDAASPGIRELILNAPLPDELVEALAAALDELGADAPVAVRSSATAEDLPEASFAGQ 119

Query: 481 -------EGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFV 533
                   G      +IK VWAS ++ RA    +   ++ + + MAV++Q  +  D + V
Sbjct: 120 YDTYLNVNGLEQLLDAIKAVWASLFSPRALAYRQARGIDDEEVGMAVVVQPMVDADASGV 179

Query: 534 IHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGR--AMSFVTKKNNLKSPIVTCYPSKLIG 591
             T++P +GD   +  E V GLGE +V    G     +FV  ++                
Sbjct: 180 AFTRDPSTGDRDLVVIEAVWGLGEAVVS---GEVTPDTFVVSRD---------------- 220

Query: 592 LYGKPSIIFRSDSNGEDLEKYAGAGL-YDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFS 650
                ++  R     E      G G     V        VL         D   Q     
Sbjct: 221 ---DGTVRERELGQKEVALVLEGGGTVEVPVPEERRSAPVLT--------DAQLQE---- 265

Query: 651 KIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 686
            +A+  K +E+ +G PQDIE  +  G +Y++QARP 
Sbjct: 266 -LADLAKRLEAHFGSPQDIEWAIDGGRLYILQARPI 300

This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). Length = 324
>gnl|CDD|233405 TIGR01418, PEP_synth, phosphoenolpyruvate synthase Back     alignment and domain information
>gnl|CDD|235809 PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>gnl|CDD|223647 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>gnl|CDD|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 687
PRK06464 795 phosphoenolpyruvate synthase; Validated 100.0
PRK06241 871 phosphoenolpyruvate synthase; Validated 100.0
TIGR01418 782 PEP_synth phosphoenolpyruvate synthase. Also calle 100.0
PF01326327 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate 100.0
PRK05878 530 pyruvate phosphate dikinase; Provisional 100.0
COG0574 740 PpsA Phosphoenolpyruvate synthase/pyruvate phospha 100.0
TIGR01828 856 pyru_phos_dikin pyruvate, phosphate dikinase. This 100.0
PRK09279 879 pyruvate phosphate dikinase; Provisional 100.0
PRK05849 783 hypothetical protein; Provisional 99.95
PRK05849783 hypothetical protein; Provisional 96.92
PRK06241871 phosphoenolpyruvate synthase; Validated 96.86
PF0039180 PEP-utilizers: PEP-utilising enzyme, mobile domain 96.57
PRK08296603 hypothetical protein; Provisional 96.51
PRK05865854 hypothetical protein; Provisional 95.32
PRK05878530 pyruvate phosphate dikinase; Provisional 94.85
PRK06354590 pyruvate kinase; Provisional 94.8
TIGR01418782 PEP_synth phosphoenolpyruvate synthase. Also calle 94.76
PRK06464795 phosphoenolpyruvate synthase; Validated 94.38
PRK09279879 pyruvate phosphate dikinase; Provisional 94.05
PRK11377473 dihydroxyacetone kinase subunit M; Provisional 93.62
TIGR01828856 pyru_phos_dikin pyruvate, phosphate dikinase. This 93.14
PRK11177575 phosphoenolpyruvate-protein phosphotransferase; Pr 91.88
TIGR01417565 PTS_I_fam phosphoenolpyruvate-protein phosphotrans 91.34
COG3848111 Phosphohistidine swiveling domain [Signal transduc 91.19
PRK11061748 fused phosphoenolpyruvate-protein phosphotransfera 90.59
COG1080574 PtsA Phosphoenolpyruvate-protein kinase (PTS syste 89.85
>PRK06464 phosphoenolpyruvate synthase; Validated Back     alignment and domain information 
Probab=100.00  E-value=6.4e-52  Score=486.88  Aligned_cols=289  Identities=24%  Similarity=0.387  Sum_probs=240.7

Q ss_pred             CCceeeeCCCCC---CCCcCHHhHhHHHHhhhCC-CCccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChH
Q 005627          369 RGKYAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS  444 (687)
Q Consensus       369 ~~~~vl~l~e~~---~~~vG~KAanLa~L~~~~p-~~~~VP~GfvIpf~af~~~L~~~~~~~l~~~l~~l~~~~~~~d~~  444 (687)
                      ++++++||+++.   ...|||||+||++|++.++ .|++||+|||||+++|++||+.+   ++.+.|..+...++.++..
T Consensus         3 ~~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~   79 (795)
T PRK06464          3 MMKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVD   79 (795)
T ss_pred             CCceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHH
Confidence            456899998874   4679999999999998655 58999999999999999999998   7888888777767666665


Q ss_pred             HH----HHHHHHHHcCCCCHHHHHHHHHHHH--------------hcC-------CCCCCCc-------cHHHHHHHHHH
Q 005627          445 KL----QEIQEAVLQMSAPLSLIYELKNKMR--------------SSG-------MPWPGDE-------GWNLAWRSIKK  492 (687)
Q Consensus       445 ~l----~~ir~~I~~~~lP~el~~~L~~a~r--------------Ssg-------~~~aG~~-------~~e~l~~AIk~  492 (687)
                      .+    ++||++|++.++|+++.++|.++++              ||+       .||||+|       +.+++++|||+
T Consensus        80 ~l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~  159 (795)
T PRK06464         80 ALAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKE  159 (795)
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHH
Confidence            43    8999999999999999999988764              442       3789987       37999999999


Q ss_pred             HHhcCCChHHHHHHHHcCCCCCCcceeEEEEeecCCc--eeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCceE
Q 005627          493 VWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSF  570 (687)
Q Consensus       493 VWAS~f~~RA~~yR~~~Gi~~~~~~MAVLVQemV~a~--~SGVlfT~nP~tg~~~~i~iea~~GLGE~lVsG~~G~p~~f  570 (687)
                      ||||+||+||+.||+++|++++++.|||+||+||+++  +|||+||+||.+++.++++||++|||||+||+|.+ +||+|
T Consensus       160 v~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~  238 (795)
T PRK06464        160 CFASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEF  238 (795)
T ss_pred             HHHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEE
Confidence            9999999999999999999999999999999999999  99999999999999999999999999999999987 99999


Q ss_pred             EEecCCCC--CCccccccccccccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHH
Q 005627          571 VTKKNNLK--SPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSV  648 (687)
Q Consensus       571 ~v~k~~~~--~~~vl~~~sk~i~~~~~~~~i~~~dsngedle~~~g~Gl~~~vp~~~~~~~~~dy~~~~~l~d~~~r~~~  648 (687)
                      +++|.+..  ...++   .+.++.| ...+++.  ..|       +.|+ ..+++++..      ++.|+|+|++     
T Consensus       239 ~v~~~~~~~~~~~i~---~~~i~~K-~~~~~~~--~~~-------~~~~-~~~~~~~~~------~~~~~L~~~~-----  293 (795)
T PRK06464        239 YVHKPTLKAGKPAIV---RRTLGSK-KIKMVYD--DGG-------EHGV-KTVDVPEEE------RNRFSLTDEE-----  293 (795)
T ss_pred             EEeccccccccccee---eeecccc-ceeeeec--cCC-------CCce-eEEeCCHHH------hhccCCCHHH-----
Confidence            99987642  11122   4555554 2223322  111       1122 345555432      4679999987     


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEEEC--CeEEEEeeccC
Q 005627          649 FSKIAETGKIIESLYGYPQDIEGVLKD--GLIYVVQARPQ  686 (687)
Q Consensus       649 l~~La~lg~~IE~~fG~PQDIEwai~~--g~L~IlQsRP~  686 (687)
                      +++|++++++||++||+|||||||+++  |+|||||+||+
T Consensus       294 l~~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPi  333 (795)
T PRK06464        294 VLELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPE  333 (795)
T ss_pred             HHHHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeecc
Confidence            899999999999999999999999987  99999999997

>PRK06241 phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>TIGR01418 PEP_synth phosphoenolpyruvate synthase Back     alignment and domain information
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) [] Back     alignment and domain information
>PRK05878 pyruvate phosphate dikinase; Provisional Back     alignment and domain information
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase Back     alignment and domain information
>PRK09279 pyruvate phosphate dikinase; Provisional Back     alignment and domain information
>PRK05849 hypothetical protein; Provisional Back     alignment and domain information
>PRK05849 hypothetical protein; Provisional Back     alignment and domain information
>PRK06241 phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ] Back     alignment and domain information
>PRK08296 hypothetical protein; Provisional Back     alignment and domain information
>PRK05865 hypothetical protein; Provisional Back     alignment and domain information
>PRK05878 pyruvate phosphate dikinase; Provisional Back     alignment and domain information
>PRK06354 pyruvate kinase; Provisional Back     alignment and domain information
>TIGR01418 PEP_synth phosphoenolpyruvate synthase Back     alignment and domain information
>PRK06464 phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>PRK09279 pyruvate phosphate dikinase; Provisional Back     alignment and domain information
>PRK11377 dihydroxyacetone kinase subunit M; Provisional Back     alignment and domain information
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase Back     alignment and domain information
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional Back     alignment and domain information
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase Back     alignment and domain information
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query687
2ols_A 794 Phosphoenolpyruvate synthase; MC structural genomi 1e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-15
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Length = 794 Back     alignment and structure
 Score = 92.7 bits (230), Expect = 1e-19
 Identities = 71/349 (20%), Positives = 130/349 (37%), Gaps = 72/349 (20%)

Query: 382 DMVGAKSCNI-KFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFING 440
           + VG K+ ++ + + +     +++P   A    A+   L+ N    ++ +IS     ++ 
Sbjct: 18  ERVGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHN---GLSERISAALAKLDV 74

Query: 441 GDLSKLQE----IQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRS------- 489
            D+++L      I++ +L    P  L  E++           G +  ++A RS       
Sbjct: 75  EDVAELARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADI-SVAVRSSATAEDL 133

Query: 490 ------------------------IKKVWASKWNERAFISCRKAN-LNHDNLCMAVLIQE 524
                                   +  V+AS +N+RA IS R      HD + ++  +Q 
Sbjct: 134 PDASFAGQQETFLNINGLDNVKEAMHHVFASLYNDRA-ISYRVHKGFEHDIVALSAGVQR 192

Query: 525 TICGDYAF--VIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAM--SFVTKKNNLKSP 580
            +  D     V+ T +  SG +  ++     GLGE +V    G      F   K  LK+ 
Sbjct: 193 MVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQ---GAVNPDEFYVFKPTLKA- 248

Query: 581 IVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVG 640
                        GKP+I+ ++  +      +         + N    V  +      + 
Sbjct: 249 -------------GKPAILRKTMGSKHIKMIFTDKAEAGKSVTN--VDVPEEDRNRFSIT 293

Query: 641 DKSFQTSVFSKIAETGKIIESLYGYPQDIEGVL--KDGLIYVVQARPQM 687
           D+         +A     IE  YG P DIE      DG +Y++QARP+ 
Sbjct: 294 DEEITE-----LAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPET 337
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query687
2ols_A 794 Phosphoenolpyruvate synthase; MC structural genomi 100.0
1vbg_A 876 Pyruvate,orthophosphate dikinase; transferase, mai 100.0
1kbl_A 873 PPDK, pyruvate phosphate dikinase; transferase, ph 100.0
1h6z_A 913 Pyruvate phosphate dikinase; transferase, tropical 100.0
2x0s_A 913 Pyruvate phosphate dikinase; transferase, tropical 100.0
3t05_A606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 96.23
2e28_A587 Pyruvate kinase, PK; allosteric, transferase; 2.40 95.97
1zym_A258 Enzyme I; phosphotransferase; 2.50A {Escherichia c 95.55
2ols_A794 Phosphoenolpyruvate synthase; MC structural genomi 95.41
1vbg_A876 Pyruvate,orthophosphate dikinase; transferase, mai 94.58
1kbl_A873 PPDK, pyruvate phosphate dikinase; transferase, ph 94.36
1h6z_A913 Pyruvate phosphate dikinase; transferase, tropical 93.67
2wqd_A572 Phosphoenolpyruvate-protein phosphotransferase; ki 93.6
2hwg_A575 Phosphoenolpyruvate-protein phosphotransferase; en 93.53
2x0s_A913 Pyruvate phosphate dikinase; transferase, tropical 91.03
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Back     alignment and structure
Probab=100.00  E-value=2.1e-50  Score=474.84  Aligned_cols=291  Identities=23%  Similarity=0.347  Sum_probs=236.2

Q ss_pred             CCceeeeCCCCCC---CCcCHHhHhHHHHhhhCC-CCccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChH
Q 005627          369 RGKYAVSVEDFTP---DMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS  444 (687)
Q Consensus       369 ~~~~vl~l~e~~~---~~vG~KAanLa~L~~~~p-~~~~VP~GfvIpf~af~~~L~~~~~~~l~~~l~~l~~~~~~~d~~  444 (687)
                      +++|++||++.+.   +.+|||++||++|.++++ .+++||+||+||+++|++|++++   ++++.|....+.++.++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~vGGK~anL~em~~~L~~~GlpVP~GF~Itt~a~~~fl~~~---~l~~~i~~~l~~l~~~~~~   78 (794)
T 2ols_A            2 ADNYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHN---GLSERISAALAKLDVEDVA   78 (794)
T ss_dssp             --CCEEEGGGCCGGGHHHHHHHHHHHHHHHHHHGGGTCCCCCEEEECHHHHHHHHTGG---GHHHHHHHHHHSCCTTSHH
T ss_pred             CCCEEEECCcCChhhcccCCHHHHHHHHHHHHHhhCCCCCCCEEEECHHHHHHHHHhC---ChHHHHHHHHHhhcccCHH
Confidence            4579999998754   689999999999987432 48999999999999999999987   8888888877777777655


Q ss_pred             H----HHHHHHHHHcCCCCHHHHHHHHHHHHh----------------c-------CCCCCCCc-------cHHHHHHHH
Q 005627          445 K----LQEIQEAVLQMSAPLSLIYELKNKMRS----------------S-------GMPWPGDE-------GWNLAWRSI  490 (687)
Q Consensus       445 ~----l~~ir~~I~~~~lP~el~~~L~~a~rS----------------s-------g~~~aG~~-------~~e~l~~AI  490 (687)
                      .    ..++|++|++.++|+++.++|.++++.                |       +.+|+|++       +++++++||
T Consensus        79 ~l~~~~~~ir~~I~~~~~p~~l~~~i~~a~~~l~~~~g~~~~~vaVRSSa~~EDl~~~sfAG~~~t~l~v~g~~~l~~Ai  158 (794)
T 2ols_A           79 ELARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADISVAVRSSATAEDLPDASFAGQQETFLNINGLDNVKEAM  158 (794)
T ss_dssp             HHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTSSCCCCEEEEEEECC-------CCSCSCEEEEECSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccccccCceEEEecCCChhhhhhhhhhhhhhhhhcCCCHHHHHHHH
Confidence            3    378999999999999999999887642                2       13688986       599999999


Q ss_pred             HHHHhcCCChHHHHHHHHcCCCCCCcceeEEEEeecCCc--eeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCc
Q 005627          491 KKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAM  568 (687)
Q Consensus       491 k~VWAS~f~~RA~~yR~~~Gi~~~~~~MAVLVQemV~a~--~SGVlfT~nP~tg~~~~i~iea~~GLGE~lVsG~~G~p~  568 (687)
                      |+||||+||+||+.||+++|++++++.|||+||+||+++  +|||+||+||.||+.+.++||++|||||.||+|.+ +|+
T Consensus       159 k~v~aS~~s~RAi~YR~~~gi~~~~~~mAV~VQ~MV~~~~s~sGV~FT~dP~tG~~~~~~I~a~~GlGE~vV~G~~-tpd  237 (794)
T 2ols_A          159 HHVFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQGAV-NPD  237 (794)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCC--CCCCEEEEEEECCCTTSSEEEEEESSCTTTCCCSEEEEEEEESCTHHHHHTSS-CCE
T ss_pred             HHHHHhcCCHHHHHHHHHcCCChHHhCceEEEEEcccCCceeEEEEEeCCCCCCCCceEEEEeccCCCceeecCCc-CCc
Confidence            999999999999999999999999999999999999999  99999999999999999999999999999999998 899


Q ss_pred             eEEEecCCC--CCCccccccccccccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccch
Q 005627          569 SFVTKKNNL--KSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQT  646 (687)
Q Consensus       569 ~f~v~k~~~--~~~~vl~~~sk~i~~~~~~~~i~~~dsngedle~~~g~Gl~~~vp~~~~~~~~~dy~~~~~l~d~~~r~  646 (687)
                      .|.++|.+.  ....++   .+.++.+ +..+++..  +++      .+|.+..+++++..      .+.++|+|++   
T Consensus       238 ~~~v~kp~l~~~~~~i~---~~~~~~k-~~~~~~~~--~~~------~g~~~~~~~~p~~~------~~~~~L~d~~---  296 (794)
T 2ols_A          238 EFYVFKPTLKAGKPAIL---RKTMGSK-HIKMIFTD--KAE------AGKSVTNVDVPEED------RNRFSITDEE---  296 (794)
T ss_dssp             EEEEEHHHHHTTSCCEE---EEECCCC-CEEEEECS--CCS------SSTTEEEEECCHHH------HTSCSSCHHH---
T ss_pred             EEEEeccccccCCccee---eeecccc-ceeEEecc--ccc------CCCeeEEEeCCHHH------hcCCCCCHHH---
Confidence            999998210  001232   3444443 33344422  111      12324566666543      4678999987   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEEEEEECC--eEEEEeeccC
Q 005627          647 SVFSKIAETGKIIESLYGYPQDIEGVLKDG--LIYVVQARPQ  686 (687)
Q Consensus       647 ~~l~~La~lg~~IE~~fG~PQDIEwai~~g--~L~IlQsRP~  686 (687)
                        +.+|++++..||++||.||||||+++++  +|||||+||+
T Consensus       297 --~~~L~~~~~~lE~~yg~pqDIEwai~~~~g~L~iLQaRP~  336 (794)
T 2ols_A          297 --ITELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPE  336 (794)
T ss_dssp             --HHHHHHHHHHHHHHHTSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred             --HHHHHHHHHHHHHHcCCCeEEEEEEECCCCeEEEEEecCc
Confidence              7899999999999999999999999976  9999999996
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A* Back     alignment and structure
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A Back     alignment and structure
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A Back     alignment and structure
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei} Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A* Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Back     alignment and structure
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A Back     alignment and structure
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Back     alignment and structure
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A* Back     alignment and structure
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A Back     alignment and structure
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A Back     alignment and structure
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A Back     alignment and structure
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A Back     alignment and structure
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 687
d1kbla3375 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N 4e-12
d1h6za3405 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N 3e-10
d1vbga3380 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N 8e-07
>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]} Length = 375 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Clostridium symbiosum [TaxId: 1512]

 Score = 65.8 bits (159), Expect = 4e-12
 Identities = 39/339 (11%), Positives = 96/339 (28%), Gaps = 27/339 (7%)

Query: 371 KYAVSVEDFTPDM---VGAKSCNIKFLRE---RVPSWIKIPTSVAIPFGAFETVLSENIN 424
           K+    E+    M   +G K CN+  +      +P    + T     +      +++ I 
Sbjct: 2   KWVYKFEEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQ 61

Query: 425 KDIANKISRL---YKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDE 481
             I   I+ L        G     L     +  + S P  +   L   +    +     +
Sbjct: 62  DQIFEAITWLEELNGKKFGDTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKK 121

Query: 482 GWNLAWRS-------------IKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICG 528
             N  +               + +V  S + +       +  ++ D    A  ++E    
Sbjct: 122 TGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTDLTADDLKELAEK 181

Query: 529 DYAFV--IHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYP 586
             A             +  +     VK +  +                 +  + +     
Sbjct: 182 FKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQTM 241

Query: 587 SKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQT 646
                     + +  + +     +   G  L +       + V    +  P+   ++   
Sbjct: 242 VFGNKGETSGTGVAFTRNPSTGEKGIYGEYLIN---AQGEDVVAGVRTPQPITQLENDMP 298

Query: 647 SVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARP 685
             + +  +    +E  +   QD+E  +++G +Y +Q R 
Sbjct: 299 DCYKQFMDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTRN 337
>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Length = 405 Back     information, alignment and structure
>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]} Length = 380 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query687
d1h6za3405 Pyruvate phosphate dikinase, N-terminal domain {Tr 100.0
d1vbga3380 Pyruvate phosphate dikinase, N-terminal domain {Ma 99.97
d1kbla3375 Pyruvate phosphate dikinase, N-terminal domain {Cl 99.97
d1zyma2124 N-terminal domain of enzyme I of the PEP:sugar pho 97.82
d1h6za2132 Pyruvate phosphate dikinase, central domain {Trypa 96.41
d1vbga2135 Pyruvate phosphate dikinase, central domain {Maize 96.17
d1kbla2133 Pyruvate phosphate dikinase, central domain {Clost 95.8
d2hi6a1132 Hypothetical protein AF0055 {Archaeoglobus fulgidu 93.42
>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=3.2e-37  Score=334.47  Aligned_cols=268  Identities=18%  Similarity=0.197  Sum_probs=178.3

Q ss_pred             CceeeeCC----CCCC---CCcCHHhHhHHHHhhhCCCCccCCCceeeCHHHHHHHHHhcc-chhHHHHHHHHHhhhC--
Q 005627          370 GKYAVSVE----DFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI-NKDIANKISRLYKFIN--  439 (687)
Q Consensus       370 ~~~vl~l~----e~~~---~~vG~KAanLa~L~~~~p~~~~VP~GfvIpf~af~~~L~~~~-~~~l~~~l~~l~~~~~--  439 (687)
                      .+|+++|+    +.+.   ++||||++||++|.+   .|++||+|||||+.+|++|++.|. ++.+++.|......++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~lVGGK~AnLgel~~---~GipVP~GFvITt~Ay~~Fl~~n~L~~~i~~~i~~~l~~~~~~   79 (405)
T d1h6za3           3 KKWVYYFGGGNADGNKNMKELLGGKGANLAEMVN---LGIPVPPGFTITTEACKTYQETETIPQEVADQVRENVSRVEKE   79 (405)
T ss_dssp             CCCEEEECSSSCSCCTTCHHHHHHHHHHHHHHHH---TTCCCCCEEEECHHHHTTTTTSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEcCCCcccCCcchHhhccHHHHHHHHHHH---CcCCCCCCEEehHHHHHHHHHcCCCcHHHHHHHHHHHHhhhHH
Confidence            46899996    5443   589999999999988   699999999999999999998862 3445444433221110  


Q ss_pred             ----CCCh-------------HHH--------------HHHHHHHHcCCCCHHHHHHHHHHHHh------cCCC------
Q 005627          440 ----GGDL-------------SKL--------------QEIQEAVLQMSAPLSLIYELKNKMRS------SGMP------  476 (687)
Q Consensus       440 ----~~d~-------------~~l--------------~~ir~~I~~~~lP~el~~~L~~a~rS------sg~~------  476 (687)
                          .++.             ...              ...+.+.....-++.........+..      .+.+      
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  159 (405)
T d1h6za3          80 MGAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEE  159 (405)
T ss_dssp             HCCBTTCTTSBCCEEEEESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHHHHHHHHHHHHHCCCSTTTST
T ss_pred             hhhhhccccchhhhhcccccchhhhhhhhhhhhhhhhhhhHHHHHHhcccchhhHHHHHHHHHHhhcccccccchhHHHH
Confidence                0000             000              11222222222222222222111100      0000      


Q ss_pred             -----------------------------------CCCC----ccHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCC--
Q 005627          477 -----------------------------------WPGD----EGWNLAWRSIKKVWASKWNERAFISCRKANLNHDN--  515 (687)
Q Consensus       477 -----------------------------------~aG~----~~~e~l~~AIk~VWAS~f~~RA~~yR~~~Gi~~~~--  515 (687)
                                                         ..|.    .+++++..+|+.||+|+|++||..||..++++++.  
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v~~S~~~~~a~~yr~~~~~~~~~~~  239 (405)
T d1h6za3         160 ALSRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITGLLGT  239 (405)
T ss_dssp             TTHHHHHHHSCSCGGGCCHHHHHHHHHTTHHHHHHHSSSCCCCCHHHHHHHHHHHHHHTTTCTTTTTHHHHSCCCSCCCC
T ss_pred             HHHHHHHhccccccccCcHHHHHHHHHHHHHhhhhhcCCcccccchHHhHHHHHHHHhhhcCchHHHHHHhcCccchhhh
Confidence                                               0111    14789999999999999999999999999999742  


Q ss_pred             --cceeEEEEeecCCceeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCceEEEecCCCCCCccccccccccccC
Q 005627          516 --LCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLY  593 (687)
Q Consensus       516 --~~MAVLVQemV~a~~SGVlfT~nP~tg~~~~i~iea~~GLGE~lVsG~~G~p~~f~v~k~~~~~~~vl~~~sk~i~~~  593 (687)
                        ..|+|++|+|+.+..+||+||.||.+|+.+.+.+++++|+|+.+|+|.. +|+.|..++....   .     +     
T Consensus       240 ~~~~~~v~~~~~~~~~~sgv~~t~~~~tG~~~~~~~~~~~g~~~~vv~G~~-~~~~~~~~~~~~~---~-----~-----  305 (405)
T d1h6za3         240 AVNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIR-TPQQINHSLSLRW---A-----K-----  305 (405)
T ss_dssp             CEEEEECCCSCSSTTCEEEEEESSCSSSCCSSCEEEEEESCCTTHHHHCCS-CCEESSHHHHHHH---H-----T-----
T ss_pred             hheeeeeeecccccccccccccccCCCCCCCceeeEecccCcceeeccCcc-CCceeeeecccch---h-----h-----
Confidence              3455555556667789999999999999999999999999999999987 7776654442210   0     0     


Q ss_pred             CCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCCCeeEEEEE
Q 005627          594 GKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVL  673 (687)
Q Consensus       594 ~~~~~i~~~dsngedle~~~g~Gl~~~vp~~~~~~~~~dy~~~~~l~d~~~r~~~l~~La~lg~~IE~~fG~PQDIEwai  673 (687)
                       .                   .++      . ......++...+.+++++     +++|+++|.+||++||+|||||||+
T Consensus       306 -~-------------------~~~------~-~~~~~~~~~~~~~l~~e~-----~~~La~l~~~iE~~fg~PqDIEWAi  353 (405)
T d1h6za3         306 -A-------------------HGV------G-EEERRKRYPSMEEAMPEN-----YRLLCDVRKRLENHYRDMQDLEFTV  353 (405)
T ss_dssp             -T-------------------SSC------C-HHHHHHHSCCHHHHSHHH-----HHHHHHHHHHHHHHHTSCEEEEEEE
T ss_pred             -c-------------------ccc------c-eecccccccchhhcCHHH-----HHHHHHHHHHHHHHcCCCcceEEEE
Confidence             0                   000      0 000001112223345554     7899999999999999999999999


Q ss_pred             ECCeEEEEeeccC
Q 005627          674 KDGLIYVVQARPQ  686 (687)
Q Consensus       674 ~~g~L~IlQsRP~  686 (687)
                      ++|+|||||+||.
T Consensus       354 ~dg~L~ILQaRPv  366 (405)
T d1h6za3         354 QDGRLWLLQCRNG  366 (405)
T ss_dssp             ETTEEEEEEEEEC
T ss_pred             ECCEEEEEEccCC
Confidence            9999999999995
>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d1zyma2 c.8.1.2 (A:3-21,A:145-249) N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h6za2 c.8.1.1 (A:406-537) Pyruvate phosphate dikinase, central domain {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central domain {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure